Multiple sequence alignment - TraesCS3B01G106000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G106000 chr3B 100.000 2978 0 0 1 2978 71805968 71802991 0.000000e+00 5500.0
1 TraesCS3B01G106000 chr3B 90.943 530 34 8 2457 2978 72111320 72111843 0.000000e+00 701.0
2 TraesCS3B01G106000 chr3B 90.187 214 13 3 2318 2526 71974979 71975189 3.780000e-69 272.0
3 TraesCS3B01G106000 chr3B 92.308 117 6 2 2863 2978 71975763 71975877 2.380000e-36 163.0
4 TraesCS3B01G106000 chr3B 85.714 112 6 8 2039 2146 71974685 71974790 3.140000e-20 110.0
5 TraesCS3B01G106000 chr3B 95.161 62 3 0 2917 2978 71968139 71968200 6.790000e-17 99.0
6 TraesCS3B01G106000 chr3D 91.333 600 34 11 2389 2978 46198307 46198898 0.000000e+00 804.0
7 TraesCS3B01G106000 chr3D 82.431 831 50 48 386 1179 46196384 46197155 3.240000e-179 638.0
8 TraesCS3B01G106000 chr3D 85.443 474 36 13 1366 1817 46197345 46197807 2.090000e-126 462.0
9 TraesCS3B01G106000 chr3D 90.210 143 8 3 1195 1335 46197216 46197354 6.560000e-42 182.0
10 TraesCS3B01G106000 chr3D 78.155 206 27 10 1996 2195 46197980 46198173 6.750000e-22 115.0
11 TraesCS3B01G106000 chr3D 94.231 52 3 0 2286 2337 46198242 46198293 2.460000e-11 80.5
12 TraesCS3B01G106000 chr3A 89.542 612 33 14 2381 2978 57813798 57814392 0.000000e+00 747.0
13 TraesCS3B01G106000 chr3A 83.806 741 50 25 345 1050 57811863 57812568 9.000000e-180 640.0
14 TraesCS3B01G106000 chr3A 80.138 871 78 52 1366 2195 57812861 57813677 2.000000e-156 562.0
15 TraesCS3B01G106000 chr3A 86.905 336 42 2 1 334 330702432 330702097 2.800000e-100 375.0
16 TraesCS3B01G106000 chr3A 86.136 339 44 3 1 337 15557870 15557533 2.180000e-96 363.0
17 TraesCS3B01G106000 chr3A 85.882 340 44 4 1 338 466513443 466513106 2.820000e-95 359.0
18 TraesCS3B01G106000 chr3A 84.795 342 47 4 1 338 734516086 734516426 3.680000e-89 339.0
19 TraesCS3B01G106000 chr3A 86.713 143 11 6 1195 1335 57812734 57812870 5.140000e-33 152.0
20 TraesCS3B01G106000 chr3A 82.828 99 8 7 1070 1166 57812568 57812659 2.460000e-11 80.5
21 TraesCS3B01G106000 chr2D 91.900 321 24 2 20 338 88264649 88264329 5.860000e-122 448.0
22 TraesCS3B01G106000 chr5D 87.536 345 37 3 2 340 549651951 549652295 7.740000e-106 394.0
23 TraesCS3B01G106000 chr1B 87.611 339 40 2 1 337 593562236 593561898 2.780000e-105 392.0
24 TraesCS3B01G106000 chr7B 84.840 343 49 3 6 345 242912240 242912582 2.840000e-90 342.0
25 TraesCS3B01G106000 chr1A 84.866 337 48 3 1 334 455604773 455604437 1.320000e-88 337.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G106000 chr3B 71802991 71805968 2977 True 5500.00 5500 100.000000 1 2978 1 chr3B.!!$R1 2977
1 TraesCS3B01G106000 chr3B 72111320 72111843 523 False 701.00 701 90.943000 2457 2978 1 chr3B.!!$F2 521
2 TraesCS3B01G106000 chr3D 46196384 46198898 2514 False 380.25 804 86.967167 386 2978 6 chr3D.!!$F1 2592
3 TraesCS3B01G106000 chr3A 57811863 57814392 2529 False 436.30 747 84.605400 345 2978 5 chr3A.!!$F2 2633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 236 0.034476 GGCTGTTATACCCTACCGCC 59.966 60.0 0.0 0.0 37.46 6.13 F
254 255 0.107897 CATACAACCTGGCGGTAGCA 60.108 55.0 0.0 0.0 44.73 3.49 F
1360 1480 0.036732 CTAGCTTCCTGCAACCACCA 59.963 55.0 0.0 0.0 45.94 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 1461 0.036732 TGGTGGTTGCAGGAAGCTAG 59.963 55.0 5.39 0.0 45.94 3.42 R
1392 1512 0.109272 GATCTTGACGCACCTGACGA 60.109 55.0 0.00 0.0 0.00 4.20 R
2347 2571 0.032130 TACCGCGAGATGAAGATGCC 59.968 55.0 8.23 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.994699 CCAGGGTTCATGGCGGTA 59.005 61.111 0.00 0.00 0.00 4.02
29 30 1.153168 CCAGGGTTCATGGCGGTAG 60.153 63.158 0.00 0.00 0.00 3.18
30 31 1.153168 CAGGGTTCATGGCGGTAGG 60.153 63.158 0.00 0.00 0.00 3.18
31 32 2.192175 GGGTTCATGGCGGTAGGG 59.808 66.667 0.00 0.00 0.00 3.53
32 33 2.676265 GGGTTCATGGCGGTAGGGT 61.676 63.158 0.00 0.00 0.00 4.34
33 34 1.451387 GGTTCATGGCGGTAGGGTG 60.451 63.158 0.00 0.00 0.00 4.61
34 35 2.112815 GTTCATGGCGGTAGGGTGC 61.113 63.158 0.00 0.00 0.00 5.01
35 36 2.597818 TTCATGGCGGTAGGGTGCA 61.598 57.895 0.00 0.00 0.00 4.57
36 37 2.045438 CATGGCGGTAGGGTGCAA 60.045 61.111 0.00 0.00 0.00 4.08
37 38 2.045340 ATGGCGGTAGGGTGCAAC 60.045 61.111 0.00 0.00 0.00 4.17
38 39 2.901281 ATGGCGGTAGGGTGCAACA 61.901 57.895 3.06 0.00 39.98 3.33
39 40 2.746277 GGCGGTAGGGTGCAACAG 60.746 66.667 3.06 0.00 39.98 3.16
40 41 3.431725 GCGGTAGGGTGCAACAGC 61.432 66.667 3.06 0.00 39.98 4.40
47 48 2.032071 GGTGCAACAGCCTACCGT 59.968 61.111 0.00 0.00 39.98 4.83
48 49 2.033194 GGTGCAACAGCCTACCGTC 61.033 63.158 0.00 0.00 39.98 4.79
49 50 1.301401 GTGCAACAGCCTACCGTCA 60.301 57.895 0.00 0.00 36.32 4.35
50 51 1.005037 TGCAACAGCCTACCGTCAG 60.005 57.895 0.00 0.00 0.00 3.51
51 52 1.741770 GCAACAGCCTACCGTCAGG 60.742 63.158 0.00 0.00 45.13 3.86
52 53 1.972198 CAACAGCCTACCGTCAGGA 59.028 57.895 3.80 0.00 41.02 3.86
53 54 0.320374 CAACAGCCTACCGTCAGGAA 59.680 55.000 3.80 0.00 41.02 3.36
54 55 0.320697 AACAGCCTACCGTCAGGAAC 59.679 55.000 3.80 0.00 41.02 3.62
55 56 1.218316 CAGCCTACCGTCAGGAACC 59.782 63.158 3.80 0.00 41.02 3.62
56 57 1.078710 AGCCTACCGTCAGGAACCT 59.921 57.895 3.80 0.00 41.02 3.50
57 58 0.544595 AGCCTACCGTCAGGAACCTT 60.545 55.000 3.80 0.00 41.02 3.50
58 59 0.391263 GCCTACCGTCAGGAACCTTG 60.391 60.000 3.80 0.00 41.02 3.61
59 60 0.249398 CCTACCGTCAGGAACCTTGG 59.751 60.000 0.00 0.00 41.02 3.61
60 61 0.391263 CTACCGTCAGGAACCTTGGC 60.391 60.000 0.00 0.00 41.02 4.52
61 62 2.162338 TACCGTCAGGAACCTTGGCG 62.162 60.000 9.17 9.17 41.02 5.69
62 63 2.742372 CGTCAGGAACCTTGGCGG 60.742 66.667 8.55 0.00 39.35 6.13
71 72 2.147695 ACCTTGGCGGTAGGAAACA 58.852 52.632 7.07 0.00 46.73 2.83
72 73 0.696501 ACCTTGGCGGTAGGAAACAT 59.303 50.000 7.07 0.00 46.73 2.71
73 74 1.339727 ACCTTGGCGGTAGGAAACATC 60.340 52.381 7.07 0.00 46.73 3.06
74 75 1.379527 CTTGGCGGTAGGAAACATCC 58.620 55.000 0.00 0.00 0.00 3.51
75 76 0.034863 TTGGCGGTAGGAAACATCCC 60.035 55.000 0.00 0.00 0.00 3.85
76 77 0.912487 TGGCGGTAGGAAACATCCCT 60.912 55.000 0.00 0.00 37.80 4.20
77 78 1.125633 GGCGGTAGGAAACATCCCTA 58.874 55.000 0.00 0.00 35.30 3.53
78 79 1.697982 GGCGGTAGGAAACATCCCTAT 59.302 52.381 0.00 0.00 38.43 2.57
79 80 2.289506 GGCGGTAGGAAACATCCCTATC 60.290 54.545 0.00 0.00 38.43 2.08
82 83 4.254402 GGTAGGAAACATCCCTATCGTC 57.746 50.000 0.00 0.00 38.43 4.20
83 84 3.640029 GGTAGGAAACATCCCTATCGTCA 59.360 47.826 0.00 0.00 38.43 4.35
84 85 4.100498 GGTAGGAAACATCCCTATCGTCAA 59.900 45.833 0.00 0.00 38.43 3.18
85 86 4.837093 AGGAAACATCCCTATCGTCAAA 57.163 40.909 0.00 0.00 30.92 2.69
86 87 4.514401 AGGAAACATCCCTATCGTCAAAC 58.486 43.478 0.00 0.00 30.92 2.93
87 88 4.019681 AGGAAACATCCCTATCGTCAAACA 60.020 41.667 0.00 0.00 30.92 2.83
88 89 4.332819 GGAAACATCCCTATCGTCAAACAG 59.667 45.833 0.00 0.00 0.00 3.16
89 90 4.819105 AACATCCCTATCGTCAAACAGA 57.181 40.909 0.00 0.00 0.00 3.41
90 91 4.124851 ACATCCCTATCGTCAAACAGAC 57.875 45.455 0.00 0.00 44.02 3.51
91 92 3.769844 ACATCCCTATCGTCAAACAGACT 59.230 43.478 0.00 0.00 45.32 3.24
92 93 3.868757 TCCCTATCGTCAAACAGACTG 57.131 47.619 0.00 0.00 45.32 3.51
93 94 2.496070 TCCCTATCGTCAAACAGACTGG 59.504 50.000 7.51 0.00 45.32 4.00
94 95 2.418746 CCCTATCGTCAAACAGACTGGG 60.419 54.545 7.51 0.00 45.32 4.45
95 96 2.418746 CCTATCGTCAAACAGACTGGGG 60.419 54.545 7.51 0.00 45.32 4.96
96 97 1.056660 ATCGTCAAACAGACTGGGGT 58.943 50.000 7.51 0.00 45.32 4.95
97 98 1.707106 TCGTCAAACAGACTGGGGTA 58.293 50.000 7.51 0.00 45.32 3.69
98 99 1.616865 TCGTCAAACAGACTGGGGTAG 59.383 52.381 7.51 0.00 45.32 3.18
99 100 1.809684 GTCAAACAGACTGGGGTAGC 58.190 55.000 7.51 0.00 44.09 3.58
100 101 0.690762 TCAAACAGACTGGGGTAGCC 59.309 55.000 7.51 1.07 0.00 3.93
101 102 0.693049 CAAACAGACTGGGGTAGCCT 59.307 55.000 11.48 0.00 0.00 4.58
102 103 0.693049 AAACAGACTGGGGTAGCCTG 59.307 55.000 11.48 6.93 0.00 4.85
103 104 0.473886 AACAGACTGGGGTAGCCTGT 60.474 55.000 11.48 10.20 0.00 4.00
104 105 0.412244 ACAGACTGGGGTAGCCTGTA 59.588 55.000 11.48 0.00 0.00 2.74
105 106 0.824759 CAGACTGGGGTAGCCTGTAC 59.175 60.000 11.48 1.11 0.00 2.90
106 107 0.412244 AGACTGGGGTAGCCTGTACA 59.588 55.000 11.48 0.00 0.00 2.90
