Multiple sequence alignment - TraesCS3B01G106100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G106100 chr3B 100.000 6951 0 0 1 6951 71813390 71806440 0.000000e+00 12837.0
1 TraesCS3B01G106100 chr3B 79.042 167 27 6 6511 6671 425148076 425147912 2.650000e-19 108.0
2 TraesCS3B01G106100 chr3D 87.357 4295 285 113 1 4186 46119117 46123262 0.000000e+00 4686.0
3 TraesCS3B01G106100 chr3D 92.543 1998 95 19 4283 6267 46123314 46125270 0.000000e+00 2815.0
4 TraesCS3B01G106100 chr3D 89.062 128 13 1 6296 6423 46125267 46125393 2.600000e-34 158.0
5 TraesCS3B01G106100 chr3A 87.186 3543 278 85 756 4260 57804198 57807602 0.000000e+00 3866.0
6 TraesCS3B01G106100 chr3A 88.695 2468 191 46 4523 6942 57807860 57810287 0.000000e+00 2931.0
7 TraesCS3B01G106100 chr3A 80.402 597 56 24 3 582 57803535 57804087 1.400000e-106 398.0
8 TraesCS3B01G106100 chr3A 87.817 197 23 1 4283 4479 57807599 57807794 5.420000e-56 230.0
9 TraesCS3B01G106100 chr3A 87.129 101 11 2 6508 6607 443196049 443196148 5.700000e-21 113.0
10 TraesCS3B01G106100 chr3A 89.157 83 4 4 643 721 57804112 57804193 1.600000e-16 99.0
11 TraesCS3B01G106100 chr1B 85.609 271 28 8 1 269 23180903 23180642 2.470000e-69 274.0
12 TraesCS3B01G106100 chr1B 100.000 28 0 0 6774 6801 662234410 662234437 1.300000e-02 52.8
13 TraesCS3B01G106100 chr5B 85.621 153 16 5 6515 6662 680999570 680999721 9.330000e-34 156.0
14 TraesCS3B01G106100 chr1A 84.242 165 16 8 6512 6668 575199588 575199426 1.210000e-32 152.0
15 TraesCS3B01G106100 chr1A 98.077 52 1 0 5303 5354 28758956 28758905 2.670000e-14 91.6
16 TraesCS3B01G106100 chr5D 83.333 168 20 7 6510 6671 59247277 59247442 1.560000e-31 148.0
17 TraesCS3B01G106100 chr5D 90.323 62 6 0 5307 5368 472275345 472275284 1.610000e-11 82.4
18 TraesCS3B01G106100 chr4D 80.412 194 32 5 6751 6940 384895057 384894866 7.270000e-30 143.0
19 TraesCS3B01G106100 chr2A 82.738 168 20 4 6511 6671 637673779 637673944 2.610000e-29 141.0
20 TraesCS3B01G106100 chr2A 83.019 106 9 5 6574 6671 209244340 209244444 3.450000e-13 87.9
21 TraesCS3B01G106100 chr2B 81.977 172 20 10 6508 6671 448487203 448487035 1.220000e-27 135.0
22 TraesCS3B01G106100 chr7A 83.824 136 15 6 6512 6641 592083515 592083381 9.470000e-24 122.0
23 TraesCS3B01G106100 chr7D 95.833 72 1 2 5306 5376 428723344 428723274 1.580000e-21 115.0
24 TraesCS3B01G106100 chr7D 93.548 62 4 0 5307 5368 520411700 520411639 7.420000e-15 93.5
25 TraesCS3B01G106100 chr7D 98.039 51 1 0 5304 5354 234351157 234351207 9.600000e-14 89.8
26 TraesCS3B01G106100 chr7B 96.825 63 2 0 5306 5368 446152448 446152386 9.540000e-19 106.0
27 TraesCS3B01G106100 chr1D 84.000 100 15 1 6756 6854 360463410 360463509 2.060000e-15 95.3
28 TraesCS3B01G106100 chr5A 86.667 75 8 2 5295 5368 469894464 469894537 1.610000e-11 82.4
29 TraesCS3B01G106100 chr6D 85.714 77 9 2 1459 1534 116856885 116856960 5.780000e-11 80.5
30 TraesCS3B01G106100 chr6A 85.714 77 9 2 1459 1534 145126561 145126636 5.780000e-11 80.5
31 TraesCS3B01G106100 chr6B 84.416 77 10 2 1459 1534 207105691 207105766 2.690000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G106100 chr3B 71806440 71813390 6950 True 12837.0 12837 100.0000 1 6951 1 chr3B.!!$R1 6950
1 TraesCS3B01G106100 chr3D 46119117 46125393 6276 False 2553.0 4686 89.6540 1 6423 3 chr3D.!!$F1 6422
2 TraesCS3B01G106100 chr3A 57803535 57810287 6752 False 1504.8 3866 86.6514 3 6942 5 chr3A.!!$F2 6939

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 203 0.037232 GTCTCTGGTACGCAAAGCCT 60.037 55.0 0.00 0.0 0.00 4.58 F
1181 1317 0.036671 CGCTTCTACCCCGGAGTTTT 60.037 55.0 0.73 0.0 0.00 2.43 F
1281 1419 0.106519 CCCCCAATTCGGAGAAGCAT 60.107 55.0 0.00 0.0 45.90 3.79 F
2353 2553 0.252558 TCCTACCTGAACACCCTCCC 60.253 60.0 0.00 0.0 0.00 4.30 F
2673 2873 0.798776 CCATGTCAAGAAGTCACCGC 59.201 55.0 0.00 0.0 0.00 5.68 F
3987 4190 0.178981 ACTGCCACCAAATGCTCAGT 60.179 50.0 0.00 0.0 36.42 3.41 F
4522 4774 0.035343 GCTTTCCTCACCCTACACCC 60.035 60.0 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1201 1337 0.179189 GAATCTTGTTGCGCCGGAAG 60.179 55.000 5.05 3.83 0.00 3.46 R
2046 2246 1.972872 CAGCAACAAGAGGACAAGGT 58.027 50.000 0.00 0.00 0.00 3.50 R
2627 2827 2.172505 TGTGGCTGAACTGAGGAAAAGA 59.827 45.455 0.00 0.00 0.00 2.52 R
3884 4087 0.252375 AATGCATGGCAAGGGGAAGT 60.252 50.000 0.00 0.00 43.62 3.01 R
4351 4557 0.395311 TACAGGTAGTCGGGGAGCAG 60.395 60.000 0.00 0.00 0.00 4.24 R
5609 5863 0.401738 ACCTGGAACCACCACATGAG 59.598 55.000 0.00 0.00 44.64 2.90 R
6465 6742 0.109179 GTGCATTGCAAGGCGAATCA 60.109 50.000 28.58 10.19 41.47 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.648720 CGTTGTGGCTTGTGAGTGG 59.351 57.895 0.00 0.00 0.00 4.00
37 38 0.813610 CGTTGTGGCTTGTGAGTGGA 60.814 55.000 0.00 0.00 0.00 4.02
38 39 0.663153 GTTGTGGCTTGTGAGTGGAC 59.337 55.000 0.00 0.00 0.00 4.02
39 40 0.546122 TTGTGGCTTGTGAGTGGACT 59.454 50.000 0.00 0.00 0.00 3.85
40 41 1.419381 TGTGGCTTGTGAGTGGACTA 58.581 50.000 0.00 0.00 0.00 2.59
41 42 1.070134 TGTGGCTTGTGAGTGGACTAC 59.930 52.381 0.00 0.00 0.00 2.73
43 44 2.561419 GTGGCTTGTGAGTGGACTACTA 59.439 50.000 0.00 0.00 40.53 1.82
44 45 2.826128 TGGCTTGTGAGTGGACTACTAG 59.174 50.000 0.00 0.00 40.53 2.57
87 88 4.085357 TGTAGGCAGACACAACTCAATT 57.915 40.909 0.00 0.00 0.00 2.32
90 101 6.058833 TGTAGGCAGACACAACTCAATTAAA 58.941 36.000 0.00 0.00 0.00 1.52
118 129 1.305718 GACAGGCAGAGGGAGAGGT 60.306 63.158 0.00 0.00 0.00 3.85
119 130 1.611851 ACAGGCAGAGGGAGAGGTG 60.612 63.158 0.00 0.00 0.00 4.00
120 131 2.040278 AGGCAGAGGGAGAGGTGG 59.960 66.667 0.00 0.00 0.00 4.61
121 132 2.039624 GGCAGAGGGAGAGGTGGA 59.960 66.667 0.00 0.00 0.00 4.02
122 133 2.063378 GGCAGAGGGAGAGGTGGAG 61.063 68.421 0.00 0.00 0.00 3.86
123 134 1.000993 GCAGAGGGAGAGGTGGAGA 59.999 63.158 0.00 0.00 0.00 3.71
124 135 1.042559 GCAGAGGGAGAGGTGGAGAG 61.043 65.000 0.00 0.00 0.00 3.20
128 139 0.853586 AGGGAGAGGTGGAGAGGACT 60.854 60.000 0.00 0.00 0.00 3.85
145 156 1.079127 CTGTCACCGGGGTCATCAC 60.079 63.158 2.12 0.00 0.00 3.06
163 174 2.499693 TCACCTCGACTGCATTATTGGA 59.500 45.455 0.00 0.00 0.00 3.53
192 203 0.037232 GTCTCTGGTACGCAAAGCCT 60.037 55.000 0.00 0.00 0.00 4.58
216 230 3.983344 CGCACTTTCCTTGGATTTTTCAG 59.017 43.478 0.00 0.00 0.00 3.02
236 250 4.082354 TCAGTAGTTTAGCTTTCTCGGACC 60.082 45.833 0.00 0.00 0.00 4.46
254 268 6.285224 TCGGACCGAATTATTGTATGAATGT 58.715 36.000 15.79 0.00 31.06 2.71
255 269 6.201997 TCGGACCGAATTATTGTATGAATGTG 59.798 38.462 15.79 0.00 31.06 3.21
257 271 6.293955 GGACCGAATTATTGTATGAATGTGGG 60.294 42.308 0.00 0.00 0.00 4.61
258 272 5.534654 ACCGAATTATTGTATGAATGTGGGG 59.465 40.000 0.00 0.00 0.00 4.96
259 273 5.534654 CCGAATTATTGTATGAATGTGGGGT 59.465 40.000 0.00 0.00 0.00 4.95
260 274 6.712998 CCGAATTATTGTATGAATGTGGGGTA 59.287 38.462 0.00 0.00 0.00 3.69
261 275 7.393234 CCGAATTATTGTATGAATGTGGGGTAT 59.607 37.037 0.00 0.00 0.00 2.73
262 276 9.443323 CGAATTATTGTATGAATGTGGGGTATA 57.557 33.333 0.00 0.00 0.00 1.47
268 282 8.830915 TTGTATGAATGTGGGGTATAATTGTT 57.169 30.769 0.00 0.00 0.00 2.83
272 286 5.654650 TGAATGTGGGGTATAATTGTTGGTC 59.345 40.000 0.00 0.00 0.00 4.02
275 289 6.584471 TGTGGGGTATAATTGTTGGTCTAT 57.416 37.500 0.00 0.00 0.00 1.98
278 292 7.558444 TGTGGGGTATAATTGTTGGTCTATTTC 59.442 37.037 0.00 0.00 0.00 2.17
300 314 6.636454 TCTTGGTATAAACAAGGACTGGAT 57.364 37.500 14.87 0.00 44.13 3.41
310 324 3.245016 ACAAGGACTGGATCAGCAAATCA 60.245 43.478 0.00 0.00 34.37 2.57
392 413 4.292977 TGATGCTGTCTGTCTATGTACG 57.707 45.455 0.00 0.00 0.00 3.67
394 415 2.092323 TGCTGTCTGTCTATGTACGCT 58.908 47.619 0.00 0.00 0.00 5.07
395 416 2.097629 TGCTGTCTGTCTATGTACGCTC 59.902 50.000 0.00 0.00 0.00 5.03
396 417 2.851386 GCTGTCTGTCTATGTACGCTCG 60.851 54.545 0.00 0.00 0.00 5.03
397 418 2.608090 CTGTCTGTCTATGTACGCTCGA 59.392 50.000 0.00 0.00 0.00 4.04
398 419 3.203716 TGTCTGTCTATGTACGCTCGAT 58.796 45.455 0.00 0.00 0.00 3.59
399 420 3.002348 TGTCTGTCTATGTACGCTCGATG 59.998 47.826 0.00 0.00 0.00 3.84
