Multiple sequence alignment - TraesCS3B01G106800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G106800 chr3B 100.000 3621 0 0 1 3621 72468793 72472413 0.000000e+00 6687.0
1 TraesCS3B01G106800 chr3D 91.867 1328 79 12 1444 2766 46264489 46265792 0.000000e+00 1827.0
2 TraesCS3B01G106800 chr3D 90.926 529 31 10 932 1453 46263919 46264437 0.000000e+00 695.0
3 TraesCS3B01G106800 chr3D 90.634 363 15 6 129 482 46263563 46263915 7.080000e-127 464.0
4 TraesCS3B01G106800 chr3D 94.624 93 4 1 45 136 168589000 168588908 3.770000e-30 143.0
5 TraesCS3B01G106800 chr1A 98.832 856 7 2 2766 3621 42225039 42224187 0.000000e+00 1522.0
6 TraesCS3B01G106800 chr1A 90.909 121 8 3 3251 3370 42224686 42224568 3.740000e-35 159.0
7 TraesCS3B01G106800 chr1A 100.000 35 0 0 1 35 82087679 82087713 8.390000e-07 65.8
8 TraesCS3B01G106800 chr1A 100.000 35 0 0 1 35 577848946 577848912 8.390000e-07 65.8
9 TraesCS3B01G106800 chr1A 97.143 35 1 0 1 35 393482286 393482320 3.900000e-05 60.2
10 TraesCS3B01G106800 chr4A 98.366 857 9 4 2766 3621 5989479 5990331 0.000000e+00 1500.0
11 TraesCS3B01G106800 chr4A 93.605 172 11 0 766 937 696730020 696729849 1.290000e-64 257.0
12 TraesCS3B01G106800 chr4A 89.394 132 11 3 3251 3381 5989832 5989961 2.890000e-36 163.0
13 TraesCS3B01G106800 chr3A 92.901 986 58 7 1781 2766 57882516 57883489 0.000000e+00 1423.0
14 TraesCS3B01G106800 chr3A 87.290 535 53 12 927 1451 57873335 57873864 6.690000e-167 597.0
15 TraesCS3B01G106800 chr3A 91.536 319 22 3 1476 1790 57874974 57875291 5.550000e-118 435.0
16 TraesCS3B01G106800 chr3A 85.801 331 29 10 183 507 57872379 57872697 5.790000e-88 335.0
17 TraesCS3B01G106800 chr3A 100.000 35 0 0 1 35 712290756 712290790 8.390000e-07 65.8
18 TraesCS3B01G106800 chr7B 95.616 844 20 12 2765 3605 653352229 653353058 0.000000e+00 1338.0
19 TraesCS3B01G106800 chr7B 91.667 120 8 2 3251 3370 653352581 653352698 8.040000e-37 165.0
20 TraesCS3B01G106800 chr6D 90.960 885 42 14 2763 3621 387633144 387632272 0.000000e+00 1157.0
21 TraesCS3B01G106800 chr6D 92.778 180 13 0 762 941 311580699 311580520 9.970000e-66 261.0
22 TraesCS3B01G106800 chrUn 91.471 680 34 13 2764 3437 310568560 310567899 0.000000e+00 913.0
23 TraesCS3B01G106800 chrUn 92.405 158 4 6 3466 3621 310567821 310567670 6.090000e-53 219.0
24 TraesCS3B01G106800 chr2A 91.471 680 34 13 2764 3437 771741953 771741292 0.000000e+00 913.0
25 TraesCS3B01G106800 chr2A 91.471 680 34 13 2764 3437 771758798 771758137 0.000000e+00 913.0
26 TraesCS3B01G106800 chr2A 92.405 158 4 6 3466 3621 771741214 771741063 6.090000e-53 219.0
27 TraesCS3B01G106800 chr2A 92.405 158 4 6 3466 3621 771758059 771757908 6.090000e-53 219.0
28 TraesCS3B01G106800 chr2A 90.217 92 7 2 45 135 779474190 779474100 6.350000e-23 119.0
29 TraesCS3B01G106800 chr2A 89.130 92 8 2 45 135 779589045 779588955 2.950000e-21 113.0
30 TraesCS3B01G106800 chr6A 89.895 475 32 12 2998 3466 56064960 56064496 6.690000e-167 597.0
31 TraesCS3B01G106800 chr6A 92.965 398 25 3 2766 3162 56067843 56067448 8.720000e-161 577.0
32 TraesCS3B01G106800 chr6A 87.140 451 28 10 3165 3595 56066020 56065580 5.440000e-133 484.0
33 TraesCS3B01G106800 chr5A 84.058 414 44 18 2754 3159 578051164 578050765 2.640000e-101 379.0
34 TraesCS3B01G106800 chr5A 93.642 173 7 4 762 934 309685398 309685230 4.640000e-64 255.0
35 TraesCS3B01G106800 chr5D 95.294 170 8 0 761 930 296949524 296949355 1.660000e-68 270.0
36 TraesCS3B01G106800 chr5D 90.860 186 16 1 743 927 66744920 66744735 7.760000e-62 248.0
37 TraesCS3B01G106800 chr5D 100.000 32 0 0 3 34 483627022 483627053 3.900000e-05 60.2
38 TraesCS3B01G106800 chr1D 94.220 173 9 1 759 930 249557347 249557175 2.770000e-66 263.0
39 TraesCS3B01G106800 chr1D 92.697 178 12 1 765 941 427826920 427827097 4.640000e-64 255.0
40 TraesCS3B01G106800 chr2B 94.152 171 10 0 766 936 237581571 237581401 9.970000e-66 261.0
41 TraesCS3B01G106800 chr4B 93.605 172 11 0 756 927 407061164 407061335 1.290000e-64 257.0
42 TraesCS3B01G106800 chr7D 83.682 239 13 9 3403 3621 87078095 87077863 6.130000e-48 202.0
43 TraesCS3B01G106800 chr5B 94.737 95 3 2 45 137 695419265 695419359 2.910000e-31 147.0
44 TraesCS3B01G106800 chr5B 94.737 95 3 2 45 137 695772373 695772467 2.910000e-31 147.0
45 TraesCS3B01G106800 chr5B 97.143 35 1 0 1 35 454353502 454353536 3.900000e-05 60.2
46 TraesCS3B01G106800 chr4D 100.000 34 0 0 1 34 347505959 347505926 3.020000e-06 63.9
47 TraesCS3B01G106800 chr4D 97.059 34 1 0 1 34 220902442 220902475 1.400000e-04 58.4
48 TraesCS3B01G106800 chr1B 97.059 34 1 0 1 34 504676992 504677025 1.400000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G106800 chr3B 72468793 72472413 3620 False 6687.000000 6687 100.000000 1 3621 1 chr3B.!!$F1 3620
1 TraesCS3B01G106800 chr3D 46263563 46265792 2229 False 995.333333 1827 91.142333 129 2766 3 chr3D.!!$F1 2637
2 TraesCS3B01G106800 chr1A 42224187 42225039 852 True 840.500000 1522 94.870500 2766 3621 2 chr1A.!!$R2 855
3 TraesCS3B01G106800 chr4A 5989479 5990331 852 False 831.500000 1500 93.880000 2766 3621 2 chr4A.!!$F1 855
4 TraesCS3B01G106800 chr3A 57882516 57883489 973 False 1423.000000 1423 92.901000 1781 2766 1 chr3A.!!$F1 985
5 TraesCS3B01G106800 chr3A 57872379 57875291 2912 False 455.666667 597 88.209000 183 1790 3 chr3A.!!$F3 1607
6 TraesCS3B01G106800 chr7B 653352229 653353058 829 False 751.500000 1338 93.641500 2765 3605 2 chr7B.!!$F1 840
7 TraesCS3B01G106800 chr6D 387632272 387633144 872 True 1157.000000 1157 90.960000 2763 3621 1 chr6D.!!$R2 858
8 TraesCS3B01G106800 chrUn 310567670 310568560 890 True 566.000000 913 91.938000 2764 3621 2 chrUn.!!$R1 857
9 TraesCS3B01G106800 chr2A 771741063 771741953 890 True 566.000000 913 91.938000 2764 3621 2 chr2A.!!$R3 857
10 TraesCS3B01G106800 chr2A 771757908 771758798 890 True 566.000000 913 91.938000 2764 3621 2 chr2A.!!$R4 857
