Multiple sequence alignment - TraesCS3B01G106500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G106500 chr3B 100.000 2246 0 0 1 2246 71977030 71974785 0.000000e+00 4148.0
1 TraesCS3B01G106500 chr3B 87.719 456 35 11 824 1268 71802661 71803106 1.540000e-141 512.0
2 TraesCS3B01G106500 chr3B 87.240 384 37 12 835 1215 71968513 71968139 5.730000e-116 427.0
3 TraesCS3B01G106500 chr3B 91.935 310 17 5 962 1267 72112035 72111730 5.730000e-116 427.0
4 TraesCS3B01G106500 chr3B 83.636 385 45 14 890 1268 72092848 72092476 1.650000e-91 346.0
5 TraesCS3B01G106500 chr3B 90.187 214 13 3 1842 2052 71803443 71803651 2.840000e-69 272.0
6 TraesCS3B01G106500 chr3B 84.021 194 13 3 1267 1448 704258294 704258107 1.070000e-38 171.0
7 TraesCS3B01G106500 chr3B 76.061 330 31 16 1266 1548 77851304 77851632 6.510000e-26 128.0
8 TraesCS3B01G106500 chr3B 86.275 102 14 0 1441 1542 6088341 6088240 6.560000e-21 111.0
9 TraesCS3B01G106500 chr3B 100.000 33 0 0 1541 1573 72092489 72092457 6.700000e-06 62.1
10 TraesCS3B01G106500 chr4B 88.120 766 84 5 2 764 646806887 646806126 0.000000e+00 904.0
11 TraesCS3B01G106500 chr4B 87.054 757 90 7 2 755 536913150 536913901 0.000000e+00 848.0
12 TraesCS3B01G106500 chr3D 87.418 763 84 9 2 762 1976375 1975623 0.000000e+00 867.0
13 TraesCS3B01G106500 chr3D 87.054 757 91 5 2 755 527521558 527520806 0.000000e+00 848.0
14 TraesCS3B01G106500 chr3D 86.939 758 91 5 2 755 536215576 536214823 0.000000e+00 845.0
15 TraesCS3B01G106500 chr3D 91.422 443 21 13 828 1268 46199212 46198785 1.920000e-165 592.0
16 TraesCS3B01G106500 chr3D 79.636 275 31 13 1542 1800 46198797 46198532 8.250000e-40 174.0
17 TraesCS3B01G106500 chr3D 86.986 146 14 5 1267 1410 330293870 330293728 2.310000e-35 159.0
18 TraesCS3B01G106500 chr3D 78.261 253 33 9 1267 1502 48526600 48526353 2.330000e-30 143.0
19 TraesCS3B01G106500 chrUn 87.500 744 85 6 2 740 94298084 94297344 0.000000e+00 852.0
20 TraesCS3B01G106500 chrUn 86.922 757 91 7 2 753 94262303 94261550 0.000000e+00 843.0
21 TraesCS3B01G106500 chr5B 87.551 739 86 5 2 739 345503171 345503904 0.000000e+00 850.0
22 TraesCS3B01G106500 chr7B 86.939 758 91 6 2 755 482001927 482002680 0.000000e+00 845.0
23 TraesCS3B01G106500 chr3A 97.297 222 6 0 1024 1245 57814522 57814301 5.860000e-101 377.0
24 TraesCS3B01G106500 chr3A 80.196 409 43 22 1842 2246 57813948 57813574 2.840000e-69 272.0
25 TraesCS3B01G106500 chr3A 86.667 210 16 5 1265 1474 73621045 73621242 2.900000e-54 222.0
26 TraesCS3B01G106500 chr3A 81.159 276 31 16 1540 1800 57814303 57814034 3.780000e-48 202.0
27 TraesCS3B01G106500 chr3A 84.615 156 19 4 1348 1502 73630368 73630519 1.390000e-32 150.0
28 TraesCS3B01G106500 chr4D 91.139 158 13 1 1291 1448 14939126 14938970 1.750000e-51 213.0
29 TraesCS3B01G106500 chr4D 84.247 146 18 5 1267 1410 17753124 17753266 1.080000e-28 137.0
30 TraesCS3B01G106500 chr6D 80.545 257 24 6 1267 1498 354104068 354104323 8.250000e-40 174.0
31 TraesCS3B01G106500 chr1D 86.806 144 18 1 1267 1410 409016277 409016135 2.310000e-35 159.0
32 TraesCS3B01G106500 chr2D 86.429 140 14 5 1262 1399 515573669 515573533 5.000000e-32 148.0
33 TraesCS3B01G106500 chr2D 83.444 151 23 2 1261 1410 148282925 148282776 3.010000e-29 139.0
34 TraesCS3B01G106500 chr5D 77.470 253 38 9 1266 1512 310254594 310254355 1.400000e-27 134.0
35 TraesCS3B01G106500 chr1B 77.186 263 39 13 1297 1544 200944758 200945014 1.400000e-27 134.0
36 TraesCS3B01G106500 chr4A 76.115 314 39 14 1263 1544 467292515 467292824 5.030000e-27 132.0
37 TraesCS3B01G106500 chr2A 74.497 298 49 14 1266 1547 694584045 694583759 1.100000e-18 104.0
38 TraesCS3B01G106500 chr1A 83.962 106 15 2 1440 1544 68020675 68020571 1.420000e-17 100.0
39 TraesCS3B01G106500 chr6A 83.000 100 17 0 1440 1539 556094964 556094865 8.540000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G106500 chr3B 71974785 71977030 2245 True 4148.000000 4148 100.000000 1 2246 1 chr3B.!!$R3 2245
1 TraesCS3B01G106500 chr3B 71802661 71803651 990 False 392.000000 512 88.953000 824 2052 2 chr3B.!!$F2 1228
2 TraesCS3B01G106500 chr4B 646806126 646806887 761 True 904.000000 904 88.120000 2 764 1 chr4B.!!$R1 762
3 TraesCS3B01G106500 chr4B 536913150 536913901 751 False 848.000000 848 87.054000 2 755 1 chr4B.!!$F1 753
4 TraesCS3B01G106500 chr3D 1975623 1976375 752 True 867.000000 867 87.418000 2 762 1 chr3D.!!$R1 760
5 TraesCS3B01G106500 chr3D 527520806 527521558 752 True 848.000000 848 87.054000 2 755 1 chr3D.!!$R4 753
6 TraesCS3B01G106500 chr3D 536214823 536215576 753 True 845.000000 845 86.939000 2 755 1 chr3D.!!$R5 753
7 TraesCS3B01G106500 chr3D 46198532 46199212 680 True 383.000000 592 85.529000 828 1800 2 chr3D.!!$R6 972
8 TraesCS3B01G106500 chrUn 94297344 94298084 740 True 852.000000 852 87.500000 2 740 1 chrUn.!!$R2 738
9 TraesCS3B01G106500 chrUn 94261550 94262303 753 True 843.000000 843 86.922000 2 753 1 chrUn.!!$R1 751
10 TraesCS3B01G106500 chr5B 345503171 345503904 733 False 850.000000 850 87.551000 2 739 1 chr5B.!!$F1 737
11 TraesCS3B01G106500 chr7B 482001927 482002680 753 False 845.000000 845 86.939000 2 755 1 chr7B.!!$F1 753
12 TraesCS3B01G106500 chr3A 57813574 57814522 948 True 283.666667 377 86.217333 1024 2246 3 chr3A.!!$R1 1222

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 783 0.034896 GACGGTCATGTGGTGGAGTT 59.965 55.0 2.62 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1573 1596 0.107017 ATCCATGGAAGCAGAACGGG 60.107 55.0 20.67 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.998752 ACTACCTAGCTGATGGTATATATTCTT 57.001 33.333 13.14 0.00 38.05 2.52