400 421 2.548480 TCTGTCTATGTACGCTCGATGG 59.452 50.000 0.00 0.00 0.00 3.51
401 422 2.548480 CTGTCTATGTACGCTCGATGGA 59.452 50.000 0.00 0.00 0.00 3.41
402 423 2.548480 TGTCTATGTACGCTCGATGGAG 59.452 50.000 0.00 0.00 43.46 3.86
419 445 5.117745 CGATGGAGCTGAACAATTATACTCG 59.882 44.000 0.00 0.00 0.00 4.18
436 462 0.820226 TCGAGCTGGTGGAGAGAATG 59.180 55.000 0.00 0.00 0.00 2.67
451 486 3.323115 AGAGAATGCACAGACACAGAAGA 59.677 43.478 0.00 0.00 0.00 2.87
594 629 0.894141 CACAGTCACAGAGAGGGAGG 59.106 60.000 0.00 0.00 0.00 4.30
595 630 0.252012 ACAGTCACAGAGAGGGAGGG 60.252 60.000 0.00 0.00 0.00 4.30
596 631 0.040351 CAGTCACAGAGAGGGAGGGA 59.960 60.000 0.00 0.00 0.00 4.20
597 632 0.334676 AGTCACAGAGAGGGAGGGAG 59.665 60.000 0.00 0.00 0.00 4.30
598 633 0.333312 GTCACAGAGAGGGAGGGAGA 59.667 60.000 0.00 0.00 0.00 3.71
599 634 0.628522 TCACAGAGAGGGAGGGAGAG 59.371 60.000 0.00 0.00 0.00 3.20
600 635 0.628522 CACAGAGAGGGAGGGAGAGA 59.371 60.000 0.00 0.00 0.00 3.10
601 636 0.926293 ACAGAGAGGGAGGGAGAGAG 59.074 60.000 0.00 0.00 0.00 3.20
602 637 1.221635 CAGAGAGGGAGGGAGAGAGA 58.778 60.000 0.00 0.00 0.00 3.10
603 638 1.143684 CAGAGAGGGAGGGAGAGAGAG 59.856 61.905 0.00 0.00 0.00 3.20
604 639 1.010793 AGAGAGGGAGGGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
605 640 1.421646 GAGAGGGAGGGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
606 641 1.010793 AGAGGGAGGGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
607 642 1.421646 GAGGGAGGGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
608 643 1.010793 AGGGAGGGAGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
609 644 1.421646 GGGAGGGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
722 789 4.421515 CTCCACCAGCCCAGCAGG 62.422 72.222 0.00 0.00 41.13 4.85
742 809 2.360475 GCAGCACCAACCTCCCTC 60.360 66.667 0.00 0.00 0.00 4.30
745 812 2.936032 GCACCAACCTCCCTCCCT 60.936 66.667 0.00 0.00 0.00 4.20
747 814 2.125225 ACCAACCTCCCTCCCTCC 59.875 66.667 0.00 0.00 0.00 4.30
748 815 2.692741 CCAACCTCCCTCCCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
749 816 3.083997 CAACCTCCCTCCCTCCCG 61.084 72.222 0.00 0.00 0.00 5.14
771 840 2.378634 CCCCTCCATTCGCTTCCCT 61.379 63.158 0.00 0.00 0.00 4.20
772 841 1.147153 CCCTCCATTCGCTTCCCTC 59.853 63.158 0.00 0.00 0.00 4.30
773 842 1.227380 CCTCCATTCGCTTCCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
774 843 1.517832 CTCCATTCGCTTCCCTCGT 59.482 57.895 0.00 0.00 0.00 4.18
776 845 1.521681 CCATTCGCTTCCCTCGTCC 60.522 63.158 0.00 0.00 0.00 4.79
790 859 2.124151 GTCCGCCCGGTAGGAGTA 60.124 66.667 14.60 0.00 41.02 2.59
791 860 2.124151 TCCGCCCGGTAGGAGTAC 60.124 66.667 10.71 0.00 41.02 2.73
792 861 2.123982 CCGCCCGGTAGGAGTACT 60.124 66.667 6.60 0.00 41.02 2.73
846 923 1.182667 TTGATCGCCTTCCTTCTCGA 58.817 50.000 0.00 0.00 35.34 4.04
847 924 0.741326 TGATCGCCTTCCTTCTCGAG 59.259 55.000 5.93 5.93 34.30 4.04
848 925 0.741915 GATCGCCTTCCTTCTCGAGT 59.258 55.000 13.13 0.00 34.30 4.18
849 926 1.135333 GATCGCCTTCCTTCTCGAGTT 59.865 52.381 13.13 0.00 34.30 3.01
850 927 0.966920 TCGCCTTCCTTCTCGAGTTT 59.033 50.000 13.13 0.00 0.00 2.66
851 928 1.067776 TCGCCTTCCTTCTCGAGTTTC 60.068 52.381 13.13 0.00 0.00 2.78
852 929 1.067495 CGCCTTCCTTCTCGAGTTTCT 60.067 52.381 13.13 0.00 0.00 2.52
853 930 2.612604 GCCTTCCTTCTCGAGTTTCTC 58.387 52.381 13.13 0.00 0.00 2.87
854 931 2.675603 GCCTTCCTTCTCGAGTTTCTCC 60.676 54.545 13.13 0.00 0.00 3.71
855 932 2.829120 CCTTCCTTCTCGAGTTTCTCCT 59.171 50.000 13.13 0.00 0.00 3.69
856 933 3.259625 CCTTCCTTCTCGAGTTTCTCCTT 59.740 47.826 13.13 0.00 0.00 3.36
857 934 4.490743 CTTCCTTCTCGAGTTTCTCCTTC 58.509 47.826 13.13 0.00 0.00 3.46
858 935 3.768878 TCCTTCTCGAGTTTCTCCTTCT 58.231 45.455 13.13 0.00 0.00 2.85
859 936 3.759618 TCCTTCTCGAGTTTCTCCTTCTC 59.240 47.826 13.13 0.00 0.00 2.87
860 937 3.119280 CCTTCTCGAGTTTCTCCTTCTCC 60.119 52.174 13.13 0.00 0.00 3.71
861 938 3.443145 TCTCGAGTTTCTCCTTCTCCT 57.557 47.619 13.13 0.00 0.00 3.69
862 939 3.768878 TCTCGAGTTTCTCCTTCTCCTT 58.231 45.455 13.13 0.00 0.00 3.36
863 940 3.759618 TCTCGAGTTTCTCCTTCTCCTTC 59.240 47.826 13.13 0.00 0.00 3.46
864 941 3.761752 CTCGAGTTTCTCCTTCTCCTTCT 59.238 47.826 3.62 0.00 0.00 2.85
865 942 4.153411 TCGAGTTTCTCCTTCTCCTTCTT 58.847 43.478 0.00 0.00 0.00 2.52
866 943 4.021894 TCGAGTTTCTCCTTCTCCTTCTTG 60.022 45.833 0.00 0.00 0.00 3.02
878 955 3.901797 CTTCTTGCGGGCGGGTTCT 62.902 63.158 0.00 0.00 0.00 3.01
917 1013 2.043953 GCCGAGGCAGGGGAATTT 60.044 61.111 9.58 0.00 41.49 1.82
933 1029 1.801309 ATTTCGGTGCGGGTTGGTTG 61.801 55.000 0.00 0.00 0.00 3.77
936 1032 3.292159 GGTGCGGGTTGGTTGGTC 61.292 66.667 0.00 0.00 0.00 4.02
937 1033 3.292159 GTGCGGGTTGGTTGGTCC 61.292 66.667 0.00 0.00 0.00 4.46
938 1034 3.494254 TGCGGGTTGGTTGGTCCT 61.494 61.111 0.00 0.00 37.07 3.85
951 1047 1.241990 TGGTCCTGTCTTCTCCGTCG 61.242 60.000 0.00 0.00 0.00 5.12
1115 1243 2.190981 CGGCATCAACTACGAAGGTAC 58.809 52.381 0.00 0.00 0.00 3.34
1127 1256 1.005690 AAGGTACCCATCCCTCCCC 59.994 63.158 8.74 0.00 0.00 4.81
1141 1270 4.115199 CCCCCGCTCCCCTTTGAG 62.115 72.222 0.00 0.00 35.40 3.02
1143 1272 2.586792 CCCGCTCCCCTTTGAGAG 59.413 66.667 0.00 0.00 34.11 3.20
1169 1305 2.214347 CTCCTGTCGATCTCGCTTCTA 58.786 52.381 0.00 0.00 39.60 2.10
1174 1310 1.164662 TCGATCTCGCTTCTACCCCG 61.165 60.000 0.00 0.00 39.60 5.73
1181 1317 0.036671 CGCTTCTACCCCGGAGTTTT 60.037 55.000 0.73 0.00 0.00 2.43
1184 1320 2.551504 GCTTCTACCCCGGAGTTTTTCA 60.552 50.000 0.73 0.00 0.00 2.69
1191 1327 2.812011 CCCCGGAGTTTTTCACAAGTAG 59.188 50.000 0.73 0.00 0.00 2.57
1194 1330 4.760204 CCCGGAGTTTTTCACAAGTAGAAT 59.240 41.667 0.73 0.00 0.00 2.40
1197 1333 7.295930 CCGGAGTTTTTCACAAGTAGAATAAC 58.704 38.462 0.00 0.00 37.26 1.89
1198 1334 7.295930 CGGAGTTTTTCACAAGTAGAATAACC 58.704 38.462 0.00 0.00 37.52 2.85
1201 1337 7.858583 AGTTTTTCACAAGTAGAATAACCGTC 58.141 34.615 0.00 0.00 37.52 4.79
1237 1375 6.267471 ACAAGATTCAGCCAAATTGGTAAAGA 59.733 34.615 14.17 4.06 40.46 2.52
1271 1409 1.276138 CTTCTTGGCAACCCCCAATTC 59.724 52.381 0.00 0.00 43.51 2.17
1281 1419 0.106519 CCCCCAATTCGGAGAAGCAT 60.107 55.000 0.00 0.00 45.90 3.79
1282 1420 1.027357 CCCCAATTCGGAGAAGCATG 58.973 55.000 0.00 0.00 45.90 4.06
1296 1434 3.454573 CATGCCAATGCCGGTGCT 61.455 61.111 1.90 0.00 38.71 4.40
1297 1435 2.681064 ATGCCAATGCCGGTGCTT 60.681 55.556 1.90 0.00 38.71 3.91
1298 1436 2.713967 ATGCCAATGCCGGTGCTTC 61.714 57.895 1.90 0.00 38.71 3.86
1299 1437 4.133796 GCCAATGCCGGTGCTTCC 62.134 66.667 1.90 0.00 38.71 3.46
1326 1464 0.744414 TGCTTCCTCGCCATAACTGC 60.744 55.000 0.00 0.00 0.00 4.40
1338 1476 2.228822 CCATAACTGCTGCGGAGTTTTT 59.771 45.455 16.72 0.75 35.30 1.94
1341 1479 1.172812 ACTGCTGCGGAGTTTTTCCC 61.173 55.000 16.72 0.00 43.63 3.97
1345 1483 1.401905 GCTGCGGAGTTTTTCCCTATG 59.598 52.381 5.62 0.00 43.63 2.23
1346 1484 1.401905 CTGCGGAGTTTTTCCCTATGC 59.598 52.381 0.00 0.00 43.63 3.14
1366 1514 3.569277 TGCTGTTTGCTGCTAAGATTTGA 59.431 39.130 0.00 0.00 43.37 2.69
1563 1711 0.605083 GCTCTTTGCCCCTCCTTTTG 59.395 55.000 0.00 0.00 35.15 2.44
1573 1721 3.314388 CTCCTTTTGCTCACGCCGC 62.314 63.158 0.00 0.00 34.43 6.53
1595 1766 2.282251 TCTCCGGTGAGCGTCACT 60.282 61.111 0.00 0.00 46.19 3.41
1609 1782 1.891919 TCACTGGTGGCTGCGTTTC 60.892 57.895 0.70 0.00 0.00 2.78
1612 1785 0.320771 ACTGGTGGCTGCGTTTCTAG 60.321 55.000 0.00 0.00 0.00 2.43
1617 1790 0.685097 TGGCTGCGTTTCTAGGACTT 59.315 50.000 0.00 0.00 0.00 3.01
1632 1806 2.691011 AGGACTTATCTTCTCGCCTCAC 59.309 50.000 0.00 0.00 0.00 3.51
1675 1849 1.298859 GCCAACGCCTGTCTGGTAAG 61.299 60.000 0.00 0.00 38.35 2.34
1723 1897 0.453390 GGCTGCAATCTGTGTAAGCC 59.547 55.000 0.50 0.00 45.83 4.35
1726 1900 1.470098 CTGCAATCTGTGTAAGCCCAC 59.530 52.381 0.00 0.00 35.86 4.61
1728 1902 1.740025 GCAATCTGTGTAAGCCCACTC 59.260 52.381 0.00 0.00 36.30 3.51
1730 1904 3.369471 GCAATCTGTGTAAGCCCACTCTA 60.369 47.826 0.00 0.00 36.30 2.43
1732 1906 2.884320 TCTGTGTAAGCCCACTCTACA 58.116 47.619 0.00 0.00 36.30 2.74
1734 1908 3.838317 TCTGTGTAAGCCCACTCTACATT 59.162 43.478 0.00 0.00 36.30 2.71
