Multiple sequence alignment - TraesCS3B01G105500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G105500 chr3B 100.000 3863 0 0 1 3863 71454682 71450820 0.000000e+00 7134.0
1 TraesCS3B01G105500 chr3B 77.570 321 51 10 3557 3858 747532469 747532151 1.430000e-39 174.0
2 TraesCS3B01G105500 chr6B 97.181 3264 58 8 248 3482 182641038 182637780 0.000000e+00 5487.0
3 TraesCS3B01G105500 chr6B 96.753 308 10 0 3556 3863 18170174 18170481 7.400000e-142 514.0
4 TraesCS3B01G105500 chr6B 97.992 249 5 0 1 249 182641579 182641331 2.130000e-117 433.0
5 TraesCS3B01G105500 chr6B 91.049 324 12 3 3557 3863 697681792 697682115 4.610000e-114 422.0
6 TraesCS3B01G105500 chr6B 78.462 325 49 14 3557 3862 643500870 643500548 3.940000e-45 193.0
7 TraesCS3B01G105500 chr7D 95.311 3135 92 11 398 3482 580126704 580123575 0.000000e+00 4924.0
8 TraesCS3B01G105500 chr7D 94.424 2726 74 20 824 3482 511058861 511061575 0.000000e+00 4120.0
9 TraesCS3B01G105500 chr7D 96.653 747 23 2 1 746 511058111 511058856 0.000000e+00 1240.0
10 TraesCS3B01G105500 chr7D 97.821 413 8 1 1 413 580166342 580165931 0.000000e+00 712.0
11 TraesCS3B01G105500 chr7D 94.545 55 1 2 3429 3482 509160878 509160931 2.470000e-12 84.2
12 TraesCS3B01G105500 chr7D 94.444 54 1 2 3430 3482 31963591 31963539 8.900000e-12 82.4
13 TraesCS3B01G105500 chr7A 93.945 2593 85 15 1 2528 611768937 611771522 0.000000e+00 3853.0
14 TraesCS3B01G105500 chr7A 93.456 978 44 4 2519 3482 611771904 611772875 0.000000e+00 1434.0
15 TraesCS3B01G105500 chr2A 93.870 2594 85 16 1 2528 115431579 115434164 0.000000e+00 3842.0
16 TraesCS3B01G105500 chr2A 91.411 978 37 10 2519 3482 115434546 115435490 0.000000e+00 1297.0
17 TraesCS3B01G105500 chr2A 85.897 78 8 3 3409 3485 778369950 778369875 3.200000e-11 80.5
18 TraesCS3B01G105500 chr4B 92.973 2220 87 12 373 2528 438096937 438099151 0.000000e+00 3171.0
19 TraesCS3B01G105500 chr4B 92.323 977 39 7 2519 3481 438099489 438100443 0.000000e+00 1356.0
20 TraesCS3B01G105500 chr4B 84.238 774 96 15 1774 2528 77512102 77512868 0.000000e+00 730.0
21 TraesCS3B01G105500 chr1B 93.299 2164 76 15 429 2528 93951886 93954044 0.000000e+00 3129.0
22 TraesCS3B01G105500 chr1B 94.070 978 38 4 2519 3482 93954427 93955398 0.000000e+00 1467.0
23 TraesCS3B01G105500 chr1B 97.423 388 9 1 1 388 93951504 93951890 0.000000e+00 660.0
24 TraesCS3B01G105500 chr1B 88.206 407 36 5 2940 3344 657419991 657419595 3.490000e-130 475.0
25 TraesCS3B01G105500 chr1B 91.358 324 11 4 3557 3863 17045660 17045337 9.920000e-116 427.0
26 TraesCS3B01G105500 chr2D 91.701 1229 35 14 700 1865 640343854 640345078 0.000000e+00 1642.0
27 TraesCS3B01G105500 chr2D 95.716 677 19 3 1862 2528 640354951 640355627 0.000000e+00 1081.0
28 TraesCS3B01G105500 chr2D 89.499 838 38 13 2519 3344 640355925 640356724 0.000000e+00 1014.0
29 TraesCS3B01G105500 chr2D 95.568 519 20 3 187 704 640341621 640342137 0.000000e+00 828.0
30 TraesCS3B01G105500 chr2D 83.945 436 63 5 117 550 185391744 185392174 9.990000e-111 411.0
31 TraesCS3B01G105500 chr2D 95.105 143 6 1 3343 3484 640356760 640356902 1.400000e-54 224.0
32 TraesCS3B01G105500 chr3D 93.263 475 29 3 185 659 596338587 596339058 0.000000e+00 697.0
33 TraesCS3B01G105500 chr3D 88.372 86 10 0 921 1006 313784911 313784826 1.900000e-18 104.0
34 TraesCS3B01G105500 chr3D 81.600 125 21 2 1090 1214 161499532 161499654 6.830000e-18 102.0
35 TraesCS3B01G105500 chr6A 88.480 408 37 5 2940 3344 535392385 535392785 5.800000e-133 484.0
36 TraesCS3B01G105500 chr6A 89.145 304 16 1 3554 3840 557554490 557554187 2.840000e-96 363.0
37 TraesCS3B01G105500 chr6A 91.398 93 8 0 3771 3863 557554181 557554089 1.130000e-25 128.0
38 TraesCS3B01G105500 chr6A 90.909 55 5 0 3432 3486 603489643 603489589 1.490000e-09 75.0
39 TraesCS3B01G105500 chr4A 89.474 323 17 1 3558 3863 31593372 31593050 3.620000e-105 392.0
