Multiple sequence alignment - TraesCS3B01G105200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G105200 chr3B 100.000 5429 0 0 1 5429 71392282 71397710 0.000000e+00 10026
1 TraesCS3B01G105200 chr3D 91.437 3305 183 49 171 3411 45751256 45754524 0.000000e+00 4444
2 TraesCS3B01G105200 chr3D 91.419 1142 61 15 3405 4529 45754624 45755745 0.000000e+00 1531
3 TraesCS3B01G105200 chr3D 88.136 354 19 10 5072 5421 45756136 45756470 3.050000e-107 399
4 TraesCS3B01G105200 chr3D 87.500 352 22 12 4595 4939 45755748 45756084 2.370000e-103 387
5 TraesCS3B01G105200 chr3D 92.090 177 11 1 2 178 45726975 45727148 4.200000e-61 246
6 TraesCS3B01G105200 chr3A 89.776 2191 155 44 2598 4762 57262611 57264758 0.000000e+00 2741
7 TraesCS3B01G105200 chr3A 88.664 1826 117 42 172 1949 57259954 57261737 0.000000e+00 2143
8 TraesCS3B01G105200 chr3A 96.667 330 11 0 1954 2283 57261826 57262155 2.860000e-152 549
9 TraesCS3B01G105200 chr3A 93.631 314 16 4 2278 2588 57262233 57262545 2.960000e-127 466
10 TraesCS3B01G105200 chr3A 94.286 70 4 0 4763 4832 57269261 57269330 2.070000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G105200 chr3B 71392282 71397710 5428 False 10026.00 10026 100.0000 1 5429 1 chr3B.!!$F1 5428
1 TraesCS3B01G105200 chr3D 45751256 45756470 5214 False 1690.25 4444 89.6230 171 5421 4 chr3D.!!$F2 5250
2 TraesCS3B01G105200 chr3A 57259954 57264758 4804 False 1474.75 2741 92.1845 172 4762 4 chr3A.!!$F2 4590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.112218 TGACAAGGGTTGGATGGTGG 59.888 55.0 0.00 0.0 34.12 4.61 F
1035 1054 0.033601 ACAGCTCCACCAAACCAACA 60.034 50.0 0.00 0.0 0.00 3.33 F
1394 1415 0.108138 GGTACCTGCAATCGAGCACT 60.108 55.0 4.06 0.0 40.11 4.40 F
1737 1765 0.463620 ATGCGCTTTTGGGTTGTGTT 59.536 45.0 9.73 0.0 34.56 3.32 F
2610 2889 0.514691 GCTACGCTATGCTTGATGGC 59.485 55.0 0.00 0.0 35.22 4.40 F
3566 3982 0.607489 AGCTCATTTCGTGCAAGCCT 60.607 50.0 0.76 0.0 36.55 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1491 0.165944 CCACGCGAAATCAACACTCC 59.834 55.000 15.93 0.0 0.00 3.85 R
2864 3164 1.270550 CATGTTTTCCTGAGGCCACAC 59.729 52.381 5.01 0.0 0.00 3.82 R
2869 3169 3.319122 ACAAGTTCATGTTTTCCTGAGGC 59.681 43.478 0.00 0.0 0.00 4.70 R
2981 3281 4.079253 GCCCAACAAAACCTAGAGAATGA 58.921 43.478 0.00 0.0 0.00 2.57 R
3943 4360 0.458669 GCATGCTGATTTCAGGTGGG 59.541 55.000 11.37 0.0 43.94 4.61 R
5045 5486 0.033306 TTGCCTGCCAATCTGCCATA 60.033 50.000 0.00 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.746279 TGGTGATTGTGACAAGGGTT 57.254 45.000 3.74 0.00 0.00 4.11
20 21 2.305928 TGGTGATTGTGACAAGGGTTG 58.694 47.619 3.74 0.00 0.00 3.77
21 22 1.613437 GGTGATTGTGACAAGGGTTGG 59.387 52.381 3.74 0.00 34.12 3.77
22 23 2.582052 GTGATTGTGACAAGGGTTGGA 58.418 47.619 3.74 0.00 34.12 3.53
23 24 3.157087 GTGATTGTGACAAGGGTTGGAT 58.843 45.455 3.74 0.00 34.12 3.41
24 25 3.057315 GTGATTGTGACAAGGGTTGGATG 60.057 47.826 3.74 0.00 34.12 3.51
25 26 1.993956 TTGTGACAAGGGTTGGATGG 58.006 50.000 0.00 0.00 34.12 3.51
26 27 0.850100 TGTGACAAGGGTTGGATGGT 59.150 50.000 0.00 0.00 34.12 3.55
27 28 1.247567 GTGACAAGGGTTGGATGGTG 58.752 55.000 0.00 0.00 34.12 4.17
28 29 0.112218 TGACAAGGGTTGGATGGTGG 59.888 55.000 0.00 0.00 34.12 4.61
29 30 0.112412 GACAAGGGTTGGATGGTGGT 59.888 55.000 0.00 0.00 34.12 4.16
30 31 0.178964 ACAAGGGTTGGATGGTGGTG 60.179 55.000 0.00 0.00 34.12 4.17
31 32 0.112218 CAAGGGTTGGATGGTGGTGA 59.888 55.000 0.00 0.00 0.00 4.02
32 33 1.084018 AAGGGTTGGATGGTGGTGAT 58.916 50.000 0.00 0.00 0.00 3.06
33 34 0.332632 AGGGTTGGATGGTGGTGATG 59.667 55.000 0.00 0.00 0.00 3.07
34 35 0.684153 GGGTTGGATGGTGGTGATGG 60.684 60.000 0.00 0.00 0.00 3.51
35 36 0.331278 GGTTGGATGGTGGTGATGGA 59.669 55.000 0.00 0.00 0.00 3.41
36 37 1.683011 GGTTGGATGGTGGTGATGGAG 60.683 57.143 0.00 0.00 0.00 3.86
37 38 0.625316 TTGGATGGTGGTGATGGAGG 59.375 55.000 0.00 0.00 0.00 4.30
38 39 1.152881 GGATGGTGGTGATGGAGGC 60.153 63.158 0.00 0.00 0.00 4.70
39 40 1.639635 GGATGGTGGTGATGGAGGCT 61.640 60.000 0.00 0.00 0.00 4.58
40 41 1.131638 GATGGTGGTGATGGAGGCTA 58.868 55.000 0.00 0.00 0.00 3.93
41 42 1.071385 GATGGTGGTGATGGAGGCTAG 59.929 57.143 0.00 0.00 0.00 3.42