1788 1983 4.864806 TGAAACGTATTGCTCTAGCTTCTG 59.135 41.667 3.26 0.00 42.66 3.02
1829 2025 7.875971 ACAAGTGTTCAACATATTTCCTCTTC 58.124 34.615 0.00 0.00 0.00 2.87
1841 2037 0.979665 TCCTCTTCTTGGACAGGCTG 59.020 55.000 14.16 14.16 0.00 4.85
1901 2097 4.453892 GGCAGGCTGGGGATGCTT 62.454 66.667 17.64 0.00 39.88 3.91
1910 2106 1.078143 GGGGATGCTTCAGACGCTT 60.078 57.895 0.00 0.00 0.00 4.68
1931 2127 5.123502 GCTTGACATGTCAGACAATCATCTT 59.876 40.000 26.48 0.00 41.13 2.40
1984 2180 7.201741 CGATCTCAAGAACCTCAACTATCTGTA 60.202 40.741 0.00 0.00 0.00 2.74
2034 2234 4.771590 TTTTCTGCCTTCTTGCTGTATG 57.228 40.909 0.00 0.00 0.00 2.39
2115 2315 6.928348 TCTGGAGTTTTACCTGAATCACTA 57.072 37.500 0.00 0.00 33.64 2.74
2162 2362 3.941483 GTGTATGTCCTGTGAATCCCTTG 59.059 47.826 0.00 0.00 0.00 3.61
2172 2372 6.216662 TCCTGTGAATCCCTTGGTTATTCTTA 59.783 38.462 11.00 3.24 32.12 2.10
2353 2553 0.252558 TCCTACCTGAACACCCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
2380 2580 6.090628 GCATGCTCTAGACTATTATTGCTCAC 59.909 42.308 11.37 0.00 0.00 3.51
2404 2604 6.710744 ACGCTCTCATTTCTTCTTTCCTTTAA 59.289 34.615 0.00 0.00 0.00 1.52
2414 2614 7.346751 TCTTCTTTCCTTTAATGTTGCTTGT 57.653 32.000 0.00 0.00 0.00 3.16
2415 2615 7.781056 TCTTCTTTCCTTTAATGTTGCTTGTT 58.219 30.769 0.00 0.00 0.00 2.83
2416 2616 8.257306 TCTTCTTTCCTTTAATGTTGCTTGTTT 58.743 29.630 0.00 0.00 0.00 2.83
2417 2617 8.419076 TTCTTTCCTTTAATGTTGCTTGTTTC 57.581 30.769 0.00 0.00 0.00 2.78
2418 2618 7.781056 TCTTTCCTTTAATGTTGCTTGTTTCT 58.219 30.769 0.00 0.00 0.00 2.52
2419 2619 8.908903 TCTTTCCTTTAATGTTGCTTGTTTCTA 58.091 29.630 0.00 0.00 0.00 2.10
2420 2620 8.865590 TTTCCTTTAATGTTGCTTGTTTCTAC 57.134 30.769 0.00 0.00 0.00 2.59
2614 2814 3.541632 TCTTTTGTTTCCTCTTCGCTGT 58.458 40.909 0.00 0.00 0.00 4.40
2627 2827 6.206634 TCCTCTTCGCTGTTCATATTTGTTTT 59.793 34.615 0.00 0.00 0.00 2.43
2673 2873 0.798776 CCATGTCAAGAAGTCACCGC 59.201 55.000 0.00 0.00 0.00 5.68
2803 3003 9.473007 TTGATGTAAATGGTAATGATCTTTCCA 57.527 29.630 11.95 11.95 0.00 3.53
2804 3004 9.123902 TGATGTAAATGGTAATGATCTTTCCAG 57.876 33.333 13.79 0.00 0.00 3.86
2824 3024 5.711506 TCCAGTGTTGTGCTTGATCATATTT 59.288 36.000 0.00 0.00 0.00 1.40
2825 3025 6.209192 TCCAGTGTTGTGCTTGATCATATTTT 59.791 34.615 0.00 0.00 0.00 1.82
2826 3026 6.869913 CCAGTGTTGTGCTTGATCATATTTTT 59.130 34.615 0.00 0.00 0.00 1.94
2827 3027 7.148705 CCAGTGTTGTGCTTGATCATATTTTTG 60.149 37.037 0.00 0.00 0.00 2.44
2828 3028 7.383029 CAGTGTTGTGCTTGATCATATTTTTGT 59.617 33.333 0.00 0.00 0.00 2.83
2829 3029 7.596248 AGTGTTGTGCTTGATCATATTTTTGTC 59.404 33.333 0.00 0.00 0.00 3.18
2830 3030 7.381948 GTGTTGTGCTTGATCATATTTTTGTCA 59.618 33.333 0.00 0.00 0.00 3.58
2831 3031 8.089597 TGTTGTGCTTGATCATATTTTTGTCAT 58.910 29.630 0.00 0.00 0.00 3.06
2832 3032 9.571810 GTTGTGCTTGATCATATTTTTGTCATA 57.428 29.630 0.00 0.00 0.00 2.15
2870 3070 2.442413 TCCTGCCCGGATTTAAACTTG 58.558 47.619 0.73 0.00 36.69 3.16
3020 3223 7.681939 TGGTTCATTTGACATACTTACCTTC 57.318 36.000 0.00 0.00 0.00 3.46
3058 3261 7.681939 TGGTTAACATTGGACTAATCTTCAC 57.318 36.000 8.10 0.00 0.00 3.18
3098 3301 7.435784 ACACCGTGTTAAATTCAAATAAACACC 59.564 33.333 18.63 8.95 44.36 4.16
3566 3769 6.012508 ACATATTAGGTGAAGGTGGATATGGG 60.013 42.308 0.00 0.00 32.85 4.00
3605 3808 5.605564 TCTTACGTGATGGTTCAATTGTG 57.394 39.130 5.13 0.00 32.48 3.33
3749 3952 6.412362 ACAGAGTGTGAGAGATTACTTGTT 57.588 37.500 0.00 0.00 0.00 2.83
3808 4011 1.275573 GCGTGGTTAGTCTCTTTCCCT 59.724 52.381 0.00 0.00 0.00 4.20
3811 4014 4.340381 GCGTGGTTAGTCTCTTTCCCTATA 59.660 45.833 0.00 0.00 0.00 1.31
3821 4024 6.039605 AGTCTCTTTCCCTATACGCTTAAGAC 59.960 42.308 6.67 0.00 0.00 3.01
3822 4025 5.889853 TCTCTTTCCCTATACGCTTAAGACA 59.110 40.000 6.67 0.00 0.00 3.41
3836 4039 8.739649 ACGCTTAAGACACTTTTAAGTACTAG 57.260 34.615 6.67 0.00 39.29 2.57
3837 4040 7.328005 ACGCTTAAGACACTTTTAAGTACTAGC 59.672 37.037 6.67 0.00 39.29 3.42
3838 4041 7.327761 CGCTTAAGACACTTTTAAGTACTAGCA 59.672 37.037 6.67 0.00 39.29 3.49
3839 4042 8.433893 GCTTAAGACACTTTTAAGTACTAGCAC 58.566 37.037 6.67 0.00 39.29 4.40
3844 4047 6.989659 ACACTTTTAAGTACTAGCACTAGCA 58.010 36.000 4.58 0.00 39.45 3.49
3845 4048 7.091443 ACACTTTTAAGTACTAGCACTAGCAG 58.909 38.462 4.58 0.00 39.45 4.24
3846 4049 7.091443 CACTTTTAAGTACTAGCACTAGCAGT 58.909 38.462 4.58 0.00 39.45 4.40
3847 4050 8.242053 CACTTTTAAGTACTAGCACTAGCAGTA 58.758 37.037 4.58 0.00 39.45 2.74
3849 4052 6.939132 TTAAGTACTAGCACTAGCAGTAGG 57.061 41.667 4.58 0.00 45.49 3.18
3850 4053 3.215975 AGTACTAGCACTAGCAGTAGGC 58.784 50.000 4.58 0.00 45.49 3.93
3862 4065 1.399791 GCAGTAGGCTCATTTCTGTGC 59.600 52.381 0.00 0.00 40.37 4.57
3863 4066 2.703416 CAGTAGGCTCATTTCTGTGCA 58.297 47.619 0.00 0.00 42.35 4.57
3864 4067 3.076621 CAGTAGGCTCATTTCTGTGCAA 58.923 45.455 0.00 0.00 42.35 4.08
3865 4068 3.503363 CAGTAGGCTCATTTCTGTGCAAA 59.497 43.478 0.00 0.00 42.35 3.68
3867 4070 4.768968 AGTAGGCTCATTTCTGTGCAAATT 59.231 37.500 0.00 0.00 42.35 1.82
3868 4071 4.184079 AGGCTCATTTCTGTGCAAATTC 57.816 40.909 0.00 0.00 42.35 2.17
3869 4072 3.575256 AGGCTCATTTCTGTGCAAATTCA 59.425 39.130 0.00 0.00 42.35 2.57
3870 4073 3.924686 GGCTCATTTCTGTGCAAATTCAG 59.075 43.478 0.00 0.00 42.35 3.02
3871 4074 4.553323 GCTCATTTCTGTGCAAATTCAGT 58.447 39.130 0.00 0.00 40.70 3.41
3872 4075 5.335897 GGCTCATTTCTGTGCAAATTCAGTA 60.336 40.000 0.00 0.00 42.35 2.74
3880 4083 9.677567 TTTCTGTGCAAATTCAGTAGTTTAATC 57.322 29.630 0.00 0.00 33.89 1.75
3884 4087 9.719355 TGTGCAAATTCAGTAGTTTAATCTCTA 57.281 29.630 0.00 0.00 0.00 2.43
3891 4094 7.657023 TCAGTAGTTTAATCTCTACTTCCCC 57.343 40.000 10.66 0.00 43.04 4.81
3917 4120 3.552273 CCATGCATTAGGCTCATTTCAGC 60.552 47.826 0.00 0.00 45.15 4.26
3920 4123 3.379372 TGCATTAGGCTCATTTCAGCTTC 59.621 43.478 0.00 0.00 45.15 3.86
3941 4144 4.482990 TCACAGTCTAGCATGGATCCATA 58.517 43.478 26.87 11.13 34.91 2.74
3987 4190 0.178981 ACTGCCACCAAATGCTCAGT 60.179 50.000 0.00 0.00 36.42 3.41
3999 4202 8.277713 CACCAAATGCTCAGTTTAAAATGAAAG 58.722 33.333 18.03 9.58 32.12 2.62
4001 4204 9.044150 CCAAATGCTCAGTTTAAAATGAAAGAA 57.956 29.630 18.03 4.20 32.12 2.52
4004 4207 7.698836 TGCTCAGTTTAAAATGAAAGAAAGC 57.301 32.000 18.03 16.12 32.12 3.51
4005 4208 6.417635 TGCTCAGTTTAAAATGAAAGAAAGCG 59.582 34.615 18.03 6.40 32.12 4.68
4006 4209 6.636850 GCTCAGTTTAAAATGAAAGAAAGCGA 59.363 34.615 18.03 0.00 32.12 4.93
4048 4251 3.259374 TCAGGACAAGAGATCCTCAACAC 59.741 47.826 0.00 0.00 45.25 3.32
4049 4252 3.007290 CAGGACAAGAGATCCTCAACACA 59.993 47.826 0.00 0.00 45.25 3.72
4051 4254 4.081198 AGGACAAGAGATCCTCAACACATC 60.081 45.833 0.00 0.00 43.49 3.06
4058 4261 3.708631 AGATCCTCAACACATCCACCTAG 59.291 47.826 0.00 0.00 0.00 3.02
4059 4262 2.187958 TCCTCAACACATCCACCTAGG 58.812 52.381 7.41 7.41 39.47 3.02
4063 4266 0.328258 AACACATCCACCTAGGGCAC 59.672 55.000 14.81 0.00 38.24 5.01
4067 4270 2.064581 ATCCACCTAGGGCACGTCC 61.065 63.158 14.81 0.00 38.24 4.79
4080 4283 3.445857 GGCACGTCCTATAGTTGTCTTC 58.554 50.000 0.00 0.00 0.00 2.87
4149 4355 1.071385 CTCATATGGTCTCCCAGCCAC 59.929 57.143 2.13 0.00 46.15 5.01
4155 4361 1.968540 GTCTCCCAGCCACTTGTGC 60.969 63.158 0.00 0.00 0.00 4.57
4172 4378 3.096092 TGTGCTTTTGAGTTTTGACCCT 58.904 40.909 0.00 0.00 0.00 4.34
4176 4382 3.634910 GCTTTTGAGTTTTGACCCTACCA 59.365 43.478 0.00 0.00 0.00 3.25
4188 4394 3.179685 GACCCTACCAGACCTACCTTTT 58.820 50.000 0.00 0.00 0.00 2.27
4189 4395 2.910977 ACCCTACCAGACCTACCTTTTG 59.089 50.000 0.00 0.00 0.00 2.44
4191 4397 2.572104 CCTACCAGACCTACCTTTTGCT 59.428 50.000 0.00 0.00 0.00 3.91
4193 4399 4.409247 CCTACCAGACCTACCTTTTGCTAT 59.591 45.833 0.00 0.00 0.00 2.97
4225 4431 1.576356 GTAGCTTCATCCTTCTGCCG 58.424 55.000 0.00 0.00 0.00 5.69
4226 4432 1.134670 GTAGCTTCATCCTTCTGCCGT 60.135 52.381 0.00 0.00 0.00 5.68
4240 4446 0.461548 TGCCGTGCCATCAAACAAAA 59.538 45.000 0.00 0.00 0.00 2.44
4242 4448 1.496934 CCGTGCCATCAAACAAAACC 58.503 50.000 0.00 0.00 0.00 3.27
4251 4457 5.278957 GCCATCAAACAAAACCTGACTATGT 60.279 40.000 0.00 0.00 0.00 2.29