11 TraesCS3B01G106800 chr6A 56064496 56067843 3347 True 552.666667 597 90.000000 2766 3595 3 chr6A.!!$R1 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 539 0.030235 TGCATTCGATCCCGTACGAG 59.970 55.0 18.76 2.72 39.59 4.18 F
581 687 0.463833 AAAGGCGTCGGATCCAATCC 60.464 55.0 13.41 6.88 46.22 3.01 F
594 700 0.618393 CCAATCCATGGCTTGGGGTT 60.618 55.0 31.65 11.26 46.45 4.11 F
991 1388 0.692476 TGCCGATCTGGGGGATAATG 59.308 55.0 5.87 0.00 38.63 1.90 F
1868 3396 0.915364 AAGCTGAGGGGGAATGTCTC 59.085 55.0 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2206 3735 0.323178 CTCAAGGAAGGCACTGGCAT 60.323 55.000 5.25 0.0 40.86 4.40 R
2360 3889 0.804364 TCCATCAAACGCAGCACATC 59.196 50.000 0.00 0.0 0.00 3.06 R
2446 3975 1.219522 CCACCAACGTCGACAGTTCC 61.220 60.000 17.16 0.0 0.00 3.62 R
2587 4116 4.449131 TGAGCTTCTTCATATGCCTCTTG 58.551 43.478 0.00 0.0 0.00 3.02 R
3548 6572 2.116238 GACTGGGGCTCCATACAGTTA 58.884 52.381 5.29 0.0 43.61 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.481195 TGCTGTCACAAAGGCCTC 57.519 55.556 5.23 0.00 0.00 4.70
18 19 1.597854 TGCTGTCACAAAGGCCTCG 60.598 57.895 5.23 2.40 0.00 4.63
19 20 1.598130 GCTGTCACAAAGGCCTCGT 60.598 57.895 5.23 3.22 0.00 4.18
20 21 1.845809 GCTGTCACAAAGGCCTCGTG 61.846 60.000 23.30 23.30 0.00 4.35
21 22 1.227823 TGTCACAAAGGCCTCGTGG 60.228 57.895 26.73 13.90 0.00 4.94
22 23 1.227853 GTCACAAAGGCCTCGTGGT 60.228 57.895 26.73 12.60 35.27 4.16
23 24 0.034337 GTCACAAAGGCCTCGTGGTA 59.966 55.000 26.73 12.19 35.27 3.25
24 25 0.759959 TCACAAAGGCCTCGTGGTAA 59.240 50.000 26.73 11.61 35.27 2.85
25 26 1.349688 TCACAAAGGCCTCGTGGTAAT 59.650 47.619 26.73 0.00 35.27 1.89
26 27 1.737793 CACAAAGGCCTCGTGGTAATC 59.262 52.381 22.10 0.00 35.27 1.75
27 28 1.628846 ACAAAGGCCTCGTGGTAATCT 59.371 47.619 5.23 0.00 35.27 2.40
28 29 2.009774 CAAAGGCCTCGTGGTAATCTG 58.990 52.381 5.23 0.00 35.27 2.90
29 30 1.568504 AAGGCCTCGTGGTAATCTGA 58.431 50.000 5.23 0.00 35.27 3.27
30 31 1.568504 AGGCCTCGTGGTAATCTGAA 58.431 50.000 0.00 0.00 35.27 3.02
31 32 1.482593 AGGCCTCGTGGTAATCTGAAG 59.517 52.381 0.00 0.00 35.27 3.02
32 33 1.291132 GCCTCGTGGTAATCTGAAGC 58.709 55.000 5.26 0.00 35.27 3.86
33 34 1.405526 GCCTCGTGGTAATCTGAAGCA 60.406 52.381 5.26 0.00 35.27 3.91
34 35 2.271800 CCTCGTGGTAATCTGAAGCAC 58.728 52.381 0.00 2.41 40.95 4.40
35 36 2.271800 CTCGTGGTAATCTGAAGCACC 58.728 52.381 6.20 3.24 41.22 5.01
36 37 0.999406 CGTGGTAATCTGAAGCACCG 59.001 55.000 6.20 0.00 41.22 4.94
37 38 1.369625 GTGGTAATCTGAAGCACCGG 58.630 55.000 0.00 0.00 38.98 5.28
38 39 0.392461 TGGTAATCTGAAGCACCGGC 60.392 55.000 0.00 0.00 41.61 6.13
48 49 2.817834 GCACCGGCGCACAGATTA 60.818 61.111 10.19 0.00 0.00 1.75
49 50 2.813179 GCACCGGCGCACAGATTAG 61.813 63.158 10.19 0.00 0.00 1.73
50 51 1.447838 CACCGGCGCACAGATTAGT 60.448 57.895 10.83 0.00 0.00 2.24
51 52 1.019278 CACCGGCGCACAGATTAGTT 61.019 55.000 10.83 0.00 0.00 2.24
52 53 0.533491 ACCGGCGCACAGATTAGTTA 59.467 50.000 10.83 0.00 0.00 2.24
53 54 1.138266 ACCGGCGCACAGATTAGTTAT 59.862 47.619 10.83 0.00 0.00 1.89
54 55 2.363038 ACCGGCGCACAGATTAGTTATA 59.637 45.455 10.83 0.00 0.00 0.98
55 56 3.006537 ACCGGCGCACAGATTAGTTATAT 59.993 43.478 10.83 0.00 0.00 0.86
56 57 3.367932 CCGGCGCACAGATTAGTTATATG 59.632 47.826 10.83 0.00 0.00 1.78
57 58 3.181530 CGGCGCACAGATTAGTTATATGC 60.182 47.826 10.83 0.00 0.00 3.14
58 59 3.125316 GGCGCACAGATTAGTTATATGCC 59.875 47.826 10.83 0.00 0.00 4.40
59 60 3.997021 GCGCACAGATTAGTTATATGCCT 59.003 43.478 0.30 0.00 0.00 4.75
60 61 5.168569 GCGCACAGATTAGTTATATGCCTA 58.831 41.667 0.30 0.00 0.00 3.93
61 62 5.062308 GCGCACAGATTAGTTATATGCCTAC 59.938 44.000 0.30 0.00 0.00 3.18
62 63 6.390721 CGCACAGATTAGTTATATGCCTACT 58.609 40.000 0.00 0.00 0.00 2.57
63 64 6.868864 CGCACAGATTAGTTATATGCCTACTT 59.131 38.462 0.00 0.00 0.00 2.24
64 65 7.385205 CGCACAGATTAGTTATATGCCTACTTT 59.615 37.037 0.00 0.00 0.00 2.66
65 66 9.057089 GCACAGATTAGTTATATGCCTACTTTT 57.943 33.333 0.00 0.00 0.00 2.27
80 81 9.686683 ATGCCTACTTTTCTAGTTGATTGTATT 57.313 29.630 0.00 0.00 38.33 1.89
81 82 9.162764 TGCCTACTTTTCTAGTTGATTGTATTC 57.837 33.333 0.00 0.00 38.33 1.75
82 83 9.162764 GCCTACTTTTCTAGTTGATTGTATTCA 57.837 33.333 0.00 0.00 38.33 2.57
91 92 9.725019 TCTAGTTGATTGTATTCAGTTTGATGT 57.275 29.630 0.00 0.00 0.00 3.06
98 99 9.736023 GATTGTATTCAGTTTGATGTAATTCCC 57.264 33.333 0.00 0.00 0.00 3.97
99 100 7.639113 TGTATTCAGTTTGATGTAATTCCCC 57.361 36.000 0.00 0.00 0.00 4.81
100 101 7.410174 TGTATTCAGTTTGATGTAATTCCCCT 58.590 34.615 0.00 0.00 0.00 4.79
101 102 7.893302 TGTATTCAGTTTGATGTAATTCCCCTT 59.107 33.333 0.00 0.00 0.00 3.95
102 103 7.797121 ATTCAGTTTGATGTAATTCCCCTTT 57.203 32.000 0.00 0.00 0.00 3.11
103 104 7.610580 TTCAGTTTGATGTAATTCCCCTTTT 57.389 32.000 0.00 0.00 0.00 2.27
104 105 7.610580 TCAGTTTGATGTAATTCCCCTTTTT 57.389 32.000 0.00 0.00 0.00 1.94
105 106 7.441017 TCAGTTTGATGTAATTCCCCTTTTTG 58.559 34.615 0.00 0.00 0.00 2.44
106 107 7.288852 TCAGTTTGATGTAATTCCCCTTTTTGA 59.711 33.333 0.00 0.00 0.00 2.69
107 108 7.599998 CAGTTTGATGTAATTCCCCTTTTTGAG 59.400 37.037 0.00 0.00 0.00 3.02
108 109 7.290014 AGTTTGATGTAATTCCCCTTTTTGAGT 59.710 33.333 0.00 0.00 0.00 3.41
109 110 8.581578 GTTTGATGTAATTCCCCTTTTTGAGTA 58.418 33.333 0.00 0.00 0.00 2.59
110 111 8.713708 TTGATGTAATTCCCCTTTTTGAGTAA 57.286 30.769 0.00 0.00 0.00 2.24
111 112 8.893563 TGATGTAATTCCCCTTTTTGAGTAAT 57.106 30.769 0.00 0.00 0.00 1.89
112 113 9.983024 TGATGTAATTCCCCTTTTTGAGTAATA 57.017 29.630 0.00 0.00 0.00 0.98
118 119 9.715119 AATTCCCCTTTTTGAGTAATATAAGCT 57.285 29.630 0.00 0.00 0.00 3.74
119 120 9.715119 ATTCCCCTTTTTGAGTAATATAAGCTT 57.285 29.630 3.48 3.48 0.00 3.74
120 121 9.541884 TTCCCCTTTTTGAGTAATATAAGCTTT 57.458 29.630 3.20 0.00 0.00 3.51
121 122 8.966868 TCCCCTTTTTGAGTAATATAAGCTTTG 58.033 33.333 3.20 0.00 0.00 2.77
122 123 8.966868 CCCCTTTTTGAGTAATATAAGCTTTGA 58.033 33.333 3.20 0.00 0.00 2.69