68 70 6.321181 TCTTAGTTGCCAACTTTTGTGAAGAT 59.679 34.615 16.40 0.00 42.81 2.40
76 78 6.640907 GCCAACTTTTGTGAAGATAATTTCGT 59.359 34.615 0.00 0.00 0.00 3.85
77 79 7.358352 GCCAACTTTTGTGAAGATAATTTCGTG 60.358 37.037 0.00 0.00 0.00 4.35
110 112 4.082517 TGAGAAGAGACAGAGATTTGTCCG 60.083 45.833 2.76 0.00 46.81 4.79
124 126 3.953712 TTGTCCGAATGCAAGAGAGTA 57.046 42.857 0.00 0.00 0.00 2.59
188 190 3.494398 CGATGGGGTATCATTCGAAACCT 60.494 47.826 14.69 0.00 35.43 3.50
189 191 3.553828 TGGGGTATCATTCGAAACCTC 57.446 47.619 14.69 12.14 32.78 3.85
244 248 2.093310 GTGATGACTGCTTGTGTGATCG 59.907 50.000 0.00 0.00 32.15 3.69
288 292 4.352039 ACGAGCGTGATAACAGTATCTTG 58.648 43.478 0.00 0.00 37.58 3.02
311 315 5.837979 TGGACCAAGGATTTGATTTTCAAGA 59.162 36.000 0.00 0.00 37.70 3.02
316 320 8.092687 ACCAAGGATTTGATTTTCAAGATGAAG 58.907 33.333 0.00 0.00 37.70 3.02
359 364 0.875728 CCGGCCACGTTTGAACAATA 59.124 50.000 2.24 0.00 38.78 1.90
403 408 3.426560 GCATGATTCGCACACTCATTTGA 60.427 43.478 0.00 0.00 0.00 2.69
431 436 5.522456 TCAAAATGACTTGATTGAGCACAC 58.478 37.500 0.00 0.00 30.31 3.82
439 444 2.503331 TGATTGAGCACACGTGGAATT 58.497 42.857 21.57 1.89 0.00 2.17
656 668 4.614535 GCGGATATGATGATGCCAAAGAAC 60.615 45.833 0.00 0.00 0.00 3.01
698 710 1.531739 GCCACCGCATCCCAAGAAAA 61.532 55.000 0.00 0.00 34.03 2.29
706 718 2.012673 CATCCCAAGAAAAGCTCGGAG 58.987 52.381 0.00 0.00 30.82 4.63
724 737 2.301346 GAGACAACCCATTGCCCTATG 58.699 52.381 0.00 0.00 39.66 2.23
740 753 4.804261 GCCCTATGCAAACCGATAGAATCT 60.804 45.833 0.00 0.00 40.77 2.40
755 768 2.806244 AGAATCTGAACAAAACGGACGG 59.194 45.455 0.00 0.00 0.00 4.79
756 769 2.249844 ATCTGAACAAAACGGACGGT 57.750 45.000 0.00 0.00 0.00 4.83
760 773 1.600013 TGAACAAAACGGACGGTCATG 59.400 47.619 10.76 4.31 0.00 3.07
764 777 0.179040 AAAACGGACGGTCATGTGGT 60.179 50.000 10.76 0.00 0.00 4.16
765 778 0.882927 AAACGGACGGTCATGTGGTG 60.883 55.000 10.76 0.00 0.00 4.17
766 779 2.434185 CGGACGGTCATGTGGTGG 60.434 66.667 10.76 0.00 0.00 4.61
767 780 2.938086 CGGACGGTCATGTGGTGGA 61.938 63.158 10.76 0.00 0.00 4.02
768 781 1.079127 GGACGGTCATGTGGTGGAG 60.079 63.158 10.76 0.00 0.00 3.86
769 782 1.671742 GACGGTCATGTGGTGGAGT 59.328 57.895 2.62 0.00 0.00 3.85
770 783 0.034896 GACGGTCATGTGGTGGAGTT 59.965 55.000 2.62 0.00 0.00 3.01
771 784 0.250295 ACGGTCATGTGGTGGAGTTG 60.250 55.000 0.00 0.00 0.00 3.16
772 785 1.577328 CGGTCATGTGGTGGAGTTGC 61.577 60.000 0.00 0.00 0.00 4.17
773 786 1.244019 GGTCATGTGGTGGAGTTGCC 61.244 60.000 0.00 0.00 37.10 4.52
774 787 1.074775 TCATGTGGTGGAGTTGCCC 59.925 57.895 0.00 0.00 34.97 5.36
775 788 1.978617 CATGTGGTGGAGTTGCCCC 60.979 63.158 0.00 0.00 34.97 5.80
776 789 3.567579 ATGTGGTGGAGTTGCCCCG 62.568 63.158 0.00 0.00 34.97 5.73
777 790 3.948719 GTGGTGGAGTTGCCCCGA 61.949 66.667 0.00 0.00 34.97 5.14
778 791 3.948719 TGGTGGAGTTGCCCCGAC 61.949 66.667 0.00 0.00 34.97 4.79
800 813 4.020617 CCGCTTGGAGGGAGCACA 62.021 66.667 0.00 0.00 40.13 4.57
801 814 2.743928 CGCTTGGAGGGAGCACAC 60.744 66.667 0.00 0.00 40.13 3.82
802 815 2.360475 GCTTGGAGGGAGCACACC 60.360 66.667 0.00 0.00 39.89 4.16
803 816 2.046892 CTTGGAGGGAGCACACCG 60.047 66.667 0.00 0.00 0.00 4.94
804 817 4.329545 TTGGAGGGAGCACACCGC 62.330 66.667 0.00 0.00 42.91 5.68
826 839 4.030452 GTGGTGCGAGCTTGCCAC 62.030 66.667 23.34 19.50 43.52 5.01
907 921 2.359230 GCTGCCAAGCTCGGTTCT 60.359 61.111 0.00 0.00 46.60 3.01
908 922 2.394563 GCTGCCAAGCTCGGTTCTC 61.395 63.158 0.00 0.00 46.60 2.87
909 923 1.294780 CTGCCAAGCTCGGTTCTCT 59.705 57.895 0.00 0.00 0.00 3.10
910 924 0.321122 CTGCCAAGCTCGGTTCTCTT 60.321 55.000 0.00 0.00 0.00 2.85
960 978 2.482374 CTGCAAAGCGGCTACTGC 59.518 61.111 23.09 23.09 38.76 4.40
961 979 2.032528 TGCAAAGCGGCTACTGCT 59.967 55.556 27.23 2.30 46.68 4.24
962 980 0.740868 CTGCAAAGCGGCTACTGCTA 60.741 55.000 27.23 17.28 43.14 3.49
963 981 1.019278 TGCAAAGCGGCTACTGCTAC 61.019 55.000 27.23 8.88 43.14 3.58
964 982 1.019278 GCAAAGCGGCTACTGCTACA 61.019 55.000 22.76 0.00 43.14 2.74
965 983 1.656652 CAAAGCGGCTACTGCTACAT 58.343 50.000 1.35 0.00 43.14 2.29
984 1006 0.624254 TACGCAGGAGAAGAGGAGGA 59.376 55.000 0.00 0.00 0.00 3.71
985 1007 0.682855 ACGCAGGAGAAGAGGAGGAG 60.683 60.000 0.00 0.00 0.00 3.69
987 1009 0.325203 GCAGGAGAAGAGGAGGAGGT 60.325 60.000 0.00 0.00 0.00 3.85
1004 1026 1.216175 AGGTATGCCATCTGCCATGTT 59.784 47.619 1.54 0.00 40.16 2.71
1005 1027 2.034124 GGTATGCCATCTGCCATGTTT 58.966 47.619 0.00 0.00 40.16 2.83
1192 1214 1.890894 GAGTTCTACGCCCTGCTCA 59.109 57.895 0.00 0.00 0.00 4.26
1245 1267 2.987125 GCCGGAGCCAAGGACTAA 59.013 61.111 5.05 0.00 0.00 2.24
1246 1268 1.153349 GCCGGAGCCAAGGACTAAG 60.153 63.158 5.05 0.00 0.00 2.18
1248 1270 1.596934 CGGAGCCAAGGACTAAGCA 59.403 57.895 0.00 0.00 0.00 3.91
1250 1272 0.393132 GGAGCCAAGGACTAAGCACC 60.393 60.000 0.00 0.00 0.00 5.01
1251 1273 0.324943 GAGCCAAGGACTAAGCACCA 59.675 55.000 0.00 0.00 0.00 4.17
1252 1274 0.771127 AGCCAAGGACTAAGCACCAA 59.229 50.000 0.00 0.00 0.00 3.67
1254 1276 1.534729 CCAAGGACTAAGCACCAACC 58.465 55.000 0.00 0.00 0.00 3.77
1255 1277 1.202879 CCAAGGACTAAGCACCAACCA 60.203 52.381 0.00 0.00 0.00 3.67
1256 1278 2.555227 CCAAGGACTAAGCACCAACCAT 60.555 50.000 0.00 0.00 0.00 3.55
1257 1279 3.308117 CCAAGGACTAAGCACCAACCATA 60.308 47.826 0.00 0.00 0.00 2.74
1258 1280 3.914426 AGGACTAAGCACCAACCATAG 57.086 47.619 0.00 0.00 0.00 2.23
1259 1281 3.182152 AGGACTAAGCACCAACCATAGT 58.818 45.455 0.00 0.00 0.00 2.12
1260 1282 3.587506 AGGACTAAGCACCAACCATAGTT 59.412 43.478 0.00 0.00 36.33 2.24
1261 1283 4.042934 AGGACTAAGCACCAACCATAGTTT 59.957 41.667 0.00 0.00 32.45 2.66
1262 1284 4.395231 GGACTAAGCACCAACCATAGTTTC 59.605 45.833 0.00 0.00 32.45 2.78