42 43 0.982852 TGGTGGTGATGGAGGCTAGG 60.983 60.000 0.00 0.00 0.00 3.02
43 44 0.691078 GGTGGTGATGGAGGCTAGGA 60.691 60.000 0.00 0.00 0.00 2.94
44 45 1.428869 GTGGTGATGGAGGCTAGGAT 58.571 55.000 0.00 0.00 0.00 3.24
45 46 1.071385 GTGGTGATGGAGGCTAGGATG 59.929 57.143 0.00 0.00 0.00 3.51
46 47 0.689623 GGTGATGGAGGCTAGGATGG 59.310 60.000 0.00 0.00 0.00 3.51
47 48 0.689623 GTGATGGAGGCTAGGATGGG 59.310 60.000 0.00 0.00 0.00 4.00
48 49 0.474466 TGATGGAGGCTAGGATGGGG 60.474 60.000 0.00 0.00 0.00 4.96
49 50 1.846712 GATGGAGGCTAGGATGGGGC 61.847 65.000 0.00 0.00 0.00 5.80
50 51 2.122189 GGAGGCTAGGATGGGGCT 60.122 66.667 0.00 0.00 41.04 5.19
51 52 2.524204 GGAGGCTAGGATGGGGCTG 61.524 68.421 0.00 0.00 38.46 4.85
52 53 2.449322 AGGCTAGGATGGGGCTGG 60.449 66.667 0.00 0.00 36.98 4.85
53 54 4.277009 GGCTAGGATGGGGCTGGC 62.277 72.222 0.00 0.00 0.00 4.85
54 55 4.277009 GCTAGGATGGGGCTGGCC 62.277 72.222 12.58 12.58 0.00 5.36
77 78 3.070576 GGCAACCATGGCCCACTC 61.071 66.667 13.04 0.00 45.87 3.51
78 79 2.036256 GCAACCATGGCCCACTCT 59.964 61.111 13.04 0.00 0.00 3.24
79 80 2.048603 GCAACCATGGCCCACTCTC 61.049 63.158 13.04 0.00 0.00 3.20
80 81 1.379044 CAACCATGGCCCACTCTCC 60.379 63.158 13.04 0.00 0.00 3.71
81 82 1.542375 AACCATGGCCCACTCTCCT 60.542 57.895 13.04 0.00 0.00 3.69
82 83 1.142688 AACCATGGCCCACTCTCCTT 61.143 55.000 13.04 0.00 0.00 3.36
83 84 1.077212 CCATGGCCCACTCTCCTTG 60.077 63.158 0.00 0.00 0.00 3.61
84 85 1.565390 CCATGGCCCACTCTCCTTGA 61.565 60.000 0.00 0.00 31.37 3.02
85 86 0.329261 CATGGCCCACTCTCCTTGAA 59.671 55.000 0.00 0.00 31.37 2.69
86 87 1.064166 CATGGCCCACTCTCCTTGAAT 60.064 52.381 0.00 0.00 31.37 2.57
87 88 1.075601 TGGCCCACTCTCCTTGAATT 58.924 50.000 0.00 0.00 0.00 2.17
88 89 1.272092 TGGCCCACTCTCCTTGAATTG 60.272 52.381 0.00 0.00 0.00 2.32
89 90 1.004745 GGCCCACTCTCCTTGAATTGA 59.995 52.381 0.00 0.00 0.00 2.57
90 91 2.555227 GGCCCACTCTCCTTGAATTGAA 60.555 50.000 0.00 0.00 0.00 2.69
91 92 3.157087 GCCCACTCTCCTTGAATTGAAA 58.843 45.455 0.00 0.00 0.00 2.69
92 93 3.057245 GCCCACTCTCCTTGAATTGAAAC 60.057 47.826 0.00 0.00 0.00 2.78
93 94 4.401925 CCCACTCTCCTTGAATTGAAACT 58.598 43.478 0.00 0.00 0.00 2.66
94 95 4.457257 CCCACTCTCCTTGAATTGAAACTC 59.543 45.833 0.00 0.00 0.00 3.01
95 96 5.065914 CCACTCTCCTTGAATTGAAACTCA 58.934 41.667 0.00 0.00 0.00 3.41
96 97 5.709164 CCACTCTCCTTGAATTGAAACTCAT 59.291 40.000 0.00 0.00 0.00 2.90
97 98 6.208204 CCACTCTCCTTGAATTGAAACTCATT 59.792 38.462 0.00 0.00 0.00 2.57
98 99 7.255730 CCACTCTCCTTGAATTGAAACTCATTT 60.256 37.037 0.00 0.00 0.00 2.32
99 100 8.786898 CACTCTCCTTGAATTGAAACTCATTTA 58.213 33.333 0.00 0.00 0.00 1.40
100 101 9.525826 ACTCTCCTTGAATTGAAACTCATTTAT 57.474 29.630 0.00 0.00 0.00 1.40
103 104 8.761575 TCCTTGAATTGAAACTCATTTATTGC 57.238 30.769 0.00 0.00 0.00 3.56
104 105 8.366401 TCCTTGAATTGAAACTCATTTATTGCA 58.634 29.630 0.00 0.00 0.00 4.08
105 106 9.158233 CCTTGAATTGAAACTCATTTATTGCAT 57.842 29.630 0.00 0.00 0.00 3.96
106 107 9.967245 CTTGAATTGAAACTCATTTATTGCATG 57.033 29.630 0.00 0.00 0.00 4.06
107 108 8.481974 TGAATTGAAACTCATTTATTGCATGG 57.518 30.769 0.00 0.00 0.00 3.66
108 109 8.095792 TGAATTGAAACTCATTTATTGCATGGT 58.904 29.630 0.00 0.00 0.00 3.55
109 110 9.585099 GAATTGAAACTCATTTATTGCATGGTA 57.415 29.630 0.00 0.00 0.00 3.25
110 111 9.941325 AATTGAAACTCATTTATTGCATGGTAA 57.059 25.926 0.00 0.00 0.00 2.85
111 112 8.984891 TTGAAACTCATTTATTGCATGGTAAG 57.015 30.769 0.00 0.00 0.00 2.34
112 113 7.546358 TGAAACTCATTTATTGCATGGTAAGG 58.454 34.615 0.00 0.00 0.00 2.69
113 114 7.178274 TGAAACTCATTTATTGCATGGTAAGGT 59.822 33.333 0.00 0.00 0.00 3.50
114 115 6.699575 ACTCATTTATTGCATGGTAAGGTC 57.300 37.500 0.00 0.00 0.00 3.85
115 116 6.186957 ACTCATTTATTGCATGGTAAGGTCA 58.813 36.000 0.00 0.00 0.00 4.02
116 117 6.835488 ACTCATTTATTGCATGGTAAGGTCAT 59.165 34.615 0.00 0.00 0.00 3.06
117 118 7.013655 ACTCATTTATTGCATGGTAAGGTCATC 59.986 37.037 0.00 0.00 0.00 2.92
118 119 6.265196 TCATTTATTGCATGGTAAGGTCATCC 59.735 38.462 0.00 0.00 0.00 3.51
119 120 2.036958 TTGCATGGTAAGGTCATCCG 57.963 50.000 0.00 0.00 39.05 4.18
120 121 1.199615 TGCATGGTAAGGTCATCCGA 58.800 50.000 0.00 0.00 39.05 4.55