154 155 3.662247 AAACTGACGGAACCTACTCAG 57.338 47.619 0.00 0.00 36.90 3.35
175 176 7.669722 ACTCAGCCCTATTTATTCTCAACAAAA 59.330 33.333 0.00 0.00 0.00 2.44
176 177 8.415950 TCAGCCCTATTTATTCTCAACAAAAA 57.584 30.769 0.00 0.00 0.00 1.94
263 264 4.447342 ATGGGGCGAAAGGGCAGG 62.447 66.667 0.00 0.00 44.56 4.85
381 385 6.392625 CGGAGAGTTTGTATCTCAGGATAA 57.607 41.667 5.42 0.00 44.16 1.75
399 403 2.421877 AAGTGAGTCACTGCCCGACG 62.422 60.000 26.12 0.00 44.62 5.12
458 462 1.003233 ACCCTACCTTGTAACTGCAGC 59.997 52.381 15.27 0.00 0.00 5.25
462 466 2.276732 ACCTTGTAACTGCAGCACAT 57.723 45.000 19.22 5.46 0.00 3.21
493 506 1.078143 GGGAGGATGTTTCTGCGCT 60.078 57.895 9.73 0.00 0.00 5.92
500 513 1.194547 GATGTTTCTGCGCTCACGAAA 59.805 47.619 9.73 9.57 43.93 3.46
507 520 1.195448 CTGCGCTCACGAAATCACTTT 59.805 47.619 9.73 0.00 43.93 2.66
509 522 1.595609 CGCTCACGAAATCACTTTGC 58.404 50.000 0.00 0.00 43.93 3.68
511 524 2.413239 CGCTCACGAAATCACTTTGCAT 60.413 45.455 0.00 0.00 43.93 3.96
516 529 4.154015 TCACGAAATCACTTTGCATTCGAT 59.846 37.500 19.77 3.47 43.99 3.59
517 530 4.493350 CACGAAATCACTTTGCATTCGATC 59.507 41.667 19.77 0.00 43.99 3.69
521 534 1.086696 CACTTTGCATTCGATCCCGT 58.913 50.000 0.00 0.00 37.05 5.28
523 536 2.030457 CACTTTGCATTCGATCCCGTAC 59.970 50.000 0.00 0.00 37.05 3.67
525 538 0.456628 TTGCATTCGATCCCGTACGA 59.543 50.000 18.76 0.00 37.05 3.43
526 539 0.030235 TGCATTCGATCCCGTACGAG 59.970 55.000 18.76 2.72 39.59 4.18
529 542 2.728427 ATTCGATCCCGTACGAGCGC 62.728 60.000 18.76 0.00 41.28 5.92
531 544 2.353607 GATCCCGTACGAGCGCTG 60.354 66.667 18.48 10.31 0.00 5.18
532 545 4.570663 ATCCCGTACGAGCGCTGC 62.571 66.667 18.48 5.60 0.00 5.25
544 650 1.132640 GCGCTGCCGAAGTTGTTAG 59.867 57.895 0.00 0.00 36.29 2.34
558 664 1.889573 GTTAGGCTGCGGCTGATCC 60.890 63.158 18.85 0.00 39.30 3.36
578 684 1.376683 CCAAAGGCGTCGGATCCAA 60.377 57.895 13.41 0.00 0.00 3.53
579 685 0.748005 CCAAAGGCGTCGGATCCAAT 60.748 55.000 13.41 0.00 0.00 3.16
580 686 0.657840 CAAAGGCGTCGGATCCAATC 59.342 55.000 13.41 0.03 0.00 2.67
581 687 0.463833 AAAGGCGTCGGATCCAATCC 60.464 55.000 13.41 6.88 46.22 3.01
594 700 0.618393 CCAATCCATGGCTTGGGGTT 60.618 55.000 31.65 11.26 46.45 4.11
595 701 1.342874 CCAATCCATGGCTTGGGGTTA 60.343 52.381 31.65 2.98 46.45 2.85
596 702 2.465813 CAATCCATGGCTTGGGGTTAA 58.534 47.619 18.75 0.11 46.45 2.01
598 704 0.780637 TCCATGGCTTGGGGTTAACA 59.219 50.000 18.35 0.00 46.45 2.41
599 705 1.148027 TCCATGGCTTGGGGTTAACAA 59.852 47.619 18.35 0.00 46.45 2.83
600 706 1.275010 CCATGGCTTGGGGTTAACAAC 59.725 52.381 11.46 0.00 42.33 3.32
610 727 5.126699 TGGGGTTAACAACTTAAGAACCA 57.873 39.130 19.27 7.92 41.15 3.67
616 733 7.249858 GGTTAACAACTTAAGAACCAACGAAA 58.750 34.615 10.09 0.00 39.51 3.46
630 747 7.651704 AGAACCAACGAAACTGATTTAAATTGG 59.348 33.333 1.43 6.07 38.70 3.16
634 751 7.651704 CCAACGAAACTGATTTAAATTGGAACT 59.348 33.333 1.43 0.00 36.82 3.01
668 1057 4.536295 ACCCTCCCAAAATAGGTATTGG 57.464 45.455 0.00 0.00 44.61 3.16
669 1058 3.862309 ACCCTCCCAAAATAGGTATTGGT 59.138 43.478 4.06 0.00 43.71 3.67
679 1068 8.980143 CAAAATAGGTATTGGTTTTGGTACTG 57.020 34.615 0.00 0.00 37.70 2.74
681 1070 8.575649 AAATAGGTATTGGTTTTGGTACTGAG 57.424 34.615 0.00 0.00 0.00 3.35
682 1071 5.578157 AGGTATTGGTTTTGGTACTGAGT 57.422 39.130 0.00 0.00 0.00 3.41
683 1072 5.313712 AGGTATTGGTTTTGGTACTGAGTG 58.686 41.667 0.00 0.00 0.00 3.51
684 1073 5.067954 GGTATTGGTTTTGGTACTGAGTGT 58.932 41.667 0.00 0.00 0.00 3.55
685 1074 5.048991 GGTATTGGTTTTGGTACTGAGTGTG 60.049 44.000 0.00 0.00 0.00 3.82
686 1075 3.916359 TGGTTTTGGTACTGAGTGTGA 57.084 42.857 0.00 0.00 0.00 3.58
687 1076 4.223556 TGGTTTTGGTACTGAGTGTGAA 57.776 40.909 0.00 0.00 0.00 3.18
699 1096 0.816825 AGTGTGAAGTGGCAGCACTG 60.817 55.000 13.86 0.00 38.74 3.66
700 1097 0.815213 GTGTGAAGTGGCAGCACTGA 60.815 55.000 13.86 0.00 35.30 3.41
714 1111 1.872313 GCACTGATAGCTTCATGCCTC 59.128 52.381 0.00 0.00 44.23 4.70
727 1124 5.994054 GCTTCATGCCTCAAGTCTGAATATA 59.006 40.000 0.00 0.00 35.15 0.86
730 1127 6.753180 TCATGCCTCAAGTCTGAATATAGTC 58.247 40.000 0.00 0.00 0.00 2.59
735 1132 6.364706 GCCTCAAGTCTGAATATAGTCGATTG 59.635 42.308 0.00 0.00 0.00 2.67
736 1133 6.865726 CCTCAAGTCTGAATATAGTCGATTGG 59.134 42.308 0.00 0.00 0.00 3.16
738 1135 7.203218 TCAAGTCTGAATATAGTCGATTGGTG 58.797 38.462 0.00 0.00 0.00 4.17
739 1136 6.716934 AGTCTGAATATAGTCGATTGGTGT 57.283 37.500 0.00 0.00 0.00 4.16
740 1137 7.818997 AGTCTGAATATAGTCGATTGGTGTA 57.181 36.000 0.00 0.00 0.00 2.90
741 1138 7.649973 AGTCTGAATATAGTCGATTGGTGTAC 58.350 38.462 0.00 0.00 0.00 2.90
743 1140 8.082852 GTCTGAATATAGTCGATTGGTGTACAT 58.917 37.037 0.00 0.00 0.00 2.29
747 1144 9.856488 GAATATAGTCGATTGGTGTACATACAT 57.144 33.333 0.00 0.00 38.63 2.29
752 1149 6.423905 AGTCGATTGGTGTACATACATAATGC 59.576 38.462 0.00 0.00 39.39 3.56
776 1173 5.813513 TTTTTACTTTCTACTCCCTCCGT 57.186 39.130 0.00 0.00 0.00 4.69
777 1174 5.813513 TTTTACTTTCTACTCCCTCCGTT 57.186 39.130 0.00 0.00 0.00 4.44
778 1175 5.397142 TTTACTTTCTACTCCCTCCGTTC 57.603 43.478 0.00 0.00 0.00 3.95
779 1176 2.177734 ACTTTCTACTCCCTCCGTTCC 58.822 52.381 0.00 0.00 0.00 3.62
780 1177 2.225318 ACTTTCTACTCCCTCCGTTCCT 60.225 50.000 0.00 0.00 0.00 3.36
781 1178 3.011032 ACTTTCTACTCCCTCCGTTCCTA 59.989 47.826 0.00 0.00 0.00 2.94
782 1179 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
783 1180 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
784 1181 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
785 1182 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
786 1183 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
787 1184 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
788 1185 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
789 1186 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
790 1187 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