4264 4470 6.893583 ACCTGACTATGTTGATTGCTTCTAT 58.106 36.000 0.00 0.00 0.00 1.98
4265 4471 7.341805 ACCTGACTATGTTGATTGCTTCTATT 58.658 34.615 0.00 0.00 0.00 1.73
4266 4472 8.486210 ACCTGACTATGTTGATTGCTTCTATTA 58.514 33.333 0.00 0.00 0.00 0.98
4267 4473 8.986847 CCTGACTATGTTGATTGCTTCTATTAG 58.013 37.037 0.00 0.00 0.00 1.73
4268 4474 9.755804 CTGACTATGTTGATTGCTTCTATTAGA 57.244 33.333 0.00 0.00 0.00 2.10
4332 4538 6.818644 GTGCTGATAGAAGTAGTTCCATCAAA 59.181 38.462 18.24 9.87 39.42 2.69
4364 4570 1.700955 GTATTCCTGCTCCCCGACTA 58.299 55.000 0.00 0.00 0.00 2.59
4376 4582 3.299503 TCCCCGACTACCTGTATTTACC 58.700 50.000 0.00 0.00 0.00 2.85
4382 4588 6.460676 CCCGACTACCTGTATTTACCTAAGTG 60.461 46.154 0.00 0.00 0.00 3.16
4389 4595 7.696017 ACCTGTATTTACCTAAGTGTCCATTT 58.304 34.615 0.00 0.00 0.00 2.32
4406 4612 4.826733 TCCATTTACATTTCACAGTGCACT 59.173 37.500 15.25 15.25 0.00 4.40
4458 4664 8.267183 TCCACAACATCACATGTCTAGATTTAT 58.733 33.333 0.00 0.00 44.07 1.40
4501 4753 4.618920 AAAGAAAGAGGCGTCTTAGGAA 57.381 40.909 21.14 0.00 42.59 3.36
4519 4771 3.418684 GAAAGCTTTCCTCACCCTACA 57.581 47.619 25.80 0.00 0.00 2.74
4520 4772 2.861147 AAGCTTTCCTCACCCTACAC 57.139 50.000 0.00 0.00 0.00 2.90
4521 4773 0.984995 AGCTTTCCTCACCCTACACC 59.015 55.000 0.00 0.00 0.00 4.16
4522 4774 0.035343 GCTTTCCTCACCCTACACCC 60.035 60.000 0.00 0.00 0.00 4.61
4523 4775 1.657804 CTTTCCTCACCCTACACCCT 58.342 55.000 0.00 0.00 0.00 4.34
4524 4776 1.985895 CTTTCCTCACCCTACACCCTT 59.014 52.381 0.00 0.00 0.00 3.95
4525 4777 2.127651 TTCCTCACCCTACACCCTTT 57.872 50.000 0.00 0.00 0.00 3.11
4526 4778 1.652947 TCCTCACCCTACACCCTTTC 58.347 55.000 0.00 0.00 0.00 2.62
4527 4779 0.618981 CCTCACCCTACACCCTTTCC 59.381 60.000 0.00 0.00 0.00 3.13
4528 4780 1.358152 CTCACCCTACACCCTTTCCA 58.642 55.000 0.00 0.00 0.00 3.53
4529 4781 1.702957 CTCACCCTACACCCTTTCCAA 59.297 52.381 0.00 0.00 0.00 3.53
4530 4782 1.702957 TCACCCTACACCCTTTCCAAG 59.297 52.381 0.00 0.00 0.00 3.61
4535 4787 5.132144 CACCCTACACCCTTTCCAAGTATAT 59.868 44.000 0.00 0.00 0.00 0.86
4551 4803 9.461312 TCCAAGTATATTATTCAGTTTGCAAGT 57.539 29.630 0.00 0.00 0.00 3.16
4552 4804 9.507280 CCAAGTATATTATTCAGTTTGCAAGTG 57.493 33.333 0.00 1.62 0.00 3.16
4565 4817 5.297029 AGTTTGCAAGTGAACTAACCTTCTC 59.703 40.000 0.00 0.00 34.52 2.87
4574 4826 6.015265 AGTGAACTAACCTTCTCCTTCAGTAC 60.015 42.308 0.00 0.00 0.00 2.73
4581 4833 4.773149 ACCTTCTCCTTCAGTACACCTAAG 59.227 45.833 0.00 0.00 0.00 2.18
4637 4890 1.871418 AGCCAGCTCTAGATTGGTCA 58.129 50.000 19.25 0.00 34.43 4.02
4652 4905 6.729428 AGATTGGTCAAGGAGAAAGATGATT 58.271 36.000 0.00 0.00 0.00 2.57
4688 4941 1.468054 CGAGGGCTGCTTTATTTGCAC 60.468 52.381 0.00 0.00 36.37 4.57
4718 4971 5.687285 GTGTGATCCAAAAATAATCCATCGC 59.313 40.000 0.00 0.00 0.00 4.58
4724 4977 4.911610 CCAAAAATAATCCATCGCGATGTC 59.088 41.667 38.53 0.00 37.11 3.06
4757 5010 8.192774 TCCAATGTGCTTCTTGATGAATATTTC 58.807 33.333 0.00 0.00 33.71 2.17
4772 5025 4.654091 ATATTTCGAAGCAATTGTGGGG 57.346 40.909 7.40 0.00 0.00 4.96
4778 5031 2.028203 CGAAGCAATTGTGGGGGATTTT 60.028 45.455 7.40 0.00 0.00 1.82
4782 5035 2.239402 GCAATTGTGGGGGATTTTGGAT 59.761 45.455 7.40 0.00 0.00 3.41
5022 5275 6.112734 AGCATGTTATATCGTGTTCTTTCCA 58.887 36.000 0.00 0.00 0.00 3.53
5078 5331 3.746492 GTGAAAAGAGCGCTTTCTCCTTA 59.254 43.478 13.26 0.00 43.32 2.69
5087 5340 3.190874 CGCTTTCTCCTTATGAGTGGAC 58.809 50.000 0.00 0.00 42.12 4.02
5101 5354 3.203716 GAGTGGACTTTGTTCGGTTCTT 58.796 45.455 0.00 0.00 0.00 2.52
5164 5417 2.409975 TGTCGCTTTTAGGTCCTTTCG 58.590 47.619 0.00 0.00 0.00 3.46
5421 5674 3.572255 AGAGTTCAGACTTCAGACCACTC 59.428 47.826 0.00 0.00 35.88 3.51
5429 5682 3.869065 ACTTCAGACCACTCGTCAAAAA 58.131 40.909 0.00 0.00 44.66 1.94
5490 5743 4.021192 ACATTTTGAAGGGTGCCAATACAG 60.021 41.667 0.00 0.00 0.00 2.74
5499 5752 5.380043 AGGGTGCCAATACAGAGAAATATG 58.620 41.667 0.00 0.00 0.00 1.78
5541 5795 6.763610 AGGTCTCTTCTTTGTGTTCTTTGTAG 59.236 38.462 0.00 0.00 0.00 2.74
5571 5825 5.237996 TCGATACGAAGAGATATTTCACGGT 59.762 40.000 13.87 4.11 31.06 4.83
5572 5826 5.913514 CGATACGAAGAGATATTTCACGGTT 59.086 40.000 13.87 4.69 0.00 4.44
5577 5831 5.523916 CGAAGAGATATTTCACGGTTGGAAT 59.476 40.000 0.00 0.00 34.97 3.01
5590 5844 3.368323 CGGTTGGAATTTGGAGGAAATGG 60.368 47.826 0.00 0.00 34.30 3.16
5598 5852 6.384015 GGAATTTGGAGGAAATGGGTCTTATT 59.616 38.462 0.00 0.00 34.30 1.40
5599 5853 7.092891 GGAATTTGGAGGAAATGGGTCTTATTT 60.093 37.037 0.00 0.00 34.30 1.40
5600 5854 6.850752 TTTGGAGGAAATGGGTCTTATTTC 57.149 37.500 0.00 0.00 41.53 2.17
5601 5855 5.796502 TGGAGGAAATGGGTCTTATTTCT 57.203 39.130 9.49 0.00 41.80 2.52
5602 5856 5.509498 TGGAGGAAATGGGTCTTATTTCTG 58.491 41.667 9.49 0.00 41.80 3.02
5603 5857 5.252863 TGGAGGAAATGGGTCTTATTTCTGA 59.747 40.000 9.49 0.00 41.80 3.27
5604 5858 6.068853 TGGAGGAAATGGGTCTTATTTCTGAT 60.069 38.462 9.49 0.00 41.80 2.90
5605 5859 7.128728 TGGAGGAAATGGGTCTTATTTCTGATA 59.871 37.037 9.49 0.00 41.80 2.15
5606 5860 7.445707 GGAGGAAATGGGTCTTATTTCTGATAC 59.554 40.741 9.49 0.00 41.80 2.24
5608 5862 8.560903 AGGAAATGGGTCTTATTTCTGATACTT 58.439 33.333 9.49 0.00 41.80 2.24
5609 5863 8.841300 GGAAATGGGTCTTATTTCTGATACTTC 58.159 37.037 9.49 0.00 41.80 3.01
5610 5864 9.620259 GAAATGGGTCTTATTTCTGATACTTCT 57.380 33.333 0.00 0.00 39.97 2.85
5644 5905 3.587061 TCCAGGTAAAGAAGCTCCATCAA 59.413 43.478 0.00 0.00 32.16 2.57
5728 5989 2.673523 GAGATGGTGCAGGTGGCT 59.326 61.111 0.00 0.00 45.15 4.75
5740 6001 3.360340 GTGGCTCTGCTGTGCACC 61.360 66.667 15.69 0.00 33.79 5.01
5803 6064 4.115199 ATGCTGGAAGGGGACGGC 62.115 66.667 0.00 0.00 39.40 5.68
5842 6103 1.299926 GTCGCAGAACGTGGACACT 60.300 57.895 0.00 0.00 44.19 3.55
5902 6163 2.192175 GATTTCGCCGGGGTGGAT 59.808 61.111 19.13 10.66 42.00 3.41
5954 6215 3.622826 CCGGACCAAGGTGACCGT 61.623 66.667 15.55 0.00 43.22 4.83
6021 6282 1.610522 GGCCATTGCATTCGATTAGCT 59.389 47.619 0.00 0.00 40.13 3.32
6120 6381 2.031258 TTGTACATACGGGCATGGTG 57.969 50.000 0.00 0.00 0.00 4.17
6177 6438 2.501316 TGCTGCTCATGTACATGTAGGT 59.499 45.455 30.03 0.00 39.72 3.08
6281 6555 1.000938 CTTCTTTGTCAGGCCTTGCAC 60.001 52.381 0.00 0.00 0.00 4.57
6285 6559 0.178995 TTGTCAGGCCTTGCACATGA 60.179 50.000 0.00 0.00 0.00 3.07
6287 6561 1.180029 GTCAGGCCTTGCACATGATT 58.820 50.000 0.00 0.00 0.00 2.57
6292 6566 2.756760 AGGCCTTGCACATGATTGTTAG 59.243 45.455 0.00 0.00 32.34 2.34
6293 6567 2.493278 GGCCTTGCACATGATTGTTAGT 59.507 45.455 0.00 0.00 32.34 2.24
6294 6568 3.694072 GGCCTTGCACATGATTGTTAGTA 59.306 43.478 0.00 0.00 32.34 1.82
6434 6711 2.793278 AAAACTGACGGAATGGTTGC 57.207 45.000 0.00 0.00 0.00 4.17
6443 6720 2.033448 AATGGTTGCGAGGCCGAA 59.967 55.556 0.00 0.00 38.22 4.30
6487 6764 0.103755 TTCGCCTTGCAATGCACAAA 59.896 45.000 23.68 12.97 38.71 2.83
6491 6768 2.211806 GCCTTGCAATGCACAAAGAAA 58.788 42.857 20.15 0.00 38.71 2.52
6525 6802 9.239551 ACTATTTGTAAAACTAGGTGATTTCCC 57.760 33.333 0.00 0.00 0.00 3.97
6531 6808 0.810031 CTAGGTGATTTCCCCACGCG 60.810 60.000 3.53 3.53 35.48 6.01
6538 6815 4.555709 TTCCCCACGCGTTGCTGT 62.556 61.111 10.22 0.00 0.00 4.40
6554 6831 5.345741 CGTTGCTGTGGGATTTTAAAGATTG 59.654 40.000 0.00 0.00 0.00 2.67
6621 6898 9.890629 AAAGCTATTATTATCAGAACTGTGTGA 57.109 29.630 1.73 0.00 0.00 3.58
6622 6899 8.879342 AGCTATTATTATCAGAACTGTGTGAC 57.121 34.615 1.73 0.00 28.18 3.67
6623 6900 8.478066 AGCTATTATTATCAGAACTGTGTGACA 58.522 33.333 1.73 0.00 28.18 3.58
6624 6901 8.543774 GCTATTATTATCAGAACTGTGTGACAC 58.456 37.037 9.14 9.14 28.18 3.67
6625 6902 9.586435 CTATTATTATCAGAACTGTGTGACACA 57.414 33.333 18.38 18.38 42.45 3.72
6646 6927 6.127925 ACACAAAGAGTATGCATGTACAATGG 60.128 38.462 10.16 0.00 0.00 3.16
6648 6929 6.094048 ACAAAGAGTATGCATGTACAATGGAC 59.906 38.462 10.16 0.00 0.00 4.02
6660 6941 7.428020 CATGTACAATGGACCATTAGAAATGG 58.572 38.462 19.41 15.50 44.54 3.16
6698 6979 8.954834 ATTTAGGCATTATTTGGTGATATGGA 57.045 30.769 0.00 0.00 0.00 3.41
6699 6980 8.408043 TTTAGGCATTATTTGGTGATATGGAG 57.592 34.615 0.00 0.00 0.00 3.86