1263 1285 4.980573 ACTAAGCACCAACCATAGTTTCA 58.019 39.130 0.00 0.00 32.45 2.69
1264 1286 4.760204 ACTAAGCACCAACCATAGTTTCAC 59.240 41.667 0.00 0.00 32.45 3.18
1265 1287 2.514803 AGCACCAACCATAGTTTCACC 58.485 47.619 0.00 0.00 32.45 4.02
1266 1288 2.108250 AGCACCAACCATAGTTTCACCT 59.892 45.455 0.00 0.00 32.45 4.00
1267 1289 3.329520 AGCACCAACCATAGTTTCACCTA 59.670 43.478 0.00 0.00 32.45 3.08
1268 1290 4.018415 AGCACCAACCATAGTTTCACCTAT 60.018 41.667 0.00 0.00 32.45 2.57
1269 1291 5.190925 AGCACCAACCATAGTTTCACCTATA 59.809 40.000 0.00 0.00 32.45 1.31
1270 1292 5.296035 GCACCAACCATAGTTTCACCTATAC 59.704 44.000 0.00 0.00 32.45 1.47
1271 1293 5.820947 CACCAACCATAGTTTCACCTATACC 59.179 44.000 0.00 0.00 32.45 2.73
1272 1294 5.729718 ACCAACCATAGTTTCACCTATACCT 59.270 40.000 0.00 0.00 32.45 3.08
1273 1295 6.055588 CCAACCATAGTTTCACCTATACCTG 58.944 44.000 0.00 0.00 32.45 4.00
1274 1296 5.888982 ACCATAGTTTCACCTATACCTGG 57.111 43.478 0.00 0.00 0.00 4.45
1275 1297 4.102681 ACCATAGTTTCACCTATACCTGGC 59.897 45.833 0.00 0.00 0.00 4.85
1276 1298 4.505039 CCATAGTTTCACCTATACCTGGCC 60.505 50.000 0.00 0.00 0.00 5.36
1277 1299 2.557869 AGTTTCACCTATACCTGGCCA 58.442 47.619 4.71 4.71 0.00 5.36
1278 1300 3.123273 AGTTTCACCTATACCTGGCCAT 58.877 45.455 5.51 0.00 0.00 4.40
1279 1301 3.136626 AGTTTCACCTATACCTGGCCATC 59.863 47.826 5.51 0.00 0.00 3.51
1280 1302 1.729586 TCACCTATACCTGGCCATCC 58.270 55.000 5.51 0.00 0.00 3.51
1281 1303 0.693049 CACCTATACCTGGCCATCCC 59.307 60.000 5.51 0.00 0.00 3.85
1282 1304 0.573279 ACCTATACCTGGCCATCCCT 59.427 55.000 5.51 0.00 0.00 4.20
1283 1305 1.280457 CCTATACCTGGCCATCCCTC 58.720 60.000 5.51 0.00 0.00 4.30
1284 1306 0.898320 CTATACCTGGCCATCCCTCG 59.102 60.000 5.51 0.00 0.00 4.63
1285 1307 0.544357 TATACCTGGCCATCCCTCGG 60.544 60.000 5.51 5.16 0.00 4.63
1286 1308 3.930394 TATACCTGGCCATCCCTCGGG 62.930 61.905 5.51 4.26 31.58 5.14
1315 1337 4.680237 CTGACCAAGCCCGACGCA 62.680 66.667 0.00 0.00 41.38 5.24
1316 1338 4.680237 TGACCAAGCCCGACGCAG 62.680 66.667 0.00 0.00 41.38 5.18
1317 1339 4.373116 GACCAAGCCCGACGCAGA 62.373 66.667 0.00 0.00 41.38 4.26
1318 1340 3.876589 GACCAAGCCCGACGCAGAA 62.877 63.158 0.00 0.00 41.38 3.02
1319 1341 2.668212 CCAAGCCCGACGCAGAAA 60.668 61.111 0.00 0.00 41.38 2.52
1320 1342 2.040544 CCAAGCCCGACGCAGAAAT 61.041 57.895 0.00 0.00 41.38 2.17
1321 1343 1.425428 CAAGCCCGACGCAGAAATC 59.575 57.895 0.00 0.00 41.38 2.17
1322 1344 1.745489 AAGCCCGACGCAGAAATCC 60.745 57.895 0.00 0.00 41.38 3.01
1323 1345 3.202706 GCCCGACGCAGAAATCCC 61.203 66.667 0.00 0.00 37.47 3.85
1324 1346 2.267642 CCCGACGCAGAAATCCCA 59.732 61.111 0.00 0.00 0.00 4.37
1325 1347 1.815421 CCCGACGCAGAAATCCCAG 60.815 63.158 0.00 0.00 0.00 4.45
1326 1348 1.815421 CCGACGCAGAAATCCCAGG 60.815 63.158 0.00 0.00 0.00 4.45
1327 1349 2.464459 CGACGCAGAAATCCCAGGC 61.464 63.158 0.00 0.00 0.00 4.85
1328 1350 2.044946 ACGCAGAAATCCCAGGCC 60.045 61.111 0.00 0.00 0.00 5.19
1329 1351 2.830370 CGCAGAAATCCCAGGCCC 60.830 66.667 0.00 0.00 0.00 5.80
1330 1352 2.360191 GCAGAAATCCCAGGCCCA 59.640 61.111 0.00 0.00 0.00 5.36
1331 1353 1.755783 GCAGAAATCCCAGGCCCAG 60.756 63.158 0.00 0.00 0.00 4.45
1332 1354 1.076485 CAGAAATCCCAGGCCCAGG 60.076 63.158 0.00 0.79 0.00 4.45
1333 1355 2.442830 GAAATCCCAGGCCCAGGC 60.443 66.667 0.00 0.00 41.06 4.85
1365 1387 4.534401 GCGTCGGGCCTAGAAAAT 57.466 55.556 0.84 0.00 34.80 1.82
1366 1388 2.308344 GCGTCGGGCCTAGAAAATC 58.692 57.895 0.84 0.00 34.80 2.17
1367 1389 0.461339 GCGTCGGGCCTAGAAAATCA 60.461 55.000 0.84 0.00 34.80 2.57
1368 1390 1.571919 CGTCGGGCCTAGAAAATCAG 58.428 55.000 0.84 0.00 0.00 2.90
1369 1391 1.806623 CGTCGGGCCTAGAAAATCAGG 60.807 57.143 0.84 0.00 34.85 3.86
1376 1398 2.027385 CCTAGAAAATCAGGCCCAAGC 58.973 52.381 0.00 0.00 38.76 4.01
1393 1415 4.376176 CCCGGCCCGTCAACGTAA 62.376 66.667 0.85 0.00 37.74 3.18
1394 1416 2.357275 CCGGCCCGTCAACGTAAA 60.357 61.111 0.85 0.00 37.74 2.01
1395 1417 1.960250 CCGGCCCGTCAACGTAAAA 60.960 57.895 0.85 0.00 37.74 1.52
1396 1418 1.494189 CGGCCCGTCAACGTAAAAG 59.506 57.895 0.00 0.00 37.74 2.27
1397 1419 1.208358 GGCCCGTCAACGTAAAAGC 59.792 57.895 0.00 0.00 37.74 3.51
1398 1420 1.208358 GCCCGTCAACGTAAAAGCC 59.792 57.895 1.48 0.00 37.74 4.35
1399 1421 1.494189 CCCGTCAACGTAAAAGCCG 59.506 57.895 1.48 0.00 37.74 5.52
1400 1422 1.494189 CCGTCAACGTAAAAGCCGG 59.506 57.895 0.00 0.00 37.74 6.13
1401 1423 1.154543 CGTCAACGTAAAAGCCGGC 60.155 57.895 21.89 21.89 34.11 6.13
1402 1424 1.208358 GTCAACGTAAAAGCCGGCC 59.792 57.895 26.15 6.12 0.00 6.13
1403 1425 2.174835 CAACGTAAAAGCCGGCCG 59.825 61.111 26.15 21.04 0.00 6.13
1404 1426 3.051479 AACGTAAAAGCCGGCCGG 61.051 61.111 40.26 40.26 38.57 6.13
1416 1438 3.777910 GGCCGGGCCTCTTCGTTA 61.778 66.667 30.86 0.00 46.69 3.18
1417 1439 2.266689 GCCGGGCCTCTTCGTTAA 59.733 61.111 8.12 0.00 0.00 2.01
1418 1440 2.104859 GCCGGGCCTCTTCGTTAAC 61.105 63.158 8.12 0.00 0.00 2.01
1419 1441 1.595357 CCGGGCCTCTTCGTTAACT 59.405 57.895 0.84 0.00 0.00 2.24
1420 1442 0.459759 CCGGGCCTCTTCGTTAACTC 60.460 60.000 0.84 0.00 0.00 3.01
1421 1443 0.801067 CGGGCCTCTTCGTTAACTCG 60.801 60.000 0.84 0.00 0.00 4.18
1422 1444 1.082679 GGGCCTCTTCGTTAACTCGC 61.083 60.000 0.84 0.00 0.00 5.03
1423 1445 0.389426 GGCCTCTTCGTTAACTCGCA 60.389 55.000 3.71 0.00 0.00 5.10
1424 1446 1.425412 GCCTCTTCGTTAACTCGCAA 58.575 50.000 3.71 0.00 0.00 4.85
1425 1447 1.796459 GCCTCTTCGTTAACTCGCAAA 59.204 47.619 3.71 0.00 0.00 3.68
1426 1448 2.415512 GCCTCTTCGTTAACTCGCAAAT 59.584 45.455 3.71 0.00 0.00 2.32
1427 1449 3.615496 GCCTCTTCGTTAACTCGCAAATA 59.385 43.478 3.71 0.00 0.00 1.40