791 1188 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
792 1189 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
793 1190 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
794 1191 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
795 1192 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
796 1193 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
823 1220 9.658799 AGAGATTTCAATATGGATTACATACGG 57.341 33.333 0.00 0.00 44.41 4.02
824 1221 9.653287 GAGATTTCAATATGGATTACATACGGA 57.347 33.333 0.00 0.00 44.41 4.69
825 1222 9.658799 AGATTTCAATATGGATTACATACGGAG 57.341 33.333 0.00 0.00 44.41 4.63
826 1223 7.667043 TTTCAATATGGATTACATACGGAGC 57.333 36.000 0.00 0.00 44.41 4.70
827 1224 6.353404 TCAATATGGATTACATACGGAGCA 57.647 37.500 0.00 0.00 44.41 4.26
828 1225 6.764379 TCAATATGGATTACATACGGAGCAA 58.236 36.000 0.00 0.00 44.41 3.91
829 1226 7.220740 TCAATATGGATTACATACGGAGCAAA 58.779 34.615 0.00 0.00 44.41 3.68
830 1227 7.717436 TCAATATGGATTACATACGGAGCAAAA 59.283 33.333 0.00 0.00 44.41 2.44
831 1228 8.514594 CAATATGGATTACATACGGAGCAAAAT 58.485 33.333 0.00 0.00 44.41 1.82
832 1229 9.733556 AATATGGATTACATACGGAGCAAAATA 57.266 29.630 0.00 0.00 44.41 1.40
833 1230 9.733556 ATATGGATTACATACGGAGCAAAATAA 57.266 29.630 0.00 0.00 44.41 1.40
834 1231 7.867305 TGGATTACATACGGAGCAAAATAAA 57.133 32.000 0.00 0.00 0.00 1.40
835 1232 8.458573 TGGATTACATACGGAGCAAAATAAAT 57.541 30.769 0.00 0.00 0.00 1.40
836 1233 8.349245 TGGATTACATACGGAGCAAAATAAATG 58.651 33.333 0.00 0.00 0.00 2.32
837 1234 8.564574 GGATTACATACGGAGCAAAATAAATGA 58.435 33.333 0.00 0.00 0.00 2.57
838 1235 9.944663 GATTACATACGGAGCAAAATAAATGAA 57.055 29.630 0.00 0.00 0.00 2.57
840 1237 9.944663 TTACATACGGAGCAAAATAAATGAATC 57.055 29.630 0.00 0.00 0.00 2.52
841 1238 8.225603 ACATACGGAGCAAAATAAATGAATCT 57.774 30.769 0.00 0.00 0.00 2.40
842 1239 9.337396 ACATACGGAGCAAAATAAATGAATCTA 57.663 29.630 0.00 0.00 0.00 1.98
846 1243 9.561069 ACGGAGCAAAATAAATGAATCTATACT 57.439 29.630 0.00 0.00 0.00 2.12
869 1266 8.839310 ACTCTAAAATGCATCTACATACATCC 57.161 34.615 0.00 0.00 0.00 3.51
870 1267 7.600375 ACTCTAAAATGCATCTACATACATCCG 59.400 37.037 0.00 0.00 0.00 4.18
871 1268 7.441836 TCTAAAATGCATCTACATACATCCGT 58.558 34.615 0.00 0.00 0.00 4.69
872 1269 8.581578 TCTAAAATGCATCTACATACATCCGTA 58.418 33.333 0.00 0.00 0.00 4.02
873 1270 9.371136 CTAAAATGCATCTACATACATCCGTAT 57.629 33.333 0.00 0.00 38.96 3.06
884 1281 6.951256 CATACATCCGTATGTGGTTCATAG 57.049 41.667 3.56 0.00 46.70 2.23
885 1282 6.455647 CATACATCCGTATGTGGTTCATAGT 58.544 40.000 3.56 0.00 46.70 2.12
886 1283 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
887 1284 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
888 1285 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
889 1286 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
890 1287 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
891 1288 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
892 1289 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
893 1290 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
894 1291 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
895 1292 5.344743 TGTGGTTCATAGTGGAATCTCTC 57.655 43.478 0.00 0.00 0.00 3.20
896 1293 4.162320 TGTGGTTCATAGTGGAATCTCTCC 59.838 45.833 0.00 0.00 45.64 3.71
897 1294 7.548782 ATGTGGTTCATAGTGGAATCTCTCCA 61.549 42.308 0.00 0.00 42.66 3.86
898 1295 8.954344 ATGTGGTTCATAGTGGAATCTCTCCAA 61.954 40.741 0.00 0.00 44.66 3.53
917 1314 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
918 1315 8.974238 TCTCCAAAGACTTATATTTAGGAACGA 58.026 33.333 0.00 0.00 0.00 3.85
919 1316 9.595823 CTCCAAAGACTTATATTTAGGAACGAA 57.404 33.333 0.00 0.00 0.00 3.85
920 1317 9.595823 TCCAAAGACTTATATTTAGGAACGAAG 57.404 33.333 0.00 0.00 0.00 3.79
921 1318 8.827677 CCAAAGACTTATATTTAGGAACGAAGG 58.172 37.037 0.00 0.00 0.00 3.46
922 1319 8.827677 CAAAGACTTATATTTAGGAACGAAGGG 58.172 37.037 0.00 0.00 0.00 3.95
923 1320 7.909485 AGACTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
924 1321 7.953752 AGACTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
925 1322 7.564292 AGACTTATATTTAGGAACGAAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
933 1330 4.607239 AGGAACGAAGGGAGTAATAGTCA 58.393 43.478 0.00 0.00 0.00 3.41
945 1342 6.458888 GGGAGTAATAGTCATGCTTTTCTTGC 60.459 42.308 0.00 0.00 0.00 4.01
979 1376 2.860628 CTACGCGCAGTTGCCGATC 61.861 63.158 5.73 0.00 37.85 3.69
991 1388 0.692476 TGCCGATCTGGGGGATAATG 59.308 55.000 5.87 0.00 38.63 1.90
1023 1420 2.283529 GCTGTTCGAGACCCCCTCA 61.284 63.158 0.00 0.00 42.06 3.86
1045 1442 2.936498 GGCTTCGCAGTTTTCTATGCTA 59.064 45.455 0.00 0.00 40.34 3.49
1092 1489 4.395519 ATGCAGGTGCGTGCTTTA 57.604 50.000 16.17 0.00 44.32 1.85
1093 1490 2.639970 ATGCAGGTGCGTGCTTTAA 58.360 47.368 16.17 0.00 44.32 1.52
1094 1491 1.176527 ATGCAGGTGCGTGCTTTAAT 58.823 45.000 16.17 1.07 44.32 1.40
1095 1492 0.958091 TGCAGGTGCGTGCTTTAATT 59.042 45.000 16.17 0.00 44.32 1.40
1096 1493 1.339610 TGCAGGTGCGTGCTTTAATTT 59.660 42.857 16.17 0.00 44.32 1.82
1107 1504 5.915196 GCGTGCTTTAATTTGTTCTTCTTCT 59.085 36.000 0.00 0.00 0.00 2.85
1143 1548 5.522456 TCATGTGCTTTGTTGATCTTGTTC 58.478 37.500 0.00 0.00 0.00 3.18
1144 1549 4.305989 TGTGCTTTGTTGATCTTGTTCC 57.694 40.909 0.00 0.00 0.00 3.62
1148 1553 5.460091 GTGCTTTGTTGATCTTGTTCCTTTC 59.540 40.000 0.00 0.00 0.00 2.62
1227 1635 6.095440 CAGAATTTATGGGGAAACTTCGTCAT 59.905 38.462 0.00 0.00 0.00 3.06
1228 1636 6.318900 AGAATTTATGGGGAAACTTCGTCATC 59.681 38.462 0.00 0.00 0.00 2.92
1229 1637 4.561500 TTATGGGGAAACTTCGTCATCA 57.438 40.909 0.00 0.00 0.00 3.07
1230 1638 3.652057 ATGGGGAAACTTCGTCATCAT 57.348 42.857 0.00 0.00 0.00 2.45
1269 1677 4.083484 CCATGTTAGTTCCACCTTCGTTTC 60.083 45.833 0.00 0.00 0.00 2.78
1272 1681 1.137697 AGTTCCACCTTCGTTTCCCT 58.862 50.000 0.00 0.00 0.00 4.20