107 108 1.203262 AGACTGGGGTAGCCTGTACAA 60.203 52.381 11.48 0.00 0.00 2.41
108 109 0.981943 ACTGGGGTAGCCTGTACAAC 59.018 55.000 11.48 0.00 0.00 3.32
109 110 0.252197 CTGGGGTAGCCTGTACAACC 59.748 60.000 11.48 5.97 0.00 3.77
111 112 2.692960 GGGTAGCCTGTACAACCCT 58.307 57.895 21.58 9.72 46.80 4.34
112 113 1.870064 GGGTAGCCTGTACAACCCTA 58.130 55.000 21.58 8.87 46.80 3.53
113 114 1.483827 GGGTAGCCTGTACAACCCTAC 59.516 57.143 21.58 17.62 46.80 3.18
114 115 1.483827 GGTAGCCTGTACAACCCTACC 59.516 57.143 21.10 21.10 40.66 3.18
115 116 1.135721 GTAGCCTGTACAACCCTACCG 59.864 57.143 12.70 0.00 0.00 4.02
116 117 0.543646 AGCCTGTACAACCCTACCGT 60.544 55.000 0.00 0.00 0.00 4.83
117 118 0.108472 GCCTGTACAACCCTACCGTC 60.108 60.000 0.00 0.00 0.00 4.79
118 119 1.259609 CCTGTACAACCCTACCGTCA 58.740 55.000 0.00 0.00 0.00 4.35
119 120 1.619827 CCTGTACAACCCTACCGTCAA 59.380 52.381 0.00 0.00 0.00 3.18
120 121 2.353406 CCTGTACAACCCTACCGTCAAG 60.353 54.545 0.00 0.00 0.00 3.02
131 132 4.717629 CGTCAAGGTGCTCGGCGA 62.718 66.667 10.14 10.14 0.00 5.54
132 133 2.125512 GTCAAGGTGCTCGGCGAT 60.126 61.111 11.27 0.00 0.00 4.58
133 134 1.141019 GTCAAGGTGCTCGGCGATA 59.859 57.895 11.27 0.00 0.00 2.92
134 135 0.872021 GTCAAGGTGCTCGGCGATAG 60.872 60.000 11.27 0.00 0.00 2.08
135 136 1.592669 CAAGGTGCTCGGCGATAGG 60.593 63.158 11.27 0.00 0.00 2.57
145 146 2.202743 GCGATAGGCACGAGCACA 60.203 61.111 7.26 0.00 44.61 4.57
146 147 2.517450 GCGATAGGCACGAGCACAC 61.517 63.158 7.26 0.00 44.61 3.82
147 148 1.153842 CGATAGGCACGAGCACACA 60.154 57.895 7.26 0.00 44.61 3.72
148 149 1.413767 CGATAGGCACGAGCACACAC 61.414 60.000 7.26 0.00 44.61 3.82
149 150 0.108615 GATAGGCACGAGCACACACT 60.109 55.000 7.26 0.00 44.61 3.55
150 151 0.390340 ATAGGCACGAGCACACACTG 60.390 55.000 7.26 0.00 44.61 3.66
151 152 1.744320 TAGGCACGAGCACACACTGT 61.744 55.000 7.26 0.00 44.61 3.55
174 175 7.914537 GTGTTCAACACTTAGAAGGAATTTG 57.085 36.000 13.77 0.00 45.27 2.32
175 176 7.480810 GTGTTCAACACTTAGAAGGAATTTGT 58.519 34.615 13.77 0.00 45.27 2.83
176 177 7.432252 GTGTTCAACACTTAGAAGGAATTTGTG 59.568 37.037 13.77 0.00 45.27 3.33
177 178 6.633500 TCAACACTTAGAAGGAATTTGTGG 57.367 37.500 0.00 0.00 0.00 4.17
178 179 6.126409 TCAACACTTAGAAGGAATTTGTGGT 58.874 36.000 0.00 0.00 0.00 4.16
179 180 7.284074 TCAACACTTAGAAGGAATTTGTGGTA 58.716 34.615 0.00 0.00 0.00 3.25
180 181 7.444183 TCAACACTTAGAAGGAATTTGTGGTAG 59.556 37.037 0.00 0.00 0.00 3.18
181 182 6.238648 ACACTTAGAAGGAATTTGTGGTAGG 58.761 40.000 0.00 0.00 0.00 3.18
182 183 5.123979 CACTTAGAAGGAATTTGTGGTAGGC 59.876 44.000 0.00 0.00 0.00 3.93
183 184 3.087370 AGAAGGAATTTGTGGTAGGCC 57.913 47.619 0.00 0.00 0.00 5.19
184 185 2.378547 AGAAGGAATTTGTGGTAGGCCA 59.621 45.455 5.01 0.00 43.73 5.36
192 193 2.358619 TGGTAGGCCATGCAACCC 59.641 61.111 5.01 0.00 40.46 4.11
193 194 2.237965 TGGTAGGCCATGCAACCCT 61.238 57.895 5.01 8.07 40.46 4.34
194 195 0.916845 TGGTAGGCCATGCAACCCTA 60.917 55.000 5.01 6.35 40.46 3.53
195 196 0.465642 GGTAGGCCATGCAACCCTAC 60.466 60.000 22.73 22.73 46.60 3.18
196 197 0.465642 GTAGGCCATGCAACCCTACC 60.466 60.000 21.29 6.53 43.31 3.18
197 198 1.978455 TAGGCCATGCAACCCTACCG 61.978 60.000 5.01 0.00 0.00 4.02
198 199 3.518068 GCCATGCAACCCTACCGC 61.518 66.667 0.00 0.00 0.00 5.68
199 200 2.828549 CCATGCAACCCTACCGCC 60.829 66.667 0.00 0.00 0.00 6.13
200 201 2.045438 CATGCAACCCTACCGCCA 60.045 61.111 0.00 0.00 0.00 5.69
201 202 2.114670 CATGCAACCCTACCGCCAG 61.115 63.158 0.00 0.00 0.00 4.85
202 203 3.344137 ATGCAACCCTACCGCCAGG 62.344 63.158 0.00 0.00 45.13 4.45
208 209 2.687566 CCTACCGCCAGGGACCTT 60.688 66.667 0.00 0.00 43.47 3.50
209 210 2.584608 CTACCGCCAGGGACCTTG 59.415 66.667 0.00 0.00 43.47 3.61
210 211 1.987855 CTACCGCCAGGGACCTTGA 60.988 63.158 4.91 0.00 43.47 3.02
211 212 2.240162 CTACCGCCAGGGACCTTGAC 62.240 65.000 4.91 0.00 43.47 3.18
212 213 4.760047 CCGCCAGGGACCTTGACG 62.760 72.222 4.91 5.11 38.47 4.35
213 214 4.760047 CGCCAGGGACCTTGACGG 62.760 72.222 4.91 0.00 39.35 4.79
221 222 4.210158 ACCTTGACGGTAGGCTGT 57.790 55.556 0.00 0.00 46.73 4.40
222 223 2.448749 ACCTTGACGGTAGGCTGTT 58.551 52.632 0.00 0.00 46.73 3.16
223 224 1.636148 ACCTTGACGGTAGGCTGTTA 58.364 50.000 0.00 0.00 46.73 2.41
224 225 2.185387 ACCTTGACGGTAGGCTGTTAT 58.815 47.619 0.00 0.00 46.73 1.89
225 226 3.368248 ACCTTGACGGTAGGCTGTTATA 58.632 45.455 0.00 0.00 46.73 0.98
226 227 3.131755 ACCTTGACGGTAGGCTGTTATAC 59.868 47.826 0.00 0.00 46.73 1.47
227 228 3.492137 CCTTGACGGTAGGCTGTTATACC 60.492 52.174 0.00 0.00 38.47 2.73
228 229 2.034124 TGACGGTAGGCTGTTATACCC 58.966 52.381 0.00 0.00 38.60 3.69
229 230 2.314246 GACGGTAGGCTGTTATACCCT 58.686 52.381 0.00 0.00 38.60 4.34
230 231 3.117550 TGACGGTAGGCTGTTATACCCTA 60.118 47.826 0.00 0.00 38.60 3.53
231 232 3.225940 ACGGTAGGCTGTTATACCCTAC 58.774 50.000 0.00 7.39 46.60 3.18
233 234 3.930634 GTAGGCTGTTATACCCTACCG 57.069 52.381 0.00 0.00 43.31 4.02
234 235 1.046204 AGGCTGTTATACCCTACCGC 58.954 55.000 0.00 0.00 0.00 5.68
235 236 0.034476 GGCTGTTATACCCTACCGCC 59.966 60.000 0.00 0.00 37.46 6.13
236 237 0.754472 GCTGTTATACCCTACCGCCA 59.246 55.000 0.00 0.00 0.00 5.69
237 238 1.346722 GCTGTTATACCCTACCGCCAT 59.653 52.381 0.00 0.00 0.00 4.40
238 239 2.564062 GCTGTTATACCCTACCGCCATA 59.436 50.000 0.00 0.00 0.00 2.74
239 240 3.615834 GCTGTTATACCCTACCGCCATAC 60.616 52.174 0.00 0.00 0.00 2.39
240 241 3.574749 TGTTATACCCTACCGCCATACA 58.425 45.455 0.00 0.00 0.00 2.29
241 242 3.966006 TGTTATACCCTACCGCCATACAA 59.034 43.478 0.00 0.00 0.00 2.41
242 243 4.202243 TGTTATACCCTACCGCCATACAAC 60.202 45.833 0.00 0.00 0.00 3.32
243 244 1.122227 TACCCTACCGCCATACAACC 58.878 55.000 0.00 0.00 0.00 3.77
244 245 0.619543 ACCCTACCGCCATACAACCT 60.620 55.000 0.00 0.00 0.00 3.50
245 246 0.179056 CCCTACCGCCATACAACCTG 60.179 60.000 0.00 0.00 0.00 4.00
246 247 0.179056 CCTACCGCCATACAACCTGG 60.179 60.000 0.00 0.00 36.81 4.45
252 253 3.379650 CCATACAACCTGGCGGTAG 57.620 57.895 0.00 0.00 44.73 3.18
253 254 0.814010 CCATACAACCTGGCGGTAGC 60.814 60.000 0.00 0.00 44.73 3.58
254 255 0.107897 CATACAACCTGGCGGTAGCA 60.108 55.000 0.00 0.00 44.73 3.49
255 256 0.616371 ATACAACCTGGCGGTAGCAA 59.384 50.000 0.00 0.00 44.73 3.91
256 257 0.397187 TACAACCTGGCGGTAGCAAA 59.603 50.000 0.00 0.00 44.73 3.68
257 258 0.466555 ACAACCTGGCGGTAGCAAAA 60.467 50.000 0.00 0.00 44.73 2.44
258 259 0.887933 CAACCTGGCGGTAGCAAAAT 59.112 50.000 0.00 0.00 44.73 1.82
259 260 0.887933 AACCTGGCGGTAGCAAAATG 59.112 50.000 0.00 0.00 44.73 2.32
260 261 2.497349 AACCTGGCGGTAGCAAAATGG 61.497 52.381 0.00 0.00 44.73 3.16
267 268 3.888934 GCGGTAGCAAAATGGTCATATG 58.111 45.455 0.00 0.00 44.35 1.78
268 269 3.315191 GCGGTAGCAAAATGGTCATATGT 59.685 43.478 1.90 0.00 44.35 2.29
269 270 4.202010 GCGGTAGCAAAATGGTCATATGTT 60.202 41.667 1.90 0.00 44.35 2.71
270 271 5.273170 CGGTAGCAAAATGGTCATATGTTG 58.727 41.667 1.90 0.03 0.00 3.33
271 272 5.043248 GGTAGCAAAATGGTCATATGTTGC 58.957 41.667 15.13 15.13 41.23 4.17
272 273 4.804868 AGCAAAATGGTCATATGTTGCA 57.195 36.364 21.51 0.00 42.90 4.08
273 274 5.149973 AGCAAAATGGTCATATGTTGCAA 57.850 34.783 21.51 0.00 42.90 4.08
274 275 5.736813 AGCAAAATGGTCATATGTTGCAAT 58.263 33.333 21.51 6.04 42.90 3.56
275 276 6.174760 AGCAAAATGGTCATATGTTGCAATT 58.825 32.000 21.51 9.22 42.90 2.32
276 277 6.655848 AGCAAAATGGTCATATGTTGCAATTT 59.344 30.769 21.51 13.20 42.90 1.82
277 278 7.175293 AGCAAAATGGTCATATGTTGCAATTTT 59.825 29.630 21.51 16.71 42.90 1.82
278 279 7.808856 GCAAAATGGTCATATGTTGCAATTTTT 59.191 29.630 17.06 7.61 40.74 1.94
298 299 5.434352 TTTTCAGACTAGGGTCGATATCG 57.566 43.478 19.14 19.14 46.29 2.92
299 300 4.347360 TTCAGACTAGGGTCGATATCGA 57.653 45.455 23.48 23.48 46.29 3.59
316 317 9.472361 TCGATATCGAATAGGTTTTAGAAAAGG 57.528 33.333 24.92 0.00 46.30 3.11
317 318 8.709646 CGATATCGAATAGGTTTTAGAAAAGGG 58.290 37.037 20.50 0.00 43.02 3.95
318 319 9.557061 GATATCGAATAGGTTTTAGAAAAGGGT 57.443 33.333 0.00 0.00 0.00 4.34
319 320 7.860918 ATCGAATAGGTTTTAGAAAAGGGTC 57.139 36.000 0.00 0.00 0.00 4.46
320 321 6.771573 TCGAATAGGTTTTAGAAAAGGGTCA 58.228 36.000 0.00 0.00 0.00 4.02
321 322 7.225725 TCGAATAGGTTTTAGAAAAGGGTCAA 58.774 34.615 0.00 0.00 0.00 3.18