1428 1450 4.270325 GCCTCTTCGTTAACTCGCAAATAT 59.730 41.667 3.71 0.00 0.00 1.28
1429 1451 5.728255 CCTCTTCGTTAACTCGCAAATATG 58.272 41.667 3.71 0.00 0.00 1.78
1430 1452 5.518847 CCTCTTCGTTAACTCGCAAATATGA 59.481 40.000 3.71 0.00 0.00 2.15
1431 1453 6.201044 CCTCTTCGTTAACTCGCAAATATGAT 59.799 38.462 3.71 0.00 0.00 2.45
1432 1454 6.933130 TCTTCGTTAACTCGCAAATATGATG 58.067 36.000 3.71 0.00 0.00 3.07
1433 1455 5.651172 TCGTTAACTCGCAAATATGATGG 57.349 39.130 3.71 0.00 0.00 3.51
1434 1456 4.025229 TCGTTAACTCGCAAATATGATGGC 60.025 41.667 3.71 0.00 0.00 4.40
1435 1457 4.537015 GTTAACTCGCAAATATGATGGCC 58.463 43.478 0.00 0.00 0.00 5.36
1436 1458 1.609208 ACTCGCAAATATGATGGCCC 58.391 50.000 0.00 0.00 0.00 5.80
1437 1459 1.143684 ACTCGCAAATATGATGGCCCT 59.856 47.619 0.00 0.00 0.00 5.19
1438 1460 1.538512 CTCGCAAATATGATGGCCCTG 59.461 52.381 0.00 0.00 0.00 4.45
1439 1461 0.599558 CGCAAATATGATGGCCCTGG 59.400 55.000 0.00 0.00 0.00 4.45
1440 1462 0.971386 GCAAATATGATGGCCCTGGG 59.029 55.000 8.86 8.86 0.00 4.45
1467 1489 3.416156 CCTTTGGGCTCAATATCTAGGC 58.584 50.000 0.00 3.05 37.55 3.93
1468 1490 3.073650 CCTTTGGGCTCAATATCTAGGCT 59.926 47.826 0.00 0.00 38.30 4.58
1469 1491 4.322567 CTTTGGGCTCAATATCTAGGCTC 58.677 47.826 0.00 0.00 38.30 4.70
1470 1492 2.976440 TGGGCTCAATATCTAGGCTCA 58.024 47.619 0.00 0.00 38.30 4.26
1471 1493 2.902486 TGGGCTCAATATCTAGGCTCAG 59.098 50.000 0.00 0.00 38.30 3.35
1472 1494 2.235898 GGGCTCAATATCTAGGCTCAGG 59.764 54.545 0.00 0.00 38.30 3.86
1473 1495 2.354604 GGCTCAATATCTAGGCTCAGGC 60.355 54.545 0.00 0.00 35.52 4.85
1474 1496 2.566724 GCTCAATATCTAGGCTCAGGCT 59.433 50.000 5.81 5.81 42.39 4.58
1475 1497 3.007831 GCTCAATATCTAGGCTCAGGCTT 59.992 47.826 5.83 0.00 39.70 4.35
1476 1498 4.567971 CTCAATATCTAGGCTCAGGCTTG 58.432 47.826 5.83 4.27 39.70 4.01
1477 1499 3.326006 TCAATATCTAGGCTCAGGCTTGG 59.674 47.826 5.83 0.00 39.70 3.61
1478 1500 1.051812 TATCTAGGCTCAGGCTTGGC 58.948 55.000 5.83 0.00 39.70 4.52
1493 1515 2.896168 CTTGGCCCATAAGCAACATTG 58.104 47.619 0.00 0.00 0.00 2.82
1494 1516 1.193323 TGGCCCATAAGCAACATTGG 58.807 50.000 0.00 0.00 0.00 3.16
1497 1519 0.465287 CCCATAAGCAACATTGGGCC 59.535 55.000 0.00 0.00 42.23 5.80
1498 1520 1.193323 CCATAAGCAACATTGGGCCA 58.807 50.000 0.00 0.00 0.00 5.36
1499 1521 1.137479 CCATAAGCAACATTGGGCCAG 59.863 52.381 6.23 0.00 0.00 4.85
1500 1522 1.137479 CATAAGCAACATTGGGCCAGG 59.863 52.381 6.23 5.97 0.00 4.45
1501 1523 1.257055 TAAGCAACATTGGGCCAGGC 61.257 55.000 6.23 1.26 0.00 4.85
1573 1596 6.716173 CACCTACCTACTAGGAGAGGTATTTC 59.284 46.154 22.81 0.00 46.34 2.17
1575 1598 5.077369 ACCTACTAGGAGAGGTATTTCCC 57.923 47.826 2.52 0.00 44.51 3.97
1578 1601 3.991683 ACTAGGAGAGGTATTTCCCGTT 58.008 45.455 0.00 0.00 36.75 4.44
1589 1613 1.533625 TTTCCCGTTCTGCTTCCATG 58.466 50.000 0.00 0.00 0.00 3.66
1601 1625 4.063689 CTGCTTCCATGGATCATCAGTAC 58.936 47.826 17.06 0.00 0.00 2.73
1603 1627 2.820059 TCCATGGATCATCAGTACGC 57.180 50.000 11.44 0.00 0.00 4.42
1606 1630 1.797046 CATGGATCATCAGTACGCAGC 59.203 52.381 0.00 0.00 0.00 5.25
1610 1634 1.590238 GATCATCAGTACGCAGCACAC 59.410 52.381 0.00 0.00 0.00 3.82
1625 1649 1.803334 CACACTAGCGGCTTGGTTTA 58.197 50.000 8.26 0.00 0.00 2.01
1693 1733 3.452264 TGGAATATGTACTGCAGCTCTGT 59.548 43.478 15.27 0.00 0.00 3.41
1735 1775 4.051922 CCCGATCGAAGAGAATAAACTGG 58.948 47.826 18.66 0.00 43.63 4.00
1738 1778 4.504461 CGATCGAAGAGAATAAACTGGTGG 59.496 45.833 10.26 0.00 43.63 4.61
1743 1783 4.021102 AGAGAATAAACTGGTGGGTGTG 57.979 45.455 0.00 0.00 0.00 3.82
1747 1787 6.012858 AGAGAATAAACTGGTGGGTGTGATTA 60.013 38.462 0.00 0.00 0.00 1.75
1758 1798 5.128827 GGTGGGTGTGATTAATCAGTAGAGA 59.871 44.000 18.47 0.00 37.51 3.10
1759 1799 6.276847 GTGGGTGTGATTAATCAGTAGAGAG 58.723 44.000 18.47 0.00 37.51 3.20
1760 1800 6.096987 GTGGGTGTGATTAATCAGTAGAGAGA 59.903 42.308 18.47 0.00 37.51 3.10
1761 1801 6.841229 TGGGTGTGATTAATCAGTAGAGAGAT 59.159 38.462 18.47 0.00 37.51 2.75
1762 1802 7.014711 TGGGTGTGATTAATCAGTAGAGAGATC 59.985 40.741 18.47 3.71 37.51 2.75
1763 1803 7.232534 GGGTGTGATTAATCAGTAGAGAGATCT 59.767 40.741 18.47 0.00 37.51 2.75
1780 1820 8.641541 AGAGAGATCTCAGAATTATTGTTCTCC 58.358 37.037 24.39 0.00 45.21 3.71
1781 1821 8.316497 AGAGATCTCAGAATTATTGTTCTCCA 57.684 34.615 24.39 0.00 36.33 3.86
1782 1822 8.203485 AGAGATCTCAGAATTATTGTTCTCCAC 58.797 37.037 24.39 0.00 36.33 4.02
1789 1829 5.639506 AGAATTATTGTTCTCCACTGACACG 59.360 40.000 0.00 0.00 33.24 4.49
1805 1845 2.880822 CACGATTAGTGTTGTGCTGG 57.119 50.000 0.00 0.00 45.51 4.85
1808 1848 1.464608 CGATTAGTGTTGTGCTGGGTG 59.535 52.381 0.00 0.00 0.00 4.61
1810 1850 2.428544 TTAGTGTTGTGCTGGGTGTT 57.571 45.000 0.00 0.00 0.00 3.32
1814 1854 0.814457 TGTTGTGCTGGGTGTTTGTC 59.186 50.000 0.00 0.00 0.00 3.18
1816 1856 1.102154 TTGTGCTGGGTGTTTGTCTG 58.898 50.000 0.00 0.00 0.00 3.51
1817 1857 0.751277 TGTGCTGGGTGTTTGTCTGG 60.751 55.000 0.00 0.00 0.00 3.86
1824 1864 0.249447 GGTGTTTGTCTGGCTTTGGC 60.249 55.000 0.00 0.00 37.82 4.52
1827 1867 0.598419 GTTTGTCTGGCTTTGGCTGC 60.598 55.000 0.00 0.00 38.73 5.25
1828 1868 2.074230 TTTGTCTGGCTTTGGCTGCG 62.074 55.000 0.00 0.00 38.73 5.18
1839 1879 4.849310 GGCTGCGGCGGTTGGATA 62.849 66.667 12.29 0.00 39.81 2.59
1840 1880 2.822255 GCTGCGGCGGTTGGATAA 60.822 61.111 9.78 0.00 0.00 1.75
1875 1962 1.064906 AGGACAGGCATGGAGAATGTG 60.065 52.381 2.31 0.00 38.65 3.21
1890 1977 1.633774 ATGTGAGTCAGGGTCTTCGT 58.366 50.000 0.00 0.00 0.00 3.85
1901 1988 2.165845 AGGGTCTTCGTATGTTTCCTCG 59.834 50.000 0.00 0.00 0.00 4.63
1902 1989 1.925185 GGTCTTCGTATGTTTCCTCGC 59.075 52.381 0.00 0.00 0.00 5.03