40 TraesCS3B01G105500 chr4A 81.839 435 62 7 2519 2949 544059475 544059054 2.210000e-92 350.0
41 TraesCS3B01G105500 chr4A 80.449 312 59 1 3553 3862 718596372 718596683 1.790000e-58 237.0
42 TraesCS3B01G105500 chr1D 88.272 324 20 5 3557 3863 408691013 408690691 4.710000e-99 372.0
43 TraesCS3B01G105500 chr1A 80.195 308 59 1 3557 3862 547899920 547899613 3.000000e-56 230.0
44 TraesCS3B01G105500 chr1A 94.643 56 1 2 3429 3483 41719973 41720027 6.880000e-13 86.1
45 TraesCS3B01G105500 chr1A 84.091 88 9 4 3681 3765 553133424 553133339 3.200000e-11 80.5
46 TraesCS3B01G105500 chr5A 81.818 132 24 0 3692 3823 638641087 638640956 1.130000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G105500 chr3B 71450820 71454682 3862 True 7134.0 7134 100.000000 1 3863 1 chr3B.!!$R1 3862
1 TraesCS3B01G105500 chr6B 182637780 182641579 3799 True 2960.0 5487 97.586500 1 3482 2 chr6B.!!$R2 3481
2 TraesCS3B01G105500 chr7D 580123575 580126704 3129 True 4924.0 4924 95.311000 398 3482 1 chr7D.!!$R2 3084
3 TraesCS3B01G105500 chr7D 511058111 511061575 3464 False 2680.0 4120 95.538500 1 3482 2 chr7D.!!$F2 3481
4 TraesCS3B01G105500 chr7A 611768937 611772875 3938 False 2643.5 3853 93.700500 1 3482 2 chr7A.!!$F1 3481
5 TraesCS3B01G105500 chr2A 115431579 115435490 3911 False 2569.5 3842 92.640500 1 3482 2 chr2A.!!$F1 3481
6 TraesCS3B01G105500 chr4B 438096937 438100443 3506 False 2263.5 3171 92.648000 373 3481 2 chr4B.!!$F2 3108
7 TraesCS3B01G105500 chr4B 77512102 77512868 766 False 730.0 730 84.238000 1774 2528 1 chr4B.!!$F1 754
8 TraesCS3B01G105500 chr1B 93951504 93955398 3894 False 1752.0 3129 94.930667 1 3482 3 chr1B.!!$F1 3481
9 TraesCS3B01G105500 chr2D 640341621 640345078 3457 False 1235.0 1642 93.634500 187 1865 2 chr2D.!!$F2 1678
10 TraesCS3B01G105500 chr2D 640354951 640356902 1951 False 773.0 1081 93.440000 1862 3484 3 chr2D.!!$F3 1622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 2.221169 GTGGTGTGTGCTGATCTTTCA 58.779 47.619 0.00 0.0 0.0 2.69 F
1073 3091 1.376424 CCAGTGATCAAGCGGCAGT 60.376 57.895 1.45 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1086 3104 1.152030 TCCCTTGTGCAGGTCTCCT 60.152 57.895 0.00 0.0 42.02 3.69 R
2950 5763 1.076024 AGAACAACAGGGATGGCATGT 59.924 47.619 3.81 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 2.221169 GTGGTGTGTGCTGATCTTTCA 58.779 47.619 0.00 0.00 0.00 2.69
141 142 5.930569 GCTGATCTTTCAATTGCTTTTTCCT 59.069 36.000 0.00 0.00 0.00 3.36
294 589 6.655078 AAACATTTCTTGGTCTTATGTGCT 57.345 33.333 0.00 0.00 30.43 4.40
302 597 6.711277 TCTTGGTCTTATGTGCTTGTTAGAT 58.289 36.000 0.00 0.00 0.00 1.98
879 2897 3.516700 TCCATTCATTGCTCTCTGACTCA 59.483 43.478 0.00 0.00 0.00 3.41
955 2973 4.307259 TGATGCCCTCTCTTAATTACCCT 58.693 43.478 0.00 0.00 0.00 4.34
1073 3091 1.376424 CCAGTGATCAAGCGGCAGT 60.376 57.895 1.45 0.00 0.00 4.40
1269 3287 7.446319 TGTGATGTTGATGAAGATTTCAGTCTT 59.554 33.333 0.00 0.00 43.98 3.01
1411 3452 8.153550 GGATAATTTGCTAGAATCTCCTTGAGA 58.846 37.037 0.00 0.00 43.20 3.27
1669 3721 3.123620 GCAGCCAGAACCAGCGAG 61.124 66.667 0.00 0.00 0.00 5.03
1815 3899 2.158769 TGGAGAGCAAAGCACAGAGAAA 60.159 45.455 0.00 0.00 0.00 2.52
2137 4222 3.778075 TCCCCGATTTCCACTTCAGATAA 59.222 43.478 0.00 0.00 0.00 1.75
2187 4284 4.381612 CCTGCTCACTATGTTTCCGACTAA 60.382 45.833 0.00 0.00 0.00 2.24
2260 4360 3.181487 ACAATGCAGAAAGGTGTGTGTTC 60.181 43.478 0.00 0.00 0.00 3.18
2599 5408 8.397148 CACTCTTTAAAAACCATGTGCATTTTT 58.603 29.630 11.31 11.31 38.64 1.94
2702 5514 4.177026 GAGTATATGCATAAGACAGCCGG 58.823 47.826 11.13 0.00 0.00 6.13
2877 5690 7.661968 TGAGCATCTAGAATGGTTATAGTCAC 58.338 38.462 0.00 0.00 34.92 3.67
2981 5801 6.877611 TCCCTGTTGTTCTGAAACTTATTC 57.122 37.500 0.00 0.00 36.30 1.75
2982 5802 6.361433 TCCCTGTTGTTCTGAAACTTATTCA 58.639 36.000 0.00 0.00 36.30 2.57