322 323 7.720515 TCGAATAGGTTTTAGAAAAGGGTCAAA 59.279 33.333 0.00 0.00 0.00 2.69
323 324 8.354426 CGAATAGGTTTTAGAAAAGGGTCAAAA 58.646 33.333 0.00 0.00 0.00 2.44
324 325 9.472361 GAATAGGTTTTAGAAAAGGGTCAAAAC 57.528 33.333 0.00 0.00 38.01 2.43
325 326 6.860790 AGGTTTTAGAAAAGGGTCAAAACA 57.139 33.333 9.60 0.00 39.62 2.83
326 327 6.636705 AGGTTTTAGAAAAGGGTCAAAACAC 58.363 36.000 9.60 1.55 39.62 3.32
327 328 5.517411 GGTTTTAGAAAAGGGTCAAAACACG 59.483 40.000 9.60 0.00 39.62 4.49
328 329 6.324042 GTTTTAGAAAAGGGTCAAAACACGA 58.676 36.000 0.00 0.00 38.40 4.35
329 330 6.512342 TTTAGAAAAGGGTCAAAACACGAA 57.488 33.333 0.00 0.00 32.44 3.85
330 331 6.512342 TTAGAAAAGGGTCAAAACACGAAA 57.488 33.333 0.00 0.00 32.44 3.46
331 332 5.592104 AGAAAAGGGTCAAAACACGAAAT 57.408 34.783 0.00 0.00 32.44 2.17
332 333 5.972935 AGAAAAGGGTCAAAACACGAAATT 58.027 33.333 0.00 0.00 32.44 1.82
333 334 6.403049 AGAAAAGGGTCAAAACACGAAATTT 58.597 32.000 0.00 0.00 32.44 1.82
334 335 6.876789 AGAAAAGGGTCAAAACACGAAATTTT 59.123 30.769 0.00 0.00 32.44 1.82
335 336 6.415798 AAAGGGTCAAAACACGAAATTTTG 57.584 33.333 3.73 3.73 44.74 2.44
336 337 3.868661 AGGGTCAAAACACGAAATTTTGC 59.131 39.130 5.27 11.02 43.62 3.68
337 338 3.001838 GGGTCAAAACACGAAATTTTGCC 59.998 43.478 5.27 16.17 43.62 4.52
338 339 3.868661 GGTCAAAACACGAAATTTTGCCT 59.131 39.130 5.27 0.00 43.62 4.75
339 340 4.026062 GGTCAAAACACGAAATTTTGCCTC 60.026 41.667 5.27 9.52 43.62 4.70
340 341 4.564769 GTCAAAACACGAAATTTTGCCTCA 59.435 37.500 5.27 1.15 43.62 3.86
341 342 4.803088 TCAAAACACGAAATTTTGCCTCAG 59.197 37.500 5.27 0.00 43.62 3.35
342 343 3.369546 AACACGAAATTTTGCCTCAGG 57.630 42.857 5.27 0.00 0.00 3.86
343 344 2.582052 ACACGAAATTTTGCCTCAGGA 58.418 42.857 5.27 0.00 0.00 3.86
359 360 4.057428 GACGGAGCGGCTGTGAGT 62.057 66.667 7.50 1.16 35.85 3.41
369 370 1.202582 CGGCTGTGAGTAAGCAGTACT 59.797 52.381 0.02 0.02 46.23 2.73
408 420 0.169009 GTAGCAGGCGGAAAAGCTTG 59.831 55.000 0.00 0.00 45.47 4.01
588 629 0.248866 ATCGTGTCGCATGTATCGCA 60.249 50.000 0.00 0.00 0.00 5.10
693 743 4.363990 ACCTCACCTGAGCGTGCG 62.364 66.667 0.00 0.00 40.75 5.34
706 756 4.994201 GTGCGTGCGTGAGACGGA 62.994 66.667 0.00 0.00 42.82 4.69
739 789 3.149648 GCCAGGGCGGATGCAATT 61.150 61.111 0.00 0.00 45.35 2.32
740 790 2.809706 CCAGGGCGGATGCAATTG 59.190 61.111 0.00 0.00 45.35 2.32
741 791 2.053865 CCAGGGCGGATGCAATTGT 61.054 57.895 7.40 0.00 45.35 2.71
786 836 2.892425 CGACTGATTGGCCCGAGC 60.892 66.667 0.00 0.00 38.76 5.03
787 837 2.892425 GACTGATTGGCCCGAGCG 60.892 66.667 0.00 0.00 41.24 5.03
958 1010 2.509336 CGCGCTCCGGTCTCATTT 60.509 61.111 5.56 0.00 0.00 2.32
959 1011 2.517450 CGCGCTCCGGTCTCATTTC 61.517 63.158 5.56 0.00 0.00 2.17
960 1012 1.447838 GCGCTCCGGTCTCATTTCA 60.448 57.895 0.00 0.00 0.00 2.69
1102 1168 1.370051 CATGGATCATTGCGCTGCG 60.370 57.895 19.17 19.17 0.00 5.18
1122 1188 4.473520 CACCACCCTAGCCCGCTG 62.474 72.222 0.00 0.00 0.00 5.18
1133 1199 2.971413 CCCGCTGCTGCTGCTATC 60.971 66.667 25.43 4.90 40.48 2.08
1134 1200 2.202974 CCGCTGCTGCTGCTATCA 60.203 61.111 25.43 0.00 40.48 2.15
1136 1202 1.371337 CCGCTGCTGCTGCTATCAAA 61.371 55.000 25.43 0.00 40.48 2.69
1157 1223 2.644555 ATCCTACACGCCACGCCATC 62.645 60.000 0.00 0.00 0.00 3.51
1191 1265 4.874977 GCACCGCTACTCTCCGCC 62.875 72.222 0.00 0.00 0.00 6.13
1241 1360 1.710339 GTCAAACGCAGCCTCGATC 59.290 57.895 2.06 0.00 0.00 3.69
1262 1381 2.108970 ACCACCGTTATCTCCTCTTCC 58.891 52.381 0.00 0.00 0.00 3.46
1297 1416 1.516386 CCCGTCCATCACTCGTTCG 60.516 63.158 0.00 0.00 0.00 3.95
1298 1417 2.158959 CCGTCCATCACTCGTTCGC 61.159 63.158 0.00 0.00 0.00 4.70
1326 1446 2.127297 AGCTAGCCCCCTTTCCCA 59.873 61.111 12.13 0.00 0.00 4.37
1327 1447 2.003548 AGCTAGCCCCCTTTCCCAG 61.004 63.158 12.13 0.00 0.00 4.45
1328 1448 3.061905 GCTAGCCCCCTTTCCCAGG 62.062 68.421 2.29 0.00 43.49 4.45
1329 1449 1.619669 CTAGCCCCCTTTCCCAGGT 60.620 63.158 0.00 0.00 42.02 4.00
1330 1450 1.926426 CTAGCCCCCTTTCCCAGGTG 61.926 65.000 0.00 0.00 42.02 4.00
1331 1451 2.424989 TAGCCCCCTTTCCCAGGTGA 62.425 60.000 0.00 0.00 42.02 4.02
1332 1452 2.852281 GCCCCCTTTCCCAGGTGAA 61.852 63.158 0.00 0.00 42.02 3.18
1333 1453 1.076727 CCCCCTTTCCCAGGTGAAC 59.923 63.158 0.00 0.00 42.02 3.18
1334 1454 1.076727 CCCCTTTCCCAGGTGAACC 59.923 63.158 0.00 0.00 42.02 3.62
1344 1464 3.944476 AGGTGAACCTGCTTGCTAG 57.056 52.632 0.00 0.00 46.55 3.42
1345 1465 0.322008 AGGTGAACCTGCTTGCTAGC 60.322 55.000 13.56 13.56 46.55 3.42
1346 1466 2.727343 AGGTGAACCTGCTTGCTAGCT 61.727 52.381 20.64 0.19 46.55 3.32
1347 1467 4.209167 AGGTGAACCTGCTTGCTAGCTT 62.209 50.000 20.64 7.24 46.55 3.74
1348 1468 5.992025 AGGTGAACCTGCTTGCTAGCTTC 62.992 52.174 20.64 15.68 46.55 3.86
1353 1473 4.308526 GCTTGCTAGCTTCCTGCA 57.691 55.556 17.23 0.00 44.27 4.41
1354 1474 2.559785 GCTTGCTAGCTTCCTGCAA 58.440 52.632 17.23 12.92 44.27 4.08
1355 1475 0.169894 GCTTGCTAGCTTCCTGCAAC 59.830 55.000 17.23 6.31 44.27 4.17
1356 1476 0.807496 CTTGCTAGCTTCCTGCAACC 59.193 55.000 17.23 0.00 45.94 3.77
1357 1477 0.110295 TTGCTAGCTTCCTGCAACCA 59.890 50.000 17.23 0.00 45.94 3.67
1358 1478 0.606401 TGCTAGCTTCCTGCAACCAC 60.606 55.000 17.23 0.00 45.94 4.16
1359 1479 1.308783 GCTAGCTTCCTGCAACCACC 61.309 60.000 7.70 0.00 45.94 4.61
1360 1480 0.036732 CTAGCTTCCTGCAACCACCA 59.963 55.000 0.00 0.00 45.94 4.17
1361 1481 0.250727 TAGCTTCCTGCAACCACCAC 60.251 55.000 0.00 0.00 45.94 4.16
1362 1482 1.529244 GCTTCCTGCAACCACCACT 60.529 57.895 0.00 0.00 42.31 4.00
1363 1483 1.799258 GCTTCCTGCAACCACCACTG 61.799 60.000 0.00 0.00 42.31 3.66
1364 1484 0.466189 CTTCCTGCAACCACCACTGT 60.466 55.000 0.00 0.00 0.00 3.55
1420 1546 1.941734 CGTCAAGATCCTCGCGCTC 60.942 63.158 5.56 0.00 0.00 5.03
1495 1633 3.842923 CCGCCTCCATCGTCAGCT 61.843 66.667 0.00 0.00 0.00 4.24
1499 1637 2.580815 CTCCATCGTCAGCTGCCA 59.419 61.111 9.47 0.00 0.00 4.92
1561 1705 3.715097 GAGGGTGCTGCTCTGGCT 61.715 66.667 0.00 0.00 39.59 4.75
1651 1795 2.123897 AACCCGCTGCACAACCTT 60.124 55.556 0.00 0.00 0.00 3.50
1667 1811 4.508128 TTCGATGAGCCGTCGCCC 62.508 66.667 10.75 0.00 41.89 6.13
1670 1814 2.125106 GATGAGCCGTCGCCCTTT 60.125 61.111 0.00 0.00 34.57 3.11
1683 1827 3.191539 CCTTTCTGCTCGCTCGCC 61.192 66.667 0.00 0.00 0.00 5.54
1684 1828 3.549150 CTTTCTGCTCGCTCGCCG 61.549 66.667 0.00 0.00 38.61 6.46
1685 1829 3.971453 CTTTCTGCTCGCTCGCCGA 62.971 63.158 0.00 0.00 45.15 5.54
1686 1830 3.567478 TTTCTGCTCGCTCGCCGAA 62.567 57.895 0.00 0.00 46.81 4.30
1713 1858 4.432115 CGATGCATGTATGAATTCGACGAG 60.432 45.833 2.46 0.21 31.29 4.18
1717 1862 4.034048 GCATGTATGAATTCGACGAGGTTT 59.966 41.667 0.00 0.00 0.00 3.27
1751 1896 1.336980 GCTATTGCCTCGGTAGTAGCC 60.337 57.143 14.64 1.56 39.04 3.93
1752 1897 2.240279 CTATTGCCTCGGTAGTAGCCT 58.760 52.381 0.00 0.00 0.00 4.58
1753 1898 1.041437 ATTGCCTCGGTAGTAGCCTC 58.959 55.000 0.00 0.00 0.00 4.70
1754 1899 0.033405 TTGCCTCGGTAGTAGCCTCT 60.033 55.000 0.00 0.00 0.00 3.69
1755 1900 0.033405 TGCCTCGGTAGTAGCCTCTT 60.033 55.000 0.00 0.00 0.00 2.85
1796 1947 3.252458 TGCACGCGATGATGTATACTACT 59.748 43.478 15.93 0.00 0.00 2.57
1840 2024 5.707411 ATACGTATTACCGCACAAAACTC 57.293 39.130 1.14 0.00 0.00 3.01
1850 2034 2.410262 CGCACAAAACTCATCGTCTGTC 60.410 50.000 0.00 0.00 0.00 3.51
1852 2036 3.187227 GCACAAAACTCATCGTCTGTCAT 59.813 43.478 0.00 0.00 0.00 3.06
1858 2042 4.257267 ACTCATCGTCTGTCATGTTCAA 57.743 40.909 0.00 0.00 0.00 2.69
1860 2044 2.995939 TCATCGTCTGTCATGTTCAAGC 59.004 45.455 0.00 0.00 0.00 4.01
1861 2045 2.524569 TCGTCTGTCATGTTCAAGCA 57.475 45.000 0.00 0.00 0.00 3.91
1862 2046 3.044235 TCGTCTGTCATGTTCAAGCAT 57.956 42.857 0.00 0.00 0.00 3.79
1864 2048 2.738314 CGTCTGTCATGTTCAAGCATCA 59.262 45.455 0.00 0.00 0.00 3.07
1865 2049 3.187022 CGTCTGTCATGTTCAAGCATCAA 59.813 43.478 0.00 0.00 0.00 2.57
1866 2050 4.668431 CGTCTGTCATGTTCAAGCATCAAG 60.668 45.833 0.00 0.00 0.00 3.02
1867 2051 3.754850 TCTGTCATGTTCAAGCATCAAGG 59.245 43.478 0.00 0.00 0.00 3.61
1868 2052 2.229543 TGTCATGTTCAAGCATCAAGGC 59.770 45.455 0.00 0.00 0.00 4.35
1877 2061 0.804989 AGCATCAAGGCTTTGTACGC 59.195 50.000 8.56 9.50 42.71 4.42
1878 2062 2.549847 AGCATCAAGGCTTTGTACGCC 61.550 52.381 8.56 2.28 42.71 5.68