6710 7006 2.880890 GTGATATGGAGGGTTGCATGTC 59.119 50.000 0.00 0.16 41.51 3.06
6746 7042 5.989777 CGTTAGTGGGGATCAACTATTTAGG 59.010 44.000 0.00 0.00 0.00 2.69
6785 7081 6.551385 AGAATTTTCTATCATAGCTTGCCG 57.449 37.500 0.00 0.00 35.34 5.69
6786 7082 6.058183 AGAATTTTCTATCATAGCTTGCCGT 58.942 36.000 0.00 0.00 35.34 5.68
6788 7084 7.386299 AGAATTTTCTATCATAGCTTGCCGTAG 59.614 37.037 0.00 0.00 35.34 3.51
6791 7087 5.122512 TCTATCATAGCTTGCCGTAGAAC 57.877 43.478 0.00 0.00 0.00 3.01
6799 7095 4.745649 AGCTTGCCGTAGAACTAGTTAAG 58.254 43.478 8.42 7.80 0.00 1.85
6801 7097 4.430908 CTTGCCGTAGAACTAGTTAAGGG 58.569 47.826 18.38 18.38 0.00 3.95
6808 7104 7.101700 CCGTAGAACTAGTTAAGGGTTTCAAT 58.898 38.462 8.42 0.00 0.00 2.57
6815 7111 7.519927 ACTAGTTAAGGGTTTCAATGGTGTAA 58.480 34.615 0.00 0.00 0.00 2.41
6821 7117 6.553953 AGGGTTTCAATGGTGTAAAAGTTT 57.446 33.333 0.00 0.00 0.00 2.66
6822 7118 6.953101 AGGGTTTCAATGGTGTAAAAGTTTT 58.047 32.000 6.06 6.06 0.00 2.43
6823 7119 7.045416 AGGGTTTCAATGGTGTAAAAGTTTTC 58.955 34.615 3.60 0.00 0.00 2.29
6831 7127 9.715123 CAATGGTGTAAAAGTTTTCAAAAATCC 57.285 29.630 3.60 1.94 0.00 3.01
6832 7128 9.679661 AATGGTGTAAAAGTTTTCAAAAATCCT 57.320 25.926 3.60 0.00 0.00 3.24
6844 7140 7.784633 TTTCAAAAATCCTAAAAAGGTGCTG 57.215 32.000 0.00 0.00 0.00 4.41
6858 7154 1.477923 GGTGCTGAAACAACACCCCTA 60.478 52.381 11.73 0.00 42.71 3.53
6862 7158 4.705023 GTGCTGAAACAACACCCCTATAAT 59.295 41.667 0.00 0.00 0.00 1.28
6874 7170 9.958180 CAACACCCCTATAATATAACATGATCA 57.042 33.333 0.00 0.00 0.00 2.92
6879 7175 9.884636 CCCCTATAATATAACATGATCAAACGA 57.115 33.333 0.00 0.00 0.00 3.85
6884 7180 7.477144 AATATAACATGATCAAACGAAGCGA 57.523 32.000 0.00 0.00 0.00 4.93
6886 7182 3.933155 ACATGATCAAACGAAGCGATC 57.067 42.857 0.00 0.00 36.82 3.69
6920 7218 7.730364 ACAACTTTATGTGTCCTAGACAAAG 57.270 36.000 0.00 2.64 44.49 2.77
6932 7234 8.890718 GTGTCCTAGACAAAGAAAAAGTAGTTT 58.109 33.333 0.00 0.00 44.49 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.648720 CACTCACAAGCCACAACGG 59.351 57.895 0.00 0.00 38.11 4.44
105 116 1.000993 TCTCCACCTCTCCCTCTGC 59.999 63.158 0.00 0.00 0.00 4.26
118 129 1.606601 CCGGTGACAGTCCTCTCCA 60.607 63.158 0.00 0.00 0.00 3.86
119 130 2.352032 CCCGGTGACAGTCCTCTCC 61.352 68.421 0.00 0.00 0.00 3.71
120 131 2.352032 CCCCGGTGACAGTCCTCTC 61.352 68.421 0.00 0.00 0.00 3.20
121 132 2.283966 CCCCGGTGACAGTCCTCT 60.284 66.667 0.00 0.00 0.00 3.69
122 133 2.603776 ACCCCGGTGACAGTCCTC 60.604 66.667 0.00 0.00 0.00 3.71
123 134 2.603776 GACCCCGGTGACAGTCCT 60.604 66.667 0.00 0.00 0.00 3.85
124 135 2.240162 GATGACCCCGGTGACAGTCC 62.240 65.000 0.00 0.00 0.00 3.85
128 139 2.589157 GGTGATGACCCCGGTGACA 61.589 63.158 0.00 0.00 36.03 3.58
145 156 2.213499 GGTCCAATAATGCAGTCGAGG 58.787 52.381 0.00 0.00 0.00 4.63
150 161 2.954318 GCAGATGGTCCAATAATGCAGT 59.046 45.455 13.23 0.00 32.58 4.40
163 174 0.324368 TACCAGAGACGGCAGATGGT 60.324 55.000 15.33 15.33 45.87 3.55
192 203 2.286365 AAATCCAAGGAAAGTGCGGA 57.714 45.000 0.00 0.00 0.00 5.54
216 230 3.119708 TCGGTCCGAGAAAGCTAAACTAC 60.120 47.826 10.71 0.00 0.00 2.73
236 250 6.633500 ACCCCACATTCATACAATAATTCG 57.367 37.500 0.00 0.00 0.00 3.34
254 268 7.878495 AGAAATAGACCAACAATTATACCCCA 58.122 34.615 0.00 0.00 0.00 4.96
255 269 8.630037 CAAGAAATAGACCAACAATTATACCCC 58.370 37.037 0.00 0.00 0.00 4.95
257 271 9.185680 ACCAAGAAATAGACCAACAATTATACC 57.814 33.333 0.00 0.00 0.00 2.73
264 278 9.575868 TGTTTATACCAAGAAATAGACCAACAA 57.424 29.630 0.00 0.00 0.00 2.83
265 279 9.575868 TTGTTTATACCAAGAAATAGACCAACA 57.424 29.630 0.00 0.00 0.00 3.33
267 281 9.238368 CCTTGTTTATACCAAGAAATAGACCAA 57.762 33.333 11.27 0.00 41.44 3.67
268 282 8.607713 TCCTTGTTTATACCAAGAAATAGACCA 58.392 33.333 11.27 0.00 41.44 4.02
272 286 8.893727 CCAGTCCTTGTTTATACCAAGAAATAG 58.106 37.037 11.27 0.00 41.44 1.73
275 289 6.843752 TCCAGTCCTTGTTTATACCAAGAAA 58.156 36.000 11.27 0.12 41.44 2.52
278 292 6.414732 TGATCCAGTCCTTGTTTATACCAAG 58.585 40.000 4.90 4.90 39.19 3.61
300 314 0.401356 TGTGCCTCCTGATTTGCTGA 59.599 50.000 0.00 0.00 0.00 4.26
310 324 1.338389 GCATGCATTTTTGTGCCTCCT 60.338 47.619 14.21 0.00 44.43 3.69
327 345 2.937799 CCAGCAACAAAAACAACAGCAT 59.062 40.909 0.00 0.00 0.00 3.79
394 415 6.161855 AGTATAATTGTTCAGCTCCATCGA 57.838 37.500 0.00 0.00 0.00 3.59
395 416 5.117745 CGAGTATAATTGTTCAGCTCCATCG 59.882 44.000 0.00 0.00 0.00 3.84
396 417 6.216569 TCGAGTATAATTGTTCAGCTCCATC 58.783 40.000 0.00 0.00 0.00 3.51
397 418 6.161855 TCGAGTATAATTGTTCAGCTCCAT 57.838 37.500 0.00 0.00 0.00 3.41
398 419 5.592054 CTCGAGTATAATTGTTCAGCTCCA 58.408 41.667 3.62 0.00 0.00 3.86
399 420 4.446051 GCTCGAGTATAATTGTTCAGCTCC 59.554 45.833 15.13 0.00 0.00 4.70
400 421 5.174761 CAGCTCGAGTATAATTGTTCAGCTC 59.825 44.000 15.13 0.00 32.36 4.09
401 422 5.046529 CAGCTCGAGTATAATTGTTCAGCT 58.953 41.667 15.13 0.00 35.05 4.24
402 423 4.210120 CCAGCTCGAGTATAATTGTTCAGC 59.790 45.833 15.13 0.00 0.00 4.26
403 424 5.233050 CACCAGCTCGAGTATAATTGTTCAG 59.767 44.000 15.13 0.00 0.00 3.02
404 425 5.109210 CACCAGCTCGAGTATAATTGTTCA 58.891 41.667 15.13 0.00 0.00 3.18
405 426 4.508124 CCACCAGCTCGAGTATAATTGTTC 59.492 45.833 15.13 0.00 0.00 3.18
419 445 0.251354 TGCATTCTCTCCACCAGCTC 59.749 55.000 0.00 0.00 0.00 4.09
436 462 2.533266 TTCCTCTTCTGTGTCTGTGC 57.467 50.000 0.00 0.00 0.00 4.57
451 486 0.921256 CCTCCTCCCACCCATTTCCT 60.921 60.000 0.00 0.00 0.00 3.36
594 629 1.771255 AGCCTCTCTCTCTCTCTCTCC 59.229 57.143 0.00 0.00 0.00 3.71
595 630 2.486191 CCAGCCTCTCTCTCTCTCTCTC 60.486 59.091 0.00 0.00 0.00 3.20
596 631 1.492176 CCAGCCTCTCTCTCTCTCTCT 59.508 57.143 0.00 0.00 0.00 3.10
597 632 1.477558 CCCAGCCTCTCTCTCTCTCTC 60.478 61.905 0.00 0.00 0.00 3.20
598 633 0.552848 CCCAGCCTCTCTCTCTCTCT 59.447 60.000 0.00 0.00 0.00 3.10
599 634 0.258774 ACCCAGCCTCTCTCTCTCTC 59.741 60.000 0.00 0.00 0.00 3.20
600 635 0.258774 GACCCAGCCTCTCTCTCTCT 59.741 60.000 0.00 0.00 0.00 3.10
601 636 0.755327 GGACCCAGCCTCTCTCTCTC 60.755 65.000 0.00 0.00 0.00 3.20
602 637 1.221213 AGGACCCAGCCTCTCTCTCT 61.221 60.000 0.00 0.00 30.76 3.10
603 638 0.325203 AAGGACCCAGCCTCTCTCTC 60.325 60.000 0.00 0.00 37.26 3.20
604 639 0.118144 AAAGGACCCAGCCTCTCTCT 59.882 55.000 0.00 0.00 37.26 3.10
605 640 0.988063 AAAAGGACCCAGCCTCTCTC 59.012 55.000 0.00 0.00 37.26 3.20
606 641 0.695347 CAAAAGGACCCAGCCTCTCT 59.305 55.000 0.00 0.00 37.26 3.10
607 642 0.322906 CCAAAAGGACCCAGCCTCTC 60.323 60.000 0.00 0.00 37.26 3.20
608 643 1.770324 CCAAAAGGACCCAGCCTCT 59.230 57.895 0.00 0.00 37.26 3.69
609 644 1.979155 GCCAAAAGGACCCAGCCTC 60.979 63.158 0.00 0.00 37.26 4.70
722 789 3.368571 GGAGGTTGGTGCTGCTGC 61.369 66.667 8.89 8.89 40.20 5.25
723 790 2.674380 GGGAGGTTGGTGCTGCTG 60.674 66.667 0.00 0.00 0.00 4.41
725 792 2.360475 GAGGGAGGTTGGTGCTGC 60.360 66.667 0.00 0.00 0.00 5.25
726 793 2.352805 GGAGGGAGGTTGGTGCTG 59.647 66.667 0.00 0.00 0.00 4.41
727 794 2.936032 GGGAGGGAGGTTGGTGCT 60.936 66.667 0.00 0.00 0.00 4.40
728 795 2.936032 AGGGAGGGAGGTTGGTGC 60.936 66.667 0.00 0.00 0.00 5.01
773 842 2.124151 TACTCCTACCGGGCGGAC 60.124 66.667 6.32 0.00 38.96 4.79
774 843 1.344953 TAGTACTCCTACCGGGCGGA 61.345 60.000 6.32 10.31 38.96 5.54
776 845 0.179034 ACTAGTACTCCTACCGGGCG 60.179 60.000 6.32 0.00 34.39 6.13
790 859 4.271661 GCCCGCCTATCTAATCTACTAGT 58.728 47.826 0.00 0.00 0.00 2.57
791 860 3.312973 CGCCCGCCTATCTAATCTACTAG 59.687 52.174 0.00 0.00 0.00 2.57
792 861 3.276857 CGCCCGCCTATCTAATCTACTA 58.723 50.000 0.00 0.00 0.00 1.82
846 923 3.556004 CGCAAGAAGGAGAAGGAGAAACT 60.556 47.826 0.00 0.00 43.02 2.66
847 924 2.739379 CGCAAGAAGGAGAAGGAGAAAC 59.261 50.000 0.00 0.00 43.02 2.78
848 925 2.289694 CCGCAAGAAGGAGAAGGAGAAA 60.290 50.000 0.00 0.00 43.02 2.52
849 926 1.276421 CCGCAAGAAGGAGAAGGAGAA 59.724 52.381 0.00 0.00 43.02 2.87
850 927 0.898320 CCGCAAGAAGGAGAAGGAGA 59.102 55.000 0.00 0.00 43.02 3.71
851 928 0.107945 CCCGCAAGAAGGAGAAGGAG 60.108 60.000 0.00 0.00 43.02 3.69
852 929 1.983224 CCCGCAAGAAGGAGAAGGA 59.017 57.895 0.00 0.00 43.02 3.36