121 122 1.557371 TGCATGGTAAGGTCATCCGAA 59.443 47.619 0.00 0.00 39.05 4.30
122 123 2.026729 TGCATGGTAAGGTCATCCGAAA 60.027 45.455 0.00 0.00 39.05 3.46
123 124 3.214328 GCATGGTAAGGTCATCCGAAAT 58.786 45.455 0.00 0.00 39.05 2.17
124 125 3.003689 GCATGGTAAGGTCATCCGAAATG 59.996 47.826 0.00 0.00 39.05 2.32
125 126 3.275617 TGGTAAGGTCATCCGAAATGG 57.724 47.619 0.00 0.00 39.05 3.16
140 141 7.989416 TCCGAAATGGAACACTTAAAATACT 57.011 32.000 0.00 0.00 46.38 2.12
142 143 9.158233 TCCGAAATGGAACACTTAAAATACTAG 57.842 33.333 0.00 0.00 46.38 2.57
164 165 9.883142 ACTAGATTCTTGAGTTCAAAATCCTAG 57.117 33.333 16.87 15.19 35.15 3.02
165 166 9.883142 CTAGATTCTTGAGTTCAAAATCCTAGT 57.117 33.333 16.87 8.56 35.15 2.57
166 167 8.785329 AGATTCTTGAGTTCAAAATCCTAGTC 57.215 34.615 16.87 0.00 35.15 2.59
167 168 8.378565 AGATTCTTGAGTTCAAAATCCTAGTCA 58.621 33.333 16.87 0.00 35.15 3.41
168 169 9.171877 GATTCTTGAGTTCAAAATCCTAGTCAT 57.828 33.333 13.14 0.00 35.15 3.06
169 170 8.924511 TTCTTGAGTTCAAAATCCTAGTCATT 57.075 30.769 0.00 0.00 35.15 2.57
232 233 4.365723 TGACGTTTAACTTCCAGTCAGAC 58.634 43.478 0.00 0.00 34.24 3.51
291 292 7.826918 AGGCACCACTAAAATGTTAGTTTTA 57.173 32.000 5.50 0.00 46.38 1.52
298 301 7.593644 CCACTAAAATGTTAGTTTTAGCACACC 59.406 37.037 5.50 0.00 46.38 4.16
390 393 8.376203 CAACATATACATAAGCGTTCTAGCATC 58.624 37.037 0.00 0.00 40.15 3.91
397 401 6.711194 ACATAAGCGTTCTAGCATCTAGTAGA 59.289 38.462 1.45 1.45 40.15 2.59
437 441 2.550978 TCGAGCGATGAAGGAAATTCC 58.449 47.619 3.29 3.29 37.08 3.01
481 485 1.268992 TGCCCCTATAACGTGCACCT 61.269 55.000 12.15 0.73 0.00 4.00
497 501 0.843984 ACCTTAGCACAACACCTGGT 59.156 50.000 0.00 0.00 0.00 4.00
528 532 8.852135 TGTTCCGATTTTACAAGTTTTATCCTT 58.148 29.630 0.00 0.00 0.00 3.36
558 563 1.398692 ATGTCCTTTTTGGCACACGT 58.601 45.000 0.00 0.00 39.29 4.49
614 619 6.861065 TTTTATTCCTCAGTTGTCAGTGAC 57.139 37.500 16.68 16.68 0.00 3.67
629 634 4.034510 GTCAGTGACCAGTTCTTCAAAGTG 59.965 45.833 12.54 0.00 0.00 3.16
642 647 8.632679 AGTTCTTCAAAGTGCATGATTTTCTTA 58.367 29.630 0.00 0.00 0.00 2.10
652 657 9.590451 AGTGCATGATTTTCTTAAAATACATGG 57.410 29.630 22.03 13.36 40.97 3.66
698 705 6.403049 TCTTCCATAAGCACGATCACTTTTA 58.597 36.000 0.00 0.00 32.36 1.52
866 878 2.255252 CTTGTTTTGGGCCGAGCG 59.745 61.111 0.00 0.00 0.00 5.03
877 889 2.095252 GCCGAGCGAGTTCCAGTTC 61.095 63.158 0.00 0.00 0.00 3.01
891 903 1.795286 CCAGTTCACGCAGAGAAGAAC 59.205 52.381 0.00 0.00 37.87 3.01
948 960 4.717313 GTTCGAGCCCACCCCACC 62.717 72.222 0.00 0.00 0.00 4.61
969 981 2.682136 TCGTTCCATGGGCCGAGA 60.682 61.111 18.75 7.23 0.00 4.04
971 983 2.106683 CGTTCCATGGGCCGAGAAC 61.107 63.158 13.02 18.18 36.19 3.01
975 987 2.438434 CATGGGCCGAGAACACCC 60.438 66.667 0.00 0.00 44.52 4.61
1029 1048 2.844451 GCGCAACAGCTCCACCAAA 61.844 57.895 0.30 0.00 0.00 3.28
1035 1054 0.033601 ACAGCTCCACCAAACCAACA 60.034 50.000 0.00 0.00 0.00 3.33
1165 1186 1.671054 GCAAGCGTGCCTGGTAAGA 60.671 57.895 14.16 0.00 45.68 2.10
1179 1200 0.458716 GTAAGACAGCAGACCGGAGC 60.459 60.000 9.46 9.60 0.00 4.70
1394 1415 0.108138 GGTACCTGCAATCGAGCACT 60.108 55.000 4.06 0.00 40.11 4.40
1453 1480 0.984230 AATTCGGGTTGAGCCAGAGA 59.016 50.000 0.00 0.00 42.27 3.10
1489 1516 1.136057 GTTGATTTCGCGTGGAAGGTC 60.136 52.381 5.77 0.00 35.70 3.85
1634 1661 3.239861 CCTGCTCAGGTCACCTTTC 57.760 57.895 7.75 0.00 43.61 2.62
1666 1693 2.177394 TGTTTGCCAGCATCGTCTTA 57.823 45.000 0.00 0.00 0.00 2.10
1677 1704 4.790140 CAGCATCGTCTTATTTTGCTTGTC 59.210 41.667 0.00 0.00 41.47 3.18
1682 1709 4.515191 TCGTCTTATTTTGCTTGTCTTGCT 59.485 37.500 0.00 0.00 0.00 3.91
1683 1710 4.614284 CGTCTTATTTTGCTTGTCTTGCTG 59.386 41.667 0.00 0.00 0.00 4.41
1684 1711 4.383948 GTCTTATTTTGCTTGTCTTGCTGC 59.616 41.667 0.00 0.00 0.00 5.25
1685 1712 2.159327 ATTTTGCTTGTCTTGCTGCC 57.841 45.000 0.00 0.00 0.00 4.85
1715 1742 2.176273 GCCGGTAGCTGTGCTGATG 61.176 63.158 1.90 0.00 40.10 3.07
1729 1756 0.996462 CTGATGCAATGCGCTTTTGG 59.004 50.000 20.18 7.24 43.06 3.28
1737 1765 0.463620 ATGCGCTTTTGGGTTGTGTT 59.536 45.000 9.73 0.00 34.56 3.32
1785 1813 2.435372 TGTCAACCTGAGCCTTGTTT 57.565 45.000 0.00 0.00 0.00 2.83
1821 1849 4.021104 TCAAGACTGAAGTGGTATGAGTGG 60.021 45.833 0.00 0.00 0.00 4.00