1883 2067 3.497031 GGCTTTGTACGCCGGAGC 61.497 66.667 5.05 2.26 37.87 4.70
1896 2080 2.328099 CGGAGCTTGGTGCCTGAAC 61.328 63.158 0.00 0.00 44.23 3.18
1897 2081 1.073897 GGAGCTTGGTGCCTGAACT 59.926 57.895 0.00 0.00 44.23 3.01
1898 2082 1.239968 GGAGCTTGGTGCCTGAACTG 61.240 60.000 0.00 0.00 44.23 3.16
1900 2084 0.183492 AGCTTGGTGCCTGAACTGAA 59.817 50.000 0.00 0.00 44.23 3.02
1901 2085 0.312102 GCTTGGTGCCTGAACTGAAC 59.688 55.000 0.00 0.00 35.15 3.18
1902 2086 1.972872 CTTGGTGCCTGAACTGAACT 58.027 50.000 0.00 0.00 0.00 3.01
1903 2087 2.810400 GCTTGGTGCCTGAACTGAACTA 60.810 50.000 0.00 0.00 35.15 2.24
1915 2099 4.214119 TGAACTGAACTATTTCTGCTGTGC 59.786 41.667 0.44 0.00 34.77 4.57
1916 2100 3.743521 ACTGAACTATTTCTGCTGTGCA 58.256 40.909 0.44 0.00 34.77 4.57
1920 2104 4.156556 TGAACTATTTCTGCTGTGCAATCC 59.843 41.667 0.00 0.00 38.41 3.01
1929 2113 1.403249 GCTGTGCAATCCATGTGTTCC 60.403 52.381 0.00 0.00 0.00 3.62
1931 2115 1.887854 TGTGCAATCCATGTGTTCCAG 59.112 47.619 0.00 0.00 0.00 3.86
1958 2142 8.498054 GAGAATCCTTCATTCACAACTATGAA 57.502 34.615 0.00 0.00 43.27 2.57
1972 2156 2.568956 ACTATGAAGGCTGAAGCTGTCA 59.431 45.455 1.74 6.59 41.70 3.58
2005 2207 8.950210 TGCTTCTCATTTCCTACAAGAAAATAG 58.050 33.333 0.00 0.00 39.11 1.73
2009 2211 7.888021 TCTCATTTCCTACAAGAAAATAGCCAA 59.112 33.333 0.00 0.00 39.11 4.52
2011 2213 8.522830 TCATTTCCTACAAGAAAATAGCCAAAG 58.477 33.333 0.00 0.00 39.11 2.77
2026 2228 3.194062 GCCAAAGCTCTGTACTGATCTC 58.806 50.000 6.58 0.00 35.50 2.75
2029 2231 5.394663 GCCAAAGCTCTGTACTGATCTCTTA 60.395 44.000 6.58 0.00 35.50 2.10
2030 2232 6.039616 CCAAAGCTCTGTACTGATCTCTTAC 58.960 44.000 6.58 0.00 0.00 2.34
2031 2233 5.845391 AAGCTCTGTACTGATCTCTTACC 57.155 43.478 6.58 0.00 0.00 2.85
2032 2234 4.861196 AGCTCTGTACTGATCTCTTACCA 58.139 43.478 2.62 0.00 0.00 3.25
2033 2235 5.454062 AGCTCTGTACTGATCTCTTACCAT 58.546 41.667 2.62 0.00 0.00 3.55
2034 2236 5.896678 AGCTCTGTACTGATCTCTTACCATT 59.103 40.000 2.62 0.00 0.00 3.16
2035 2237 6.382570 AGCTCTGTACTGATCTCTTACCATTT 59.617 38.462 2.62 0.00 0.00 2.32
2037 2239 7.631594 GCTCTGTACTGATCTCTTACCATTTCA 60.632 40.741 2.62 0.00 0.00 2.69
2040 2242 8.547967 TGTACTGATCTCTTACCATTTCAAAC 57.452 34.615 0.00 0.00 0.00 2.93
2046 2248 6.633500 TCTCTTACCATTTCAAACAAGTGG 57.367 37.500 0.00 0.00 36.06 4.00
2065 2267 5.003804 AGTGGTCATTTCTCGCAACTAATT 58.996 37.500 0.00 0.00 0.00 1.40
2066 2268 5.088739 GTGGTCATTTCTCGCAACTAATTG 58.911 41.667 0.00 0.00 38.99 2.32
2067 2269 5.000591 TGGTCATTTCTCGCAACTAATTGA 58.999 37.500 0.00 0.00 38.15 2.57
2089 2295 3.118519 ACGAGTTCTCCTCTCTACTCTCC 60.119 52.174 0.00 0.00 38.11 3.71
2092 2298 3.202151 AGTTCTCCTCTCTACTCTCCCAG 59.798 52.174 0.00 0.00 0.00 4.45
2097 2305 2.176798 CCTCTCTACTCTCCCAGTGGAT 59.823 54.545 11.95 0.00 41.51 3.41
2164 2375 2.953020 TGTTGTGTGCAAGGAACAAAC 58.047 42.857 6.99 4.04 35.70 2.93
2187 2398 6.739112 ACTAATGGCTTTTGTTTCTCTTCAC 58.261 36.000 0.00 0.00 0.00 3.18
2208 2427 7.209471 TCACAAAATGACCATAAACCTGTAC 57.791 36.000 0.00 0.00 29.99 2.90
2209 2428 7.001674 TCACAAAATGACCATAAACCTGTACT 58.998 34.615 0.00 0.00 29.99 2.73
2210 2429 8.158132 TCACAAAATGACCATAAACCTGTACTA 58.842 33.333 0.00 0.00 29.99 1.82
2211 2430 8.234546 CACAAAATGACCATAAACCTGTACTAC 58.765 37.037 0.00 0.00 0.00 2.73
2214 2433 8.506168 AAATGACCATAAACCTGTACTACATG 57.494 34.615 0.00 0.00 0.00 3.21
2216 2435 7.432148 TGACCATAAACCTGTACTACATGAT 57.568 36.000 0.00 0.00 0.00 2.45
2217 2436 7.857456 TGACCATAAACCTGTACTACATGATT 58.143 34.615 0.00 0.00 0.00 2.57
2219 2438 9.257651 GACCATAAACCTGTACTACATGATTAC 57.742 37.037 0.00 0.00 0.00 1.89
2220 2439 8.764558 ACCATAAACCTGTACTACATGATTACA 58.235 33.333 0.00 2.81 0.00 2.41
2221 2440 9.261180 CCATAAACCTGTACTACATGATTACAG 57.739 37.037 18.37 18.37 41.58 2.74
2227 2446 7.113658 CTGTACTACATGATTACAGGAACCT 57.886 40.000 17.90 0.00 39.29 3.50
2228 2447 7.490657 TGTACTACATGATTACAGGAACCTT 57.509 36.000 0.00 0.00 0.00 3.50
2229 2448 7.913789 TGTACTACATGATTACAGGAACCTTT 58.086 34.615 0.00 0.00 0.00 3.11
2230 2449 8.380099 TGTACTACATGATTACAGGAACCTTTT 58.620 33.333 0.00 0.00 0.00 2.27
2231 2450 7.923414 ACTACATGATTACAGGAACCTTTTC 57.077 36.000 0.00 0.00 0.00 2.29
2274 2493 5.485662 GAAACCAATTCCAGAATCCTACG 57.514 43.478 0.00 0.00 31.44 3.51
2277 2497 5.888982 ACCAATTCCAGAATCCTACGTAT 57.111 39.130 0.00 0.00 0.00 3.06
2278 2498 5.855045 ACCAATTCCAGAATCCTACGTATC 58.145 41.667 0.00 0.00 0.00 2.24
2283 2503 8.307483 CAATTCCAGAATCCTACGTATCAGTAT 58.693 37.037 0.00 0.00 0.00 2.12
2343 2567 3.392285 ACTGGCCATGATCAGCAATACTA 59.608 43.478 5.51 0.00 34.57 1.82
2344 2568 4.042560 ACTGGCCATGATCAGCAATACTAT 59.957 41.667 5.51 0.00 34.57 2.12
2345 2569 5.249163 ACTGGCCATGATCAGCAATACTATA 59.751 40.000 5.51 0.00 34.57 1.31
2346 2570 6.069789 ACTGGCCATGATCAGCAATACTATAT 60.070 38.462 5.51 0.00 34.57 0.86
2347 2571 6.117488 TGGCCATGATCAGCAATACTATATG 58.883 40.000 0.00 0.00 0.00 1.78
2348 2572 5.530171 GGCCATGATCAGCAATACTATATGG 59.470 44.000 8.97 4.54 36.51 2.74
2349 2573 6.615264 CCATGATCAGCAATACTATATGGC 57.385 41.667 0.09 0.00 0.00 4.40
2350 2574 6.117488 CCATGATCAGCAATACTATATGGCA 58.883 40.000 0.09 0.00 0.00 4.92
2351 2575 6.771267 CCATGATCAGCAATACTATATGGCAT 59.229 38.462 4.88 4.88 0.00 4.40
2352 2576 7.041303 CCATGATCAGCAATACTATATGGCATC 60.041 40.741 1.65 0.00 0.00 3.91
2353 2577 7.191593 TGATCAGCAATACTATATGGCATCT 57.808 36.000 1.65 0.00 0.00 2.90
2354 2578 7.627311 TGATCAGCAATACTATATGGCATCTT 58.373 34.615 1.65 0.00 0.00 2.40
2355 2579 7.767659 TGATCAGCAATACTATATGGCATCTTC 59.232 37.037 1.65 0.00 0.00 2.87
2356 2580 7.008021 TCAGCAATACTATATGGCATCTTCA 57.992 36.000 1.65 0.00 0.00 3.02
2357 2581 7.627311 TCAGCAATACTATATGGCATCTTCAT 58.373 34.615 1.65 0.00 0.00 2.57
2358 2582 7.767659 TCAGCAATACTATATGGCATCTTCATC 59.232 37.037 1.65 0.00 0.00 2.92
2359 2583 7.769507 CAGCAATACTATATGGCATCTTCATCT 59.230 37.037 1.65 0.00 0.00 2.90
2360 2584 7.986320 AGCAATACTATATGGCATCTTCATCTC 59.014 37.037 1.65 0.00 0.00 2.75
2361 2585 7.042858 GCAATACTATATGGCATCTTCATCTCG 60.043 40.741 1.65 0.00 0.00 4.04
2362 2586 4.753233 ACTATATGGCATCTTCATCTCGC 58.247 43.478 1.65 0.00 0.00 5.03
2363 2587 2.070262 TATGGCATCTTCATCTCGCG 57.930 50.000 1.65 0.00 0.00 5.87
2364 2588 0.602106 ATGGCATCTTCATCTCGCGG 60.602 55.000 6.13 0.00 0.00 6.46
2365 2589 1.227380 GGCATCTTCATCTCGCGGT 60.227 57.895 6.13 0.00 0.00 5.68
2366 2590 0.032130 GGCATCTTCATCTCGCGGTA 59.968 55.000 6.13 0.00 0.00 4.02
2367 2591 1.538204 GGCATCTTCATCTCGCGGTAA 60.538 52.381 6.13 0.00 0.00 2.85
2368 2592 1.789464 GCATCTTCATCTCGCGGTAAG 59.211 52.381 6.13 0.00 0.00 2.34
2369 2593 1.789464 CATCTTCATCTCGCGGTAAGC 59.211 52.381 6.13 0.00 43.95 3.09
2370 2594 1.103803 TCTTCATCTCGCGGTAAGCT 58.896 50.000 6.13 0.00 45.59 3.74
2371 2595 1.476891 TCTTCATCTCGCGGTAAGCTT 59.523 47.619 6.13 3.48 45.59 3.74
2372 2596 2.094182 TCTTCATCTCGCGGTAAGCTTT 60.094 45.455 3.20 0.00 45.59 3.51
2382 2606 2.031157 GCGGTAAGCTTTGTGACACAAT 60.031 45.455 21.19 9.37 44.04 2.71
2412 2636 7.476540 AGTTAGTTTCAAGTGTTTCCCTTTT 57.523 32.000 0.00 0.00 0.00 2.27
2413 2637 7.544622 AGTTAGTTTCAAGTGTTTCCCTTTTC 58.455 34.615 0.00 0.00 0.00 2.29
2449 2678 3.124297 GTGCTGAGAAGAAACGGAATGAG 59.876 47.826 0.00 0.00 0.00 2.90
2481 2710 4.510167 ATCAAGGAGGAAACATCCGAAT 57.490 40.909 0.00 0.00 42.02 3.34
2549 2778 5.128919 GTGTCTTAGAATCAGCCATCCATT 58.871 41.667 0.00 0.00 0.00 3.16
2577 2809 3.902162 AAGTGCGCCGCAAGCAATG 62.902 57.895 15.84 0.00 46.97 2.82
2691 2923 4.563184 ACGCATCAGTTTATTCTCTTCGAC 59.437 41.667 0.00 0.00 0.00 4.20
2740 2978 4.109050 GAGCTGCAGTAGACATTACAGAC 58.891 47.826 16.64 0.00 0.00 3.51
2800 3041 5.641636 ACCAGCTAAACAAAACAAACCAAAG 59.358 36.000 0.00 0.00 0.00 2.77
2808 3049 3.793797 AAACAAACCAAAGCGCTACTT 57.206 38.095 12.05 0.00 41.70 2.24
2809 3050 2.774439 ACAAACCAAAGCGCTACTTG 57.226 45.000 12.05 13.11 39.09 3.16
2810 3051 2.021457 ACAAACCAAAGCGCTACTTGT 58.979 42.857 12.05 13.03 39.09 3.16
2832 3073 3.963374 TCCTACTGATGATCTGTGGAAGG 59.037 47.826 15.46 13.29 30.44 3.46
2851 3092 2.165845 AGGACGGACTGAAAATACCTCG 59.834 50.000 0.00 0.00 0.00 4.63