853 930 1.746991 GCCCGCAAGAAGGAGAAGG 60.747 63.158 0.00 0.00 43.02 3.46
854 931 2.103042 CGCCCGCAAGAAGGAGAAG 61.103 63.158 0.00 0.00 43.02 2.85
855 932 2.047274 CGCCCGCAAGAAGGAGAA 60.047 61.111 0.00 0.00 43.02 2.87
856 933 4.082523 CCGCCCGCAAGAAGGAGA 62.083 66.667 0.00 0.00 43.02 3.71
860 937 3.431725 GAACCCGCCCGCAAGAAG 61.432 66.667 0.00 0.00 43.02 2.85
861 938 3.948719 AGAACCCGCCCGCAAGAA 61.949 61.111 0.00 0.00 43.02 2.52
862 939 4.697756 CAGAACCCGCCCGCAAGA 62.698 66.667 0.00 0.00 43.02 3.02
875 952 1.375652 GCAGCAGAGCAGAGCAGAA 60.376 57.895 0.00 0.00 0.00 3.02
878 955 4.754667 CGGCAGCAGAGCAGAGCA 62.755 66.667 0.00 0.00 35.83 4.26
908 1004 2.045340 CCGCACCGAAATTCCCCT 60.045 61.111 0.00 0.00 0.00 4.79
917 1013 4.939368 CCAACCAACCCGCACCGA 62.939 66.667 0.00 0.00 0.00 4.69
933 1029 1.507174 CGACGGAGAAGACAGGACC 59.493 63.158 0.00 0.00 0.00 4.46
935 1031 2.341101 GGCGACGGAGAAGACAGGA 61.341 63.158 0.00 0.00 0.00 3.86
936 1032 2.182030 GGCGACGGAGAAGACAGG 59.818 66.667 0.00 0.00 0.00 4.00
997 1093 3.461773 CGCCCACGTCTCCATCCT 61.462 66.667 0.00 0.00 33.53 3.24
1127 1256 2.124942 GCTCTCAAAGGGGAGCGG 60.125 66.667 0.19 0.00 44.01 5.52
1134 1263 2.072298 CAGGAGTTTCGCTCTCAAAGG 58.928 52.381 0.00 0.00 43.62 3.11
1135 1264 2.734079 GACAGGAGTTTCGCTCTCAAAG 59.266 50.000 0.00 0.00 43.62 2.77
1136 1265 2.755650 GACAGGAGTTTCGCTCTCAAA 58.244 47.619 0.00 0.00 43.62 2.69
1141 1270 1.133407 AGATCGACAGGAGTTTCGCTC 59.867 52.381 0.00 0.00 43.39 5.03
1143 1272 1.551145 GAGATCGACAGGAGTTTCGC 58.449 55.000 0.00 0.00 35.15 4.70
1154 1290 0.311477 GGGGTAGAAGCGAGATCGAC 59.689 60.000 6.39 0.00 43.02 4.20
1169 1305 1.064240 ACTTGTGAAAAACTCCGGGGT 60.064 47.619 0.00 0.00 0.00 4.95
1174 1310 7.041576 ACGGTTATTCTACTTGTGAAAAACTCC 60.042 37.037 0.00 0.00 0.00 3.85
1181 1317 6.161381 GGAAGACGGTTATTCTACTTGTGAA 58.839 40.000 6.89 0.00 0.00 3.18
1184 1320 4.741342 CGGAAGACGGTTATTCTACTTGT 58.259 43.478 6.89 0.00 39.42 3.16
1198 1334 3.295228 CTTGTTGCGCCGGAAGACG 62.295 63.158 5.05 0.00 43.80 4.18
1201 1337 0.179189 GAATCTTGTTGCGCCGGAAG 60.179 55.000 5.05 3.83 0.00 3.46
1281 1419 3.372730 GAAGCACCGGCATTGGCA 61.373 61.111 11.10 0.00 44.61 4.92
1282 1420 4.133796 GGAAGCACCGGCATTGGC 62.134 66.667 0.00 0.00 44.61 4.52
1300 1438 2.677979 GGCGAGGAAGCAACGGAAC 61.678 63.158 0.00 0.00 39.27 3.62
1326 1464 1.401905 GCATAGGGAAAAACTCCGCAG 59.598 52.381 0.00 0.00 46.51 5.18
1330 1468 4.809673 CAAACAGCATAGGGAAAAACTCC 58.190 43.478 0.00 0.00 44.54 3.85
1345 1483 4.164822 TCAAATCTTAGCAGCAAACAGC 57.835 40.909 0.00 0.00 46.19 4.40
1346 1484 5.946298 TCATCAAATCTTAGCAGCAAACAG 58.054 37.500 0.00 0.00 0.00 3.16
1366 1514 3.200385 AGAAGATTCAGGCTCAGCTTCAT 59.800 43.478 18.60 5.97 35.44 2.57
1573 1721 1.711060 GACGCTCACCGGAGAGAGAG 61.711 65.000 32.51 25.20 42.85 3.20
1595 1766 1.003839 CCTAGAAACGCAGCCACCA 60.004 57.895 0.00 0.00 0.00 4.17
1609 1782 4.023536 GTGAGGCGAGAAGATAAGTCCTAG 60.024 50.000 0.00 0.00 0.00 3.02
1612 1785 2.223852 GGTGAGGCGAGAAGATAAGTCC 60.224 54.545 0.00 0.00 0.00 3.85
1617 1790 1.751351 CACAGGTGAGGCGAGAAGATA 59.249 52.381 0.00 0.00 0.00 1.98
1632 1806 2.740055 GACCACTGCGAGCACAGG 60.740 66.667 8.85 8.85 42.21 4.00
1742 1937 7.322664 TCAGAGAAACTGCAAATTTGAGTTTT 58.677 30.769 29.01 23.00 45.38 2.43
1764 1959 5.005203 CAGAAGCTAGAGCAATACGTTTCAG 59.995 44.000 4.01 0.00 45.16 3.02
1788 1983 8.134895 TGAACACTTGTAATCTTTCATTTGTCC 58.865 33.333 0.00 0.00 0.00 4.02
1829 2025 0.535780 TCTGCAACAGCCTGTCCAAG 60.536 55.000 0.00 0.00 0.00 3.61
1901 2097 1.613437 TCTGACATGTCAAGCGTCTGA 59.387 47.619 27.63 16.99 39.39 3.27
1910 2106 6.108687 GGTAAGATGATTGTCTGACATGTCA 58.891 40.000 26.33 26.33 32.11 3.58
2015 2211 2.086869 GCATACAGCAAGAAGGCAGAA 58.913 47.619 0.00 0.00 44.79 3.02
2033 2233 2.295909 GGACAAGGTGTTAATTGCTGCA 59.704 45.455 0.00 0.00 0.00 4.41
2034 2234 2.558359 AGGACAAGGTGTTAATTGCTGC 59.442 45.455 0.00 0.00 0.00 5.25
2046 2246 1.972872 CAGCAACAAGAGGACAAGGT 58.027 50.000 0.00 0.00 0.00 3.50
2162 2362 9.688091 AGAGGAAAGAGGAAAATAAGAATAACC 57.312 33.333 0.00 0.00 0.00 2.85
2172 2372 6.234177 CAGTACACAGAGGAAAGAGGAAAAT 58.766 40.000 0.00 0.00 0.00 1.82
2353 2553 6.164876 AGCAATAATAGTCTAGAGCATGCAG 58.835 40.000 21.98 8.96 32.76 4.41
2380 2580 5.619625 AAAGGAAAGAAGAAATGAGAGCG 57.380 39.130 0.00 0.00 0.00 5.03
2404 2604 7.328277 TGTACAAAGTAGAAACAAGCAACAT 57.672 32.000 0.00 0.00 0.00 2.71
2586 2786 7.337942 AGCGAAGAGGAAACAAAAGAATATCAT 59.662 33.333 0.00 0.00 0.00 2.45
2594 2794 3.971032 ACAGCGAAGAGGAAACAAAAG 57.029 42.857 0.00 0.00 0.00 2.27
2601 2801 5.245531 ACAAATATGAACAGCGAAGAGGAA 58.754 37.500 0.00 0.00 0.00 3.36
2627 2827 2.172505 TGTGGCTGAACTGAGGAAAAGA 59.827 45.455 0.00 0.00 0.00 2.52
2673 2873 3.473625 TGCTCCACAGATGATAGCAATG 58.526 45.455 0.00 0.00 39.94 2.82
2795 2995 3.554934 TCAAGCACAACACTGGAAAGAT 58.445 40.909 0.00 0.00 0.00 2.40
2801 3001 5.571784 AATATGATCAAGCACAACACTGG 57.428 39.130 0.00 0.00 0.00 4.00
2803 3003 7.436118 ACAAAAATATGATCAAGCACAACACT 58.564 30.769 0.00 0.00 0.00 3.55
2804 3004 7.381948 TGACAAAAATATGATCAAGCACAACAC 59.618 33.333 0.00 0.00 0.00 3.32
2834 3034 6.015519 CCGGGCAGGATTAATATGATCAAAAA 60.016 38.462 0.00 0.00 45.00 1.94
2835 3035 5.476599 CCGGGCAGGATTAATATGATCAAAA 59.523 40.000 0.00 0.00 45.00 2.44
2836 3036 5.009631 CCGGGCAGGATTAATATGATCAAA 58.990 41.667 0.00 0.00 45.00 2.69
2837 3037 4.288366 TCCGGGCAGGATTAATATGATCAA 59.712 41.667 0.91 0.00 45.98 2.57
2838 3038 3.843619 TCCGGGCAGGATTAATATGATCA 59.156 43.478 0.91 0.00 45.98 2.92
2839 3039 4.487714 TCCGGGCAGGATTAATATGATC 57.512 45.455 0.91 0.00 45.98 2.92
2851 3051 2.442413 TCAAGTTTAAATCCGGGCAGG 58.558 47.619 0.00 0.00 42.97 4.85
2992 3195 6.433093 GGTAAGTATGTCAAATGAACCAAGGT 59.567 38.462 0.00 0.00 0.00 3.50
2993 3196 6.659242 AGGTAAGTATGTCAAATGAACCAAGG 59.341 38.462 0.00 0.00 0.00 3.61
3020 3223 3.252215 TGTTAACCATTCAGCTTTGACCG 59.748 43.478 2.48 0.00 0.00 4.79
3058 3261 9.680315 TTTAACACGGTGTGGAAATTAAATAAG 57.320 29.630 15.53 0.00 37.94 1.73
3566 3769 8.408601 TCACGTAAGAAACCCTTGTATACTATC 58.591 37.037 4.17 0.00 43.62 2.08
3605 3808 6.482308 TGTAGTCTTTCAGTCTTTTAACAGCC 59.518 38.462 0.00 0.00 0.00 4.85
3749 3952 8.004215 ACACTTCCATTTGGCATATAAGGATAA 58.996 33.333 0.00 0.00 34.44 1.75
3811 4014 7.328005 GCTAGTACTTAAAAGTGTCTTAAGCGT 59.672 37.037 0.00 0.00 39.12 5.07
3821 4024 7.091443 ACTGCTAGTGCTAGTACTTAAAAGTG 58.909 38.462 19.04 9.53 38.82 3.16
3822 4025 7.229581 ACTGCTAGTGCTAGTACTTAAAAGT 57.770 36.000 19.04 13.77 40.42 2.66
3842 4045 1.399791 GCACAGAAATGAGCCTACTGC 59.600 52.381 0.00 0.00 41.71 4.40
3844 4047 3.423539 TTGCACAGAAATGAGCCTACT 57.576 42.857 0.00 0.00 0.00 2.57
3845 4048 4.708726 ATTTGCACAGAAATGAGCCTAC 57.291 40.909 0.00 0.00 0.00 3.18
3846 4049 4.766373 TGAATTTGCACAGAAATGAGCCTA 59.234 37.500 0.00 0.00 0.00 3.93
3847 4050 3.575256 TGAATTTGCACAGAAATGAGCCT 59.425 39.130 0.00 0.00 0.00 4.58
3849 4052 4.553323 ACTGAATTTGCACAGAAATGAGC 58.447 39.130 8.88 0.00 37.54 4.26
3850 4053 6.906659 ACTACTGAATTTGCACAGAAATGAG 58.093 36.000 8.88 0.00 37.54 2.90
3851 4054 6.882610 ACTACTGAATTTGCACAGAAATGA 57.117 33.333 8.88 0.00 37.54 2.57
3852 4055 7.935338 AAACTACTGAATTTGCACAGAAATG 57.065 32.000 8.88 0.00 37.54 2.32
3855 4058 9.066892 AGATTAAACTACTGAATTTGCACAGAA 57.933 29.630 8.88 0.00 37.54 3.02
3856 4059 8.621532 AGATTAAACTACTGAATTTGCACAGA 57.378 30.769 8.88 0.00 37.54 3.41
3857 4060 8.725148 AGAGATTAAACTACTGAATTTGCACAG 58.275 33.333 0.75 0.75 39.65 3.66
3859 4062 9.974750 GTAGAGATTAAACTACTGAATTTGCAC 57.025 33.333 0.00 0.00 36.87 4.57
3860 4063 9.944376 AGTAGAGATTAAACTACTGAATTTGCA 57.056 29.630 14.90 0.00 44.75 4.08
3865 4068 8.706521 GGGGAAGTAGAGATTAAACTACTGAAT 58.293 37.037 15.79 6.01 45.40 2.57
3867 4070 7.420029 AGGGGAAGTAGAGATTAAACTACTGA 58.580 38.462 15.79 0.00 45.40 3.41
3868 4071 7.663043 AGGGGAAGTAGAGATTAAACTACTG 57.337 40.000 15.79 0.00 45.40 2.74
3870 4073 6.762187 GCAAGGGGAAGTAGAGATTAAACTAC 59.238 42.308 0.00 0.00 39.15 2.73