1929 1983 3.633525 GGGACTCCAAAACCGTTTAAGTT 59.366 43.478 0.00 0.00 0.00 2.66
1956 2094 8.715191 TCTTTTACCAGTAAGAAAACACGTAA 57.285 30.769 0.00 0.00 0.00 3.18
1959 2097 5.978934 ACCAGTAAGAAAACACGTAACAG 57.021 39.130 0.00 0.00 0.00 3.16
1967 2105 9.136952 GTAAGAAAACACGTAACAGATCTGTAT 57.863 33.333 28.10 19.23 44.13 2.29
2011 2149 5.578727 GCACTTCTGTAGATCTGTTTACCTG 59.421 44.000 5.18 0.00 0.00 4.00
2308 2529 2.094675 ACCATACCGTTAGTACACGCT 58.905 47.619 0.00 0.00 38.93 5.07
2319 2540 2.285083 AGTACACGCTTTTTGCTCACA 58.715 42.857 0.00 0.00 40.11 3.58
2324 2545 4.290155 ACACGCTTTTTGCTCACATTTAG 58.710 39.130 0.00 0.00 40.11 1.85
2332 2553 3.641437 TGCTCACATTTAGTTGCAACC 57.359 42.857 25.62 8.37 35.19 3.77
2335 2556 3.857010 GCTCACATTTAGTTGCAACCACC 60.857 47.826 25.62 0.77 0.00 4.61
2439 2661 5.201243 AGTAGTGTATGACCATGCTCTGTA 58.799 41.667 11.18 0.00 31.55 2.74
2448 2671 2.171448 ACCATGCTCTGTACCTTCATCC 59.829 50.000 0.00 0.00 0.00 3.51
2481 2704 9.403583 ACAAACTTTTATCTTACCAAGTTCTCA 57.596 29.630 0.00 0.00 38.28 3.27
2610 2889 0.514691 GCTACGCTATGCTTGATGGC 59.485 55.000 0.00 0.00 35.22 4.40
2623 2902 3.818180 CTTGATGGCTCCTTCTAGCATT 58.182 45.455 0.00 0.00 44.64 3.56
2842 3142 9.956640 AGATATTTGCCATTTTACATGGAAAAA 57.043 25.926 19.49 14.05 46.58 1.94
2934 3234 1.561542 CTTGGGAAGTGGCTAGATGGT 59.438 52.381 0.00 0.00 0.00 3.55
3003 3303 4.079253 TCATTCTCTAGGTTTTGTTGGGC 58.921 43.478 0.00 0.00 0.00 5.36
3151 3452 7.691993 ATTATACCCAGTATATCACATCCCC 57.308 40.000 0.00 0.00 32.08 4.81
3394 3704 7.119116 CAGTTGTTACATGCTAGAATTGTGGTA 59.881 37.037 0.00 0.00 0.00 3.25
3397 3707 7.812648 TGTTACATGCTAGAATTGTGGTAAAC 58.187 34.615 0.00 0.00 0.00 2.01
3412 3722 9.935241 ATTGTGGTAAACATATGCATGTAAAAA 57.065 25.926 10.16 0.00 44.83 1.94
3456 3872 8.475639 TCTAAACTGTATGGTTCTTCCTGATAC 58.524 37.037 0.00 0.00 37.07 2.24
3457 3873 6.875972 AACTGTATGGTTCTTCCTGATACT 57.124 37.500 0.00 0.00 37.07 2.12
3458 3874 6.875972 ACTGTATGGTTCTTCCTGATACTT 57.124 37.500 0.00 0.00 37.07 2.24
3513 3929 3.517500 AGGTGGTTTGTTCCATTTTGTGT 59.482 39.130 0.00 0.00 39.81 3.72
3566 3982 0.607489 AGCTCATTTCGTGCAAGCCT 60.607 50.000 0.76 0.00 36.55 4.58
3614 4030 5.444745 GCGTATGTTGACTCTAAAGCTTGAC 60.445 44.000 0.00 0.00 0.00 3.18
3769 4185 8.520351 ACATTACCAGTTTTATTCTTGGTAAGC 58.480 33.333 16.97 0.00 42.69 3.09
3790 4206 2.035626 CCCATCACCACCACCACC 59.964 66.667 0.00 0.00 0.00 4.61
3930 4346 2.271944 AAGGTAAGGCAACACACTCC 57.728 50.000 0.00 0.00 41.41 3.85
3933 4349 1.071699 GGTAAGGCAACACACTCCTCA 59.928 52.381 0.00 0.00 41.41 3.86
3935 4351 2.191128 AAGGCAACACACTCCTCATC 57.809 50.000 0.00 0.00 41.41 2.92
3939 4355 2.616256 GGCAACACACTCCTCATCATCA 60.616 50.000 0.00 0.00 0.00 3.07
3943 4360 5.675575 GCAACACACTCCTCATCATCATTTC 60.676 44.000 0.00 0.00 0.00 2.17
3950 4367 3.117776 TCCTCATCATCATTTCCCACCTG 60.118 47.826 0.00 0.00 0.00 4.00
3959 4376 2.673775 TTTCCCACCTGAAATCAGCA 57.326 45.000 4.87 0.00 42.47 4.41
3963 4380 1.471119 CCACCTGAAATCAGCATGCT 58.529 50.000 16.30 16.30 42.47 3.79
3964 4381 2.646930 CCACCTGAAATCAGCATGCTA 58.353 47.619 22.19 9.59 42.47 3.49
3965 4382 2.617308 CCACCTGAAATCAGCATGCTAG 59.383 50.000 22.19 12.95 42.47 3.42
3966 4383 3.276857 CACCTGAAATCAGCATGCTAGT 58.723 45.455 22.19 9.18 42.47 2.57
3995 4424 9.685276 AAATCACTCATGGTCATGTTTATAGAA 57.315 29.630 10.32 0.00 39.72 2.10
4008 4437 7.828717 TCATGTTTATAGAATGCTTCTGTTCCA 59.171 33.333 8.21 2.11 40.94 3.53
4020 4449 0.037303 CTGTTCCATGAGGCACCAGT 59.963 55.000 0.00 0.00 29.00 4.00
4027 4456 2.947652 CCATGAGGCACCAGTATCTTTG 59.052 50.000 0.00 0.00 0.00 2.77
4045 4474 4.408596 TCTTTGCATCCTTTTTCCACCTTT 59.591 37.500 0.00 0.00 0.00 3.11
4097 4526 7.308435 AGCTGTTTGAACAAATTACTCATAGC 58.692 34.615 3.34 0.00 38.66 2.97
4100 4529 9.760660 CTGTTTGAACAAATTACTCATAGCTAC 57.239 33.333 0.00 0.00 38.66 3.58
4117 4546 4.520179 AGCTACGGGTTTAGGGTAAATTG 58.480 43.478 0.00 0.00 0.00 2.32
4126 4555 9.176460 CGGGTTTAGGGTAAATTGTAATAGAAA 57.824 33.333 0.00 0.00 0.00 2.52
4170 4599 8.737168 TTGAAGATTATATGTGTTTCTCCAGG 57.263 34.615 0.00 0.00 0.00 4.45