3138 5966 9.113838 AGTTATGTTCAGTGGTTATCATTCATC 57.886 33.333 0.00 0.00 0.00 2.92
3139 5967 8.892723 GTTATGTTCAGTGGTTATCATTCATCA 58.107 33.333 0.00 0.00 0.00 3.07
3204 6035 7.394359 TGAGTTTAGAAAATTTAGGCTCTGCAT 59.606 33.333 0.00 0.00 0.00 3.96
3359 6228 3.557898 CCTGTAAGCCACATGAGTTGACT 60.558 47.826 0.00 0.00 36.29 3.41
3407 6276 2.712057 AGCGCCAAAAAGTGAATGAG 57.288 45.000 2.29 0.00 0.00 2.90
3484 6353 1.072505 CGCCCCAACCACTAGTGTT 59.927 57.895 21.18 12.47 0.00 3.32
3485 6354 0.953960 CGCCCCAACCACTAGTGTTC 60.954 60.000 21.18 4.04 0.00 3.18
3486 6355 0.109723 GCCCCAACCACTAGTGTTCA 59.890 55.000 21.18 0.00 0.00 3.18
3487 6356 1.882352 GCCCCAACCACTAGTGTTCAG 60.882 57.143 21.18 8.57 0.00 3.02
3488 6357 1.697432 CCCCAACCACTAGTGTTCAGA 59.303 52.381 21.18 0.00 0.00 3.27
3489 6358 2.105821 CCCCAACCACTAGTGTTCAGAA 59.894 50.000 21.18 0.00 0.00 3.02
3490 6359 3.434453 CCCCAACCACTAGTGTTCAGAAA 60.434 47.826 21.18 0.00 0.00 2.52
3491 6360 3.564225 CCCAACCACTAGTGTTCAGAAAC 59.436 47.826 21.18 0.00 35.85 2.78
3492 6361 4.451900 CCAACCACTAGTGTTCAGAAACT 58.548 43.478 21.18 0.00 36.30 2.66
3493 6362 4.273480 CCAACCACTAGTGTTCAGAAACTG 59.727 45.833 21.18 4.68 36.30 3.16
3494 6363 4.073293 ACCACTAGTGTTCAGAAACTGG 57.927 45.455 21.18 4.22 36.30 4.00
3495 6364 3.454812 ACCACTAGTGTTCAGAAACTGGT 59.545 43.478 21.18 4.86 38.50 4.00
3497 6366 4.442706 CACTAGTGTTCAGAAACTGGTGT 58.557 43.478 15.06 10.82 45.57 4.16
3498 6367 4.271049 CACTAGTGTTCAGAAACTGGTGTG 59.729 45.833 15.06 15.39 45.57 3.82
3499 6368 3.350219 AGTGTTCAGAAACTGGTGTGT 57.650 42.857 0.00 0.00 36.30 3.72
3500 6369 3.009723 AGTGTTCAGAAACTGGTGTGTG 58.990 45.455 0.00 0.00 36.30 3.82
3501 6370 1.742831 TGTTCAGAAACTGGTGTGTGC 59.257 47.619 0.00 0.00 36.30 4.57
3502 6371 1.013596 TTCAGAAACTGGTGTGTGCG 58.986 50.000 0.00 0.00 31.51 5.34
3503 6372 0.107897 TCAGAAACTGGTGTGTGCGT 60.108 50.000 0.00 0.00 31.51 5.24
3504 6373 0.732571 CAGAAACTGGTGTGTGCGTT 59.267 50.000 0.00 0.00 0.00 4.84
3505 6374 1.937223 CAGAAACTGGTGTGTGCGTTA 59.063 47.619 0.00 0.00 0.00 3.18
3506 6375 1.937899 AGAAACTGGTGTGTGCGTTAC 59.062 47.619 0.00 0.00 0.00 2.50
3507 6376 0.653636 AAACTGGTGTGTGCGTTACG 59.346 50.000 0.00 0.00 0.00 3.18
3508 6377 1.155424 AACTGGTGTGTGCGTTACGG 61.155 55.000 6.94 0.00 0.00 4.02
3509 6378 1.300311 CTGGTGTGTGCGTTACGGA 60.300 57.895 6.94 0.00 0.00 4.69
3555 6424 4.016706 CAACGGGGAAGGGCGACT 62.017 66.667 0.00 0.00 0.00 4.18
3556 6425 3.703127 AACGGGGAAGGGCGACTC 61.703 66.667 0.00 0.00 0.00 3.36
3558 6427 4.452733 CGGGGAAGGGCGACTCAC 62.453 72.222 0.00 0.00 0.00 3.51
3559 6428 3.003763 GGGGAAGGGCGACTCACT 61.004 66.667 0.00 0.00 0.00 3.41
3560 6429 1.684734 GGGGAAGGGCGACTCACTA 60.685 63.158 0.00 0.00 0.00 2.74
3561 6430 1.516423 GGGAAGGGCGACTCACTAC 59.484 63.158 0.00 0.00 0.00 2.73
3562 6431 1.516423 GGAAGGGCGACTCACTACC 59.484 63.158 0.00 0.00 0.00 3.18
3563 6432 1.139095 GAAGGGCGACTCACTACCG 59.861 63.158 0.00 0.00 0.00 4.02
3564 6433 2.280823 GAAGGGCGACTCACTACCGG 62.281 65.000 0.00 0.00 0.00 5.28
3565 6434 2.753043 GGGCGACTCACTACCGGA 60.753 66.667 9.46 0.00 0.00 5.14
3566 6435 2.345760 GGGCGACTCACTACCGGAA 61.346 63.158 9.46 0.00 0.00 4.30
3567 6436 1.673808 GGGCGACTCACTACCGGAAT 61.674 60.000 9.46 0.00 0.00 3.01
3568 6437 1.027357 GGCGACTCACTACCGGAATA 58.973 55.000 9.46 0.00 0.00 1.75
3569 6438 1.406539 GGCGACTCACTACCGGAATAA 59.593 52.381 9.46 0.00 0.00 1.40
3570 6439 2.457970 GCGACTCACTACCGGAATAAC 58.542 52.381 9.46 0.00 0.00 1.89
3571 6440 2.098770 GCGACTCACTACCGGAATAACT 59.901 50.000 9.46 0.00 0.00 2.24
3572 6441 3.692576 CGACTCACTACCGGAATAACTG 58.307 50.000 9.46 0.00 0.00 3.16
3573 6442 3.128242 CGACTCACTACCGGAATAACTGT 59.872 47.826 9.46 0.00 0.00 3.55
3574 6443 4.670347 GACTCACTACCGGAATAACTGTC 58.330 47.826 9.46 4.42 0.00 3.51