1286 1695 6.067263 TCGTTTCCCTTTTCTATTGTTGTG 57.933 37.500 0.00 0.00 0.00 3.33
1315 1725 7.981789 TCTTAATACTGCTTATCACCAACTCAG 59.018 37.037 0.00 0.00 0.00 3.35
1318 1728 3.076621 CTGCTTATCACCAACTCAGCAA 58.923 45.455 0.00 0.00 36.85 3.91
1355 1769 8.628280 TCACATGATTGACATTTTTGTCACTTA 58.372 29.630 8.24 1.50 46.98 2.24
1395 1811 4.320714 GCATTCTGAACACAAGCTCATTGA 60.321 41.667 0.00 0.00 41.83 2.57
1399 1815 6.732531 TCTGAACACAAGCTCATTGATTAG 57.267 37.500 0.00 0.00 41.83 1.73
1472 2997 1.204941 GCCACTCGCTTCTTTCTCCTA 59.795 52.381 0.00 0.00 0.00 2.94
1478 3003 5.814705 CACTCGCTTCTTTCTCCTATTTGAT 59.185 40.000 0.00 0.00 0.00 2.57
1479 3004 6.314896 CACTCGCTTCTTTCTCCTATTTGATT 59.685 38.462 0.00 0.00 0.00 2.57
1480 3005 6.314896 ACTCGCTTCTTTCTCCTATTTGATTG 59.685 38.462 0.00 0.00 0.00 2.67
1481 3006 6.406370 TCGCTTCTTTCTCCTATTTGATTGA 58.594 36.000 0.00 0.00 0.00 2.57
1482 3007 7.050377 TCGCTTCTTTCTCCTATTTGATTGAT 58.950 34.615 0.00 0.00 0.00 2.57
1483 3008 7.011763 TCGCTTCTTTCTCCTATTTGATTGATG 59.988 37.037 0.00 0.00 0.00 3.07
1551 3076 4.694037 ACTTCCAAGTATTTACGGACAAGC 59.306 41.667 0.00 0.00 37.52 4.01
1565 3090 2.961062 GGACAAGCCTGATGCCATTAAT 59.039 45.455 0.00 0.00 42.71 1.40
1578 3103 4.067192 TGCCATTAATCTCGATGATGGTG 58.933 43.478 17.06 4.74 37.51 4.17
1595 3120 2.143925 GGTGTCAACAGTCAGCTTACC 58.856 52.381 0.00 0.00 0.00 2.85
1643 3168 3.520187 GCAGAAATTGGCTGTTGGG 57.480 52.632 9.52 0.00 35.81 4.12
1697 3225 4.536489 AGATTGGTAAGTGTAAGCTCCCTT 59.464 41.667 0.00 0.00 35.05 3.95
1718 3246 3.749665 TTTTTCCACCATTGGCTCAAG 57.250 42.857 1.54 0.00 43.56 3.02
1868 3396 0.915364 AAGCTGAGGGGGAATGTCTC 59.085 55.000 0.00 0.00 0.00 3.36
1916 3444 5.048153 TCGTAGATCGATATGGCTTTGAG 57.952 43.478 2.01 0.00 44.01 3.02
1958 3486 3.181440 TGAGATCACCACTTTGCCTTCTT 60.181 43.478 0.00 0.00 0.00 2.52
2002 3530 6.095377 GCTTAATGCTTTATTGCTCACAGTT 58.905 36.000 9.22 0.00 38.95 3.16
2014 3542 2.348872 GCTCACAGTTCATGAACACACG 60.349 50.000 33.92 22.61 43.47 4.49
2029 3557 4.434713 ACACACGCTTTCTGAAAGTTTT 57.565 36.364 26.02 11.70 40.64 2.43
2040 3568 7.489574 TTTCTGAAAGTTTTTGCACTTTGTT 57.510 28.000 4.89 0.00 45.23 2.83
2061 3590 1.601412 GCTGACCAAAGCTTCAACTGC 60.601 52.381 0.00 4.43 40.20 4.40
2070 3599 3.874392 AGCTTCAACTGCAACAAGTTT 57.126 38.095 0.00 0.00 38.34 2.66
2074 3603 1.134848 TCAACTGCAACAAGTTTGCCC 60.135 47.619 6.53 0.00 44.32 5.36
2082 3611 3.058777 GCAACAAGTTTGCCCAATTGATG 60.059 43.478 7.12 0.00 39.38 3.07
2083 3612 2.769893 ACAAGTTTGCCCAATTGATGC 58.230 42.857 7.12 9.88 0.00 3.91
2084 3613 2.104451 ACAAGTTTGCCCAATTGATGCA 59.896 40.909 15.80 15.80 0.00 3.96
2085 3614 3.244630 ACAAGTTTGCCCAATTGATGCAT 60.245 39.130 19.07 0.00 34.51 3.96
2086 3615 3.255969 AGTTTGCCCAATTGATGCATC 57.744 42.857 20.14 20.14 34.51 3.91
2087 3616 2.835764 AGTTTGCCCAATTGATGCATCT 59.164 40.909 26.32 16.89 34.51 2.90
2205 3734 3.984193 ATTGGTGAGAGCTGGCGCC 62.984 63.158 22.73 22.73 36.60 6.53
2222 3751 1.304713 CCATGCCAGTGCCTTCCTT 60.305 57.895 0.00 0.00 36.33 3.36
2269 3798 1.068541 GGATTGGGACACGCTGAAAAC 60.069 52.381 0.00 0.00 39.29 2.43
2341 3870 1.647346 GATCCGCACGTGGTAAATCA 58.353 50.000 18.88 0.00 0.00 2.57
2380 3909 1.402968 GATGTGCTGCGTTTGATGGAT 59.597 47.619 0.00 0.00 0.00 3.41
2446 3975 3.250762 TGTTTCAGATGTTTTCAGCGGAG 59.749 43.478 0.00 0.00 40.83 4.63
2507 4036 3.725797 AGATTGTGGGATCATGAAGGGAT 59.274 43.478 0.00 0.00 0.00 3.85
2527 4056 5.454897 GGGATCTGTTGGGAGGTTCTATAAC 60.455 48.000 0.00 0.00 34.66 1.89
2556 4085 8.090788 ACTGTGTTTATGTATCAATCTAGGGT 57.909 34.615 0.00 0.00 0.00 4.34
2587 4116 0.109039 GACGACTGTCAAGGAGGCTC 60.109 60.000 5.78 5.78 44.82 4.70
2614 4143 3.001736 GGCATATGAAGAAGCTCAACGAC 59.998 47.826 6.97 0.00 0.00 4.34
2682 4211 4.346129 CTGGTATAACGTACGTGAGGAAC 58.654 47.826 23.57 13.59 0.00 3.62
2692 4221 1.021390 CGTGAGGAACCCATGTGCTC 61.021 60.000 0.00 0.00 34.29 4.26
3605 6629 1.326328 CATCAGATCAGCTCCCTCGA 58.674 55.000 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.597854 CGAGGCCTTTGTGACAGCA 60.598 57.895 6.77 0.00 0.00 4.41
1 2 1.598130 ACGAGGCCTTTGTGACAGC 60.598 57.895 6.77 0.00 0.00 4.40
3 4 1.227823 CCACGAGGCCTTTGTGACA 60.228 57.895 30.33 0.00 42.87 3.58
4 5 0.034337 TACCACGAGGCCTTTGTGAC 59.966 55.000 30.33 8.52 42.87 3.67
5 6 0.759959 TTACCACGAGGCCTTTGTGA 59.240 50.000 30.33 15.43 42.87 3.58
6 7 1.737793 GATTACCACGAGGCCTTTGTG 59.262 52.381 24.79 24.79 40.36 3.33
8 9 2.009774 CAGATTACCACGAGGCCTTTG 58.990 52.381 6.77 7.62 39.06 2.77
9 10 1.906574 TCAGATTACCACGAGGCCTTT 59.093 47.619 6.77 0.00 39.06 3.11
10 11 1.568504 TCAGATTACCACGAGGCCTT 58.431 50.000 6.77 0.00 39.06 4.35
11 12 1.482593 CTTCAGATTACCACGAGGCCT 59.517 52.381 3.86 3.86 39.06 5.19
12 13 1.941325 CTTCAGATTACCACGAGGCC 58.059 55.000 0.00 0.00 39.06 5.19
13 14 1.291132 GCTTCAGATTACCACGAGGC 58.709 55.000 0.00 0.00 39.06 4.70
14 15 2.271800 GTGCTTCAGATTACCACGAGG 58.728 52.381 0.00 0.00 42.21 4.63
15 16 2.271800 GGTGCTTCAGATTACCACGAG 58.728 52.381 0.00 0.00 33.42 4.18
16 17 1.403647 CGGTGCTTCAGATTACCACGA 60.404 52.381 0.00 0.00 32.75 4.35
17 18 0.999406 CGGTGCTTCAGATTACCACG 59.001 55.000 0.00 0.00 32.75 4.94
18 19 1.369625 CCGGTGCTTCAGATTACCAC 58.630 55.000 0.00 0.00 32.75 4.16
19 20 0.392461 GCCGGTGCTTCAGATTACCA 60.392 55.000 1.90 0.00 32.75 3.25
20 21 1.429148 CGCCGGTGCTTCAGATTACC 61.429 60.000 0.00 0.00 34.43 2.85
21 22 2.006772 CGCCGGTGCTTCAGATTAC 58.993 57.895 0.00 0.00 34.43 1.89
22 23 1.813753 GCGCCGGTGCTTCAGATTA 60.814 57.895 32.27 0.00 34.43 1.75
23 24 3.127533 GCGCCGGTGCTTCAGATT 61.128 61.111 32.27 0.00 34.43 2.40
24 25 4.393155 TGCGCCGGTGCTTCAGAT 62.393 61.111 37.39 0.00 35.36 2.90
29 30 2.796483 TAATCTGTGCGCCGGTGCTT 62.796 55.000 37.39 25.61 35.36 3.91
30 31 3.309436 TAATCTGTGCGCCGGTGCT 62.309 57.895 37.39 20.71 35.36 4.40