2855 3096 2.280628 GGACTGAAAATACCTCGCCTG 58.719 52.381 0.00 0.00 0.00 4.85
2856 3097 2.280628 GACTGAAAATACCTCGCCTGG 58.719 52.381 0.00 0.00 0.00 4.45
2875 3122 5.461327 CCTGGGTAGGTAGGTGAAACTATA 58.539 45.833 0.00 0.00 39.39 1.31
2876 3123 6.082707 CCTGGGTAGGTAGGTGAAACTATAT 58.917 44.000 0.00 0.00 39.39 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.840576 ACCCTGGCGGTAGCAAAA 59.159 55.556 0.00 0.00 45.97 2.44
11 12 1.153168 CTACCGCCATGAACCCTGG 60.153 63.158 0.00 0.00 36.81 4.45
12 13 1.153168 CCTACCGCCATGAACCCTG 60.153 63.158 0.00 0.00 0.00 4.45
13 14 2.375345 CCCTACCGCCATGAACCCT 61.375 63.158 0.00 0.00 0.00 4.34
14 15 2.192175 CCCTACCGCCATGAACCC 59.808 66.667 0.00 0.00 0.00 4.11
15 16 1.451387 CACCCTACCGCCATGAACC 60.451 63.158 0.00 0.00 0.00 3.62
16 17 2.112815 GCACCCTACCGCCATGAAC 61.113 63.158 0.00 0.00 0.00 3.18
17 18 2.130821 TTGCACCCTACCGCCATGAA 62.131 55.000 0.00 0.00 0.00 2.57
18 19 2.597818 TTGCACCCTACCGCCATGA 61.598 57.895 0.00 0.00 0.00 3.07
19 20 2.045438 TTGCACCCTACCGCCATG 60.045 61.111 0.00 0.00 0.00 3.66
20 21 2.045340 GTTGCACCCTACCGCCAT 60.045 61.111 0.00 0.00 0.00 4.40
21 22 3.545124 CTGTTGCACCCTACCGCCA 62.545 63.158 0.00 0.00 0.00 5.69
22 23 2.746277 CTGTTGCACCCTACCGCC 60.746 66.667 0.00 0.00 0.00 6.13
23 24 3.431725 GCTGTTGCACCCTACCGC 61.432 66.667 0.00 0.00 39.41 5.68
24 25 1.895020 TAGGCTGTTGCACCCTACCG 61.895 60.000 0.00 0.00 41.91 4.02
25 26 0.392595 GTAGGCTGTTGCACCCTACC 60.393 60.000 15.89 3.16 43.31 3.18
26 27 0.392595 GGTAGGCTGTTGCACCCTAC 60.393 60.000 17.46 17.46 46.60 3.18
27 28 1.895020 CGGTAGGCTGTTGCACCCTA 61.895 60.000 0.00 0.00 41.91 3.53
28 29 2.757077 GGTAGGCTGTTGCACCCT 59.243 61.111 0.00 0.00 41.91 4.34
29 30 2.746277 CGGTAGGCTGTTGCACCC 60.746 66.667 0.00 0.00 41.91 4.61
30 31 2.032071 ACGGTAGGCTGTTGCACC 59.968 61.111 0.00 0.00 41.91 5.01
31 32 1.291877 CTGACGGTAGGCTGTTGCAC 61.292 60.000 0.00 0.00 41.91 4.57
32 33 1.005037 CTGACGGTAGGCTGTTGCA 60.005 57.895 0.00 0.00 41.91 4.08
33 34 1.741770 CCTGACGGTAGGCTGTTGC 60.742 63.158 0.00 0.00 33.67 4.17
34 35 0.320374 TTCCTGACGGTAGGCTGTTG 59.680 55.000 0.00 0.00 37.76 3.33
35 36 0.320697 GTTCCTGACGGTAGGCTGTT 59.679 55.000 0.00 0.00 37.76 3.16
36 37 1.542187 GGTTCCTGACGGTAGGCTGT 61.542 60.000 0.00 0.00 37.76 4.40
37 38 1.218316 GGTTCCTGACGGTAGGCTG 59.782 63.158 0.00 0.00 37.76 4.85
38 39 0.544595 AAGGTTCCTGACGGTAGGCT 60.545 55.000 0.00 0.00 37.76 4.58
39 40 0.391263 CAAGGTTCCTGACGGTAGGC 60.391 60.000 2.58 0.00 37.76 3.93
40 41 0.249398 CCAAGGTTCCTGACGGTAGG 59.751 60.000 1.08 1.08 39.29 3.18
41 42 0.391263 GCCAAGGTTCCTGACGGTAG 60.391 60.000 0.00 0.00 0.00 3.18
42 43 1.675219 GCCAAGGTTCCTGACGGTA 59.325 57.895 0.00 0.00 0.00 4.02
43 44 2.430367 GCCAAGGTTCCTGACGGT 59.570 61.111 0.00 0.00 0.00 4.83
44 45 2.742372 CGCCAAGGTTCCTGACGG 60.742 66.667 0.00 0.00 0.00 4.79
45 46 2.742372 CCGCCAAGGTTCCTGACG 60.742 66.667 0.00 0.00 34.51 4.35
53 54 4.590280 GGATGTTTCCTACCGCCAAGGT 62.590 54.545 0.00 0.00 44.03 3.50
54 55 2.017113 GGATGTTTCCTACCGCCAAGG 61.017 57.143 0.00 0.00 41.81 3.61
55 56 1.379527 GGATGTTTCCTACCGCCAAG 58.620 55.000 0.00 0.00 39.14 3.61
56 57 0.034863 GGGATGTTTCCTACCGCCAA 60.035 55.000 0.00 0.00 42.20 4.52
57 58 0.912487 AGGGATGTTTCCTACCGCCA 60.912 55.000 0.00 0.00 42.20 5.69
58 59 1.125633 TAGGGATGTTTCCTACCGCC 58.874 55.000 0.00 0.00 42.20 6.13
59 60 2.609737 CGATAGGGATGTTTCCTACCGC 60.610 54.545 0.00 0.00 37.12 5.68
60 61 2.626743 ACGATAGGGATGTTTCCTACCG 59.373 50.000 2.66 2.66 46.51 4.02
61 62 3.640029 TGACGATAGGGATGTTTCCTACC 59.360 47.826 0.00 0.00 42.20 3.18
62 63 4.931661 TGACGATAGGGATGTTTCCTAC 57.068 45.455 0.00 0.00 42.20 3.18
63 64 5.188163 TGTTTGACGATAGGGATGTTTCCTA 59.812 40.000 0.00 0.00 42.20 2.94
64 65 4.019681 TGTTTGACGATAGGGATGTTTCCT 60.020 41.667 0.00 0.00 42.20 3.36
65 66 4.258543 TGTTTGACGATAGGGATGTTTCC 58.741 43.478 0.00 0.00 41.77 3.13
66 67 5.063564 GTCTGTTTGACGATAGGGATGTTTC 59.936 44.000 0.00 0.00 43.77 2.78
67 68 4.935808 GTCTGTTTGACGATAGGGATGTTT 59.064 41.667 0.00 0.00 43.77 2.83
68 69 4.504858 GTCTGTTTGACGATAGGGATGTT 58.495 43.478 0.00 0.00 43.77 2.71
69 70 4.124851 GTCTGTTTGACGATAGGGATGT 57.875 45.455 0.00 0.00 43.77 3.06
80 81 1.610886 GGCTACCCCAGTCTGTTTGAC 60.611 57.143 0.00 0.00 45.67 3.18
81 82 0.690762 GGCTACCCCAGTCTGTTTGA 59.309 55.000 0.00 0.00 0.00 2.69
82 83 0.693049 AGGCTACCCCAGTCTGTTTG 59.307 55.000 0.00 0.00 37.99 2.93
83 84 3.182105 AGGCTACCCCAGTCTGTTT 57.818 52.632 0.00 0.00 37.99 2.83
87 88 0.412244 TGTACAGGCTACCCCAGTCT 59.588 55.000 0.00 0.00 40.98 3.24
88 89 1.066358 GTTGTACAGGCTACCCCAGTC 60.066 57.143 0.00 0.00 34.77 3.51
89 90 0.981943 GTTGTACAGGCTACCCCAGT 59.018 55.000 0.00 0.00 37.14 4.00
90 91 0.252197 GGTTGTACAGGCTACCCCAG 59.748 60.000 3.42 0.00 35.39 4.45
91 92 1.202769 GGGTTGTACAGGCTACCCCA 61.203 60.000 19.13 0.00 44.85 4.96
92 93 1.605992 GGGTTGTACAGGCTACCCC 59.394 63.158 19.13 8.96 44.85 4.95
94 95 1.483827 GGTAGGGTTGTACAGGCTACC 59.516 57.143 5.97 5.97 34.32 3.18
95 96 1.135721 CGGTAGGGTTGTACAGGCTAC 59.864 57.143 0.00 0.00 0.00 3.58
96 97 1.272648 ACGGTAGGGTTGTACAGGCTA 60.273 52.381 0.00 0.00 0.00 3.93
97 98 0.543646 ACGGTAGGGTTGTACAGGCT 60.544 55.000 0.00 0.00 0.00 4.58
98 99 0.108472 GACGGTAGGGTTGTACAGGC 60.108 60.000 0.00 0.00 0.00 4.85
99 100 1.259609 TGACGGTAGGGTTGTACAGG 58.740 55.000 0.00 0.00 0.00 4.00
100 101 2.353406 CCTTGACGGTAGGGTTGTACAG 60.353 54.545 0.00 0.00 0.00 2.74
101 102 1.619827 CCTTGACGGTAGGGTTGTACA 59.380 52.381 0.00 0.00 0.00 2.90
102 103 1.620323 ACCTTGACGGTAGGGTTGTAC 59.380 52.381 2.22 0.00 46.73 2.90
103 104 1.619827 CACCTTGACGGTAGGGTTGTA 59.380 52.381 2.22 0.00 46.94 2.41
104 105 0.395312 CACCTTGACGGTAGGGTTGT 59.605 55.000 2.22 0.00 46.94 3.32
105 106 0.953960 GCACCTTGACGGTAGGGTTG 60.954 60.000 2.22 0.00 46.94 3.77
106 107 1.125711 AGCACCTTGACGGTAGGGTT 61.126 55.000 2.22 0.00 46.94 4.11
107 108 1.535687 AGCACCTTGACGGTAGGGT 60.536 57.895 2.22 0.00 46.94 4.34
108 109 1.218316 GAGCACCTTGACGGTAGGG 59.782 63.158 2.22 0.00 46.94 3.53
109 110 1.153823 CGAGCACCTTGACGGTAGG 60.154 63.158 0.00 0.00 46.94 3.18
110 111 1.153823 CCGAGCACCTTGACGGTAG 60.154 63.158 0.00 0.00 46.94 3.18
111 112 2.967397 CCGAGCACCTTGACGGTA 59.033 61.111 0.00 0.00 46.94 4.02
114 115 2.607668 TATCGCCGAGCACCTTGACG 62.608 60.000 0.00 0.00 0.00 4.35
115 116 0.872021 CTATCGCCGAGCACCTTGAC 60.872 60.000 0.00 0.00 0.00 3.18
116 117 1.437573 CTATCGCCGAGCACCTTGA 59.562 57.895 0.00 0.00 0.00 3.02
117 118 1.592669 CCTATCGCCGAGCACCTTG 60.593 63.158 0.00 0.00 0.00 3.61
118 119 2.815308 CCTATCGCCGAGCACCTT 59.185 61.111 0.00 0.00 0.00 3.50
119 120 3.917760 GCCTATCGCCGAGCACCT 61.918 66.667 0.00 0.00 0.00 4.00
120 121 4.221422 TGCCTATCGCCGAGCACC 62.221 66.667 0.00 0.00 36.24 5.01
122 123 4.569023 CGTGCCTATCGCCGAGCA 62.569 66.667 0.00 0.00 36.24 4.26
123 124 4.266070 TCGTGCCTATCGCCGAGC 62.266 66.667 0.00 0.00 35.93 5.03
124 125 2.050895 CTCGTGCCTATCGCCGAG 60.051 66.667 0.00 7.76 45.36 4.63
125 126 4.266070 GCTCGTGCCTATCGCCGA 62.266 66.667 0.00 0.00 37.68 5.54
126 127 4.569023 TGCTCGTGCCTATCGCCG 62.569 66.667 7.05 0.00 38.71 6.46
127 128 2.962253 GTGCTCGTGCCTATCGCC 60.962 66.667 7.05 0.00 38.71 5.54
128 129 2.202743 TGTGCTCGTGCCTATCGC 60.203 61.111 7.05 0.00 38.71 4.58
129 130 1.153842 TGTGTGCTCGTGCCTATCG 60.154 57.895 7.05 0.00 38.71 2.92
130 131 0.108615 AGTGTGTGCTCGTGCCTATC 60.109 55.000 7.05 0.00 38.71 2.08
131 132 0.390340 CAGTGTGTGCTCGTGCCTAT 60.390 55.000 7.05 0.00 38.71 2.57
132 133 1.006220 CAGTGTGTGCTCGTGCCTA 60.006 57.895 7.05 0.00 38.71 3.93
133 134 2.280389 CAGTGTGTGCTCGTGCCT 60.280 61.111 7.05 0.00 38.71 4.75
134 135 2.588877 ACAGTGTGTGCTCGTGCC 60.589 61.111 7.05 0.00 38.71 5.01
135 136 2.628106 CACAGTGTGTGCTCGTGC 59.372 61.111 15.43 1.71 41.89 5.34
151 152 7.416213 CCACAAATTCCTTCTAAGTGTTGAACA 60.416 37.037 0.00 0.00 0.00 3.18
152 153 6.918022 CCACAAATTCCTTCTAAGTGTTGAAC 59.082 38.462 0.00 0.00 0.00 3.18
153 154 6.605594 ACCACAAATTCCTTCTAAGTGTTGAA 59.394 34.615 0.00 0.00 0.00 2.69
154 155 6.126409 ACCACAAATTCCTTCTAAGTGTTGA 58.874 36.000 0.00 0.00 0.00 3.18
155 156 6.391227 ACCACAAATTCCTTCTAAGTGTTG 57.609 37.500 0.00 0.00 0.00 3.33