3575 6444 4.342359 ACTCACTACCGGAATAACTGTCT 58.658 43.478 9.46 0.00 0.00 3.41
3576 6445 5.503927 ACTCACTACCGGAATAACTGTCTA 58.496 41.667 9.46 0.00 0.00 2.59
3577 6446 6.127793 ACTCACTACCGGAATAACTGTCTAT 58.872 40.000 9.46 0.00 0.00 1.98
3578 6447 6.039493 ACTCACTACCGGAATAACTGTCTATG 59.961 42.308 9.46 0.00 0.00 2.23
3579 6448 4.982916 CACTACCGGAATAACTGTCTATGC 59.017 45.833 9.46 0.00 0.00 3.14
3580 6449 3.470645 ACCGGAATAACTGTCTATGCC 57.529 47.619 9.46 0.00 0.00 4.40
3581 6450 2.223971 ACCGGAATAACTGTCTATGCCG 60.224 50.000 9.46 16.22 46.35 5.69
3584 6453 3.050619 GGAATAACTGTCTATGCCGACG 58.949 50.000 0.00 0.00 36.71 5.12
3585 6454 2.795175 ATAACTGTCTATGCCGACGG 57.205 50.000 10.29 10.29 44.11 4.79
3618 6487 4.050934 CGGCTTTTTGTCGGGGCC 62.051 66.667 0.00 0.00 40.56 5.80
3619 6488 4.050934 GGCTTTTTGTCGGGGCCG 62.051 66.667 0.00 0.00 41.35 6.13
3620 6489 3.292159 GCTTTTTGTCGGGGCCGT 61.292 61.111 0.00 0.00 40.74 5.68
3621 6490 2.951458 CTTTTTGTCGGGGCCGTC 59.049 61.111 0.00 0.00 40.74 4.79
3622 6491 2.961669 CTTTTTGTCGGGGCCGTCG 61.962 63.158 10.39 10.39 40.74 5.12
3623 6492 4.992511 TTTTGTCGGGGCCGTCGG 62.993 66.667 6.99 6.99 40.74 4.79
3640 6509 3.071580 GGCATAGCCGGAGATATGC 57.928 57.895 26.33 26.33 45.62 3.14
3641 6510 3.071580 GCATAGCCGGAGATATGCC 57.928 57.895 24.98 13.72 42.82 4.40
3642 6511 0.539051 GCATAGCCGGAGATATGCCT 59.461 55.000 24.98 7.20 42.82 4.75
3643 6512 1.757118 GCATAGCCGGAGATATGCCTA 59.243 52.381 24.98 8.94 42.82 3.93
3644 6513 2.168521 GCATAGCCGGAGATATGCCTAA 59.831 50.000 24.98 0.00 42.82 2.69
3645 6514 3.739519 GCATAGCCGGAGATATGCCTAAG 60.740 52.174 24.98 7.21 42.82 2.18
3646 6515 1.270907 AGCCGGAGATATGCCTAAGG 58.729 55.000 5.05 0.00 0.00 2.69
3657 6526 2.873797 GCCTAAGGCCCACAGAAAG 58.126 57.895 0.00 0.00 44.06 2.62
3658 6527 1.315981 GCCTAAGGCCCACAGAAAGC 61.316 60.000 0.00 0.00 44.06 3.51
3662 6531 3.056328 GGCCCACAGAAAGCCGTC 61.056 66.667 0.00 0.00 36.84 4.79
3663 6532 3.423154 GCCCACAGAAAGCCGTCG 61.423 66.667 0.00 0.00 0.00 5.12
3664 6533 2.742372 CCCACAGAAAGCCGTCGG 60.742 66.667 6.99 6.99 0.00 4.79
3675 6544 2.028190 CCGTCGGCATAGCTGGAG 59.972 66.667 0.00 0.00 35.34 3.86
3676 6545 2.490148 CCGTCGGCATAGCTGGAGA 61.490 63.158 0.00 0.00 35.34 3.71
3677 6546 1.662608 CGTCGGCATAGCTGGAGAT 59.337 57.895 0.00 0.00 35.34 2.75
3678 6547 0.881796 CGTCGGCATAGCTGGAGATA 59.118 55.000 0.00 0.00 35.34 1.98
3679 6548 1.474478 CGTCGGCATAGCTGGAGATAT 59.526 52.381 0.00 0.00 35.34 1.63
3680 6549 2.733542 CGTCGGCATAGCTGGAGATATG 60.734 54.545 7.43 7.43 44.65 1.78
3687 6556 4.958509 CATAGCTGGAGATATGCCTATGG 58.041 47.826 0.00 0.00 37.55 2.74
3714 6583 2.014594 GGCATAGAAAAGCCGTCGG 58.985 57.895 6.99 6.99 41.70 4.79
3731 6600 6.561737 CCGTCGGCATATCTCTATATATGT 57.438 41.667 0.00 0.00 40.49 2.29
3732 6601 6.604012 CCGTCGGCATATCTCTATATATGTC 58.396 44.000 0.00 0.00 40.49 3.06
3737 6606 6.604012 GGCATATCTCTATATATGTCGACGG 58.396 44.000 11.62 0.00 40.49 4.79
3738 6607 6.081049 GCATATCTCTATATATGTCGACGGC 58.919 44.000 11.62 0.00 40.49 5.68
3739 6608 6.293462 GCATATCTCTATATATGTCGACGGCA 60.293 42.308 3.85 3.85 40.49 5.69
3740 6609 5.743026 ATCTCTATATATGTCGACGGCAG 57.257 43.478 8.62 2.37 0.00 4.85
3741 6610 3.374367 TCTCTATATATGTCGACGGCAGC 59.626 47.826 8.62 0.00 0.00 5.25
3742 6611 2.422479 TCTATATATGTCGACGGCAGCC 59.578 50.000 8.62 0.00 0.00 4.85
3759 6628 1.658673 CCGTAGGCATAGGACGACC 59.341 63.158 0.00 0.00 46.14 4.79
3760 6629 1.281960 CGTAGGCATAGGACGACCG 59.718 63.158 0.00 0.00 41.83 4.79
3761 6630 1.442526 CGTAGGCATAGGACGACCGT 61.443 60.000 0.00 0.00 41.83 4.83
3762 6631 0.310232 GTAGGCATAGGACGACCGTC 59.690 60.000 13.56 13.56 43.87 4.79
3763 6632 1.162181 TAGGCATAGGACGACCGTCG 61.162 60.000 19.24 19.24 45.41 5.12
3764 6633 2.025727 GCATAGGACGACCGTCGG 59.974 66.667 24.03 10.48 45.59 4.79