3871 4074 6.126854 GGCAAGGGGAAGTAGAGATTAAACTA 60.127 42.308 0.00 0.00 0.00 2.24
3872 4075 5.339282 GGCAAGGGGAAGTAGAGATTAAACT 60.339 44.000 0.00 0.00 0.00 2.66
3880 4083 1.748591 GCATGGCAAGGGGAAGTAGAG 60.749 57.143 0.00 0.00 0.00 2.43
3884 4087 0.252375 AATGCATGGCAAGGGGAAGT 60.252 50.000 0.00 0.00 43.62 3.01
3888 4091 2.433217 CCTAATGCATGGCAAGGGG 58.567 57.895 0.00 0.00 43.62 4.79
3917 4120 3.133542 TGGATCCATGCTAGACTGTGAAG 59.866 47.826 11.44 0.00 0.00 3.02
3920 4123 3.766068 ATGGATCCATGCTAGACTGTG 57.234 47.619 26.78 0.00 35.03 3.66
3987 4190 7.167468 GTCAGCTTCGCTTTCTTTCATTTTAAA 59.833 33.333 0.00 0.00 36.40 1.52
3999 4202 1.502231 TGAGTGTCAGCTTCGCTTTC 58.498 50.000 3.70 0.00 36.40 2.62
4001 4204 2.175878 AATGAGTGTCAGCTTCGCTT 57.824 45.000 3.70 0.00 36.40 4.68
4002 4205 2.611518 GTAATGAGTGTCAGCTTCGCT 58.388 47.619 1.94 1.94 40.77 4.93
4003 4206 1.661112 GGTAATGAGTGTCAGCTTCGC 59.339 52.381 0.00 0.00 0.00 4.70
4004 4207 1.920574 CGGTAATGAGTGTCAGCTTCG 59.079 52.381 0.00 0.00 0.00 3.79
4005 4208 2.960819 ACGGTAATGAGTGTCAGCTTC 58.039 47.619 0.00 0.00 0.00 3.86
4006 4209 3.244078 TGAACGGTAATGAGTGTCAGCTT 60.244 43.478 0.00 0.00 0.00 3.74
4017 4220 4.188247 TCTCTTGTCCTGAACGGTAATG 57.812 45.455 0.00 0.00 0.00 1.90
4018 4221 4.141914 GGATCTCTTGTCCTGAACGGTAAT 60.142 45.833 0.00 0.00 32.85 1.89
4022 4225 1.827969 AGGATCTCTTGTCCTGAACGG 59.172 52.381 0.00 0.00 44.30 4.44
4048 4251 1.144057 GACGTGCCCTAGGTGGATG 59.856 63.158 8.29 8.55 38.35 3.51
4049 4252 2.064581 GGACGTGCCCTAGGTGGAT 61.065 63.158 8.29 0.00 38.35 3.41
4051 4254 0.759436 ATAGGACGTGCCCTAGGTGG 60.759 60.000 8.29 0.00 41.69 4.61
4058 4261 1.755380 AGACAACTATAGGACGTGCCC 59.245 52.381 2.38 0.00 37.37 5.36
4059 4262 3.130693 AGAAGACAACTATAGGACGTGCC 59.869 47.826 2.38 0.00 0.00 5.01
4063 4266 4.336993 AGCAGAGAAGACAACTATAGGACG 59.663 45.833 4.43 0.00 0.00 4.79
4067 4270 9.081997 CACTAAAAGCAGAGAAGACAACTATAG 57.918 37.037 0.00 0.00 0.00 1.31
4149 4355 3.865164 GGGTCAAAACTCAAAAGCACAAG 59.135 43.478 0.00 0.00 0.00 3.16
4155 4361 5.008712 GTCTGGTAGGGTCAAAACTCAAAAG 59.991 44.000 0.00 0.00 0.00 2.27
4172 4378 8.967779 ATATATAGCAAAAGGTAGGTCTGGTA 57.032 34.615 0.00 0.00 0.00 3.25
4176 4382 8.763601 GGATGATATATAGCAAAAGGTAGGTCT 58.236 37.037 4.53 0.00 0.00 3.85
4188 4394 5.781827 AGCTACCCAGGATGATATATAGCA 58.218 41.667 2.64 2.64 39.69 3.49
4189 4395 6.325028 TGAAGCTACCCAGGATGATATATAGC 59.675 42.308 0.00 0.00 39.69 2.97
4191 4397 7.510685 GGATGAAGCTACCCAGGATGATATATA 59.489 40.741 0.00 0.00 39.69 0.86
4193 4399 5.663106 GGATGAAGCTACCCAGGATGATATA 59.337 44.000 0.00 0.00 39.69 0.86
4225 4431 3.123050 GTCAGGTTTTGTTTGATGGCAC 58.877 45.455 0.00 0.00 0.00 5.01
4226 4432 3.030291 AGTCAGGTTTTGTTTGATGGCA 58.970 40.909 0.00 0.00 0.00 4.92
4240 4446 5.171339 AGAAGCAATCAACATAGTCAGGT 57.829 39.130 0.00 0.00 0.00 4.00
4242 4448 9.755804 TCTAATAGAAGCAATCAACATAGTCAG 57.244 33.333 0.00 0.00 0.00 3.51
4271 4477 3.831911 CCAATAGAAGCACCCCTCAAAAA 59.168 43.478 0.00 0.00 0.00 1.94
4272 4478 3.075283 TCCAATAGAAGCACCCCTCAAAA 59.925 43.478 0.00 0.00 0.00 2.44
4273 4479 2.647299 TCCAATAGAAGCACCCCTCAAA 59.353 45.455 0.00 0.00 0.00 2.69
4274 4480 2.274542 TCCAATAGAAGCACCCCTCAA 58.725 47.619 0.00 0.00 0.00 3.02
4275 4481 1.965414 TCCAATAGAAGCACCCCTCA 58.035 50.000 0.00 0.00 0.00 3.86
4276 4482 2.924421 CTTCCAATAGAAGCACCCCTC 58.076 52.381 0.00 0.00 45.38 4.30
4282 4488 7.256190 ACAAGTAGTGTACTTCCAATAGAAGCA 60.256 37.037 2.41 0.00 45.38 3.91
4283 4489 7.097834 ACAAGTAGTGTACTTCCAATAGAAGC 58.902 38.462 2.41 0.00 45.38 3.86
4284 4490 8.467402 CACAAGTAGTGTACTTCCAATAGAAG 57.533 38.462 0.97 0.97 45.38 2.85
4303 4509 5.246203 TGGAACTACTTCTATCAGCACAAGT 59.754 40.000 0.00 0.00 33.63 3.16
4332 4538 8.793592 GGGAGCAGGAATACGATTTAAATTAAT 58.206 33.333 1.43 0.00 0.00 1.40
4339 4545 2.036733 CGGGGAGCAGGAATACGATTTA 59.963 50.000 0.00 0.00 0.00 1.40
4345 4551 1.340568 GTAGTCGGGGAGCAGGAATAC 59.659 57.143 0.00 0.00 0.00 1.89
4351 4557 0.395311 TACAGGTAGTCGGGGAGCAG 60.395 60.000 0.00 0.00 0.00 4.24
4357 4563 5.595952 ACTTAGGTAAATACAGGTAGTCGGG 59.404 44.000 0.00 0.00 0.00 5.14
4364 4570 6.886178 ATGGACACTTAGGTAAATACAGGT 57.114 37.500 0.00 0.00 0.00 4.00
4376 4582 8.017373 CACTGTGAAATGTAAATGGACACTTAG 58.983 37.037 0.32 0.00 30.52 2.18
4382 4588 4.917415 GTGCACTGTGAAATGTAAATGGAC 59.083 41.667 12.86 0.00 0.00 4.02
4389 4595 8.458052 CCAAAATATAGTGCACTGTGAAATGTA 58.542 33.333 29.57 6.09 0.00 2.29
4479 4685 4.618920 TCCTAAGACGCCTCTTTCTTTT 57.381 40.909 3.21 0.00 37.87 2.27
4501 4753 1.351350 GGTGTAGGGTGAGGAAAGCTT 59.649 52.381 0.00 0.00 0.00 3.74
4510 4762 1.702957 CTTGGAAAGGGTGTAGGGTGA 59.297 52.381 0.00 0.00 41.27 4.02
4511 4763 2.200373 CTTGGAAAGGGTGTAGGGTG 57.800 55.000 0.00 0.00 41.27 4.61
4525 4777 9.461312 ACTTGCAAACTGAATAATATACTTGGA 57.539 29.630 0.00 0.00 0.00 3.53
4526 4778 9.507280 CACTTGCAAACTGAATAATATACTTGG 57.493 33.333 0.00 0.00 0.00 3.61
4535 4787 7.284489 AGGTTAGTTCACTTGCAAACTGAATAA 59.716 33.333 17.78 14.36 36.44 1.40
4551 4803 5.836898 TGTACTGAAGGAGAAGGTTAGTTCA 59.163 40.000 0.00 0.00 0.00 3.18
4552 4804 6.157904 GTGTACTGAAGGAGAAGGTTAGTTC 58.842 44.000 0.00 0.00 0.00 3.01
4565 4817 4.020128 AGGAAAGCTTAGGTGTACTGAAGG 60.020 45.833 0.00 0.00 0.00 3.46
4574 4826 4.525912 AAAATGCAGGAAAGCTTAGGTG 57.474 40.909 0.00 0.00 34.99 4.00
4637 4890 4.015084 CCAGTGCAATCATCTTTCTCCTT 58.985 43.478 0.00 0.00 0.00 3.36
4652 4905 2.030412 CGTGCTGTACCCAGTGCA 59.970 61.111 0.00 0.00 41.02 4.57
4667 4920 0.811281 GCAAATAAAGCAGCCCTCGT 59.189 50.000 0.00 0.00 0.00 4.18
4668 4921 0.810648 TGCAAATAAAGCAGCCCTCG 59.189 50.000 0.00 0.00 37.02 4.63
4688 4941 6.747280 GGATTATTTTTGGATCACACTGTTCG 59.253 38.462 0.00 0.00 0.00 3.95
4718 4971 2.086869 ACATTGGAGGCTTTGACATCG 58.913 47.619 0.00 0.00 0.00 3.84
4724 4977 1.891150 AGAAGCACATTGGAGGCTTTG 59.109 47.619 11.90 0.00 47.00 2.77
4757 5010 1.185315 AATCCCCCACAATTGCTTCG 58.815 50.000 5.05 0.00 0.00 3.79
4772 5025 6.207928 CAAAAGTTTTGCCAATCCAAAATCC 58.792 36.000 15.06 0.00 43.93 3.01
4778 5031 4.102210 TGATCCAAAAGTTTTGCCAATCCA 59.898 37.500 20.74 10.16 0.00 3.41
4782 5035 3.198635 TGGTGATCCAAAAGTTTTGCCAA 59.801 39.130 20.74 10.01 41.25 4.52
5022 5275 3.759581 AGTGAACTTGAGACCATTGCAT 58.240 40.909 0.00 0.00 0.00 3.96
5078 5331 2.930826 ACCGAACAAAGTCCACTCAT 57.069 45.000 0.00 0.00 0.00 2.90
5087 5340 3.436700 AAAGGCAAGAACCGAACAAAG 57.563 42.857 0.00 0.00 33.69 2.77
5101 5354 4.525487 TCCGAAGAGACTAAACTAAAGGCA 59.475 41.667 0.00 0.00 0.00 4.75
5164 5417 3.435671 AGTGTACTCAATGTAAAAGGCGC 59.564 43.478 0.00 0.00 32.25 6.53
5226 5479 2.093341 AGGGATGGCATCATTTTTGCAC 60.093 45.455 27.39 7.80 41.95 4.57
5395 5648 6.268847 AGTGGTCTGAAGTCTGAACTCTAAAT 59.731 38.462 6.15 0.00 34.90 1.40
5429 5682 8.068733 AGAAGAGATACTACCCTTGAATACCTT 58.931 37.037 0.00 0.00 0.00 3.50
5431 5684 7.842887 AGAAGAGATACTACCCTTGAATACC 57.157 40.000 0.00 0.00 0.00 2.73
5460 5713 4.705023 GGCACCCTTCAAAATGTATACACT 59.295 41.667 7.96 0.00 0.00 3.55
5490 5743 2.872858 GGTCCGGCAAGACATATTTCTC 59.127 50.000 0.00 0.00 38.59 2.87
5499 5752 1.218316 CTAGGTGGTCCGGCAAGAC 59.782 63.158 0.00 0.00 39.05 3.01
5541 5795 1.386533 TCTCTTCGTATCGACACCCC 58.613 55.000 0.00 0.00 34.89 4.95
5571 5825 3.837731 GACCCATTTCCTCCAAATTCCAA 59.162 43.478 0.00 0.00 31.79 3.53
5572 5826 3.077391 AGACCCATTTCCTCCAAATTCCA 59.923 43.478 0.00 0.00 31.79 3.53
5577 5831 6.437162 CAGAAATAAGACCCATTTCCTCCAAA 59.563 38.462 4.61 0.00 41.35 3.28
5590 5844 9.039870 CACATGAGAAGTATCAGAAATAAGACC 57.960 37.037 0.00 0.00 31.44 3.85
5598 5852 4.532126 ACCACCACATGAGAAGTATCAGAA 59.468 41.667 0.00 0.00 31.44 3.02
5599 5853 4.096681 ACCACCACATGAGAAGTATCAGA 58.903 43.478 0.00 0.00 31.44 3.27
5600 5854 4.478206 ACCACCACATGAGAAGTATCAG 57.522 45.455 0.00 0.00 31.44 2.90
5601 5855 4.323485 GGAACCACCACATGAGAAGTATCA 60.323 45.833 0.00 0.00 38.79 2.15
5602 5856 4.192317 GGAACCACCACATGAGAAGTATC 58.808 47.826 0.00 0.00 38.79 2.24