156 157 6.715264 CCTACCACAAATTCCTTCTAAGTGTT 59.285 38.462 0.00 0.00 0.00 3.32
157 158 6.238648 CCTACCACAAATTCCTTCTAAGTGT 58.761 40.000 0.00 0.00 0.00 3.55
158 159 5.123979 GCCTACCACAAATTCCTTCTAAGTG 59.876 44.000 0.00 0.00 0.00 3.16
159 160 5.254115 GCCTACCACAAATTCCTTCTAAGT 58.746 41.667 0.00 0.00 0.00 2.24
160 161 4.640647 GGCCTACCACAAATTCCTTCTAAG 59.359 45.833 0.00 0.00 35.26 2.18
161 162 4.043561 TGGCCTACCACAAATTCCTTCTAA 59.956 41.667 3.32 0.00 42.67 2.10
162 163 3.589735 TGGCCTACCACAAATTCCTTCTA 59.410 43.478 3.32 0.00 42.67 2.10
163 164 2.378547 TGGCCTACCACAAATTCCTTCT 59.621 45.455 3.32 0.00 42.67 2.85
164 165 2.802719 TGGCCTACCACAAATTCCTTC 58.197 47.619 3.32 0.00 42.67 3.46
165 166 2.990740 TGGCCTACCACAAATTCCTT 57.009 45.000 3.32 0.00 42.67 3.36
176 177 0.465642 GTAGGGTTGCATGGCCTACC 60.466 60.000 3.32 3.66 33.43 3.18
177 178 0.465642 GGTAGGGTTGCATGGCCTAC 60.466 60.000 3.32 0.00 34.41 3.18
178 179 1.919771 GGTAGGGTTGCATGGCCTA 59.080 57.895 3.32 0.00 0.00 3.93
179 180 2.683475 GGTAGGGTTGCATGGCCT 59.317 61.111 3.32 0.00 0.00 5.19
180 181 2.828549 CGGTAGGGTTGCATGGCC 60.829 66.667 0.00 0.00 0.00 5.36
181 182 3.518068 GCGGTAGGGTTGCATGGC 61.518 66.667 0.00 0.00 0.00 4.40
182 183 2.828549 GGCGGTAGGGTTGCATGG 60.829 66.667 0.00 0.00 0.00 3.66
183 184 2.045438 TGGCGGTAGGGTTGCATG 60.045 61.111 0.00 0.00 0.00 4.06
184 185 2.272146 CTGGCGGTAGGGTTGCAT 59.728 61.111 0.00 0.00 0.00 3.96
185 186 4.028490 CCTGGCGGTAGGGTTGCA 62.028 66.667 0.00 0.00 34.06 4.08
191 192 2.687566 AAGGTCCCTGGCGGTAGG 60.688 66.667 0.00 0.00 37.59 3.18
192 193 1.987855 TCAAGGTCCCTGGCGGTAG 60.988 63.158 0.00 0.00 0.00 3.18
193 194 2.120940 TCAAGGTCCCTGGCGGTA 59.879 61.111 0.00 0.00 0.00 4.02
194 195 3.637273 GTCAAGGTCCCTGGCGGT 61.637 66.667 0.00 0.00 0.00 5.68
195 196 4.760047 CGTCAAGGTCCCTGGCGG 62.760 72.222 6.58 0.00 0.00 6.13
196 197 4.760047 CCGTCAAGGTCCCTGGCG 62.760 72.222 7.54 7.54 34.51 5.69
205 206 6.535745 GGGTATAACAGCCTACCGTCAAGG 62.536 54.167 0.00 0.00 43.32 3.61
206 207 3.492137 GGGTATAACAGCCTACCGTCAAG 60.492 52.174 0.00 0.00 41.95 3.02
207 208 2.431782 GGGTATAACAGCCTACCGTCAA 59.568 50.000 0.00 0.00 41.95 3.18
208 209 2.034124 GGGTATAACAGCCTACCGTCA 58.966 52.381 0.00 0.00 41.95 4.35
209 210 2.808523 GGGTATAACAGCCTACCGTC 57.191 55.000 0.00 0.00 41.95 4.79
216 217 0.034476 GGCGGTAGGGTATAACAGCC 59.966 60.000 1.03 1.03 46.91 4.85
217 218 0.754472 TGGCGGTAGGGTATAACAGC 59.246 55.000 0.00 0.00 36.28 4.40
218 219 3.575256 TGTATGGCGGTAGGGTATAACAG 59.425 47.826 0.00 0.00 0.00 3.16
219 220 3.574749 TGTATGGCGGTAGGGTATAACA 58.425 45.455 0.00 0.00 0.00 2.41
220 221 4.309933 GTTGTATGGCGGTAGGGTATAAC 58.690 47.826 0.00 0.00 0.00 1.89
221 222 3.324556 GGTTGTATGGCGGTAGGGTATAA 59.675 47.826 0.00 0.00 0.00 0.98
222 223 2.899256 GGTTGTATGGCGGTAGGGTATA 59.101 50.000 0.00 0.00 0.00 1.47
223 224 1.695788 GGTTGTATGGCGGTAGGGTAT 59.304 52.381 0.00 0.00 0.00 2.73
224 225 1.122227 GGTTGTATGGCGGTAGGGTA 58.878 55.000 0.00 0.00 0.00 3.69
225 226 0.619543 AGGTTGTATGGCGGTAGGGT 60.620 55.000 0.00 0.00 0.00 4.34
226 227 0.179056 CAGGTTGTATGGCGGTAGGG 60.179 60.000 0.00 0.00 0.00 3.53
227 228 0.179056 CCAGGTTGTATGGCGGTAGG 60.179 60.000 0.00 0.00 0.00 3.18
228 229 3.379650 CCAGGTTGTATGGCGGTAG 57.620 57.895 0.00 0.00 0.00 3.18
242 243 0.965363 ACCATTTTGCTACCGCCAGG 60.965 55.000 0.00 0.00 45.13 4.45
243 244 0.451783 GACCATTTTGCTACCGCCAG 59.548 55.000 0.00 0.00 34.43 4.85
244 245 0.250945 TGACCATTTTGCTACCGCCA 60.251 50.000 0.00 0.00 34.43 5.69
245 246 1.102978 ATGACCATTTTGCTACCGCC 58.897 50.000 0.00 0.00 34.43 6.13
246 247 3.315191 ACATATGACCATTTTGCTACCGC 59.685 43.478 10.38 0.00 0.00 5.68
247 248 5.273170 CAACATATGACCATTTTGCTACCG 58.727 41.667 10.38 0.00 0.00 4.02
248 249 5.043248 GCAACATATGACCATTTTGCTACC 58.957 41.667 10.38 0.00 37.08 3.18
249 250 5.649557 TGCAACATATGACCATTTTGCTAC 58.350 37.500 20.53 1.46 40.01 3.58
250 251 5.911378 TGCAACATATGACCATTTTGCTA 57.089 34.783 20.53 9.63 40.01 3.49
251 252 4.804868 TGCAACATATGACCATTTTGCT 57.195 36.364 20.53 0.00 40.01 3.91
252 253 6.425577 AATTGCAACATATGACCATTTTGC 57.574 33.333 10.38 13.77 39.80 3.68
275 276 5.591472 TCGATATCGACCCTAGTCTGAAAAA 59.409 40.000 23.48 0.00 44.22 1.94
276 277 5.128205 TCGATATCGACCCTAGTCTGAAAA 58.872 41.667 23.48 0.00 44.22 2.29
277 278 4.711399 TCGATATCGACCCTAGTCTGAAA 58.289 43.478 23.48 0.00 44.22 2.69
278 279 4.347360 TCGATATCGACCCTAGTCTGAA 57.653 45.455 23.48 0.00 44.22 3.02
291 292 8.709646 CCCTTTTCTAAAACCTATTCGATATCG 58.290 37.037 19.14 19.14 41.45 2.92
292 293 9.557061 ACCCTTTTCTAAAACCTATTCGATATC 57.443 33.333 0.00 0.00 0.00 1.63
293 294 9.557061 GACCCTTTTCTAAAACCTATTCGATAT 57.443 33.333 0.00 0.00 0.00 1.63
294 295 8.542080 TGACCCTTTTCTAAAACCTATTCGATA 58.458 33.333 0.00 0.00 0.00 2.92
295 296 7.399634 TGACCCTTTTCTAAAACCTATTCGAT 58.600 34.615 0.00 0.00 0.00 3.59
296 297 6.771573 TGACCCTTTTCTAAAACCTATTCGA 58.228 36.000 0.00 0.00 0.00 3.71
297 298 7.443259 TTGACCCTTTTCTAAAACCTATTCG 57.557 36.000 0.00 0.00 0.00 3.34
298 299 9.472361 GTTTTGACCCTTTTCTAAAACCTATTC 57.528 33.333 0.00 0.00 36.01 1.75
299 300 8.983789 TGTTTTGACCCTTTTCTAAAACCTATT 58.016 29.630 0.00 0.00 39.32 1.73
300 301 8.418662 GTGTTTTGACCCTTTTCTAAAACCTAT 58.581 33.333 0.00 0.00 39.32 2.57
301 302 7.415429 CGTGTTTTGACCCTTTTCTAAAACCTA 60.415 37.037 0.00 0.00 39.32 3.08
302 303 6.626402 CGTGTTTTGACCCTTTTCTAAAACCT 60.626 38.462 0.00 0.00 39.32 3.50
303 304 5.517411 CGTGTTTTGACCCTTTTCTAAAACC 59.483 40.000 0.00 0.00 39.32 3.27
304 305 6.324042 TCGTGTTTTGACCCTTTTCTAAAAC 58.676 36.000 0.00 0.00 40.05 2.43
305 306 6.512342 TCGTGTTTTGACCCTTTTCTAAAA 57.488 33.333 0.00 0.00 0.00 1.52
306 307 6.512342 TTCGTGTTTTGACCCTTTTCTAAA 57.488 33.333 0.00 0.00 0.00 1.85
307 308 6.512342 TTTCGTGTTTTGACCCTTTTCTAA 57.488 33.333 0.00 0.00 0.00 2.10
308 309 6.702716 ATTTCGTGTTTTGACCCTTTTCTA 57.297 33.333 0.00 0.00 0.00 2.10
309 310 5.592104 ATTTCGTGTTTTGACCCTTTTCT 57.408 34.783 0.00 0.00 0.00 2.52
310 311 6.656314 AAATTTCGTGTTTTGACCCTTTTC 57.344 33.333 0.00 0.00 0.00 2.29
311 312 6.621812 GCAAAATTTCGTGTTTTGACCCTTTT 60.622 34.615 19.19 0.00 45.02 2.27
312 313 5.163804 GCAAAATTTCGTGTTTTGACCCTTT 60.164 36.000 19.19 0.00 45.02 3.11
313 314 4.331443 GCAAAATTTCGTGTTTTGACCCTT 59.669 37.500 19.19 0.00 45.02 3.95
314 315 3.868661 GCAAAATTTCGTGTTTTGACCCT 59.131 39.130 19.19 0.00 45.02 4.34
315 316 3.001838 GGCAAAATTTCGTGTTTTGACCC 59.998 43.478 19.19 11.78 44.81 4.46
316 317 4.190304 GGCAAAATTTCGTGTTTTGACC 57.810 40.909 19.19 16.15 44.81 4.02
318 319 4.748892 TGAGGCAAAATTTCGTGTTTTGA 58.251 34.783 19.19 3.75 45.02 2.69
319 320 4.025813 CCTGAGGCAAAATTTCGTGTTTTG 60.026 41.667 14.02 14.02 45.01 2.44
320 321 4.119136 CCTGAGGCAAAATTTCGTGTTTT 58.881 39.130 0.00 0.00 0.00 2.43
321 322 3.383185 TCCTGAGGCAAAATTTCGTGTTT 59.617 39.130 0.00 0.00 0.00 2.83
322 323 2.955660 TCCTGAGGCAAAATTTCGTGTT 59.044 40.909 0.00 0.00 0.00 3.32
323 324 2.293399 GTCCTGAGGCAAAATTTCGTGT 59.707 45.455 0.00 0.00 0.00 4.49
324 325 2.665519 CGTCCTGAGGCAAAATTTCGTG 60.666 50.000 0.00 0.00 0.00 4.35
325 326 1.535462 CGTCCTGAGGCAAAATTTCGT 59.465 47.619 0.00 0.00 0.00 3.85
326 327 1.135689 CCGTCCTGAGGCAAAATTTCG 60.136 52.381 0.00 0.00 0.00 3.46
327 328 2.159382 TCCGTCCTGAGGCAAAATTTC 58.841 47.619 0.00 0.00 0.00 2.17
328 329 2.162681 CTCCGTCCTGAGGCAAAATTT 58.837 47.619 0.00 0.00 0.00 1.82
329 330 1.826385 CTCCGTCCTGAGGCAAAATT 58.174 50.000 0.00 0.00 0.00 1.82
330 331 0.678048 GCTCCGTCCTGAGGCAAAAT 60.678 55.000 0.00 0.00 32.81 1.82
331 332 1.302511 GCTCCGTCCTGAGGCAAAA 60.303 57.895 0.00 0.00 32.81 2.44
332 333 2.347490 GCTCCGTCCTGAGGCAAA 59.653 61.111 0.00 0.00 32.81 3.68
333 334 4.069232 CGCTCCGTCCTGAGGCAA 62.069 66.667 0.00 0.00 32.81 4.52
337 338 4.504916 CAGCCGCTCCGTCCTGAG 62.505 72.222 0.00 0.00 35.40 3.35
341 342 4.803426 CTCACAGCCGCTCCGTCC 62.803 72.222 0.00 0.00 0.00 4.79
342 343 2.209064 TTACTCACAGCCGCTCCGTC 62.209 60.000 0.00 0.00 0.00 4.79
343 344 2.214181 CTTACTCACAGCCGCTCCGT 62.214 60.000 0.00 0.00 0.00 4.69
359 360 1.067142 CACAGCCGGAAGTACTGCTTA 60.067 52.381 5.05 0.00 37.59 3.09