4179 4608 0.402121 GTTTCTCCAGGGGTGCTTCT 59.598 55.000 0.00 0.00 0.00 2.85
4180 4609 1.149101 TTTCTCCAGGGGTGCTTCTT 58.851 50.000 0.00 0.00 0.00 2.52
4291 4722 4.382793 GCTGGAACGTTTATCCTTCTACCT 60.383 45.833 0.46 0.00 37.85 3.08
4359 4790 1.826024 CCTATGGAGTTCGCCTGCT 59.174 57.895 0.00 0.00 31.70 4.24
4373 4804 0.394565 CCTGCTGAGTACCCCTATGC 59.605 60.000 0.00 0.00 0.00 3.14
4375 4806 0.326143 TGCTGAGTACCCCTATGCCA 60.326 55.000 0.00 0.00 0.00 4.92
4398 4829 1.328279 AAAAGGAAAAGGCGGACAGG 58.672 50.000 0.00 0.00 0.00 4.00
4399 4830 0.539669 AAAGGAAAAGGCGGACAGGG 60.540 55.000 0.00 0.00 0.00 4.45
4400 4831 1.423794 AAGGAAAAGGCGGACAGGGA 61.424 55.000 0.00 0.00 0.00 4.20
4401 4832 1.377333 GGAAAAGGCGGACAGGGAG 60.377 63.158 0.00 0.00 0.00 4.30
4402 4833 1.677552 GAAAAGGCGGACAGGGAGA 59.322 57.895 0.00 0.00 0.00 3.71
4403 4834 0.391793 GAAAAGGCGGACAGGGAGAG 60.392 60.000 0.00 0.00 0.00 3.20
4449 4880 3.677156 AGCTTCCCTGCAGGATATTTT 57.323 42.857 34.91 11.80 46.94 1.82
4474 4905 6.923508 TGATCCTTTGATGTAGCAGTATTACG 59.076 38.462 0.00 0.00 0.00 3.18
4476 4907 6.869695 TCCTTTGATGTAGCAGTATTACGAA 58.130 36.000 0.00 0.00 0.00 3.85
4508 4942 3.245087 ACAGACAGCAGAGAGGTCTTCTA 60.245 47.826 0.00 0.00 39.75 2.10
4514 4948 8.001875 AGACAGCAGAGAGGTCTTCTATAAATA 58.998 37.037 0.00 0.00 38.69 1.40
4593 5027 7.279615 TCTTGATGTGAGTCCAAGTTTCTTAA 58.720 34.615 0.00 0.00 38.61 1.85
4600 5034 5.548056 TGAGTCCAAGTTTCTTAAGAGGGAT 59.452 40.000 5.12 0.00 0.00 3.85
4607 5041 8.049721 CCAAGTTTCTTAAGAGGGATATCTTGT 58.950 37.037 16.46 0.00 39.81 3.16
4615 5050 6.678568 AAGAGGGATATCTTGTCATACCAG 57.321 41.667 2.05 0.00 38.12 4.00
4633 5068 7.392953 TCATACCAGAGATGCAACATTTGTAAA 59.607 33.333 0.00 0.00 0.00 2.01
4666 5101 9.423061 GCATAGATGAAAACAGTTTTACCAAAT 57.577 29.630 11.38 1.26 31.94 2.32
4670 5105 9.362151 AGATGAAAACAGTTTTACCAAATAGGA 57.638 29.630 11.38 0.00 35.12 2.94
4671 5106 9.626045 GATGAAAACAGTTTTACCAAATAGGAG 57.374 33.333 11.38 0.00 35.12 3.69
4735 5171 2.528041 ACGGTCTCCTTGACTTGAAC 57.472 50.000 0.00 0.00 44.74 3.18
4736 5172 1.269621 ACGGTCTCCTTGACTTGAACG 60.270 52.381 0.00 0.00 44.74 3.95
4737 5173 1.000607 CGGTCTCCTTGACTTGAACGA 60.001 52.381 0.00 0.00 44.74 3.85
4738 5174 2.405172 GGTCTCCTTGACTTGAACGAC 58.595 52.381 0.00 0.00 44.74 4.34
4819 5259 4.925068 ACAAAAGCAGTTCATCAGTTGAC 58.075 39.130 0.00 0.00 32.84 3.18
4842 5282 4.096984 CCCAACATCTTCATAAGGCAGAAC 59.903 45.833 0.00 0.00 0.00 3.01
4911 5352 7.307930 CCCAACCTGAATTTTGAAATAAGCAAC 60.308 37.037 0.00 0.00 0.00 4.17
4913 5354 8.776470 CAACCTGAATTTTGAAATAAGCAACAT 58.224 29.630 0.00 0.00 0.00 2.71
4914 5355 8.314143 ACCTGAATTTTGAAATAAGCAACATG 57.686 30.769 0.00 0.00 0.00 3.21
4928 5369 6.822667 AAGCAACATGTGAAATGTATCTGA 57.177 33.333 0.00 0.00 0.00 3.27
4931 5372 5.514204 GCAACATGTGAAATGTATCTGAAGC 59.486 40.000 0.00 0.00 0.00 3.86
4939 5380 5.882557 TGAAATGTATCTGAAGCTCCCTTTC 59.117 40.000 0.00 0.00 0.00 2.62
4940 5381 3.526931 TGTATCTGAAGCTCCCTTTCG 57.473 47.619 0.00 0.00 0.00 3.46
4941 5382 2.205911 GTATCTGAAGCTCCCTTTCGC 58.794 52.381 0.00 0.00 0.00 4.70
4942 5383 0.107459 ATCTGAAGCTCCCTTTCGCC 60.107 55.000 0.00 0.00 0.00 5.54
4943 5384 1.746991 CTGAAGCTCCCTTTCGCCC 60.747 63.158 0.00 0.00 0.00 6.13
4944 5385 2.438614 GAAGCTCCCTTTCGCCCC 60.439 66.667 0.00 0.00 0.00 5.80
4945 5386 3.997400 GAAGCTCCCTTTCGCCCCC 62.997 68.421 0.00 0.00 0.00 5.40
4960 5401 1.975407 CCCCTTGACCTGCTTGCTG 60.975 63.158 0.00 0.00 0.00 4.41
4963 5404 0.595095 CCTTGACCTGCTTGCTGTTC 59.405 55.000 0.00 0.00 0.00 3.18
4965 5406 2.550855 CCTTGACCTGCTTGCTGTTCTA 60.551 50.000 0.00 0.00 0.00 2.10
4967 5408 2.703416 TGACCTGCTTGCTGTTCTATG 58.297 47.619 0.00 0.00 0.00 2.23
4969 5410 2.675348 GACCTGCTTGCTGTTCTATGTC 59.325 50.000 0.00 0.00 0.00 3.06
4970 5411 2.038952 ACCTGCTTGCTGTTCTATGTCA 59.961 45.455 0.00 0.00 0.00 3.58
4971 5412 3.276857 CCTGCTTGCTGTTCTATGTCAT 58.723 45.455 0.00 0.00 0.00 3.06
4972 5413 3.693085 CCTGCTTGCTGTTCTATGTCATT 59.307 43.478 0.00 0.00 0.00 2.57
4973 5414 4.157289 CCTGCTTGCTGTTCTATGTCATTT 59.843 41.667 0.00 0.00 0.00 2.32
4974 5415 5.336213 CCTGCTTGCTGTTCTATGTCATTTT 60.336 40.000 0.00 0.00 0.00 1.82