31 32 2.813179 CTAATCTGTGCGCCGGTGC 61.813 63.158 32.83 32.83 0.00 5.01
32 33 1.019278 AACTAATCTGTGCGCCGGTG 61.019 55.000 11.67 11.67 0.00 4.94
33 34 0.533491 TAACTAATCTGTGCGCCGGT 59.467 50.000 4.18 0.00 0.00 5.28
34 35 1.865865 ATAACTAATCTGTGCGCCGG 58.134 50.000 4.18 0.00 0.00 6.13
35 36 3.181530 GCATATAACTAATCTGTGCGCCG 60.182 47.826 4.18 0.00 0.00 6.46
36 37 3.125316 GGCATATAACTAATCTGTGCGCC 59.875 47.826 4.18 0.00 32.23 6.53
37 38 3.997021 AGGCATATAACTAATCTGTGCGC 59.003 43.478 0.00 0.00 32.23 6.09
38 39 6.390721 AGTAGGCATATAACTAATCTGTGCG 58.609 40.000 0.00 0.00 32.23 5.34
39 40 8.608844 AAAGTAGGCATATAACTAATCTGTGC 57.391 34.615 0.00 0.00 0.00 4.57
54 55 9.686683 AATACAATCAACTAGAAAAGTAGGCAT 57.313 29.630 0.00 0.00 37.50 4.40
55 56 9.162764 GAATACAATCAACTAGAAAAGTAGGCA 57.837 33.333 0.00 0.00 37.50 4.75
56 57 9.162764 TGAATACAATCAACTAGAAAAGTAGGC 57.837 33.333 0.00 0.00 37.50 3.93
65 66 9.725019 ACATCAAACTGAATACAATCAACTAGA 57.275 29.630 0.00 0.00 0.00 2.43
72 73 9.736023 GGGAATTACATCAAACTGAATACAATC 57.264 33.333 0.00 0.00 0.00 2.67
73 74 8.695456 GGGGAATTACATCAAACTGAATACAAT 58.305 33.333 0.00 0.00 0.00 2.71
74 75 7.893302 AGGGGAATTACATCAAACTGAATACAA 59.107 33.333 0.00 0.00 0.00 2.41
75 76 7.410174 AGGGGAATTACATCAAACTGAATACA 58.590 34.615 0.00 0.00 0.00 2.29
76 77 7.881775 AGGGGAATTACATCAAACTGAATAC 57.118 36.000 0.00 0.00 0.00 1.89
77 78 8.893563 AAAGGGGAATTACATCAAACTGAATA 57.106 30.769 0.00 0.00 0.00 1.75
78 79 7.797121 AAAGGGGAATTACATCAAACTGAAT 57.203 32.000 0.00 0.00 0.00 2.57
79 80 7.610580 AAAAGGGGAATTACATCAAACTGAA 57.389 32.000 0.00 0.00 0.00 3.02
80 81 7.288852 TCAAAAAGGGGAATTACATCAAACTGA 59.711 33.333 0.00 0.00 0.00 3.41
81 82 7.441017 TCAAAAAGGGGAATTACATCAAACTG 58.559 34.615 0.00 0.00 0.00 3.16
82 83 7.290014 ACTCAAAAAGGGGAATTACATCAAACT 59.710 33.333 0.00 0.00 0.00 2.66
83 84 7.441836 ACTCAAAAAGGGGAATTACATCAAAC 58.558 34.615 0.00 0.00 0.00 2.93
84 85 7.610580 ACTCAAAAAGGGGAATTACATCAAA 57.389 32.000 0.00 0.00 0.00 2.69
85 86 8.713708 TTACTCAAAAAGGGGAATTACATCAA 57.286 30.769 0.00 0.00 0.00 2.57
86 87 8.893563 ATTACTCAAAAAGGGGAATTACATCA 57.106 30.769 0.00 0.00 0.00 3.07
92 93 9.715119 AGCTTATATTACTCAAAAAGGGGAATT 57.285 29.630 0.00 0.00 0.00 2.17
93 94 9.715119 AAGCTTATATTACTCAAAAAGGGGAAT 57.285 29.630 0.00 0.00 0.00 3.01
94 95 9.541884 AAAGCTTATATTACTCAAAAAGGGGAA 57.458 29.630 0.00 0.00 0.00 3.97
95 96 8.966868 CAAAGCTTATATTACTCAAAAAGGGGA 58.033 33.333 0.00 0.00 0.00 4.81
96 97 8.966868 TCAAAGCTTATATTACTCAAAAAGGGG 58.033 33.333 0.00 0.00 0.00 4.79
132 133 4.377897 CTGAGTAGGTTCCGTCAGTTTTT 58.622 43.478 9.30 0.00 33.20 1.94
133 134 3.802675 GCTGAGTAGGTTCCGTCAGTTTT 60.803 47.826 15.15 0.00 38.96 2.43
134 135 2.288886 GCTGAGTAGGTTCCGTCAGTTT 60.289 50.000 15.15 0.00 38.96 2.66
135 136 1.272769 GCTGAGTAGGTTCCGTCAGTT 59.727 52.381 15.15 0.00 38.96 3.16
136 137 0.889306 GCTGAGTAGGTTCCGTCAGT 59.111 55.000 15.15 0.00 38.96 3.41
140 141 0.333993 TAGGGCTGAGTAGGTTCCGT 59.666 55.000 0.00 0.00 0.00 4.69
185 186 2.353579 GCCGTGTGTAGAGTGTGTTTTT 59.646 45.455 0.00 0.00 0.00 1.94
190 191 1.733041 CGGCCGTGTGTAGAGTGTG 60.733 63.158 19.50 0.00 0.00 3.82
289 290 1.731433 CGAGGTCGAGGCCGGATTAA 61.731 60.000 5.05 0.00 43.02 1.40
381 385 2.920645 CGTCGGGCAGTGACTCACT 61.921 63.158 5.82 5.82 46.51 3.41
399 403 1.944024 AGATCTCGAGTGATGGACGTC 59.056 52.381 13.13 7.13 0.00 4.34
462 466 3.052109 ACATCCTCCCCACATCTACTACA 60.052 47.826 0.00 0.00 0.00 2.74
476 489 0.391661 TGAGCGCAGAAACATCCTCC 60.392 55.000 11.47 0.00 0.00 4.30
493 506 3.496507 TCGAATGCAAAGTGATTTCGTGA 59.503 39.130 14.03 0.00 39.92 4.35
500 513 1.942657 CGGGATCGAATGCAAAGTGAT 59.057 47.619 0.00 0.00 39.00 3.06
507 520 0.030235 CTCGTACGGGATCGAATGCA 59.970 55.000 10.34 0.00 40.11 3.96
509 522 0.997226 CGCTCGTACGGGATCGAATG 60.997 60.000 21.77 0.00 40.11 2.67
511 524 2.711311 CGCTCGTACGGGATCGAA 59.289 61.111 21.77 0.00 40.11 3.71
521 534 3.277211 AACTTCGGCAGCGCTCGTA 62.277 57.895 7.13 1.65 0.00 3.43
523 536 4.139420 CAACTTCGGCAGCGCTCG 62.139 66.667 7.13 10.10 0.00 5.03
525 538 1.291877 CTAACAACTTCGGCAGCGCT 61.292 55.000 2.64 2.64 0.00 5.92
526 539 1.132640 CTAACAACTTCGGCAGCGC 59.867 57.895 0.00 0.00 0.00 5.92
529 542 0.798776 CAGCCTAACAACTTCGGCAG 59.201 55.000 0.00 0.00 40.11 4.85
531 544 1.502190 GCAGCCTAACAACTTCGGC 59.498 57.895 0.00 0.00 38.31 5.54
532 545 1.635663 CCGCAGCCTAACAACTTCGG 61.636 60.000 0.00 0.00 36.42 4.30
533 546 1.787847 CCGCAGCCTAACAACTTCG 59.212 57.895 0.00 0.00 0.00 3.79
534 547 0.955919 AGCCGCAGCCTAACAACTTC 60.956 55.000 0.00 0.00 41.25 3.01
535 548 1.073199 AGCCGCAGCCTAACAACTT 59.927 52.632 0.00 0.00 41.25 2.66
536 549 1.672356 CAGCCGCAGCCTAACAACT 60.672 57.895 0.00 0.00 41.25 3.16
581 687 2.247358 AGTTGTTAACCCCAAGCCATG 58.753 47.619 2.48 0.00 0.00 3.66
582 688 2.694616 AGTTGTTAACCCCAAGCCAT 57.305 45.000 2.48 0.00 0.00 4.40
594 700 7.333921 TCAGTTTCGTTGGTTCTTAAGTTGTTA 59.666 33.333 1.63 0.00 0.00 2.41
595 701 6.149807 TCAGTTTCGTTGGTTCTTAAGTTGTT 59.850 34.615 1.63 0.00 0.00 2.83
596 702 5.644636 TCAGTTTCGTTGGTTCTTAAGTTGT 59.355 36.000 1.63 0.00 0.00 3.32
598 704 6.937436 ATCAGTTTCGTTGGTTCTTAAGTT 57.063 33.333 1.63 0.00 0.00 2.66
599 705 6.937436 AATCAGTTTCGTTGGTTCTTAAGT 57.063 33.333 1.63 0.00 0.00 2.24
600 706 9.724839 TTTAAATCAGTTTCGTTGGTTCTTAAG 57.275 29.630 0.00 0.00 0.00 1.85
610 727 7.651704 CCAGTTCCAATTTAAATCAGTTTCGTT 59.348 33.333 0.10 0.00 0.00 3.85
627 744 5.968167 AGGGTAACATCTATACCAGTTCCAA 59.032 40.000 5.21 0.00 43.83 3.53
668 1057 4.035208 CCACTTCACACTCAGTACCAAAAC 59.965 45.833 0.00 0.00 0.00 2.43
669 1058 4.196193 CCACTTCACACTCAGTACCAAAA 58.804 43.478 0.00 0.00 0.00 2.44
678 1067 0.815213 GTGCTGCCACTTCACACTCA 60.815 55.000 0.00 0.00 38.93 3.41
679 1068 1.944778 GTGCTGCCACTTCACACTC 59.055 57.895 0.00 0.00 38.93 3.51
699 1096 3.808726 CAGACTTGAGGCATGAAGCTATC 59.191 47.826 0.00 0.00 44.79 2.08