3771 6640 2.796651 ACGACCGTCGGCATAGAC 59.203 61.111 24.03 0.00 45.59 2.59
3772 6641 2.042259 ACGACCGTCGGCATAGACA 61.042 57.895 24.03 0.00 45.59 3.41
3773 6642 1.359117 CGACCGTCGGCATAGACAT 59.641 57.895 12.28 0.00 40.98 3.06
3774 6643 0.934901 CGACCGTCGGCATAGACATG 60.935 60.000 12.28 0.00 40.98 3.21
3775 6644 0.597637 GACCGTCGGCATAGACATGG 60.598 60.000 12.28 3.75 40.98 3.66
3781 6650 3.736483 GCATAGACATGGCCGTGG 58.264 61.111 28.37 11.56 32.36 4.94
3782 6651 2.546494 GCATAGACATGGCCGTGGC 61.546 63.158 28.37 26.57 41.06 5.01
3783 6652 2.108976 ATAGACATGGCCGTGGCG 59.891 61.111 28.37 4.44 43.06 5.69
3784 6653 2.731571 ATAGACATGGCCGTGGCGT 61.732 57.895 28.37 17.16 43.06 5.68
3785 6654 2.644555 ATAGACATGGCCGTGGCGTC 62.645 60.000 28.37 16.84 43.06 5.19
3800 6669 4.383861 GTCCCCGGGGTTGACGAC 62.384 72.222 38.73 24.53 36.47 4.34
3807 6676 3.998672 GGGTTGACGACGGGCTGA 61.999 66.667 0.00 0.00 0.00 4.26
3808 6677 2.737376 GGTTGACGACGGGCTGAC 60.737 66.667 0.00 0.00 0.00 3.51
3809 6678 3.103911 GTTGACGACGGGCTGACG 61.104 66.667 16.27 16.27 41.56 4.35
3820 6689 3.044305 GCTGACGCCGTCAAAGCT 61.044 61.111 21.56 0.00 42.26 3.74
3821 6690 1.736645 GCTGACGCCGTCAAAGCTA 60.737 57.895 21.56 0.00 42.26 3.32
3822 6691 1.084370 GCTGACGCCGTCAAAGCTAT 61.084 55.000 21.56 0.00 42.26 2.97
3823 6692 0.647410 CTGACGCCGTCAAAGCTATG 59.353 55.000 21.56 3.65 42.26 2.23
3824 6693 1.348594 GACGCCGTCAAAGCTATGC 59.651 57.895 13.23 0.00 32.09 3.14
3825 6694 2.036764 GACGCCGTCAAAGCTATGCC 62.037 60.000 13.23 0.00 32.09 4.40
3826 6695 2.709475 GCCGTCAAAGCTATGCCG 59.291 61.111 0.00 0.00 0.00 5.69
3827 6696 1.813753 GCCGTCAAAGCTATGCCGA 60.814 57.895 0.00 0.00 0.00 5.54
3828 6697 2.006772 CCGTCAAAGCTATGCCGAC 58.993 57.895 0.00 0.00 0.00 4.79
3829 6698 1.631072 CGTCAAAGCTATGCCGACG 59.369 57.895 10.61 10.61 38.85 5.12
3830 6699 1.752501 CGTCAAAGCTATGCCGACGG 61.753 60.000 10.29 10.29 40.19 4.79
3859 6728 4.996788 GGGGACCGTCGACATATATTAT 57.003 45.455 17.16 0.00 40.86 1.28
3860 6729 4.929781 GGGGACCGTCGACATATATTATC 58.070 47.826 17.16 0.59 40.86 1.75
3861 6730 4.643784 GGGGACCGTCGACATATATTATCT 59.356 45.833 17.16 0.00 40.86 1.98
3862 6731 5.126707 GGGGACCGTCGACATATATTATCTT 59.873 44.000 17.16 0.00 40.86 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 3.135994 CTGCTGCAAGGAAAAAGCAATT 58.864 40.909 3.02 0.00 44.52 2.32
141 142 1.151221 TCCCTTTCAGCTGCTGCAA 59.849 52.632 24.38 18.87 42.74 4.08
294 589 9.403583 ACAAGGTCTTCAGTAAAAATCTAACAA 57.596 29.630 0.00 0.00 0.00 2.83
879 2897 9.528018 AAAACGAGAACAAATTCAAATGTGTAT 57.472 25.926 0.00 0.00 35.84 2.29
936 2954 3.460825 ACAGGGTAATTAAGAGAGGGCA 58.539 45.455 0.00 0.00 0.00 5.36
955 2973 3.636300 CCCAACTGACTCCATTCAAAACA 59.364 43.478 0.00 0.00 0.00 2.83
1086 3104 1.152030 TCCCTTGTGCAGGTCTCCT 60.152 57.895 0.00 0.00 42.02 3.69
1269 3287 6.453092 GCAAGAACTGGTTACTACAGAGTAA 58.547 40.000 0.00 0.00 44.27 2.24
1411 3452 8.506168 TTCGTAGATGCCTAAATTCATCTTTT 57.494 30.769 11.39 0.00 44.96 2.27
1669 3721 3.179443 TCTGAATCTCATACGGCAACC 57.821 47.619 0.00 0.00 0.00 3.77
1815 3899 7.752518 ATAAGAGAGCATATCATGGGATTCT 57.247 36.000 0.00 0.00 34.89 2.40
1851 3935 2.617788 GGTGTCCAGTATGTTGATGCCA 60.618 50.000 0.00 0.00 0.00 4.92
1966 4051 5.682943 TGCATTCAGTAGTAACAACCAAC 57.317 39.130 0.00 0.00 0.00 3.77
2137 4222 5.011329 ACAACAAATGGATTCAGAAGCATGT 59.989 36.000 0.00 0.00 0.00 3.21
2187 4284 7.877612 CCAGAAATTTTGGTGGCTAAAGTTATT 59.122 33.333 9.82 0.00 0.00 1.40
2260 4360 6.607198 ACACTTTCCTTTATAATGGGACCATG 59.393 38.462 15.44 8.71 36.68 3.66
2643 5452 4.346970 TGTGCGTTTATGAACACAACAAG 58.653 39.130 0.95 0.00 39.91 3.16
2702 5514 4.946478 ATGGTTACCTGTCTGCTATCTC 57.054 45.455 2.07 0.00 0.00 2.75
2877 5690 2.897436 TCGAAGATGCATCTCACAAGG 58.103 47.619 28.83 14.17 35.76 3.61