4975 5416 6.088016 TGCTTGCTGTTCTATGTCATTTTT 57.912 33.333 0.00 0.00 0.00 1.94
4977 5418 6.016024 TGCTTGCTGTTCTATGTCATTTTTCT 60.016 34.615 0.00 0.00 0.00 2.52
4979 5420 7.383300 GCTTGCTGTTCTATGTCATTTTTCTTT 59.617 33.333 0.00 0.00 0.00 2.52
4980 5421 9.252962 CTTGCTGTTCTATGTCATTTTTCTTTT 57.747 29.630 0.00 0.00 0.00 2.27
5026 5467 6.478512 TTTTTGAGGTTTCTATGGCAGTTT 57.521 33.333 0.00 0.00 0.00 2.66
5027 5468 6.478512 TTTTGAGGTTTCTATGGCAGTTTT 57.521 33.333 0.00 0.00 0.00 2.43
5028 5469 6.478512 TTTGAGGTTTCTATGGCAGTTTTT 57.521 33.333 0.00 0.00 0.00 1.94
5054 5495 7.707624 TTTTTGAGTTGATTCTATGGCAGAT 57.292 32.000 0.00 0.00 31.77 2.90
5055 5496 7.707624 TTTTGAGTTGATTCTATGGCAGATT 57.292 32.000 0.00 0.00 31.77 2.40
5056 5497 6.688637 TTGAGTTGATTCTATGGCAGATTG 57.311 37.500 0.00 0.00 31.77 2.67
5057 5498 5.128205 TGAGTTGATTCTATGGCAGATTGG 58.872 41.667 0.00 0.00 31.77 3.16
5058 5499 3.887716 AGTTGATTCTATGGCAGATTGGC 59.112 43.478 0.00 0.00 44.03 4.52
5065 5506 3.379880 GGCAGATTGGCAGGCAAA 58.620 55.556 14.29 0.00 43.14 3.68
5066 5507 1.217244 GGCAGATTGGCAGGCAAAG 59.783 57.895 14.29 8.03 43.14 2.77
5067 5508 1.252904 GGCAGATTGGCAGGCAAAGA 61.253 55.000 14.29 0.00 43.14 2.52
5068 5509 0.108945 GCAGATTGGCAGGCAAAGAC 60.109 55.000 14.29 8.43 0.00 3.01
5069 5510 1.542492 CAGATTGGCAGGCAAAGACT 58.458 50.000 14.29 10.51 0.00 3.24
5070 5511 1.201647 CAGATTGGCAGGCAAAGACTG 59.798 52.381 14.29 17.57 42.51 3.51
5091 5532 3.006247 GGCTTGTCTTCTTCATGGACTC 58.994 50.000 0.00 0.00 0.00 3.36
5111 5552 0.537143 TGTCGCACAAGGCCTTTGAT 60.537 50.000 17.61 0.75 39.21 2.57
5117 5558 3.859386 CGCACAAGGCCTTTGATAAATTC 59.141 43.478 17.61 2.82 39.21 2.17
5141 5582 2.203280 CCACAAGGCCACAACCGA 60.203 61.111 5.01 0.00 33.69 4.69
5142 5583 2.260869 CCACAAGGCCACAACCGAG 61.261 63.158 5.01 0.00 33.69 4.63
5143 5584 2.594592 ACAAGGCCACAACCGAGC 60.595 61.111 5.01 0.00 33.69 5.03
5184 5625 0.501435 CACACTCGTTTCGTTCCGAC 59.499 55.000 0.00 0.00 34.89 4.79
5185 5626 0.383231 ACACTCGTTTCGTTCCGACT 59.617 50.000 0.00 0.00 34.89 4.18
5186 5627 1.202336 ACACTCGTTTCGTTCCGACTT 60.202 47.619 0.00 0.00 34.89 3.01
5187 5628 1.450905 CACTCGTTTCGTTCCGACTTC 59.549 52.381 0.00 0.00 34.89 3.01
5189 5630 0.661187 TCGTTTCGTTCCGACTTCCG 60.661 55.000 0.00 0.00 34.89 4.30
5190 5631 0.661187 CGTTTCGTTCCGACTTCCGA 60.661 55.000 0.00 0.00 41.76 4.55
5191 5632 1.490621 GTTTCGTTCCGACTTCCGAA 58.509 50.000 0.00 0.00 41.76 4.30
5192 5633 1.190984 GTTTCGTTCCGACTTCCGAAC 59.809 52.381 0.00 1.63 38.85 3.95
5193 5634 0.385029 TTCGTTCCGACTTCCGAACA 59.615 50.000 9.96 0.00 41.76 3.18
5194 5635 0.039798 TCGTTCCGACTTCCGAACAG 60.040 55.000 9.96 4.60 41.76 3.16
5195 5636 1.615107 CGTTCCGACTTCCGAACAGC 61.615 60.000 9.96 0.00 41.76 4.40
5196 5637 1.005394 TTCCGACTTCCGAACAGCC 60.005 57.895 0.00 0.00 41.76 4.85
5197 5638 1.750341 TTCCGACTTCCGAACAGCCA 61.750 55.000 0.00 0.00 41.76 4.75
5198 5639 2.027625 CCGACTTCCGAACAGCCAC 61.028 63.158 0.00 0.00 41.76 5.01
5199 5640 2.027625 CGACTTCCGAACAGCCACC 61.028 63.158 0.00 0.00 41.76 4.61
5200 5641 1.671379 GACTTCCGAACAGCCACCC 60.671 63.158 0.00 0.00 0.00 4.61
5201 5642 2.359975 CTTCCGAACAGCCACCCC 60.360 66.667 0.00 0.00 0.00 4.95
5202 5643 3.920093 CTTCCGAACAGCCACCCCC 62.920 68.421 0.00 0.00 0.00 5.40
5369 5812 1.827969 CAGGTTCCGTTCTCCATCTCT 59.172 52.381 0.00 0.00 0.00 3.10
5372 5815 2.498078 GGTTCCGTTCTCCATCTCTTCT 59.502 50.000 0.00 0.00 0.00 2.85
5377 5820 4.641094 TCCGTTCTCCATCTCTTCTCTAAC 59.359 45.833 0.00 0.00 0.00 2.34
5383 5828 4.200874 TCCATCTCTTCTCTAACTCCGTC 58.799 47.826 0.00 0.00 0.00 4.79
5386 5831 4.289238 TCTCTTCTCTAACTCCGTCTGT 57.711 45.455 0.00 0.00 0.00 3.41
5421 5866 0.387367 CCGTACGCTAGCATAGGCAG 60.387 60.000 16.45 0.00 44.61 4.85
5422 5867 0.387367 CGTACGCTAGCATAGGCAGG 60.387 60.000 16.45 0.00 44.61 4.85
5423 5868 0.667792 GTACGCTAGCATAGGCAGGC 60.668 60.000 16.45 4.26 44.61 4.85
5424 5869 1.112916 TACGCTAGCATAGGCAGGCA 61.113 55.000 16.45 0.00 44.61 4.75
5425 5870 1.667191 CGCTAGCATAGGCAGGCAG 60.667 63.158 16.45 2.56 44.61 4.85
5426 5871 1.449353 GCTAGCATAGGCAGGCAGT 59.551 57.895 10.63 0.00 44.61 4.40
5427 5872 0.883814 GCTAGCATAGGCAGGCAGTG 60.884 60.000 10.63 0.00 44.61 3.66