1909 1996 4.546570 TCGTATGTTTCCTCGCTGATATG 58.453 43.478 0.00 0.00 0.00 1.78
1942 2034 2.210116 TCCGTTTCTTCTCAGCACAAC 58.790 47.619 0.00 0.00 0.00 3.32
1943 2035 1.070577 CCGTTTCTTCTCAGCACAACG 60.071 52.381 0.00 0.00 37.37 4.10
1944 2036 1.657538 CGTTTCTTCTCAGCACAACGC 60.658 52.381 0.00 0.00 42.91 4.84
1945 2037 1.330521 GTTTCTTCTCAGCACAACGCA 59.669 47.619 0.00 0.00 46.13 5.24
1946 2038 1.662517 TTCTTCTCAGCACAACGCAA 58.337 45.000 0.00 0.00 46.13 4.85
1999 2091 9.826574 TGAAACTAACTAAACTATTGTGTCACT 57.173 29.630 4.27 0.00 0.00 3.41
2011 2103 0.319555 GTGTCACTCAGCTTACCGCA 60.320 55.000 0.00 0.00 42.61 5.69
2020 2115 1.959042 AGCTTACCGCAAGATGATGG 58.041 50.000 0.00 0.00 42.61 3.51
2053 2159 0.691904 TGATCATGCCCAGTGTGACA 59.308 50.000 0.00 0.00 0.00 3.58
2061 2167 1.645034 CCCAGTGTGACATGTCGATC 58.355 55.000 20.54 13.55 0.00 3.69
2064 2170 1.657594 CAGTGTGACATGTCGATCAGC 59.342 52.381 20.54 12.91 0.00 4.26
2067 2173 2.738846 GTGTGACATGTCGATCAGCTTT 59.261 45.455 20.54 0.00 0.00 3.51
2069 2175 3.433274 TGTGACATGTCGATCAGCTTTTC 59.567 43.478 20.54 0.00 0.00 2.29
2071 2177 3.265791 GACATGTCGATCAGCTTTTCCT 58.734 45.455 10.69 0.00 0.00 3.36
2072 2178 4.081697 TGACATGTCGATCAGCTTTTCCTA 60.082 41.667 20.54 0.00 0.00 2.94
2073 2179 5.028549 ACATGTCGATCAGCTTTTCCTAT 57.971 39.130 0.00 0.00 0.00 2.57
2074 2180 6.161855 ACATGTCGATCAGCTTTTCCTATA 57.838 37.500 0.00 0.00 0.00 1.31
2077 2183 7.815068 ACATGTCGATCAGCTTTTCCTATATAC 59.185 37.037 0.00 0.00 0.00 1.47
2078 2184 7.526142 TGTCGATCAGCTTTTCCTATATACT 57.474 36.000 0.00 0.00 0.00 2.12
2079 2185 8.631480 TGTCGATCAGCTTTTCCTATATACTA 57.369 34.615 0.00 0.00 0.00 1.82
2080 2186 8.512956 TGTCGATCAGCTTTTCCTATATACTAC 58.487 37.037 0.00 0.00 0.00 2.73
2081 2187 8.732531 GTCGATCAGCTTTTCCTATATACTACT 58.267 37.037 0.00 0.00 0.00 2.57
2082 2188 9.955102 TCGATCAGCTTTTCCTATATACTACTA 57.045 33.333 0.00 0.00 0.00 1.82
2110 2216 6.780522 ACTTTGTGGTATAGTGGAATTGGTTT 59.219 34.615 0.00 0.00 0.00 3.27
2111 2217 6.827586 TTGTGGTATAGTGGAATTGGTTTC 57.172 37.500 0.00 0.00 0.00 2.78
2136 2242 7.426929 CTGTAATCATCTACAGGTTTATGGC 57.573 40.000 3.34 0.00 43.39 4.40
2137 2243 6.894682 TGTAATCATCTACAGGTTTATGGCA 58.105 36.000 0.00 0.00 0.00 4.92
2158 2264 4.093514 CAGCGTGCACATTTTATGAAGAG 58.906 43.478 18.64 0.00 0.00 2.85
2165 2271 7.326789 CGTGCACATTTTATGAAGAGAAACAAT 59.673 33.333 18.64 0.00 0.00 2.71
2170 2276 9.023962 ACATTTTATGAAGAGAAACAATAGCCA 57.976 29.630 0.00 0.00 0.00 4.75
2182 2288 8.687824 AGAAACAATAGCCATTAATTTGTTCG 57.312 30.769 13.06 0.00 39.01 3.95
2206 2312 0.172803 ACACGACAACTCCCTATCGC 59.827 55.000 0.00 0.00 38.12 4.58
2214 2320 1.065928 CTCCCTATCGCGTGGTGTC 59.934 63.158 5.77 0.00 0.00 3.67
2216 2322 1.518572 CCCTATCGCGTGGTGTCAC 60.519 63.158 5.77 0.00 40.36 3.67
2217 2323 1.518572 CCTATCGCGTGGTGTCACC 60.519 63.158 15.64 15.64 40.65 4.02
2236 2344 2.039480 ACCATGCATAGAATCGATGGCT 59.961 45.455 0.00 2.18 37.66 4.75
2242 2350 3.396560 CATAGAATCGATGGCTGAGCAA 58.603 45.455 6.82 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.636150 GTAGTATACCTTGTTCTAGTGGTGA 57.364 40.000 0.00 0.00 34.89 4.02
46 47 7.575414 TTATCTTCACAAAAGTTGGCAACTA 57.425 32.000 31.34 13.43 41.91 2.24
50 51 6.640499 CGAAATTATCTTCACAAAAGTTGGCA 59.360 34.615 0.00 0.00 34.12 4.92
68 70 0.406361 ACCTTGGGGGCACGAAATTA 59.594 50.000 0.00 0.00 39.10 1.40
76 78 1.463214 TCTTCTCACCTTGGGGGCA 60.463 57.895 0.00 0.00 39.10 5.36
77 79 1.201429 TCTCTTCTCACCTTGGGGGC 61.201 60.000 0.00 0.00 39.10 5.80
110 112 6.868622 TCCTTTCTAGTACTCTCTTGCATTC 58.131 40.000 0.00 0.00 0.00 2.67
124 126 2.093973 CACGCTCCACATCCTTTCTAGT 60.094 50.000 0.00 0.00 0.00 2.57
188 190 0.612744 TTCATCCCATGTCAGTGCGA 59.387 50.000 0.00 0.00 0.00 5.10
189 191 1.012086 CTTCATCCCATGTCAGTGCG 58.988 55.000 0.00 0.00 0.00 5.34
244 248 2.031314 CCTCGATGATCATGTTGTGCAC 59.969 50.000 14.30 10.75 0.00 4.57
288 292 6.345096 TCTTGAAAATCAAATCCTTGGTCC 57.655 37.500 0.00 0.00 35.73 4.46
311 315 1.684248 GCAGGGGCTCAACATCTTCAT 60.684 52.381 0.00 0.00 36.96 2.57
316 320 2.048603 GGTGCAGGGGCTCAACATC 61.049 63.158 0.00 0.00 41.91 3.06
359 364 4.516698 GCAGTTCACGATGGAATTGGATAT 59.483 41.667 11.28 0.00 35.69 1.63
389 394 4.408993 TGAAGATTCAAATGAGTGTGCG 57.591 40.909 0.00 0.00 33.55 5.34
403 408 7.597743 GTGCTCAATCAAGTCATTTTGAAGATT 59.402 33.333 0.00 0.00 40.21 2.40
421 426 3.407698 TGTAATTCCACGTGTGCTCAAT 58.592 40.909 15.65 1.80 0.00 2.57
431 436 2.230025 TGGTTGCCAATGTAATTCCACG 59.770 45.455 0.00 0.00 31.22 4.94
561 570 9.347934 CAAGTTTGCACGTCCAAATATTAATTA 57.652 29.630 8.09 0.00 37.09 1.40
612 623 4.377328 CGCCACGGTCAATATGTTGATATG 60.377 45.833 8.23 7.13 45.46 1.78
617 628 0.376852 CCGCCACGGTCAATATGTTG 59.623 55.000 0.00 0.00 42.73 3.33
618 629 2.775351 CCGCCACGGTCAATATGTT 58.225 52.632 0.00 0.00 42.73 2.71
646 658 1.599518 ATGGACGCGTTCTTTGGCA 60.600 52.632 20.15 0.00 0.00 4.92
698 710 0.036010 CAATGGGTTGTCTCCGAGCT 60.036 55.000 0.00 0.00 0.00 4.09
706 718 0.746659 GCATAGGGCAATGGGTTGTC 59.253 55.000 1.86 0.00 43.97 3.18
724 737 5.545658 TTGTTCAGATTCTATCGGTTTGC 57.454 39.130 0.00 0.00 0.00 3.68
730 743 5.498700 CGTCCGTTTTGTTCAGATTCTATCG 60.499 44.000 0.00 0.00 0.00 2.92
740 753 1.600013 CATGACCGTCCGTTTTGTTCA 59.400 47.619 0.00 0.00 0.00 3.18
755 768 1.244019 GGGCAACTCCACCACATGAC 61.244 60.000 0.00 0.00 36.21 3.06
756 769 1.074775 GGGCAACTCCACCACATGA 59.925 57.895 0.00 0.00 36.21 3.07
760 773 3.948719 TCGGGGCAACTCCACCAC 61.949 66.667 0.00 0.00 33.48 4.16
783 796 4.020617 TGTGCTCCCTCCAAGCGG 62.021 66.667 0.00 0.00 42.83 5.52
784 797 2.743928 GTGTGCTCCCTCCAAGCG 60.744 66.667 0.00 0.00 42.83 4.68