700 1097 3.453717 TCAGACTTGAGGCATGAAGCTAT 59.546 43.478 0.00 0.00 44.79 2.97
714 1111 6.980978 ACACCAATCGACTATATTCAGACTTG 59.019 38.462 0.00 0.00 0.00 3.16
727 1124 6.423905 GCATTATGTATGTACACCAATCGACT 59.576 38.462 0.00 0.00 39.30 4.18
730 1127 6.785488 AGCATTATGTATGTACACCAATCG 57.215 37.500 0.00 0.00 39.30 3.34
765 1162 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
766 1163 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
767 1164 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
768 1165 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
769 1166 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
770 1167 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
771 1168 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
797 1194 9.658799 CCGTATGTAATCCATATTGAAATCTCT 57.341 33.333 0.00 0.00 38.29 3.10
798 1195 9.653287 TCCGTATGTAATCCATATTGAAATCTC 57.347 33.333 0.00 0.00 38.29 2.75
799 1196 9.658799 CTCCGTATGTAATCCATATTGAAATCT 57.341 33.333 0.00 0.00 38.29 2.40
800 1197 8.391106 GCTCCGTATGTAATCCATATTGAAATC 58.609 37.037 0.00 0.00 38.29 2.17
801 1198 7.882791 TGCTCCGTATGTAATCCATATTGAAAT 59.117 33.333 0.00 0.00 38.29 2.17
802 1199 7.220740 TGCTCCGTATGTAATCCATATTGAAA 58.779 34.615 0.00 0.00 38.29 2.69
803 1200 6.764379 TGCTCCGTATGTAATCCATATTGAA 58.236 36.000 0.00 0.00 38.29 2.69
804 1201 6.353404 TGCTCCGTATGTAATCCATATTGA 57.647 37.500 0.00 0.00 38.29 2.57
805 1202 7.433708 TTTGCTCCGTATGTAATCCATATTG 57.566 36.000 0.00 0.00 38.29 1.90
806 1203 8.635765 ATTTTGCTCCGTATGTAATCCATATT 57.364 30.769 0.00 0.00 38.29 1.28
807 1204 9.733556 TTATTTTGCTCCGTATGTAATCCATAT 57.266 29.630 0.00 0.00 38.29 1.78
808 1205 9.562408 TTTATTTTGCTCCGTATGTAATCCATA 57.438 29.630 0.00 0.00 34.86 2.74
809 1206 8.458573 TTTATTTTGCTCCGTATGTAATCCAT 57.541 30.769 0.00 0.00 37.58 3.41
810 1207 7.867305 TTTATTTTGCTCCGTATGTAATCCA 57.133 32.000 0.00 0.00 0.00 3.41
811 1208 8.564574 TCATTTATTTTGCTCCGTATGTAATCC 58.435 33.333 0.00 0.00 0.00 3.01
812 1209 9.944663 TTCATTTATTTTGCTCCGTATGTAATC 57.055 29.630 0.00 0.00 0.00 1.75
814 1211 9.944663 GATTCATTTATTTTGCTCCGTATGTAA 57.055 29.630 0.00 0.00 0.00 2.41
815 1212 9.337396 AGATTCATTTATTTTGCTCCGTATGTA 57.663 29.630 0.00 0.00 0.00 2.29
816 1213 8.225603 AGATTCATTTATTTTGCTCCGTATGT 57.774 30.769 0.00 0.00 0.00 2.29
820 1217 9.561069 AGTATAGATTCATTTATTTTGCTCCGT 57.439 29.630 0.00 0.00 0.00 4.69
843 1240 9.929180 GGATGTATGTAGATGCATTTTAGAGTA 57.071 33.333 0.00 0.00 35.26 2.59
844 1241 7.600375 CGGATGTATGTAGATGCATTTTAGAGT 59.400 37.037 0.00 0.00 35.26 3.24
845 1242 7.600375 ACGGATGTATGTAGATGCATTTTAGAG 59.400 37.037 0.00 0.00 35.26 2.43
846 1243 7.441836 ACGGATGTATGTAGATGCATTTTAGA 58.558 34.615 0.00 0.00 35.26 2.10
847 1244 7.658179 ACGGATGTATGTAGATGCATTTTAG 57.342 36.000 0.00 1.10 35.26 1.85
862 1259 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
863 1260 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
865 1262 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
866 1263 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
867 1264 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
868 1265 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
869 1266 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
870 1267 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
871 1268 6.042093 GGAGAGATTCCACTATGAACCACATA 59.958 42.308 0.00 0.00 46.01 2.29
872 1269 5.163258 GGAGAGATTCCACTATGAACCACAT 60.163 44.000 0.00 0.00 46.01 3.21
873 1270 4.162320 GGAGAGATTCCACTATGAACCACA 59.838 45.833 0.00 0.00 46.01 4.17
874 1271 4.698575 GGAGAGATTCCACTATGAACCAC 58.301 47.826 0.00 0.00 46.01 4.16
891 1288 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
892 1289 8.974238 TCGTTCCTAAATATAAGTCTTTGGAGA 58.026 33.333 0.00 0.00 0.00 3.71
893 1290 9.595823 TTCGTTCCTAAATATAAGTCTTTGGAG 57.404 33.333 0.00 0.00 0.00 3.86
894 1291 9.595823 CTTCGTTCCTAAATATAAGTCTTTGGA 57.404 33.333 0.00 0.00 0.00 3.53
895 1292 8.827677 CCTTCGTTCCTAAATATAAGTCTTTGG 58.172 37.037 0.00 0.00 0.00 3.28
896 1293 8.827677 CCCTTCGTTCCTAAATATAAGTCTTTG 58.172 37.037 0.00 0.00 0.00 2.77
897 1294 8.765517 TCCCTTCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
898 1295 8.315220 TCCCTTCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
899 1296 7.564292 ACTCCCTTCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
900 1297 7.724287 ACTCCCTTCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
901 1298 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
905 1302 9.377238 ACTATTACTCCCTTCGTTCCTAAATAT 57.623 33.333 0.00 0.00 0.00 1.28
906 1303 8.773033 ACTATTACTCCCTTCGTTCCTAAATA 57.227 34.615 0.00 0.00 0.00 1.40
907 1304 7.343833 TGACTATTACTCCCTTCGTTCCTAAAT 59.656 37.037 0.00 0.00 0.00 1.40
908 1305 6.664816 TGACTATTACTCCCTTCGTTCCTAAA 59.335 38.462 0.00 0.00 0.00 1.85
909 1306 6.189859 TGACTATTACTCCCTTCGTTCCTAA 58.810 40.000 0.00 0.00 0.00 2.69
910 1307 5.759059 TGACTATTACTCCCTTCGTTCCTA 58.241 41.667 0.00 0.00 0.00 2.94
911 1308 4.607239 TGACTATTACTCCCTTCGTTCCT 58.393 43.478 0.00 0.00 0.00 3.36
912 1309 4.996788 TGACTATTACTCCCTTCGTTCC 57.003 45.455 0.00 0.00 0.00 3.62
913 1310 4.745620 GCATGACTATTACTCCCTTCGTTC 59.254 45.833 0.00 0.00 0.00 3.95
914 1311 4.406003 AGCATGACTATTACTCCCTTCGTT 59.594 41.667 0.00 0.00 0.00 3.85
915 1312 3.961408 AGCATGACTATTACTCCCTTCGT 59.039 43.478 0.00 0.00 0.00 3.85
916 1313 4.592485 AGCATGACTATTACTCCCTTCG 57.408 45.455 0.00 0.00 0.00 3.79
917 1314 7.051000 AGAAAAGCATGACTATTACTCCCTTC 58.949 38.462 0.00 0.00 0.00 3.46
918 1315 6.963322 AGAAAAGCATGACTATTACTCCCTT 58.037 36.000 0.00 0.00 0.00 3.95
919 1316 6.567602 AGAAAAGCATGACTATTACTCCCT 57.432 37.500 0.00 0.00 0.00 4.20
920 1317 6.458888 GCAAGAAAAGCATGACTATTACTCCC 60.459 42.308 0.00 0.00 0.00 4.30
921 1318 6.490534 GCAAGAAAAGCATGACTATTACTCC 58.509 40.000 0.00 0.00 0.00 3.85