369 370 1.367471 CTCACAGTCACAGCCGGAA 59.633 57.895 5.05 0.00 0.00 4.30
408 420 1.480137 CCATCACACTGTCTCTCTCCC 59.520 57.143 0.00 0.00 0.00 4.30
588 629 2.103771 ACAGTGTCAGAGCACAGTTGAT 59.896 45.455 0.00 0.00 41.52 2.57
693 743 2.027024 TGTGTCCGTCTCACGCAC 59.973 61.111 0.00 0.00 40.91 5.34
723 773 1.606885 AACAATTGCATCCGCCCTGG 61.607 55.000 5.05 0.00 37.32 4.45
724 774 0.247185 AAACAATTGCATCCGCCCTG 59.753 50.000 5.05 0.00 37.32 4.45
726 776 1.358877 GAAAACAATTGCATCCGCCC 58.641 50.000 5.05 0.00 37.32 6.13
728 778 0.366534 GCGAAAACAATTGCATCCGC 59.633 50.000 16.12 16.12 39.24 5.54
729 779 0.991344 GGCGAAAACAATTGCATCCG 59.009 50.000 5.05 5.98 0.00 4.18
730 780 0.991344 CGGCGAAAACAATTGCATCC 59.009 50.000 0.00 0.00 0.00 3.51
731 781 1.975837 TCGGCGAAAACAATTGCATC 58.024 45.000 7.35 0.52 0.00 3.91
732 782 2.529151 GATCGGCGAAAACAATTGCAT 58.471 42.857 15.93 0.00 0.00 3.96
733 783 1.727535 CGATCGGCGAAAACAATTGCA 60.728 47.619 15.93 0.00 44.57 4.08
734 784 0.907171 CGATCGGCGAAAACAATTGC 59.093 50.000 15.93 0.00 44.57 3.56
955 1007 2.742053 CGACCCTGATTTGACGTGAAAT 59.258 45.455 12.96 12.96 0.00 2.17
956 1008 2.139917 CGACCCTGATTTGACGTGAAA 58.860 47.619 1.83 1.83 0.00 2.69
957 1009 1.790755 CGACCCTGATTTGACGTGAA 58.209 50.000 0.00 0.00 0.00 3.18
958 1010 0.669318 GCGACCCTGATTTGACGTGA 60.669 55.000 0.00 0.00 0.00 4.35
959 1011 0.670546 AGCGACCCTGATTTGACGTG 60.671 55.000 0.00 0.00 0.00 4.49
960 1012 0.389948 GAGCGACCCTGATTTGACGT 60.390 55.000 0.00 0.00 0.00 4.34
987 1039 0.594284 GAACCGTGGACGATCGATCC 60.594 60.000 24.34 23.00 43.02 3.36
988 1040 0.928908 CGAACCGTGGACGATCGATC 60.929 60.000 24.34 15.68 44.80 3.69
1060 1112 4.626081 GATGGATGGACGGGCGGG 62.626 72.222 0.00 0.00 0.00 6.13
1061 1113 2.680974 AATGATGGATGGACGGGCGG 62.681 60.000 0.00 0.00 0.00 6.13
1062 1114 1.227943 AATGATGGATGGACGGGCG 60.228 57.895 0.00 0.00 0.00 6.13
1063 1115 1.799258 GCAATGATGGATGGACGGGC 61.799 60.000 0.00 0.00 0.00 6.13
1064 1116 1.174712 GGCAATGATGGATGGACGGG 61.175 60.000 0.00 0.00 0.00 5.28
1065 1117 1.174712 GGGCAATGATGGATGGACGG 61.175 60.000 0.00 0.00 0.00 4.79
1066 1118 0.466007 TGGGCAATGATGGATGGACG 60.466 55.000 0.00 0.00 0.00 4.79
1067 1119 1.616865 CATGGGCAATGATGGATGGAC 59.383 52.381 0.00 0.00 38.72 4.02
1068 1120 1.481615 CCATGGGCAATGATGGATGGA 60.482 52.381 2.85 0.00 41.63 3.41
1069 1121 0.973632 CCATGGGCAATGATGGATGG 59.026 55.000 2.85 0.00 41.63 3.51
1121 1187 2.019249 GGATGTTTGATAGCAGCAGCA 58.981 47.619 3.17 0.00 45.49 4.41
1122 1188 2.295885 AGGATGTTTGATAGCAGCAGC 58.704 47.619 0.00 0.00 42.56 5.25
1123 1189 4.272018 GTGTAGGATGTTTGATAGCAGCAG 59.728 45.833 0.00 0.00 0.00 4.24
1124 1190 4.191544 GTGTAGGATGTTTGATAGCAGCA 58.808 43.478 0.00 0.00 0.00 4.41
1125 1191 3.246226 CGTGTAGGATGTTTGATAGCAGC 59.754 47.826 0.00 0.00 0.00 5.25
1126 1192 3.246226 GCGTGTAGGATGTTTGATAGCAG 59.754 47.826 0.00 0.00 0.00 4.24
1127 1193 3.194861 GCGTGTAGGATGTTTGATAGCA 58.805 45.455 0.00 0.00 0.00 3.49
1129 1195 3.555956 GTGGCGTGTAGGATGTTTGATAG 59.444 47.826 0.00 0.00 0.00 2.08
1130 1196 3.527533 GTGGCGTGTAGGATGTTTGATA 58.472 45.455 0.00 0.00 0.00 2.15
1131 1197 2.356135 GTGGCGTGTAGGATGTTTGAT 58.644 47.619 0.00 0.00 0.00 2.57
1132 1198 1.803334 GTGGCGTGTAGGATGTTTGA 58.197 50.000 0.00 0.00 0.00 2.69
1133 1199 0.442310 CGTGGCGTGTAGGATGTTTG 59.558 55.000 0.00 0.00 0.00 2.93
1134 1200 1.296056 GCGTGGCGTGTAGGATGTTT 61.296 55.000 0.00 0.00 0.00 2.83
1136 1202 2.125673 GCGTGGCGTGTAGGATGT 60.126 61.111 0.00 0.00 0.00 3.06
1199 1318 2.593956 GGGTGGAAGAAGCGGAGGT 61.594 63.158 0.00 0.00 44.60 3.85
1205 1324 1.452108 CGGGATGGGTGGAAGAAGC 60.452 63.158 0.00 0.00 0.00 3.86
1206 1325 0.107654 GACGGGATGGGTGGAAGAAG 60.108 60.000 0.00 0.00 0.00 2.85
1241 1360 2.159085 GGAAGAGGAGATAACGGTGGTG 60.159 54.545 0.00 0.00 0.00 4.17
1262 1381 2.041405 GACAGGGGAGGAGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
1298 1417 1.253100 GGGCTAGCTGCTACTAGGAG 58.747 60.000 15.72 0.00 40.08 3.69
1338 1458 2.946947 GGTTGCAGGAAGCTAGCAA 58.053 52.632 18.83 10.54 44.16 3.91
1339 1459 4.722193 GGTTGCAGGAAGCTAGCA 57.278 55.556 18.83 0.00 44.16 3.49
1340 1460 1.308783 GGTGGTTGCAGGAAGCTAGC 61.309 60.000 6.62 6.62 45.94 3.42
1341 1461 0.036732 TGGTGGTTGCAGGAAGCTAG 59.963 55.000 5.39 0.00 45.94 3.42
1342 1462 0.250727 GTGGTGGTTGCAGGAAGCTA 60.251 55.000 5.39 0.00 45.94 3.32
1343 1463 1.529244 GTGGTGGTTGCAGGAAGCT 60.529 57.895 5.39 0.00 45.94 3.74
1344 1464 1.529244 AGTGGTGGTTGCAGGAAGC 60.529 57.895 0.00 0.00 45.96 3.86
1345 1465 0.466189 ACAGTGGTGGTTGCAGGAAG 60.466 55.000 0.00 0.00 0.00 3.46
1346 1466 0.465460 GACAGTGGTGGTTGCAGGAA 60.465 55.000 0.00 0.00 0.00 3.36
1347 1467 1.148273 GACAGTGGTGGTTGCAGGA 59.852 57.895 0.00 0.00 0.00 3.86
1348 1468 1.152984 TGACAGTGGTGGTTGCAGG 60.153 57.895 0.00 0.00 0.00 4.85
1349 1469 1.168407 CCTGACAGTGGTGGTTGCAG 61.168 60.000 0.93 0.00 0.00 4.41
1350 1470 1.152984 CCTGACAGTGGTGGTTGCA 60.153 57.895 0.93 0.00 0.00 4.08
1351 1471 1.152963 ACCTGACAGTGGTGGTTGC 60.153 57.895 0.93 0.00 36.30 4.17
1357 1477 0.469917 CTGGTTCACCTGACAGTGGT 59.530 55.000 0.93 0.00 38.34 4.16
1358 1478 0.250467 CCTGGTTCACCTGACAGTGG 60.250 60.000 0.93 0.00 38.34 4.00
1359 1479 0.758734 TCCTGGTTCACCTGACAGTG 59.241 55.000 0.93 0.52 37.15 3.66
1360 1480 1.051812 CTCCTGGTTCACCTGACAGT 58.948 55.000 0.93 0.00 37.15 3.55
1361 1481 0.322975 CCTCCTGGTTCACCTGACAG 59.677 60.000 4.49 0.00 37.15 3.51
1362 1482 1.768684 GCCTCCTGGTTCACCTGACA 61.769 60.000 4.49 0.00 37.15 3.58
1363 1483 1.003233 GCCTCCTGGTTCACCTGAC 60.003 63.158 4.49 0.00 37.15 3.51
1364 1484 0.842030 ATGCCTCCTGGTTCACCTGA 60.842 55.000 4.49 0.00 37.15 3.86
1392 1512 0.109272 GATCTTGACGCACCTGACGA 60.109 55.000 0.00 0.00 0.00 4.20
1397 1517 1.513158 CGAGGATCTTGACGCACCT 59.487 57.895 0.00 0.00 0.00 4.00
1398 1518 4.094684 CGAGGATCTTGACGCACC 57.905 61.111 0.00 0.00 0.00 5.01
1483 1609 2.265739 GTGGCAGCTGACGATGGA 59.734 61.111 20.43 0.00 0.00 3.41
1486 1612 2.267006 CTGGTGGCAGCTGACGAT 59.733 61.111 20.43 0.00 0.00 3.73
1667 1811 3.549150 CGGCGAGCGAGCAGAAAG 61.549 66.667 0.00 0.00 39.27 2.62
1670 1814 4.778415 GTTCGGCGAGCGAGCAGA 62.778 66.667 10.46 6.95 39.42 4.26
1683 1827 0.111134 CATACATGCATCGGCGTTCG 60.111 55.000 6.85 0.00 45.35 3.95
1684 1828 1.217001 TCATACATGCATCGGCGTTC 58.783 50.000 6.85 0.00 45.35 3.95
1685 1829 1.662517 TTCATACATGCATCGGCGTT 58.337 45.000 6.85 0.00 45.35 4.84
1686 1830 1.882912 ATTCATACATGCATCGGCGT 58.117 45.000 6.85 0.00 45.35 5.68
1713 1858 0.520847 GCAGAGCAGAGCAGAAAACC 59.479 55.000 0.00 0.00 0.00 3.27
1717 1862 2.902523 CAATAGCAGAGCAGAGCAGAA 58.097 47.619 0.00 0.00 0.00 3.02
1751 1896 7.010830 TGCAATCAATCATACGAAGAAGAAGAG 59.989 37.037 0.00 0.00 0.00 2.85
1752 1897 6.818142 TGCAATCAATCATACGAAGAAGAAGA 59.182 34.615 0.00 0.00 0.00 2.87
1753 1898 6.904011 GTGCAATCAATCATACGAAGAAGAAG 59.096 38.462 0.00 0.00 0.00 2.85
1754 1899 6.455513 CGTGCAATCAATCATACGAAGAAGAA 60.456 38.462 0.00 0.00 33.78 2.52
1755 1900 5.005682 CGTGCAATCAATCATACGAAGAAGA 59.994 40.000 0.00 0.00 33.78 2.87
1829 1981 1.526887 ACAGACGATGAGTTTTGTGCG 59.473 47.619 0.00 0.00 32.27 5.34
1830 1982 2.543848 TGACAGACGATGAGTTTTGTGC 59.456 45.455 0.00 0.00 33.19 4.57
1833 2017 4.997905 ACATGACAGACGATGAGTTTTG 57.002 40.909 0.00 0.00 0.00 2.44
1840 2024 2.738314 TGCTTGAACATGACAGACGATG 59.262 45.455 0.00 0.00 0.00 3.84
1858 2042 0.804989 GCGTACAAAGCCTTGATGCT 59.195 50.000 1.09 0.00 45.43 3.79
1867 2051 2.033194 AAGCTCCGGCGTACAAAGC 61.033 57.895 6.01 6.75 44.37 3.51
1868 2052 1.635663 CCAAGCTCCGGCGTACAAAG 61.636 60.000 6.01 0.00 44.37 2.77
1869 2053 1.669760 CCAAGCTCCGGCGTACAAA 60.670 57.895 6.01 0.00 44.37 2.83
1870 2054 2.047655 CCAAGCTCCGGCGTACAA 60.048 61.111 6.01 0.00 44.37 2.41
1871 2055 3.307906 ACCAAGCTCCGGCGTACA 61.308 61.111 6.01 0.00 44.37 2.90
1872 2056 2.813908 CACCAAGCTCCGGCGTAC 60.814 66.667 6.01 0.00 44.37 3.67
1873 2057 4.752879 GCACCAAGCTCCGGCGTA 62.753 66.667 6.01 0.00 44.37 4.42
1877 2061 3.551496 TTCAGGCACCAAGCTCCGG 62.551 63.158 0.00 0.00 44.79 5.14
1878 2062 2.032528 TTCAGGCACCAAGCTCCG 59.967 61.111 0.00 0.00 44.79 4.63