785 798 2.360475 GGTGTGCTCCCTCCAAGC 60.360 66.667 0.00 0.00 40.26 4.01
786 799 2.046892 CGGTGTGCTCCCTCCAAG 60.047 66.667 0.00 0.00 0.00 3.61
787 800 4.329545 GCGGTGTGCTCCCTCCAA 62.330 66.667 0.00 0.00 41.73 3.53
809 822 4.030452 GTGGCAAGCTCGCACCAC 62.030 66.667 0.00 5.32 45.22 4.16
897 911 1.200484 GACGAAGAAGAGAACCGAGCT 59.800 52.381 0.00 0.00 0.00 4.09
907 921 6.223852 AGTAAGATGCTTTTGACGAAGAAGA 58.776 36.000 0.00 0.00 0.00 2.87
908 922 6.367422 AGAGTAAGATGCTTTTGACGAAGAAG 59.633 38.462 0.00 0.00 0.00 2.85
909 923 6.146184 CAGAGTAAGATGCTTTTGACGAAGAA 59.854 38.462 0.00 0.00 0.00 2.52
910 924 5.635280 CAGAGTAAGATGCTTTTGACGAAGA 59.365 40.000 0.00 0.00 0.00 2.87
958 976 2.359214 CTCTTCTCCTGCGTATGTAGCA 59.641 50.000 0.00 0.00 42.99 3.49
959 977 2.287909 CCTCTTCTCCTGCGTATGTAGC 60.288 54.545 0.00 0.00 0.00 3.58
960 978 3.215151 TCCTCTTCTCCTGCGTATGTAG 58.785 50.000 0.00 0.00 0.00 2.74
961 979 3.215151 CTCCTCTTCTCCTGCGTATGTA 58.785 50.000 0.00 0.00 0.00 2.29
962 980 2.028130 CTCCTCTTCTCCTGCGTATGT 58.972 52.381 0.00 0.00 0.00 2.29
963 981 1.339610 CCTCCTCTTCTCCTGCGTATG 59.660 57.143 0.00 0.00 0.00 2.39
964 982 1.215673 TCCTCCTCTTCTCCTGCGTAT 59.784 52.381 0.00 0.00 0.00 3.06
965 983 0.624254 TCCTCCTCTTCTCCTGCGTA 59.376 55.000 0.00 0.00 0.00 4.42
1004 1026 2.139888 TACCTTGTGCGCCGTCGTAA 62.140 55.000 4.18 0.00 38.14 3.18
1005 1027 2.531927 CTACCTTGTGCGCCGTCGTA 62.532 60.000 4.18 0.00 38.14 3.43
1125 1147 2.066340 CAGCTTCCACAGGTACCCA 58.934 57.895 8.74 0.00 0.00 4.51
1192 1214 2.990479 GGTGATCCTGCCCTCGTT 59.010 61.111 0.00 0.00 0.00 3.85
1242 1264 4.156008 GGTGAAACTATGGTTGGTGCTTAG 59.844 45.833 0.00 0.00 36.74 2.18
1245 1267 2.108250 AGGTGAAACTATGGTTGGTGCT 59.892 45.455 0.00 0.00 36.74 4.40
1246 1268 2.514803 AGGTGAAACTATGGTTGGTGC 58.485 47.619 0.00 0.00 36.74 5.01
1248 1270 5.729718 AGGTATAGGTGAAACTATGGTTGGT 59.270 40.000 0.00 0.00 35.41 3.67
1250 1272 6.055588 CCAGGTATAGGTGAAACTATGGTTG 58.944 44.000 0.00 0.00 35.41 3.77
1251 1273 5.397559 GCCAGGTATAGGTGAAACTATGGTT 60.398 44.000 0.00 0.00 35.41 3.67
1252 1274 4.102681 GCCAGGTATAGGTGAAACTATGGT 59.897 45.833 0.00 0.00 35.41 3.55
1254 1276 4.102524 TGGCCAGGTATAGGTGAAACTATG 59.897 45.833 0.00 0.00 35.41 2.23
1255 1277 4.303794 TGGCCAGGTATAGGTGAAACTAT 58.696 43.478 0.00 0.00 37.44 2.12
1256 1278 3.726790 TGGCCAGGTATAGGTGAAACTA 58.273 45.455 0.00 0.00 36.74 2.24
1257 1279 2.557869 TGGCCAGGTATAGGTGAAACT 58.442 47.619 0.00 0.00 36.74 2.66
1258 1280 3.477530 GATGGCCAGGTATAGGTGAAAC 58.522 50.000 13.05 0.00 0.00 2.78
1259 1281 2.441750 GGATGGCCAGGTATAGGTGAAA 59.558 50.000 13.05 0.00 0.00 2.69
1260 1282 2.054799 GGATGGCCAGGTATAGGTGAA 58.945 52.381 13.05 0.00 0.00 3.18
1261 1283 1.729586 GGATGGCCAGGTATAGGTGA 58.270 55.000 13.05 0.00 0.00 4.02
1262 1284 0.693049 GGGATGGCCAGGTATAGGTG 59.307 60.000 13.05 0.00 35.15 4.00
1263 1285 0.573279 AGGGATGGCCAGGTATAGGT 59.427 55.000 13.05 0.00 35.15 3.08
1264 1286 1.280457 GAGGGATGGCCAGGTATAGG 58.720 60.000 13.05 0.00 35.15 2.57
1265 1287 0.898320 CGAGGGATGGCCAGGTATAG 59.102 60.000 13.05 0.00 35.15 1.31
1266 1288 0.544357 CCGAGGGATGGCCAGGTATA 60.544 60.000 13.05 0.00 35.15 1.47
1267 1289 1.843376 CCGAGGGATGGCCAGGTAT 60.843 63.158 13.05 0.00 35.15 2.73
1268 1290 2.445845 CCGAGGGATGGCCAGGTA 60.446 66.667 13.05 0.00 35.15 3.08
1298 1320 4.680237 TGCGTCGGGCTTGGTCAG 62.680 66.667 0.00 0.00 44.05 3.51
1299 1321 4.680237 CTGCGTCGGGCTTGGTCA 62.680 66.667 0.00 0.00 44.05 4.02
1300 1322 3.876589 TTCTGCGTCGGGCTTGGTC 62.877 63.158 0.00 0.00 44.05 4.02
1301 1323 2.748058 ATTTCTGCGTCGGGCTTGGT 62.748 55.000 0.00 0.00 44.05 3.67
1302 1324 1.982073 GATTTCTGCGTCGGGCTTGG 61.982 60.000 0.00 0.00 44.05 3.61
1303 1325 1.425428 GATTTCTGCGTCGGGCTTG 59.575 57.895 0.00 0.00 44.05 4.01
1304 1326 1.745489 GGATTTCTGCGTCGGGCTT 60.745 57.895 0.00 0.00 44.05 4.35
1305 1327 2.125106 GGATTTCTGCGTCGGGCT 60.125 61.111 0.00 0.00 44.05 5.19
1306 1328 3.202706 GGGATTTCTGCGTCGGGC 61.203 66.667 0.00 0.00 43.96 6.13
1307 1329 1.815421 CTGGGATTTCTGCGTCGGG 60.815 63.158 0.00 0.00 0.00 5.14
1308 1330 1.815421 CCTGGGATTTCTGCGTCGG 60.815 63.158 0.00 0.00 0.00 4.79
1309 1331 2.464459 GCCTGGGATTTCTGCGTCG 61.464 63.158 0.00 0.00 0.00 5.12
1310 1332 2.115291 GGCCTGGGATTTCTGCGTC 61.115 63.158 0.00 0.00 0.00 5.19
1311 1333 2.044946 GGCCTGGGATTTCTGCGT 60.045 61.111 0.00 0.00 0.00 5.24
1312 1334 2.830370 GGGCCTGGGATTTCTGCG 60.830 66.667 0.84 0.00 0.00 5.18
1313 1335 1.755783 CTGGGCCTGGGATTTCTGC 60.756 63.158 4.53 0.00 0.00 4.26
1314 1336 1.076485 CCTGGGCCTGGGATTTCTG 60.076 63.158 21.11 0.00 0.00 3.02
1315 1337 3.001358 GCCTGGGCCTGGGATTTCT 62.001 63.158 28.34 0.00 34.56 2.52
1316 1338 2.442830 GCCTGGGCCTGGGATTTC 60.443 66.667 28.34 9.65 34.56 2.17
1348 1370 0.461339 TGATTTTCTAGGCCCGACGC 60.461 55.000 0.00 0.00 0.00 5.19
1349 1371 1.571919 CTGATTTTCTAGGCCCGACG 58.428 55.000 0.00 0.00 0.00 5.12
1350 1372 1.954927 CCTGATTTTCTAGGCCCGAC 58.045 55.000 0.00 0.00 0.00 4.79
1356 1378 2.027385 GCTTGGGCCTGATTTTCTAGG 58.973 52.381 4.53 0.00 37.14 3.02
1376 1398 3.880162 TTTACGTTGACGGGCCGGG 62.880 63.158 31.78 15.52 44.95 5.73
1377 1399 1.903783 CTTTTACGTTGACGGGCCGG 61.904 60.000 31.78 14.51 44.95 6.13
1378 1400 1.494189 CTTTTACGTTGACGGGCCG 59.506 57.895 27.06 27.06 44.95 6.13
1379 1401 1.208358 GCTTTTACGTTGACGGGCC 59.792 57.895 8.52 0.00 44.95 5.80
1380 1402 1.208358 GGCTTTTACGTTGACGGGC 59.792 57.895 8.52 4.33 44.95 6.13
1381 1403 1.494189 CGGCTTTTACGTTGACGGG 59.506 57.895 8.52 0.00 44.95 5.28
1382 1404 1.494189 CCGGCTTTTACGTTGACGG 59.506 57.895 8.52 9.68 44.95 4.79