2950 5763 1.076024 AGAACAACAGGGATGGCATGT 59.924 47.619 3.81 0.00 0.00 3.21
2981 5801 8.877779 CCTCTTTCTCTAAATTACATGTCTGTG 58.122 37.037 0.00 0.00 36.79 3.66
2982 5802 8.043710 CCCTCTTTCTCTAAATTACATGTCTGT 58.956 37.037 0.00 0.00 39.49 3.41
3407 6276 2.436115 GGTAGGTGGCCGCACTTC 60.436 66.667 19.98 10.35 0.00 3.01
3484 6353 0.107897 ACGCACACACCAGTTTCTGA 60.108 50.000 0.00 0.00 32.44 3.27
3485 6354 0.732571 AACGCACACACCAGTTTCTG 59.267 50.000 0.00 0.00 0.00 3.02
3486 6355 1.937899 GTAACGCACACACCAGTTTCT 59.062 47.619 0.00 0.00 0.00 2.52
3487 6356 1.332552 CGTAACGCACACACCAGTTTC 60.333 52.381 0.00 0.00 0.00 2.78
3488 6357 0.653636 CGTAACGCACACACCAGTTT 59.346 50.000 0.00 0.00 0.00 2.66
3489 6358 1.155424 CCGTAACGCACACACCAGTT 61.155 55.000 0.00 0.00 0.00 3.16
3490 6359 1.593209 CCGTAACGCACACACCAGT 60.593 57.895 0.00 0.00 0.00 4.00
3491 6360 1.300311 TCCGTAACGCACACACCAG 60.300 57.895 0.00 0.00 0.00 4.00
3492 6361 1.592131 GTCCGTAACGCACACACCA 60.592 57.895 0.00 0.00 0.00 4.17
3493 6362 2.312436 GGTCCGTAACGCACACACC 61.312 63.158 0.00 0.00 0.00 4.16
3494 6363 2.651137 CGGTCCGTAACGCACACAC 61.651 63.158 2.08 0.00 0.00 3.82
3495 6364 2.354891 CGGTCCGTAACGCACACA 60.355 61.111 2.08 0.00 0.00 3.72
3531 6400 3.508840 CTTCCCCGTTGCCGATGC 61.509 66.667 0.00 0.00 35.63 3.91
3532 6401 2.824041 CCTTCCCCGTTGCCGATG 60.824 66.667 0.00 0.00 35.63 3.84
3533 6402 4.109675 CCCTTCCCCGTTGCCGAT 62.110 66.667 0.00 0.00 35.63 4.18
3538 6407 3.952628 GAGTCGCCCTTCCCCGTTG 62.953 68.421 0.00 0.00 0.00 4.10
3539 6408 3.703127 GAGTCGCCCTTCCCCGTT 61.703 66.667 0.00 0.00 0.00 4.44
3541 6410 4.452733 GTGAGTCGCCCTTCCCCG 62.453 72.222 0.00 0.00 0.00 5.73
3542 6411 1.684734 TAGTGAGTCGCCCTTCCCC 60.685 63.158 0.00 0.00 0.00 4.81
3543 6412 1.516423 GTAGTGAGTCGCCCTTCCC 59.484 63.158 0.00 0.00 0.00 3.97
3544 6413 1.516423 GGTAGTGAGTCGCCCTTCC 59.484 63.158 0.00 0.00 0.00 3.46
3545 6414 1.139095 CGGTAGTGAGTCGCCCTTC 59.861 63.158 0.00 0.00 0.00 3.46
3546 6415 2.348888 CCGGTAGTGAGTCGCCCTT 61.349 63.158 0.00 0.00 0.00 3.95
3547 6416 2.754658 CCGGTAGTGAGTCGCCCT 60.755 66.667 0.00 0.00 0.00 5.19
3548 6417 1.673808 ATTCCGGTAGTGAGTCGCCC 61.674 60.000 0.00 0.00 0.00 6.13
3549 6418 1.027357 TATTCCGGTAGTGAGTCGCC 58.973 55.000 0.00 0.00 0.00 5.54
3550 6419 2.098770 AGTTATTCCGGTAGTGAGTCGC 59.901 50.000 0.00 0.00 0.00 5.19
3551 6420 3.128242 ACAGTTATTCCGGTAGTGAGTCG 59.872 47.826 0.00 0.00 0.00 4.18
3552 6421 4.398673 AGACAGTTATTCCGGTAGTGAGTC 59.601 45.833 0.00 3.49 0.00 3.36
3553 6422 4.342359 AGACAGTTATTCCGGTAGTGAGT 58.658 43.478 0.00 0.00 0.00 3.41
3554 6423 4.985538 AGACAGTTATTCCGGTAGTGAG 57.014 45.455 0.00 0.00 0.00 3.51
3555 6424 5.221185 GCATAGACAGTTATTCCGGTAGTGA 60.221 44.000 0.00 0.00 0.00 3.41
3556 6425 4.982916 GCATAGACAGTTATTCCGGTAGTG 59.017 45.833 0.00 1.74 0.00 2.74
3557 6426 4.038883 GGCATAGACAGTTATTCCGGTAGT 59.961 45.833 0.00 0.00 0.00 2.73
3558 6427 4.557205 GGCATAGACAGTTATTCCGGTAG 58.443 47.826 0.00 0.00 0.00 3.18
3559 6428 3.005050 CGGCATAGACAGTTATTCCGGTA 59.995 47.826 0.00 0.00 36.57 4.02
3560 6429 2.223971 CGGCATAGACAGTTATTCCGGT 60.224 50.000 0.00 0.00 36.57 5.28
3561 6430 2.035449 TCGGCATAGACAGTTATTCCGG 59.965 50.000 0.00 0.00 39.35 5.14
3562 6431 3.050619 GTCGGCATAGACAGTTATTCCG 58.949 50.000 7.18 7.18 39.95 4.30
3563 6432 3.050619 CGTCGGCATAGACAGTTATTCC 58.949 50.000 6.94 0.00 40.98 3.01
3564 6433 3.050619 CCGTCGGCATAGACAGTTATTC 58.949 50.000 0.00 0.00 40.98 1.75
3565 6434 3.093717 CCGTCGGCATAGACAGTTATT 57.906 47.619 0.00 0.00 40.98 1.40
3566 6435 2.795175 CCGTCGGCATAGACAGTTAT 57.205 50.000 0.00 0.00 40.98 1.89
3599 6468 2.951458 CCCCGACAAAAAGCCGTC 59.049 61.111 0.00 0.00 0.00 4.79
3600 6469 3.292159 GCCCCGACAAAAAGCCGT 61.292 61.111 0.00 0.00 0.00 5.68
3601 6470 4.050934 GGCCCCGACAAAAAGCCG 62.051 66.667 0.00 0.00 33.18 5.52