1879 2063 1.073897 AGTTCAGGCACCAAGCTCC 59.926 57.895 0.00 0.00 44.79 4.70
1880 2064 0.250467 TCAGTTCAGGCACCAAGCTC 60.250 55.000 0.00 0.00 44.79 4.09
1881 2065 0.183492 TTCAGTTCAGGCACCAAGCT 59.817 50.000 0.00 0.00 44.79 3.74
1882 2066 0.312102 GTTCAGTTCAGGCACCAAGC 59.688 55.000 0.00 0.00 44.65 4.01
1883 2067 1.972872 AGTTCAGTTCAGGCACCAAG 58.027 50.000 0.00 0.00 0.00 3.61
1896 2080 4.754372 TTGCACAGCAGAAATAGTTCAG 57.246 40.909 5.62 0.00 40.61 3.02
1897 2081 4.156556 GGATTGCACAGCAGAAATAGTTCA 59.843 41.667 5.62 0.00 40.61 3.18
1898 2082 4.156556 TGGATTGCACAGCAGAAATAGTTC 59.843 41.667 0.00 0.00 40.61 3.01
1900 2084 3.689347 TGGATTGCACAGCAGAAATAGT 58.311 40.909 0.00 0.00 40.61 2.12
1901 2085 4.097437 ACATGGATTGCACAGCAGAAATAG 59.903 41.667 0.00 0.00 40.61 1.73
1902 2086 4.018490 ACATGGATTGCACAGCAGAAATA 58.982 39.130 0.00 0.00 40.61 1.40
1903 2087 2.829720 ACATGGATTGCACAGCAGAAAT 59.170 40.909 0.00 0.00 40.61 2.17
1915 2099 2.025981 TCTCCCTGGAACACATGGATTG 60.026 50.000 0.00 0.00 42.10 2.67
1916 2100 2.278245 TCTCCCTGGAACACATGGATT 58.722 47.619 0.00 0.00 42.10 3.01
1920 2104 2.240667 AGGATTCTCCCTGGAACACATG 59.759 50.000 0.00 0.00 37.19 3.21
1948 2132 3.244700 ACAGCTTCAGCCTTCATAGTTGT 60.245 43.478 0.00 0.00 43.38 3.32
1954 2138 2.574006 TTGACAGCTTCAGCCTTCAT 57.426 45.000 0.00 0.00 43.38 2.57
1955 2139 2.346766 TTTGACAGCTTCAGCCTTCA 57.653 45.000 0.00 0.00 43.38 3.02
1956 2140 3.715628 TTTTTGACAGCTTCAGCCTTC 57.284 42.857 0.00 0.00 43.38 3.46
1977 2161 7.765695 TTTCTTGTAGGAAATGAGAAGCAAT 57.234 32.000 0.00 0.00 31.29 3.56
1980 2164 7.912773 GCTATTTTCTTGTAGGAAATGAGAAGC 59.087 37.037 3.70 1.61 35.51 3.86
2005 2207 3.118811 AGAGATCAGTACAGAGCTTTGGC 60.119 47.826 7.51 1.29 33.80 4.52
2009 2211 5.265191 TGGTAAGAGATCAGTACAGAGCTT 58.735 41.667 7.51 6.74 33.80 3.74
2011 2213 5.782893 ATGGTAAGAGATCAGTACAGAGC 57.217 43.478 0.00 0.00 0.00 4.09
2019 2221 8.019669 CACTTGTTTGAAATGGTAAGAGATCAG 58.980 37.037 0.00 0.00 0.00 2.90
2021 2223 7.040409 ACCACTTGTTTGAAATGGTAAGAGATC 60.040 37.037 0.00 0.00 41.90 2.75
2022 2224 6.777580 ACCACTTGTTTGAAATGGTAAGAGAT 59.222 34.615 0.00 0.00 41.90 2.75
2023 2225 6.126409 ACCACTTGTTTGAAATGGTAAGAGA 58.874 36.000 0.00 0.00 41.90 3.10
2024 2226 6.039270 TGACCACTTGTTTGAAATGGTAAGAG 59.961 38.462 1.24 0.00 43.73 2.85
2026 2228 6.142818 TGACCACTTGTTTGAAATGGTAAG 57.857 37.500 1.24 0.00 43.73 2.34
2029 2231 5.612725 AATGACCACTTGTTTGAAATGGT 57.387 34.783 0.84 0.84 46.37 3.55
2030 2232 6.282930 AGAAATGACCACTTGTTTGAAATGG 58.717 36.000 0.00 0.00 36.46 3.16
2031 2233 6.142798 CGAGAAATGACCACTTGTTTGAAATG 59.857 38.462 0.00 0.00 0.00 2.32
2032 2234 6.208644 CGAGAAATGACCACTTGTTTGAAAT 58.791 36.000 0.00 0.00 0.00 2.17
2033 2235 5.577835 CGAGAAATGACCACTTGTTTGAAA 58.422 37.500 0.00 0.00 0.00 2.69
2034 2236 4.497340 GCGAGAAATGACCACTTGTTTGAA 60.497 41.667 0.00 0.00 0.00 2.69
2035 2237 3.003275 GCGAGAAATGACCACTTGTTTGA 59.997 43.478 0.00 0.00 0.00 2.69
2037 2239 2.948979 TGCGAGAAATGACCACTTGTTT 59.051 40.909 0.00 0.00 0.00 2.83
2040 2242 2.549754 AGTTGCGAGAAATGACCACTTG 59.450 45.455 0.00 0.00 0.00 3.16
2046 2248 5.015733 CGTCAATTAGTTGCGAGAAATGAC 58.984 41.667 8.38 6.64 37.17 3.06
2089 2295 0.395311 ATGGCTGAGCAATCCACTGG 60.395 55.000 6.82 0.00 31.94 4.00
2092 2298 0.462581 TCGATGGCTGAGCAATCCAC 60.463 55.000 15.83 0.00 35.71 4.02
2097 2305 0.252761 TGGAATCGATGGCTGAGCAA 59.747 50.000 6.82 0.00 0.00 3.91
2164 2375 6.738114 TGTGAAGAGAAACAAAAGCCATTAG 58.262 36.000 0.00 0.00 0.00 1.73
2187 2398 8.330466 TGTAGTACAGGTTTATGGTCATTTTG 57.670 34.615 0.00 0.00 0.00 2.44
2236 2455 9.271828 GAATTGGTTTCCTGTAATCATGTTTTT 57.728 29.630 0.00 0.00 0.00 1.94
2237 2456 8.831715 GAATTGGTTTCCTGTAATCATGTTTT 57.168 30.769 0.00 0.00 0.00 2.43
2252 2471 4.941873 ACGTAGGATTCTGGAATTGGTTTC 59.058 41.667 0.00 0.00 0.00 2.78
2253 2472 4.918588 ACGTAGGATTCTGGAATTGGTTT 58.081 39.130 0.00 0.00 0.00 3.27
2266 2485 9.970553 TGTTCCTATATACTGATACGTAGGATT 57.029 33.333 0.08 0.00 37.95 3.01
2269 2488 9.837525 GTTTGTTCCTATATACTGATACGTAGG 57.162 37.037 0.08 0.00 0.00 3.18
2277 2497 8.408601 GTCGGTTAGTTTGTTCCTATATACTGA 58.591 37.037 0.00 0.00 0.00 3.41
2278 2498 8.192774 TGTCGGTTAGTTTGTTCCTATATACTG 58.807 37.037 0.00 0.00 0.00 2.74
2283 2503 6.938507 ACATGTCGGTTAGTTTGTTCCTATA 58.061 36.000 0.00 0.00 0.00 1.31
2299 2522 5.582269 AGTGTGATCTTGATTTACATGTCGG 59.418 40.000 0.00 0.00 0.00 4.79
2343 2567 2.614779 CGCGAGATGAAGATGCCATAT 58.385 47.619 0.00 0.00 0.00 1.78
2344 2568 1.337167 CCGCGAGATGAAGATGCCATA 60.337 52.381 8.23 0.00 0.00 2.74
2345 2569 0.602106 CCGCGAGATGAAGATGCCAT 60.602 55.000 8.23 0.00 0.00 4.40
2346 2570 1.227350 CCGCGAGATGAAGATGCCA 60.227 57.895 8.23 0.00 0.00 4.92
2347 2571 0.032130 TACCGCGAGATGAAGATGCC 59.968 55.000 8.23 0.00 0.00 4.40
2348 2572 1.789464 CTTACCGCGAGATGAAGATGC 59.211 52.381 8.23 0.00 0.00 3.91
2349 2573 1.789464 GCTTACCGCGAGATGAAGATG 59.211 52.381 8.23 0.00 0.00 2.90
2350 2574 1.683917 AGCTTACCGCGAGATGAAGAT 59.316 47.619 8.23 0.00 45.59 2.40
2351 2575 1.103803 AGCTTACCGCGAGATGAAGA 58.896 50.000 8.23 0.00 45.59 2.87
2352 2576 1.927895 AAGCTTACCGCGAGATGAAG 58.072 50.000 8.23 4.36 45.59 3.02
2353 2577 1.999735 CAAAGCTTACCGCGAGATGAA 59.000 47.619 8.23 0.00 45.59 2.57
2354 2578 1.067142 ACAAAGCTTACCGCGAGATGA 60.067 47.619 8.23 0.00 45.59 2.92
2355 2579 1.061131 CACAAAGCTTACCGCGAGATG 59.939 52.381 8.23 0.21 45.59 2.90
2356 2580 1.067142 TCACAAAGCTTACCGCGAGAT 60.067 47.619 8.23 0.00 45.59 2.75
2357 2581 0.315886 TCACAAAGCTTACCGCGAGA 59.684 50.000 8.23 0.00 45.59 4.04
2358 2582 0.438830 GTCACAAAGCTTACCGCGAG 59.561 55.000 8.23 0.00 45.59 5.03
2359 2583 0.249531 TGTCACAAAGCTTACCGCGA 60.250 50.000 8.23 0.00 45.59 5.87
2360 2584 0.110823 GTGTCACAAAGCTTACCGCG 60.111 55.000 0.00 0.00 45.59 6.46
2361 2585 0.941542 TGTGTCACAAAGCTTACCGC 59.058 50.000 2.31 0.00 39.57 5.68
2362 2586 3.896648 ATTGTGTCACAAAGCTTACCG 57.103 42.857 21.71 0.00 41.96 4.02
2363 2587 5.941948 ACTATTGTGTCACAAAGCTTACC 57.058 39.130 21.71 0.00 41.96 2.85
2364 2588 8.557029 ACTAAACTATTGTGTCACAAAGCTTAC 58.443 33.333 21.71 0.00 41.96 2.34
2365 2589 8.671384 ACTAAACTATTGTGTCACAAAGCTTA 57.329 30.769 21.71 17.54 41.96 3.09
2366 2590 7.568199 ACTAAACTATTGTGTCACAAAGCTT 57.432 32.000 21.71 17.40 41.96 3.74
2367 2591 7.568199 AACTAAACTATTGTGTCACAAAGCT 57.432 32.000 21.71 8.82 41.96 3.74
2368 2592 8.557029 ACTAACTAAACTATTGTGTCACAAAGC 58.443 33.333 21.71 0.00 41.96 3.51
2372 2596 9.602568 TGAAACTAACTAAACTATTGTGTCACA 57.397 29.630 0.18 0.18 0.00 3.58
2382 2606 9.112725 GGGAAACACTTGAAACTAACTAAACTA 57.887 33.333 0.00 0.00 0.00 2.24
2412 2636 0.104855 AGCACAAGAGACAACAGCGA 59.895 50.000 0.00 0.00 0.00 4.93
2413 2637 0.234106 CAGCACAAGAGACAACAGCG 59.766 55.000 0.00 0.00 0.00 5.18
2449 2678 4.630644 TCCTCCTTGATATCATTGGCTC 57.369 45.455 6.17 0.00 0.00 4.70
2481 2710 3.184382 TGGAGAATGTCAGTCAGGGTA 57.816 47.619 2.72 0.00 0.00 3.69
2577 2809 4.864704 TTCCTTTGGTTGGAGTATTTGC 57.135 40.909 0.00 0.00 34.76 3.68
2691 2923 2.033194 GCCTTTGTCTCGTTCCCGG 61.033 63.158 0.00 0.00 33.95 5.73
2728 2961 3.191581 CCTCGTGTCAGTCTGTAATGTCT 59.808 47.826 0.00 0.00 0.00 3.41
2729 2962 3.190744 TCCTCGTGTCAGTCTGTAATGTC 59.809 47.826 0.00 0.00 0.00 3.06
2740 2978 2.924454 GCTCTGTTCTTCCTCGTGTCAG 60.924 54.545 0.00 0.00 0.00 3.51
2777 3016 5.447144 GCTTTGGTTTGTTTTGTTTAGCTGG 60.447 40.000 0.00 0.00 0.00 4.85
2800 3041 2.099263 TCATCAGTAGGACAAGTAGCGC 59.901 50.000 0.00 0.00 0.00 5.92
2808 3049 3.981212 TCCACAGATCATCAGTAGGACA 58.019 45.455 0.00 0.00 0.00 4.02
2809 3050 4.202202 CCTTCCACAGATCATCAGTAGGAC 60.202 50.000 0.00 0.00 0.00 3.85
2810 3051 3.963374 CCTTCCACAGATCATCAGTAGGA 59.037 47.826 0.00 0.00 0.00 2.94
2832 3073 1.925185 GCGAGGTATTTTCAGTCCGTC 59.075 52.381 0.00 0.00 0.00 4.79
2855 3096 6.080009 TCCATATAGTTTCACCTACCTACCC 58.920 44.000 0.00 0.00 0.00 3.69
2856 3097 7.310485 CCATCCATATAGTTTCACCTACCTACC 60.310 44.444 0.00 0.00 0.00 3.18
2875 3122 1.143813 CAAGGAGTAGCCCCATCCAT 58.856 55.000 0.00 0.00 37.37 3.41
2876 3123 0.988145 CCAAGGAGTAGCCCCATCCA 60.988 60.000 0.00 0.00 37.37 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.