1383 1405 1.154543 GCCGGCTTTTACGTTGACG 60.155 57.895 22.15 1.41 46.33 4.35
1384 1406 1.208358 GGCCGGCTTTTACGTTGAC 59.792 57.895 28.56 0.00 0.00 3.18
1385 1407 2.319096 CGGCCGGCTTTTACGTTGA 61.319 57.895 28.56 0.00 0.00 3.18
1386 1408 2.174835 CGGCCGGCTTTTACGTTG 59.825 61.111 28.56 1.16 0.00 4.10
1387 1409 3.051479 CCGGCCGGCTTTTACGTT 61.051 61.111 34.96 0.00 0.00 3.99
1400 1422 2.104859 GTTAACGAAGAGGCCCGGC 61.105 63.158 0.00 0.00 0.00 6.13
1401 1423 0.459759 GAGTTAACGAAGAGGCCCGG 60.460 60.000 0.00 0.00 0.00 5.73
1402 1424 0.801067 CGAGTTAACGAAGAGGCCCG 60.801 60.000 0.00 0.00 35.09 6.13
1403 1425 1.082679 GCGAGTTAACGAAGAGGCCC 61.083 60.000 0.00 0.00 35.09 5.80
1404 1426 0.389426 TGCGAGTTAACGAAGAGGCC 60.389 55.000 0.00 0.00 35.09 5.19
1405 1427 1.425412 TTGCGAGTTAACGAAGAGGC 58.575 50.000 0.00 0.00 35.09 4.70
1406 1428 5.518847 TCATATTTGCGAGTTAACGAAGAGG 59.481 40.000 0.00 0.00 35.09 3.69
1407 1429 6.569228 TCATATTTGCGAGTTAACGAAGAG 57.431 37.500 0.00 0.00 35.09 2.85
1408 1430 6.019075 CCATCATATTTGCGAGTTAACGAAGA 60.019 38.462 0.00 0.00 35.09 2.87
1409 1431 6.129393 CCATCATATTTGCGAGTTAACGAAG 58.871 40.000 0.00 0.00 35.09 3.79
1410 1432 5.503357 GCCATCATATTTGCGAGTTAACGAA 60.503 40.000 0.00 0.00 35.09 3.85
1411 1433 4.025229 GCCATCATATTTGCGAGTTAACGA 60.025 41.667 0.00 0.00 35.09 3.85
1412 1434 4.211389 GCCATCATATTTGCGAGTTAACG 58.789 43.478 0.00 0.00 0.00 3.18
1413 1435 4.537015 GGCCATCATATTTGCGAGTTAAC 58.463 43.478 0.00 0.00 0.00 2.01
1414 1436 3.568007 GGGCCATCATATTTGCGAGTTAA 59.432 43.478 4.39 0.00 0.00 2.01
1415 1437 3.146066 GGGCCATCATATTTGCGAGTTA 58.854 45.455 4.39 0.00 0.00 2.24
1416 1438 1.956477 GGGCCATCATATTTGCGAGTT 59.044 47.619 4.39 0.00 0.00 3.01
1417 1439 1.143684 AGGGCCATCATATTTGCGAGT 59.856 47.619 6.18 0.00 0.00 4.18
1418 1440 1.538512 CAGGGCCATCATATTTGCGAG 59.461 52.381 6.18 0.00 0.00 5.03
1419 1441 1.608055 CAGGGCCATCATATTTGCGA 58.392 50.000 6.18 0.00 0.00 5.10
1420 1442 0.599558 CCAGGGCCATCATATTTGCG 59.400 55.000 6.18 0.00 0.00 4.85
1421 1443 0.971386 CCCAGGGCCATCATATTTGC 59.029 55.000 6.18 0.00 0.00 3.68
1422 1444 0.971386 GCCCAGGGCCATCATATTTG 59.029 55.000 21.62 0.00 44.06 2.32
1423 1445 3.463045 GCCCAGGGCCATCATATTT 57.537 52.632 21.62 0.00 44.06 1.40
1446 1468 3.073650 AGCCTAGATATTGAGCCCAAAGG 59.926 47.826 0.00 0.00 35.67 3.11
1447 1469 4.202398 TGAGCCTAGATATTGAGCCCAAAG 60.202 45.833 0.00 0.00 35.67 2.77
1448 1470 3.716353 TGAGCCTAGATATTGAGCCCAAA 59.284 43.478 0.00 0.00 35.67 3.28
1449 1471 3.317406 TGAGCCTAGATATTGAGCCCAA 58.683 45.455 0.00 0.00 36.61 4.12
1450 1472 2.902486 CTGAGCCTAGATATTGAGCCCA 59.098 50.000 0.00 0.00 0.00 5.36
1451 1473 2.235898 CCTGAGCCTAGATATTGAGCCC 59.764 54.545 0.00 0.00 0.00 5.19
1452 1474 2.354604 GCCTGAGCCTAGATATTGAGCC 60.355 54.545 0.00 0.00 0.00 4.70
1453 1475 2.566724 AGCCTGAGCCTAGATATTGAGC 59.433 50.000 0.00 0.00 41.25 4.26
1454 1476 4.563168 CCAAGCCTGAGCCTAGATATTGAG 60.563 50.000 0.00 0.00 41.25 3.02
1455 1477 3.326006 CCAAGCCTGAGCCTAGATATTGA 59.674 47.826 0.00 0.00 41.25 2.57
1456 1478 3.672808 CCAAGCCTGAGCCTAGATATTG 58.327 50.000 0.00 0.00 41.25 1.90
1457 1479 2.039613 GCCAAGCCTGAGCCTAGATATT 59.960 50.000 0.00 0.00 41.25 1.28
1458 1480 1.627834 GCCAAGCCTGAGCCTAGATAT 59.372 52.381 0.00 0.00 41.25 1.63
1459 1481 1.051812 GCCAAGCCTGAGCCTAGATA 58.948 55.000 0.00 0.00 41.25 1.98
1460 1482 1.704007 GGCCAAGCCTGAGCCTAGAT 61.704 60.000 0.00 0.00 46.69 1.98
1461 1483 2.370445 GGCCAAGCCTGAGCCTAGA 61.370 63.158 0.00 0.00 46.69 2.43
1462 1484 2.191641 GGCCAAGCCTGAGCCTAG 59.808 66.667 0.00 0.00 46.69 3.02
1472 1494 0.826062 ATGTTGCTTATGGGCCAAGC 59.174 50.000 20.88 20.88 46.90 4.01
1473 1495 2.419021 CCAATGTTGCTTATGGGCCAAG 60.419 50.000 11.89 5.38 0.00 3.61
1474 1496 1.554160 CCAATGTTGCTTATGGGCCAA 59.446 47.619 11.89 0.00 0.00 4.52
1475 1497 1.193323 CCAATGTTGCTTATGGGCCA 58.807 50.000 9.61 9.61 0.00 5.36
1476 1498 0.465287 CCCAATGTTGCTTATGGGCC 59.535 55.000 0.00 0.00 45.56 5.80
1479 1501 1.137479 CTGGCCCAATGTTGCTTATGG 59.863 52.381 0.00 0.00 0.00 2.74
1480 1502 1.137479 CCTGGCCCAATGTTGCTTATG 59.863 52.381 0.00 0.00 0.00 1.90
1481 1503 1.488390 CCTGGCCCAATGTTGCTTAT 58.512 50.000 0.00 0.00 0.00 1.73
1482 1504 1.257055 GCCTGGCCCAATGTTGCTTA 61.257 55.000 7.66 0.00 0.00 3.09
1483 1505 2.586293 GCCTGGCCCAATGTTGCTT 61.586 57.895 7.66 0.00 0.00 3.91
1484 1506 2.999063 GCCTGGCCCAATGTTGCT 60.999 61.111 7.66 0.00 0.00 3.91
1485 1507 4.086547 GGCCTGGCCCAATGTTGC 62.087 66.667 27.77 0.00 44.06 4.17
1528 1550 2.174639 TGAAACTATACCTGGCCATGGG 59.825 50.000 20.97 16.10 0.00 4.00
1529 1551 3.214328 GTGAAACTATACCTGGCCATGG 58.786 50.000 5.51 13.05 0.00 3.66
1530 1552 3.117888 AGGTGAAACTATACCTGGCCATG 60.118 47.826 5.51 6.06 45.30 3.66
1531 1553 3.123273 AGGTGAAACTATACCTGGCCAT 58.877 45.455 5.51 0.00 45.30 4.40
1532 1554 2.557869 AGGTGAAACTATACCTGGCCA 58.442 47.619 4.71 4.71 45.30 5.36
1533 1555 3.181457 GGTAGGTGAAACTATACCTGGCC 60.181 52.174 0.00 0.00 46.40 5.36
1534 1556 4.069300 GGTAGGTGAAACTATACCTGGC 57.931 50.000 6.20 0.00 46.40 4.85
1538 1560 7.757941 CCTAGTAGGTAGGTGAAACTATACC 57.242 44.000 8.17 0.00 43.39 2.73
1573 1596 0.107017 ATCCATGGAAGCAGAACGGG 60.107 55.000 20.67 0.00 0.00 5.28
1575 1598 2.028420 TGATCCATGGAAGCAGAACG 57.972 50.000 20.67 0.00 0.00 3.95
1578 1601 2.775960 ACTGATGATCCATGGAAGCAGA 59.224 45.455 29.63 16.15 0.00 4.26
1589 1613 1.212616 GTGCTGCGTACTGATGATCC 58.787 55.000 0.00 0.00 0.00 3.36
1603 1627 2.393768 CCAAGCCGCTAGTGTGCTG 61.394 63.158 16.68 11.80 35.08 4.41
1606 1630 1.803334 TAAACCAAGCCGCTAGTGTG 58.197 50.000 1.99 0.00 0.00 3.82