922 1319 6.183360 ACGCAAGAAAAGCATGACTATTACTC 60.183 38.462 0.00 0.00 43.62 2.59
923 1320 5.643777 ACGCAAGAAAAGCATGACTATTACT 59.356 36.000 0.00 0.00 43.62 2.24
924 1321 5.869350 ACGCAAGAAAAGCATGACTATTAC 58.131 37.500 0.00 0.00 43.62 1.89
925 1322 6.494893 AACGCAAGAAAAGCATGACTATTA 57.505 33.333 0.00 0.00 43.62 0.98
930 1327 2.097250 GCAAACGCAAGAAAAGCATGAC 60.097 45.455 0.00 0.00 43.62 3.06
933 1330 2.514205 AGCAAACGCAAGAAAAGCAT 57.486 40.000 0.00 0.00 43.62 3.79
945 1342 2.902484 GCGTAGACAAATCAAGCAAACG 59.098 45.455 0.00 0.00 0.00 3.60
979 1376 4.169059 TGATCAACACATTATCCCCCAG 57.831 45.455 0.00 0.00 0.00 4.45
991 1388 2.413239 CGAACAGCACCATGATCAACAC 60.413 50.000 0.00 0.00 0.00 3.32
1045 1442 3.385111 GGTTCGTAGAGACTGATCCCATT 59.615 47.826 0.00 0.00 38.43 3.16
1092 1489 5.743872 GTGACGCAAAGAAGAAGAACAAATT 59.256 36.000 0.00 0.00 0.00 1.82
1093 1490 5.066505 AGTGACGCAAAGAAGAAGAACAAAT 59.933 36.000 0.00 0.00 0.00 2.32
1094 1491 4.394920 AGTGACGCAAAGAAGAAGAACAAA 59.605 37.500 0.00 0.00 0.00 2.83
1095 1492 3.938963 AGTGACGCAAAGAAGAAGAACAA 59.061 39.130 0.00 0.00 0.00 2.83
1096 1493 3.531538 AGTGACGCAAAGAAGAAGAACA 58.468 40.909 0.00 0.00 0.00 3.18
1107 1504 1.798223 GCACATGAGTAGTGACGCAAA 59.202 47.619 0.00 0.00 38.96 3.68
1143 1548 2.294512 GACAACAAGAGCAAGGGAAAGG 59.705 50.000 0.00 0.00 0.00 3.11
1144 1549 2.951642 TGACAACAAGAGCAAGGGAAAG 59.048 45.455 0.00 0.00 0.00 2.62
1148 1553 2.886523 TCAATGACAACAAGAGCAAGGG 59.113 45.455 0.00 0.00 0.00 3.95
1186 1594 1.482954 TCTGCATGAGAGAGTGAGGG 58.517 55.000 0.00 0.00 0.00 4.30
1227 1635 2.580322 TGGTCTGCCCTATTTTCCATGA 59.420 45.455 0.00 0.00 0.00 3.07
1228 1636 3.017048 TGGTCTGCCCTATTTTCCATG 57.983 47.619 0.00 0.00 0.00 3.66
1229 1637 3.052642 ACATGGTCTGCCCTATTTTCCAT 60.053 43.478 0.00 0.00 35.02 3.41
1230 1638 2.311542 ACATGGTCTGCCCTATTTTCCA 59.688 45.455 0.00 0.00 0.00 3.53
1269 1677 9.981114 ATTAAGAAACACAACAATAGAAAAGGG 57.019 29.630 0.00 0.00 0.00 3.95
1286 1695 8.947115 AGTTGGTGATAAGCAGTATTAAGAAAC 58.053 33.333 0.00 0.00 0.00 2.78
1296 1706 2.038952 TGCTGAGTTGGTGATAAGCAGT 59.961 45.455 0.00 0.00 35.84 4.40
1297 1707 2.703416 TGCTGAGTTGGTGATAAGCAG 58.297 47.619 0.00 0.00 35.84 4.24
1318 1728 5.242171 TGTCAATCATGTGAGATGCAAGTTT 59.758 36.000 0.00 0.00 0.00 2.66
1355 1769 5.068723 CAGAATGCTCTCCTTAATGCCAAAT 59.931 40.000 0.00 0.00 0.00 2.32
1472 2997 8.543293 AATATGGACAAGGTCATCAATCAAAT 57.457 30.769 0.00 0.00 33.68 2.32
1478 3003 7.201723 CGAAATGAATATGGACAAGGTCATCAA 60.202 37.037 0.00 0.00 33.68 2.57
1479 3004 6.260714 CGAAATGAATATGGACAAGGTCATCA 59.739 38.462 0.00 0.00 33.68 3.07
1480 3005 6.260936 ACGAAATGAATATGGACAAGGTCATC 59.739 38.462 0.00 0.00 33.68 2.92
1481 3006 6.122277 ACGAAATGAATATGGACAAGGTCAT 58.878 36.000 0.00 0.00 33.68 3.06
1482 3007 5.496556 ACGAAATGAATATGGACAAGGTCA 58.503 37.500 0.00 0.00 33.68 4.02
1483 3008 6.436843 AACGAAATGAATATGGACAAGGTC 57.563 37.500 0.00 0.00 0.00 3.85
1551 3076 4.572909 TCATCGAGATTAATGGCATCAGG 58.427 43.478 0.00 0.00 0.00 3.86
1565 3090 2.562738 ACTGTTGACACCATCATCGAGA 59.437 45.455 0.00 0.00 37.11 4.04
1578 3103 2.059541 GTCGGTAAGCTGACTGTTGAC 58.940 52.381 10.02 5.50 45.22 3.18
1595 3120 0.445436 GCCACTTCAAGAGCATGTCG 59.555 55.000 0.00 0.00 0.00 4.35
1705 3233 5.143376 CTCAAAATTCTTGAGCCAATGGT 57.857 39.130 13.67 0.00 39.36 3.55
1916 3444 3.820467 TCACATTGTCCAGTTTGACATCC 59.180 43.478 0.00 0.00 44.27 3.51
1986 3514 6.580041 GTGTTCATGAACTGTGAGCAATAAAG 59.420 38.462 32.57 0.00 38.30 1.85
1992 3520 2.613595 GTGTGTTCATGAACTGTGAGCA 59.386 45.455 32.57 20.04 41.67 4.26
2002 3530 2.832563 TCAGAAAGCGTGTGTTCATGA 58.167 42.857 0.00 0.00 32.78 3.07
2014 3542 5.784750 AAGTGCAAAAACTTTCAGAAAGC 57.215 34.783 21.00 8.87 42.27 3.51
2040 3568 1.677576 CAGTTGAAGCTTTGGTCAGCA 59.322 47.619 0.00 0.00 42.84 4.41
2061 3590 3.058777 GCATCAATTGGGCAAACTTGTTG 60.059 43.478 15.29 0.00 0.00 3.33
2070 3599 2.815503 CGATAGATGCATCAATTGGGCA 59.184 45.455 27.81 22.10 42.43 5.36
2074 3603 5.874895 ATGACCGATAGATGCATCAATTG 57.125 39.130 27.81 14.42 39.76 2.32
2082 3611 2.061773 CCGTCAATGACCGATAGATGC 58.938 52.381 7.91 0.00 39.76 3.91
2083 3612 3.569548 CTCCGTCAATGACCGATAGATG 58.430 50.000 7.91 0.00 39.76 2.90
2084 3613 2.029828 GCTCCGTCAATGACCGATAGAT 60.030 50.000 7.91 0.00 39.76 1.98
2085 3614 1.337071 GCTCCGTCAATGACCGATAGA 59.663 52.381 7.91 0.00 39.76 1.98
2086 3615 1.067060 TGCTCCGTCAATGACCGATAG 59.933 52.381 7.91 1.70 0.00 2.08
2087 3616 1.067060 CTGCTCCGTCAATGACCGATA 59.933 52.381 7.91 0.00 0.00 2.92
2118 3647 2.094762 ATGCACTCGTTAACCTGGAC 57.905 50.000 0.00 0.00 0.00 4.02
2205 3734 0.609957 TCAAGGAAGGCACTGGCATG 60.610 55.000 5.25 0.00 40.86 4.06
2206 3735 0.323178 CTCAAGGAAGGCACTGGCAT 60.323 55.000 5.25 0.00 40.86 4.40
2222 3751 5.454187 GGAATTTATGGACGATACCACCTCA 60.454 44.000 0.00 0.00 43.03 3.86
2269 3798 1.448540 ATCTTCAGAGCCGTTGCCG 60.449 57.895 0.00 0.00 38.69 5.69
2341 3870 7.069085 AGCACATCCTCAAAAACATTATGCTAT 59.931 33.333 0.00 0.00 36.79 2.97
2360 3889 0.804364 TCCATCAAACGCAGCACATC 59.196 50.000 0.00 0.00 0.00 3.06
2446 3975 1.219522 CCACCAACGTCGACAGTTCC 61.220 60.000 17.16 0.00 0.00 3.62
2507 4036 5.338632 TCTGTTATAGAACCTCCCAACAGA 58.661 41.667 10.10 10.10 45.68 3.41
2556 4085 5.509716 TGACAGTCGTCTTTGACTCTTAA 57.490 39.130 0.00 0.00 45.97 1.85
2587 4116 4.449131 TGAGCTTCTTCATATGCCTCTTG 58.551 43.478 0.00 0.00 0.00 3.02
2654 4183 4.576053 TCACGTACGTTATACCAGCTACAT 59.424 41.667 20.23 0.00 0.00 2.29
2726 4255 6.834959 AACGCTCATGTCAGATTGTAATAG 57.165 37.500 0.00 0.00 0.00 1.73
2727 4256 7.010460 CAGAAACGCTCATGTCAGATTGTAATA 59.990 37.037 0.00 0.00 0.00 0.98
2728 4257 5.877012 AGAAACGCTCATGTCAGATTGTAAT 59.123 36.000 0.00 0.00 0.00 1.89
3548 6572 2.116238 GACTGGGGCTCCATACAGTTA 58.884 52.381 5.29 0.00 43.61 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.