3602 6471 4.050934 CGGCCCCGACAAAAAGCC 62.051 66.667 0.00 0.00 42.83 4.35
3603 6472 3.263503 GACGGCCCCGACAAAAAGC 62.264 63.158 14.44 0.00 42.83 3.51
3604 6473 2.951458 GACGGCCCCGACAAAAAG 59.049 61.111 14.44 0.00 42.83 2.27
3605 6474 2.973600 CGACGGCCCCGACAAAAA 60.974 61.111 14.44 0.00 42.83 1.94
3606 6475 4.992511 CCGACGGCCCCGACAAAA 62.993 66.667 14.44 0.00 42.83 2.44
3622 6491 3.071580 GCATATCTCCGGCTATGCC 57.928 57.895 22.67 11.61 42.76 4.40
3623 6492 0.539051 AGGCATATCTCCGGCTATGC 59.461 55.000 24.05 24.05 46.08 3.14
3624 6493 3.181471 CCTTAGGCATATCTCCGGCTATG 60.181 52.174 0.00 5.38 39.69 2.23
3625 6494 3.034635 CCTTAGGCATATCTCCGGCTAT 58.965 50.000 0.00 0.00 39.69 2.97
3626 6495 2.457598 CCTTAGGCATATCTCCGGCTA 58.542 52.381 0.00 0.00 39.09 3.93
3627 6496 1.270907 CCTTAGGCATATCTCCGGCT 58.729 55.000 0.00 0.00 41.51 5.52
3628 6497 3.842869 CCTTAGGCATATCTCCGGC 57.157 57.895 0.00 0.00 0.00 6.13
3640 6509 0.681243 GGCTTTCTGTGGGCCTTAGG 60.681 60.000 4.53 0.00 42.31 2.69
3641 6510 1.026718 CGGCTTTCTGTGGGCCTTAG 61.027 60.000 4.53 2.87 43.29 2.18
3642 6511 1.002624 CGGCTTTCTGTGGGCCTTA 60.003 57.895 4.53 0.00 43.29 2.69
3643 6512 2.282462 CGGCTTTCTGTGGGCCTT 60.282 61.111 4.53 0.00 43.29 4.35
3644 6513 3.553095 GACGGCTTTCTGTGGGCCT 62.553 63.158 4.53 0.00 43.29 5.19
3645 6514 3.056328 GACGGCTTTCTGTGGGCC 61.056 66.667 0.00 0.00 42.18 5.80
3646 6515 3.423154 CGACGGCTTTCTGTGGGC 61.423 66.667 0.00 0.00 30.45 5.36
3647 6516 2.742372 CCGACGGCTTTCTGTGGG 60.742 66.667 0.00 0.00 40.35 4.61
3648 6517 3.423154 GCCGACGGCTTTCTGTGG 61.423 66.667 31.30 0.00 46.69 4.17
3658 6527 1.810606 ATCTCCAGCTATGCCGACGG 61.811 60.000 10.29 10.29 0.00 4.79
3659 6528 0.881796 TATCTCCAGCTATGCCGACG 59.118 55.000 0.00 0.00 0.00 5.12
3660 6529 2.886081 CATATCTCCAGCTATGCCGAC 58.114 52.381 0.00 0.00 0.00 4.79
3661 6530 1.205655 GCATATCTCCAGCTATGCCGA 59.794 52.381 10.17 0.00 41.63 5.54
3662 6531 1.649664 GCATATCTCCAGCTATGCCG 58.350 55.000 10.17 0.00 41.63 5.69
3664 6533 4.378774 CATAGGCATATCTCCAGCTATGC 58.621 47.826 12.18 12.18 44.75 3.14
3665 6534 4.958509 CCATAGGCATATCTCCAGCTATG 58.041 47.826 0.00 0.00 0.00 2.23
3681 6550 2.031163 GCCTACGGCTGCCATAGG 59.969 66.667 31.20 31.20 46.69 2.57
3691 6560 1.217882 CGGCTTTTCTATGCCTACGG 58.782 55.000 0.00 0.00 46.42 4.02
3692 6561 1.859080 GACGGCTTTTCTATGCCTACG 59.141 52.381 0.00 0.00 46.42 3.51
3693 6562 1.859080 CGACGGCTTTTCTATGCCTAC 59.141 52.381 0.00 0.00 46.42 3.18
3694 6563 1.202486 CCGACGGCTTTTCTATGCCTA 60.202 52.381 0.00 0.00 46.42 3.93
3695 6564 0.462047 CCGACGGCTTTTCTATGCCT 60.462 55.000 0.00 0.00 46.42 4.75
3696 6565 2.014594 CCGACGGCTTTTCTATGCC 58.985 57.895 0.00 0.00 45.25 4.40
3697 6566 1.352056 GCCGACGGCTTTTCTATGC 59.648 57.895 31.30 0.14 46.69 3.14
3707 6576 9.868127 CGACATATATAGAGATATGCCGACGGC 62.868 48.148 31.85 31.85 43.96 5.68
3708 6577 6.561737 ACATATATAGAGATATGCCGACGG 57.438 41.667 10.29 10.29 41.60 4.79
3709 6578 6.145696 TCGACATATATAGAGATATGCCGACG 59.854 42.308 10.29 8.42 44.49 5.12
3710 6579 7.422878 TCGACATATATAGAGATATGCCGAC 57.577 40.000 10.29 0.00 44.49 4.79
3711 6580 6.145696 CGTCGACATATATAGAGATATGCCGA 59.854 42.308 17.16 10.29 46.02 5.54
3712 6581 6.300356 CGTCGACATATATAGAGATATGCCG 58.700 44.000 17.16 6.54 43.15 5.69
3713 6582 6.604012 CCGTCGACATATATAGAGATATGCC 58.396 44.000 17.16 0.00 41.60 4.40
3714 6583 6.081049 GCCGTCGACATATATAGAGATATGC 58.919 44.000 17.16 0.00 41.60 3.14
3715 6584 7.190920 TGCCGTCGACATATATAGAGATATG 57.809 40.000 17.16 3.20 42.93 1.78
3716 6585 6.072948 GCTGCCGTCGACATATATAGAGATAT 60.073 42.308 17.16 0.00 32.76 1.63
3717 6586 5.236695 GCTGCCGTCGACATATATAGAGATA 59.763 44.000 17.16 0.00 0.00 1.98
3718 6587 4.035792 GCTGCCGTCGACATATATAGAGAT 59.964 45.833 17.16 0.00 0.00 2.75
3719 6588 3.374367 GCTGCCGTCGACATATATAGAGA 59.626 47.826 17.16 0.00 0.00 3.10