5428 5873 0.250209 CTAGCATAGGCAGGCAGTGG 60.250 60.000 0.67 0.00 44.61 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.305928 CAACCCTTGTCACAATCACCA 58.694 47.619 0.00 0.00 0.00 4.17
1 2 1.613437 CCAACCCTTGTCACAATCACC 59.387 52.381 0.00 0.00 0.00 4.02
2 3 2.582052 TCCAACCCTTGTCACAATCAC 58.418 47.619 0.00 0.00 0.00 3.06
3 4 3.156293 CATCCAACCCTTGTCACAATCA 58.844 45.455 0.00 0.00 0.00 2.57
4 5 2.493278 CCATCCAACCCTTGTCACAATC 59.507 50.000 0.00 0.00 0.00 2.67
5 6 2.158325 ACCATCCAACCCTTGTCACAAT 60.158 45.455 0.00 0.00 0.00 2.71
6 7 1.216678 ACCATCCAACCCTTGTCACAA 59.783 47.619 0.00 0.00 0.00 3.33
7 8 0.850100 ACCATCCAACCCTTGTCACA 59.150 50.000 0.00 0.00 0.00 3.58
8 9 1.247567 CACCATCCAACCCTTGTCAC 58.752 55.000 0.00 0.00 0.00 3.67
9 10 0.112218 CCACCATCCAACCCTTGTCA 59.888 55.000 0.00 0.00 0.00 3.58
10 11 0.112412 ACCACCATCCAACCCTTGTC 59.888 55.000 0.00 0.00 0.00 3.18
11 12 0.178964 CACCACCATCCAACCCTTGT 60.179 55.000 0.00 0.00 0.00 3.16
12 13 0.112218 TCACCACCATCCAACCCTTG 59.888 55.000 0.00 0.00 0.00 3.61
13 14 1.084018 ATCACCACCATCCAACCCTT 58.916 50.000 0.00 0.00 0.00 3.95
14 15 0.332632 CATCACCACCATCCAACCCT 59.667 55.000 0.00 0.00 0.00 4.34
15 16 0.684153 CCATCACCACCATCCAACCC 60.684 60.000 0.00 0.00 0.00 4.11
16 17 0.331278 TCCATCACCACCATCCAACC 59.669 55.000 0.00 0.00 0.00 3.77
17 18 1.683011 CCTCCATCACCACCATCCAAC 60.683 57.143 0.00 0.00 0.00 3.77
18 19 0.625316 CCTCCATCACCACCATCCAA 59.375 55.000 0.00 0.00 0.00 3.53
19 20 1.925285 GCCTCCATCACCACCATCCA 61.925 60.000 0.00 0.00 0.00 3.41
20 21 1.152881 GCCTCCATCACCACCATCC 60.153 63.158 0.00 0.00 0.00 3.51
21 22 1.071385 CTAGCCTCCATCACCACCATC 59.929 57.143 0.00 0.00 0.00 3.51
22 23 1.135094 CTAGCCTCCATCACCACCAT 58.865 55.000 0.00 0.00 0.00 3.55
23 24 0.982852 CCTAGCCTCCATCACCACCA 60.983 60.000 0.00 0.00 0.00 4.17
24 25 0.691078 TCCTAGCCTCCATCACCACC 60.691 60.000 0.00 0.00 0.00 4.61
25 26 1.071385 CATCCTAGCCTCCATCACCAC 59.929 57.143 0.00 0.00 0.00 4.16
26 27 1.427809 CATCCTAGCCTCCATCACCA 58.572 55.000 0.00 0.00 0.00 4.17
27 28 0.689623 CCATCCTAGCCTCCATCACC 59.310 60.000 0.00 0.00 0.00 4.02
28 29 0.689623 CCCATCCTAGCCTCCATCAC 59.310 60.000 0.00 0.00 0.00 3.06
29 30 0.474466 CCCCATCCTAGCCTCCATCA 60.474 60.000 0.00 0.00 0.00 3.07
30 31 1.846712 GCCCCATCCTAGCCTCCATC 61.847 65.000 0.00 0.00 0.00 3.51
31 32 1.849823 GCCCCATCCTAGCCTCCAT 60.850 63.158 0.00 0.00 0.00 3.41
32 33 2.448542 GCCCCATCCTAGCCTCCA 60.449 66.667 0.00 0.00 0.00 3.86
33 34 2.122189 AGCCCCATCCTAGCCTCC 60.122 66.667 0.00 0.00 0.00 4.30
34 35 2.524204 CCAGCCCCATCCTAGCCTC 61.524 68.421 0.00 0.00 0.00 4.70
35 36 2.449322 CCAGCCCCATCCTAGCCT 60.449 66.667 0.00 0.00 0.00 4.58
36 37 4.277009 GCCAGCCCCATCCTAGCC 62.277 72.222 0.00 0.00 0.00 3.93
37 38 4.277009 GGCCAGCCCCATCCTAGC 62.277 72.222 0.00 0.00 0.00 3.42
61 62 2.036256 AGAGTGGGCCATGGTTGC 59.964 61.111 10.70 0.00 0.00 4.17
62 63 1.379044 GGAGAGTGGGCCATGGTTG 60.379 63.158 10.70 0.00 0.00 3.77
63 64 1.142688 AAGGAGAGTGGGCCATGGTT 61.143 55.000 10.70 0.00 0.00 3.67
64 65 1.542375 AAGGAGAGTGGGCCATGGT 60.542 57.895 10.70 0.00 0.00 3.55
65 66 1.077212 CAAGGAGAGTGGGCCATGG 60.077 63.158 10.70 7.63 0.00 3.66
66 67 0.329261 TTCAAGGAGAGTGGGCCATG 59.671 55.000 10.70 1.22 0.00 3.66
67 68 1.302907 ATTCAAGGAGAGTGGGCCAT 58.697 50.000 10.70 0.00 0.00 4.40
68 69 1.075601 AATTCAAGGAGAGTGGGCCA 58.924 50.000 0.00 0.00 0.00 5.36
69 70 1.004745 TCAATTCAAGGAGAGTGGGCC 59.995 52.381 0.00 0.00 0.00 5.80
70 71 2.496899 TCAATTCAAGGAGAGTGGGC 57.503 50.000 0.00 0.00 0.00 5.36
71 72 4.401925 AGTTTCAATTCAAGGAGAGTGGG 58.598 43.478 0.00 0.00 0.00 4.61
72 73 5.065914 TGAGTTTCAATTCAAGGAGAGTGG 58.934 41.667 0.00 0.00 0.00 4.00
73 74 6.814506 ATGAGTTTCAATTCAAGGAGAGTG 57.185 37.500 0.00 0.00 0.00 3.51
74 75 7.830099 AAATGAGTTTCAATTCAAGGAGAGT 57.170 32.000 0.00 0.00 0.00 3.24
77 78 8.866956 GCAATAAATGAGTTTCAATTCAAGGAG 58.133 33.333 0.00 0.00 0.00 3.69
78 79 8.366401 TGCAATAAATGAGTTTCAATTCAAGGA 58.634 29.630 0.00 0.00 0.00 3.36
79 80 8.537049 TGCAATAAATGAGTTTCAATTCAAGG 57.463 30.769 0.00 0.00 0.00 3.61