5603 5857 3.587061 TGGAACCACCACATGAGAAGTAT 59.413 43.478 0.00 0.00 44.64 2.12
5604 5858 2.976185 TGGAACCACCACATGAGAAGTA 59.024 45.455 0.00 0.00 44.64 2.24
5605 5859 1.774254 TGGAACCACCACATGAGAAGT 59.226 47.619 0.00 0.00 44.64 3.01
5606 5860 2.430465 CTGGAACCACCACATGAGAAG 58.570 52.381 0.00 0.00 44.64 2.85
5608 5862 0.692476 CCTGGAACCACCACATGAGA 59.308 55.000 0.00 0.00 44.64 3.27
5609 5863 0.401738 ACCTGGAACCACCACATGAG 59.598 55.000 0.00 0.00 44.64 2.90
5610 5864 1.735926 TACCTGGAACCACCACATGA 58.264 50.000 0.00 0.00 44.64 3.07
5644 5905 3.192844 CCATCATGTTCAGCTGCTTTTCT 59.807 43.478 9.47 0.00 0.00 2.52
5728 5989 1.121407 AGTACTGGGTGCACAGCAGA 61.121 55.000 20.43 0.00 40.08 4.26
5740 6001 1.325476 GGTGGGACGGGTAGTACTGG 61.325 65.000 5.39 0.00 33.01 4.00
5842 6103 1.577922 CGACGAGACGGACTTTGGA 59.422 57.895 0.00 0.00 0.00 3.53
6021 6282 2.430704 CTTTGCCCAGGCTCTCCCAA 62.431 60.000 10.58 0.00 42.51 4.12
6067 6328 1.696965 CCCCTACCCTTACCCTAACCC 60.697 61.905 0.00 0.00 0.00 4.11
6070 6331 1.009923 CCACCCCTACCCTTACCCTAA 59.990 57.143 0.00 0.00 0.00 2.69
6120 6381 2.672874 TCAGCTCACGCAATACACAATC 59.327 45.455 0.00 0.00 39.10 2.67
6177 6438 7.581814 TCATCTCATCTCTTCTCCTCTCTTAA 58.418 38.462 0.00 0.00 0.00 1.85
6250 6524 4.513318 CCTGACAAAGAAGAGGAAAGACAC 59.487 45.833 0.00 0.00 0.00 3.67
6281 6555 8.976471 CAGAGCAGTAAGATACTAACAATCATG 58.024 37.037 0.00 0.00 37.23 3.07
6285 6559 9.155975 CAAACAGAGCAGTAAGATACTAACAAT 57.844 33.333 0.00 0.00 37.23 2.71
6287 6561 7.892609 TCAAACAGAGCAGTAAGATACTAACA 58.107 34.615 0.00 0.00 37.23 2.41
6292 6566 6.370166 AGCTTTCAAACAGAGCAGTAAGATAC 59.630 38.462 0.00 0.00 38.85 2.24
6293 6567 6.369890 CAGCTTTCAAACAGAGCAGTAAGATA 59.630 38.462 0.00 0.00 38.85 1.98
6294 6568 5.180868 CAGCTTTCAAACAGAGCAGTAAGAT 59.819 40.000 0.00 0.00 38.85 2.40
6339 6613 0.327924 TGTGTGGGATTCCAGCGATT 59.672 50.000 4.80 0.00 45.05 3.34
6340 6614 0.548031 ATGTGTGGGATTCCAGCGAT 59.452 50.000 4.80 0.00 45.05 4.58
6409 6686 5.684550 ACCATTCCGTCAGTTTTAGAAAC 57.315 39.130 0.00 0.00 0.00 2.78
6453 6730 2.305927 AGGCGAATCAGGAGGAAGAAAA 59.694 45.455 0.00 0.00 0.00 2.29
6465 6742 0.109179 GTGCATTGCAAGGCGAATCA 60.109 50.000 28.58 10.19 41.47 2.57
6467 6744 0.317799 TTGTGCATTGCAAGGCGAAT 59.682 45.000 28.58 0.00 41.47 3.34
6470 6747 0.318869 TCTTTGTGCATTGCAAGGCG 60.319 50.000 28.58 15.45 41.47 5.52
6487 6764 9.338622 AGTTTTACAAATAGTACAGCACTTTCT 57.661 29.630 0.00 0.00 38.80 2.52
6491 6768 8.373220 ACCTAGTTTTACAAATAGTACAGCACT 58.627 33.333 0.00 0.00 41.62 4.40
6502 6779 7.013834 TGGGGAAATCACCTAGTTTTACAAAT 58.986 34.615 2.91 0.00 41.04 2.32
6504 6781 5.771165 GTGGGGAAATCACCTAGTTTTACAA 59.229 40.000 2.91 0.00 41.04 2.41
6531 6808 6.454795 TCAATCTTTAAAATCCCACAGCAAC 58.545 36.000 0.00 0.00 0.00 4.17
6563 6840 8.398878 AGGTCATTTCATTCATTGCAATTTTT 57.601 26.923 9.83 0.00 0.00 1.94
6566 6843 9.675464 ATTTAGGTCATTTCATTCATTGCAATT 57.325 25.926 9.83 0.00 0.00 2.32
6567 6844 9.321562 GATTTAGGTCATTTCATTCATTGCAAT 57.678 29.630 5.99 5.99 0.00 3.56
6570 6847 8.706492 TTGATTTAGGTCATTTCATTCATTGC 57.294 30.769 0.00 0.00 0.00 3.56
6607 6884 4.769688 TCTTTGTGTCACACAGTTCTGAT 58.230 39.130 11.26 0.00 45.39 2.90
6608 6885 4.183865 CTCTTTGTGTCACACAGTTCTGA 58.816 43.478 11.26 5.64 45.39 3.27
6609 6886 3.935203 ACTCTTTGTGTCACACAGTTCTG 59.065 43.478 11.26 4.80 45.39 3.02
6610 6887 4.207891 ACTCTTTGTGTCACACAGTTCT 57.792 40.909 11.26 0.99 45.39 3.01
6611 6888 5.559035 GCATACTCTTTGTGTCACACAGTTC 60.559 44.000 11.26 5.08 45.39 3.01
6612 6889 4.273480 GCATACTCTTTGTGTCACACAGTT 59.727 41.667 11.26 9.26 45.39 3.16
6613 6890 3.809832 GCATACTCTTTGTGTCACACAGT 59.190 43.478 11.26 14.90 45.39 3.55
6614 6891 3.809279 TGCATACTCTTTGTGTCACACAG 59.191 43.478 11.26 12.15 45.39 3.66
6615 6892 3.802866 TGCATACTCTTTGTGTCACACA 58.197 40.909 6.50 6.50 43.02 3.72
6616 6893 4.214119 ACATGCATACTCTTTGTGTCACAC 59.786 41.667 4.80 0.00 34.56 3.82
6617 6894 4.388485 ACATGCATACTCTTTGTGTCACA 58.612 39.130 0.18 0.18 0.00 3.58
6618 6895 5.408299 TGTACATGCATACTCTTTGTGTCAC 59.592 40.000 0.00 0.00 0.00 3.67
6619 6896 5.546526 TGTACATGCATACTCTTTGTGTCA 58.453 37.500 0.00 0.00 0.00 3.58
6620 6897 6.480524 TTGTACATGCATACTCTTTGTGTC 57.519 37.500 0.00 0.00 0.00 3.67
6621 6898 6.127925 CCATTGTACATGCATACTCTTTGTGT 60.128 38.462 0.00 0.00 0.00 3.72
6622 6899 6.093909 TCCATTGTACATGCATACTCTTTGTG 59.906 38.462 0.00 0.00 0.00 3.33
6623 6900 6.094048 GTCCATTGTACATGCATACTCTTTGT 59.906 38.462 0.00 0.00 0.00 2.83
6624 6901 6.458751 GGTCCATTGTACATGCATACTCTTTG 60.459 42.308 0.00 0.00 0.00 2.77
6625 6902 5.590259 GGTCCATTGTACATGCATACTCTTT 59.410 40.000 0.00 0.00 0.00 2.52
6673 6954 8.954834 TCCATATCACCAAATAATGCCTAAAT 57.045 30.769 0.00 0.00 0.00 1.40
6674 6955 7.451255 CCTCCATATCACCAAATAATGCCTAAA 59.549 37.037 0.00 0.00 0.00 1.85
6675 6956 6.947733 CCTCCATATCACCAAATAATGCCTAA 59.052 38.462 0.00 0.00 0.00 2.69
6676 6957 6.484288 CCTCCATATCACCAAATAATGCCTA 58.516 40.000 0.00 0.00 0.00 3.93
6678 6959 4.463891 CCCTCCATATCACCAAATAATGCC 59.536 45.833 0.00 0.00 0.00 4.40
6679 6960 5.079643 ACCCTCCATATCACCAAATAATGC 58.920 41.667 0.00 0.00 0.00 3.56
6680 6961 6.517194 GCAACCCTCCATATCACCAAATAATG 60.517 42.308 0.00 0.00 0.00 1.90
6681 6962 5.539955 GCAACCCTCCATATCACCAAATAAT 59.460 40.000 0.00 0.00 0.00 1.28
6682 6963 4.892934 GCAACCCTCCATATCACCAAATAA 59.107 41.667 0.00 0.00 0.00 1.40
6684 6965 3.299503 GCAACCCTCCATATCACCAAAT 58.700 45.455 0.00 0.00 0.00 2.32
6686 6967 1.638070 TGCAACCCTCCATATCACCAA 59.362 47.619 0.00 0.00 0.00 3.67
6687 6968 1.294041 TGCAACCCTCCATATCACCA 58.706 50.000 0.00 0.00 0.00 4.17
6688 6969 2.233271 CATGCAACCCTCCATATCACC 58.767 52.381 0.00 0.00 0.00 4.02
6689 6970 2.880890 GACATGCAACCCTCCATATCAC 59.119 50.000 0.00 0.00 0.00 3.06
6690 6971 2.485302 CGACATGCAACCCTCCATATCA 60.485 50.000 0.00 0.00 0.00 2.15
6691 6972 2.146342 CGACATGCAACCCTCCATATC 58.854 52.381 0.00 0.00 0.00 1.63
6693 6974 1.138859 CTCGACATGCAACCCTCCATA 59.861 52.381 0.00 0.00 0.00 2.74
6696 6977 0.460987 CTCTCGACATGCAACCCTCC 60.461 60.000 0.00 0.00 0.00 4.30
6697 6978 0.532573 TCTCTCGACATGCAACCCTC 59.467 55.000 0.00 0.00 0.00 4.30
6698 6979 0.976641 TTCTCTCGACATGCAACCCT 59.023 50.000 0.00 0.00 0.00 4.34
6699 6980 2.029838 ATTCTCTCGACATGCAACCC 57.970 50.000 0.00 0.00 0.00 4.11
6710 7006 3.372954 CCCACTAACGCTAATTCTCTCG 58.627 50.000 0.00 0.00 0.00 4.04
6758 7054 9.061435 GGCAAGCTATGATAGAAAATTCTACTT 57.939 33.333 3.13 1.47 42.13 2.24
6764 7060 7.217200 TCTACGGCAAGCTATGATAGAAAATT 58.783 34.615 3.13 0.00 0.00 1.82
6785 7081 7.881751 ACCATTGAAACCCTTAACTAGTTCTAC 59.118 37.037 12.39 0.00 0.00 2.59
6786 7082 7.881232 CACCATTGAAACCCTTAACTAGTTCTA 59.119 37.037 12.39 0.64 0.00 2.10
6788 7084 6.489022 ACACCATTGAAACCCTTAACTAGTTC 59.511 38.462 12.39 0.00 0.00 3.01
6791 7087 7.989416 TTACACCATTGAAACCCTTAACTAG 57.011 36.000 0.00 0.00 0.00 2.57
6799 7095 6.819146 TGAAAACTTTTACACCATTGAAACCC 59.181 34.615 0.00 0.00 0.00 4.11
6821 7117 7.118496 TCAGCACCTTTTTAGGATTTTTGAA 57.882 32.000 0.00 0.00 0.00 2.69
6822 7118 6.723298 TCAGCACCTTTTTAGGATTTTTGA 57.277 33.333 0.00 0.00 0.00 2.69
6823 7119 7.279758 TGTTTCAGCACCTTTTTAGGATTTTTG 59.720 33.333 0.00 0.00 0.00 2.44
6828 7124 5.362430 TGTTGTTTCAGCACCTTTTTAGGAT 59.638 36.000 0.00 0.00 0.00 3.24
6829 7125 4.707448 TGTTGTTTCAGCACCTTTTTAGGA 59.293 37.500 0.00 0.00 0.00 2.94
6831 7127 5.949233 GTGTTGTTTCAGCACCTTTTTAG 57.051 39.130 5.64 0.00 39.16 1.85
6839 7135 1.975660 TAGGGGTGTTGTTTCAGCAC 58.024 50.000 7.91 7.91 43.17 4.40
6841 7137 8.565416 GTTATATTATAGGGGTGTTGTTTCAGC 58.435 37.037 0.00 0.00 35.43 4.26
6858 7154 9.203421 TCGCTTCGTTTGATCATGTTATATTAT 57.797 29.630 0.00 0.00 0.00 1.28
6862 7158 6.129194 CGATCGCTTCGTTTGATCATGTTATA 60.129 38.462 0.26 0.00 43.01 0.98
6894 7192 8.597662 TTTGTCTAGGACACATAAAGTTGTAC 57.402 34.615 0.00 0.00 42.60 2.90
6899 7197 8.974060 TTTTCTTTGTCTAGGACACATAAAGT 57.026 30.769 0.00 0.00 42.60 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.