3720 6589 3.487711 GGCTGCCGTCGACATATATAGAG 60.488 52.174 17.16 0.66 0.00 2.43
3721 6590 2.422479 GGCTGCCGTCGACATATATAGA 59.578 50.000 17.16 0.00 0.00 1.98
3722 6591 2.791503 CGGCTGCCGTCGACATATATAG 60.792 54.545 31.72 5.72 41.73 1.31
3723 6592 1.131693 CGGCTGCCGTCGACATATATA 59.868 52.381 31.72 0.00 41.73 0.86
3724 6593 0.109272 CGGCTGCCGTCGACATATAT 60.109 55.000 31.72 0.00 41.73 0.86
3725 6594 1.284715 CGGCTGCCGTCGACATATA 59.715 57.895 31.72 0.00 41.73 0.86
3726 6595 2.027605 CGGCTGCCGTCGACATAT 59.972 61.111 31.72 0.00 41.73 1.78
3741 6610 1.658673 GGTCGTCCTATGCCTACGG 59.341 63.158 0.00 0.00 37.24 4.02
3742 6611 1.281960 CGGTCGTCCTATGCCTACG 59.718 63.158 0.00 0.00 37.96 3.51
3743 6612 0.310232 GACGGTCGTCCTATGCCTAC 59.690 60.000 11.96 0.00 39.08 3.18
3744 6613 1.162181 CGACGGTCGTCCTATGCCTA 61.162 60.000 21.68 0.00 41.76 3.93
3745 6614 2.478890 CGACGGTCGTCCTATGCCT 61.479 63.158 21.68 0.00 41.76 4.75
3746 6615 2.025727 CGACGGTCGTCCTATGCC 59.974 66.667 21.68 0.00 41.76 4.40
3747 6616 2.025727 CCGACGGTCGTCCTATGC 59.974 66.667 26.72 0.00 41.76 3.14
3748 6617 2.025727 GCCGACGGTCGTCCTATG 59.974 66.667 26.72 12.86 41.76 2.23
3749 6618 0.535780 TATGCCGACGGTCGTCCTAT 60.536 55.000 26.72 17.03 41.76 2.57
3750 6619 1.153188 TATGCCGACGGTCGTCCTA 60.153 57.895 26.72 10.80 41.76 2.94
3751 6620 2.438975 TATGCCGACGGTCGTCCT 60.439 61.111 26.72 11.83 41.76 3.85
3752 6621 2.025727 CTATGCCGACGGTCGTCC 59.974 66.667 26.72 18.01 41.76 4.79
3753 6622 1.298190 GTCTATGCCGACGGTCGTC 60.298 63.158 26.72 16.95 38.40 4.20
3754 6623 1.381928 ATGTCTATGCCGACGGTCGT 61.382 55.000 26.72 12.86 38.40 4.34
3755 6624 0.934901 CATGTCTATGCCGACGGTCG 60.935 60.000 22.88 22.88 40.07 4.79
3756 6625 0.597637 CCATGTCTATGCCGACGGTC 60.598 60.000 16.73 8.54 36.71 4.79
3757 6626 1.441729 CCATGTCTATGCCGACGGT 59.558 57.895 16.73 0.00 36.71 4.83
3758 6627 1.956170 GCCATGTCTATGCCGACGG 60.956 63.158 10.29 10.29 36.71 4.79
3759 6628 1.956170 GGCCATGTCTATGCCGACG 60.956 63.158 0.00 0.00 36.71 5.12
3760 6629 1.956170 CGGCCATGTCTATGCCGAC 60.956 63.158 22.95 0.00 46.98 4.79
3761 6630 2.421314 CGGCCATGTCTATGCCGA 59.579 61.111 22.95 0.00 46.98 5.54
3763 6632 1.893808 CCACGGCCATGTCTATGCC 60.894 63.158 2.24 0.17 32.79 4.40
3764 6633 2.546494 GCCACGGCCATGTCTATGC 61.546 63.158 2.24 0.00 32.79 3.14
3765 6634 2.246739 CGCCACGGCCATGTCTATG 61.247 63.158 2.24 0.00 37.98 2.23
3766 6635 2.108976 CGCCACGGCCATGTCTAT 59.891 61.111 2.24 0.00 37.98 1.98
3767 6636 3.365291 GACGCCACGGCCATGTCTA 62.365 63.158 2.24 0.00 37.98 2.59
3768 6637 4.760047 GACGCCACGGCCATGTCT 62.760 66.667 2.24 0.00 37.98 3.41
3783 6652 4.383861 GTCGTCAACCCCGGGGAC 62.384 72.222 46.68 31.39 38.96 4.46
3790 6659 3.998672 TCAGCCCGTCGTCAACCC 61.999 66.667 0.00 0.00 0.00 4.11
3791 6660 2.737376 GTCAGCCCGTCGTCAACC 60.737 66.667 0.00 0.00 0.00 3.77
3792 6661 3.103911 CGTCAGCCCGTCGTCAAC 61.104 66.667 0.00 0.00 0.00 3.18
3803 6672 1.084370 ATAGCTTTGACGGCGTCAGC 61.084 55.000 36.94 35.15 43.69 4.26
3804 6673 0.647410 CATAGCTTTGACGGCGTCAG 59.353 55.000 36.94 28.63 43.69 3.51
3805 6674 1.358725 GCATAGCTTTGACGGCGTCA 61.359 55.000 36.29 36.29 41.09 4.35
3806 6675 1.348594 GCATAGCTTTGACGGCGTC 59.651 57.895 31.68 31.68 34.52 5.19
3807 6676 2.106683 GGCATAGCTTTGACGGCGT 61.107 57.895 14.65 14.65 34.52 5.68
3808 6677 2.709475 GGCATAGCTTTGACGGCG 59.291 61.111 4.80 4.80 34.52 6.46
3809 6678 2.036764 GTCGGCATAGCTTTGACGGC 62.037 60.000 28.51 25.02 46.63 5.68
3812 6681 2.006772 CCGTCGGCATAGCTTTGAC 58.993 57.895 8.49 3.86 0.00 3.18
3813 6682 4.513519 CCGTCGGCATAGCTTTGA 57.486 55.556 8.49 0.00 0.00 2.69
3838 6707 4.643784 AGATAATATATGTCGACGGTCCCC 59.356 45.833 11.62 0.00 0.00 4.81
3839 6708 5.831702 AGATAATATATGTCGACGGTCCC 57.168 43.478 11.62 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.