1610 1634 4.434713 ACAAAATAAACCAAGCCGCTAG 57.565 40.909 0.00 0.00 0.00 3.42
1617 1641 7.328493 GCTACCAGCTAAACAAAATAAACCAAG 59.672 37.037 0.00 0.00 38.45 3.61
1653 1678 1.336332 CCAGAGTGACACGAGGAGTTG 60.336 57.143 7.89 0.00 0.00 3.16
1654 1679 0.962489 CCAGAGTGACACGAGGAGTT 59.038 55.000 7.89 0.00 0.00 3.01
1656 1681 1.248486 TTCCAGAGTGACACGAGGAG 58.752 55.000 13.75 0.00 0.00 3.69
1693 1733 0.465460 AACGAGACAAAGGCAGGCAA 60.465 50.000 0.00 0.00 0.00 4.52
1735 1775 6.096987 TCTCTCTACTGATTAATCACACCCAC 59.903 42.308 14.23 0.00 32.50 4.61
1738 1778 8.177119 AGATCTCTCTACTGATTAATCACACC 57.823 38.462 14.23 0.00 32.50 4.16
1758 1798 7.986320 CAGTGGAGAACAATAATTCTGAGATCT 59.014 37.037 0.00 0.00 39.08 2.75
1759 1799 7.984050 TCAGTGGAGAACAATAATTCTGAGATC 59.016 37.037 0.00 0.00 39.08 2.75
1760 1800 7.768120 GTCAGTGGAGAACAATAATTCTGAGAT 59.232 37.037 0.00 0.00 39.08 2.75
1761 1801 7.099764 GTCAGTGGAGAACAATAATTCTGAGA 58.900 38.462 0.00 0.00 39.08 3.27
1762 1802 6.875726 TGTCAGTGGAGAACAATAATTCTGAG 59.124 38.462 0.00 0.00 39.08 3.35
1763 1803 6.650807 GTGTCAGTGGAGAACAATAATTCTGA 59.349 38.462 0.00 0.00 39.08 3.27
1772 1812 3.469008 AATCGTGTCAGTGGAGAACAA 57.531 42.857 0.00 0.00 0.00 2.83
1789 1829 2.504367 ACACCCAGCACAACACTAATC 58.496 47.619 0.00 0.00 0.00 1.75
1800 1840 1.827789 GCCAGACAAACACCCAGCA 60.828 57.895 0.00 0.00 0.00 4.41
1801 1841 1.109323 AAGCCAGACAAACACCCAGC 61.109 55.000 0.00 0.00 0.00 4.85
1802 1842 1.067516 CAAAGCCAGACAAACACCCAG 59.932 52.381 0.00 0.00 0.00 4.45
1803 1843 1.110442 CAAAGCCAGACAAACACCCA 58.890 50.000 0.00 0.00 0.00 4.51
1805 1845 0.249447 GCCAAAGCCAGACAAACACC 60.249 55.000 0.00 0.00 0.00 4.16
1808 1848 0.598419 GCAGCCAAAGCCAGACAAAC 60.598 55.000 0.00 0.00 41.25 2.93
1810 1850 2.554636 CGCAGCCAAAGCCAGACAA 61.555 57.895 0.00 0.00 41.25 3.18
1824 1864 1.095228 ATGTTATCCAACCGCCGCAG 61.095 55.000 0.00 0.00 33.41 5.18
1827 1867 1.593196 ATCATGTTATCCAACCGCCG 58.407 50.000 0.00 0.00 33.41 6.46
1828 1868 2.687935 ACAATCATGTTATCCAACCGCC 59.312 45.455 0.00 0.00 35.91 6.13
1830 1870 5.588648 ACCTTACAATCATGTTATCCAACCG 59.411 40.000 0.00 0.00 41.05 4.44
1831 1871 7.228706 CCTACCTTACAATCATGTTATCCAACC 59.771 40.741 0.00 0.00 41.05 3.77
1832 1872 7.990886 TCCTACCTTACAATCATGTTATCCAAC 59.009 37.037 0.00 0.00 41.05 3.77
1839 1879 5.745227 CCTGTCCTACCTTACAATCATGTT 58.255 41.667 0.00 0.00 41.05 2.71
1840 1880 4.384208 GCCTGTCCTACCTTACAATCATGT 60.384 45.833 0.00 0.00 43.74 3.21
1875 1962 3.870633 AACATACGAAGACCCTGACTC 57.129 47.619 0.00 0.00 0.00 3.36
1890 1977 5.934043 CCAATCATATCAGCGAGGAAACATA 59.066 40.000 0.00 0.00 0.00 2.29
1901 1988 5.467705 GGAATGAAAGCCAATCATATCAGC 58.532 41.667 0.00 0.00 36.53 4.26
1902 1989 5.240183 ACGGAATGAAAGCCAATCATATCAG 59.760 40.000 0.00 2.71 36.53 2.90
1909 1996 4.440839 AGAAACGGAATGAAAGCCAATC 57.559 40.909 0.00 0.00 0.00 2.67
1942 2034 2.473530 TTTTGCTGTTGTCTCTTGCG 57.526 45.000 0.00 0.00 0.00 4.85
1943 2035 3.118542 CCTTTTTGCTGTTGTCTCTTGC 58.881 45.455 0.00 0.00 0.00 4.01
1944 2036 3.381272 TCCCTTTTTGCTGTTGTCTCTTG 59.619 43.478 0.00 0.00 0.00 3.02
1945 2037 3.631250 TCCCTTTTTGCTGTTGTCTCTT 58.369 40.909 0.00 0.00 0.00 2.85
1946 2038 3.297134 TCCCTTTTTGCTGTTGTCTCT 57.703 42.857 0.00 0.00 0.00 3.10
2011 2103 7.627311 TCAGCAATACTATATGCCATCATCTT 58.373 34.615 0.00 0.00 43.57 2.40
2020 2115 5.008415 GGGCATGATCAGCAATACTATATGC 59.992 44.000 15.83 9.42 42.87 3.14
2053 2159 8.128322 AGTATATAGGAAAAGCTGATCGACAT 57.872 34.615 0.00 0.00 0.00 3.06
2077 2183 8.234136 TCCACTATACCACAAAGTGATAGTAG 57.766 38.462 9.69 5.30 42.59 2.57
2078 2184 8.598202 TTCCACTATACCACAAAGTGATAGTA 57.402 34.615 9.69 1.09 42.59 1.82
2079 2185 7.490657 TTCCACTATACCACAAAGTGATAGT 57.509 36.000 3.37 2.78 42.59 2.12
2080 2186 8.830580 CAATTCCACTATACCACAAAGTGATAG 58.169 37.037 3.37 2.20 42.59 2.08
2081 2187 7.773224 CCAATTCCACTATACCACAAAGTGATA 59.227 37.037 3.37 0.00 42.59 2.15
2082 2188 6.603201 CCAATTCCACTATACCACAAAGTGAT 59.397 38.462 3.37 0.00 42.59 3.06
2083 2189 5.943416 CCAATTCCACTATACCACAAAGTGA 59.057 40.000 3.37 0.00 42.59 3.41
2084 2190 5.710099 ACCAATTCCACTATACCACAAAGTG 59.290 40.000 0.00 0.00 40.24 3.16
2088 2194 6.827586 GAAACCAATTCCACTATACCACAA 57.172 37.500 0.00 0.00 31.44 3.33
2112 2218 6.992123 TGCCATAAACCTGTAGATGATTACAG 59.008 38.462 6.27 6.27 46.46 2.74
2113 2219 6.894682 TGCCATAAACCTGTAGATGATTACA 58.105 36.000 0.00 0.00 32.86 2.41
2119 2225 2.545526 CGCTGCCATAAACCTGTAGATG 59.454 50.000 0.00 0.00 0.00 2.90
2122 2228 1.665679 CACGCTGCCATAAACCTGTAG 59.334 52.381 0.00 0.00 0.00 2.74
2135 2241 2.261037 TCATAAAATGTGCACGCTGC 57.739 45.000 13.13 3.44 45.29 5.25
2136 2242 4.082274 TCTTCATAAAATGTGCACGCTG 57.918 40.909 13.13 3.31 0.00 5.18
2137 2243 4.002982 TCTCTTCATAAAATGTGCACGCT 58.997 39.130 13.13 0.00 0.00 5.07
2144 2250 9.023962 TGGCTATTGTTTCTCTTCATAAAATGT 57.976 29.630 0.00 0.00 0.00 2.71
2158 2264 8.460831 ACGAACAAATTAATGGCTATTGTTTC 57.539 30.769 13.64 8.31 42.44 2.78
2165 2271 5.157781 GTGCAACGAACAAATTAATGGCTA 58.842 37.500 0.00 0.00 0.00 3.93
2182 2288 0.814010 AGGGAGTTGTCGTGTGCAAC 60.814 55.000 0.00 0.00 44.57 4.17
2214 2320 2.161012 GCCATCGATTCTATGCATGGTG 59.839 50.000 10.16 0.00 37.02 4.17
2216 2322 2.418976 CAGCCATCGATTCTATGCATGG 59.581 50.000 10.16 6.58 37.63 3.66
2217 2323 3.332034 TCAGCCATCGATTCTATGCATG 58.668 45.455 10.16 0.00 0.00 4.06
2218 2324 3.597255 CTCAGCCATCGATTCTATGCAT 58.403 45.455 3.79 3.79 0.00 3.96
2224 2332 2.492012 GATTGCTCAGCCATCGATTCT 58.508 47.619 0.00 0.00 0.00 2.40
2226 2334 1.602311 GGATTGCTCAGCCATCGATT 58.398 50.000 4.69 0.00 32.44 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.