80 81 9.967245 CATGCAATAAATGAGTTTCAATTCAAG 57.033 29.630 0.00 0.00 0.00 3.02
81 82 8.937884 CCATGCAATAAATGAGTTTCAATTCAA 58.062 29.630 0.00 0.00 0.00 2.69
82 83 8.095792 ACCATGCAATAAATGAGTTTCAATTCA 58.904 29.630 0.00 0.00 0.00 2.57
83 84 8.483307 ACCATGCAATAAATGAGTTTCAATTC 57.517 30.769 0.00 0.00 0.00 2.17
84 85 9.941325 TTACCATGCAATAAATGAGTTTCAATT 57.059 25.926 0.00 0.00 0.00 2.32
85 86 9.590451 CTTACCATGCAATAAATGAGTTTCAAT 57.410 29.630 0.00 0.00 0.00 2.57
86 87 8.034215 CCTTACCATGCAATAAATGAGTTTCAA 58.966 33.333 0.00 0.00 0.00 2.69
87 88 7.178274 ACCTTACCATGCAATAAATGAGTTTCA 59.822 33.333 0.00 0.00 0.00 2.69
88 89 7.547227 ACCTTACCATGCAATAAATGAGTTTC 58.453 34.615 0.00 0.00 0.00 2.78
89 90 7.178274 TGACCTTACCATGCAATAAATGAGTTT 59.822 33.333 0.00 0.00 0.00 2.66
90 91 6.663093 TGACCTTACCATGCAATAAATGAGTT 59.337 34.615 0.00 0.00 0.00 3.01
91 92 6.186957 TGACCTTACCATGCAATAAATGAGT 58.813 36.000 0.00 0.00 0.00 3.41
92 93 6.698008 TGACCTTACCATGCAATAAATGAG 57.302 37.500 0.00 0.00 0.00 2.90
93 94 6.265196 GGATGACCTTACCATGCAATAAATGA 59.735 38.462 0.00 0.00 33.37 2.57
94 95 6.449698 GGATGACCTTACCATGCAATAAATG 58.550 40.000 0.00 0.00 33.37 2.32
95 96 5.241506 CGGATGACCTTACCATGCAATAAAT 59.758 40.000 0.00 0.00 32.80 1.40
96 97 4.578516 CGGATGACCTTACCATGCAATAAA 59.421 41.667 0.00 0.00 32.80 1.40
97 98 4.133820 CGGATGACCTTACCATGCAATAA 58.866 43.478 0.00 0.00 32.80 1.40
98 99 3.389656 TCGGATGACCTTACCATGCAATA 59.610 43.478 0.00 0.00 32.80 1.90
99 100 2.172505 TCGGATGACCTTACCATGCAAT 59.827 45.455 0.00 0.00 32.80 3.56
100 101 1.557371 TCGGATGACCTTACCATGCAA 59.443 47.619 0.00 0.00 32.80 4.08
101 102 1.199615 TCGGATGACCTTACCATGCA 58.800 50.000 0.00 0.00 32.80 3.96
102 103 2.325583 TTCGGATGACCTTACCATGC 57.674 50.000 0.00 0.00 0.00 4.06
103 104 3.565482 CCATTTCGGATGACCTTACCATG 59.435 47.826 1.88 0.00 36.56 3.66
104 105 3.458118 TCCATTTCGGATGACCTTACCAT 59.542 43.478 1.88 0.00 39.64 3.55
105 106 2.841266 TCCATTTCGGATGACCTTACCA 59.159 45.455 1.88 0.00 39.64 3.25
106 107 3.553828 TCCATTTCGGATGACCTTACC 57.446 47.619 1.88 0.00 39.64 2.85
107 108 4.094442 GTGTTCCATTTCGGATGACCTTAC 59.906 45.833 1.88 0.00 45.80 2.34
108 109 4.019681 AGTGTTCCATTTCGGATGACCTTA 60.020 41.667 1.88 0.00 45.80 2.69
109 110 3.081804 GTGTTCCATTTCGGATGACCTT 58.918 45.455 1.88 0.00 45.80 3.50
110 111 2.305927 AGTGTTCCATTTCGGATGACCT 59.694 45.455 1.88 0.00 45.80 3.85
111 112 2.711542 AGTGTTCCATTTCGGATGACC 58.288 47.619 1.88 0.00 45.80 4.02
112 113 5.873179 TTAAGTGTTCCATTTCGGATGAC 57.127 39.130 1.88 0.00 45.80 3.06
113 114 6.885952 TTTTAAGTGTTCCATTTCGGATGA 57.114 33.333 1.88 0.00 45.80 2.92
114 115 8.458843 AGTATTTTAAGTGTTCCATTTCGGATG 58.541 33.333 0.00 0.00 45.80 3.51
115 116 8.575649 AGTATTTTAAGTGTTCCATTTCGGAT 57.424 30.769 0.00 0.00 45.80 4.18
116 117 7.989416 AGTATTTTAAGTGTTCCATTTCGGA 57.011 32.000 0.00 0.00 44.40 4.55
117 118 9.158233 TCTAGTATTTTAAGTGTTCCATTTCGG 57.842 33.333 0.00 0.00 0.00 4.30
138 139 9.883142 CTAGGATTTTGAACTCAAGAATCTAGT 57.117 33.333 17.30 0.00 37.15 2.57
139 140 9.883142 ACTAGGATTTTGAACTCAAGAATCTAG 57.117 33.333 17.30 15.88 37.15 2.43
140 141 9.877178 GACTAGGATTTTGAACTCAAGAATCTA 57.123 33.333 17.30 9.30 37.15 1.98
141 142 8.378565 TGACTAGGATTTTGAACTCAAGAATCT 58.621 33.333 17.30 8.88 37.15 2.40
142 143 8.553459 TGACTAGGATTTTGAACTCAAGAATC 57.447 34.615 13.35 13.35 37.15 2.52
143 144 9.525826 AATGACTAGGATTTTGAACTCAAGAAT 57.474 29.630 0.00 0.00 37.15 2.40
144 145 8.924511 AATGACTAGGATTTTGAACTCAAGAA 57.075 30.769 0.00 0.00 37.15 2.52
145 146 8.156820 TGAATGACTAGGATTTTGAACTCAAGA 58.843 33.333 0.00 0.00 37.15 3.02
146 147 8.327941 TGAATGACTAGGATTTTGAACTCAAG 57.672 34.615 0.00 0.00 37.15 3.02
147 148 7.939039 ACTGAATGACTAGGATTTTGAACTCAA 59.061 33.333 0.00 0.00 0.00 3.02
148 149 7.453393 ACTGAATGACTAGGATTTTGAACTCA 58.547 34.615 0.00 0.00 0.00 3.41
149 150 7.913674 ACTGAATGACTAGGATTTTGAACTC 57.086 36.000 0.00 0.00 0.00 3.01
150 151 8.571336 CAAACTGAATGACTAGGATTTTGAACT 58.429 33.333 0.00 0.00 0.00 3.01
151 152 8.352942 ACAAACTGAATGACTAGGATTTTGAAC 58.647 33.333 0.00 0.00 0.00 3.18
152 153 8.463930 ACAAACTGAATGACTAGGATTTTGAA 57.536 30.769 0.00 0.00 0.00 2.69
153 154 9.739276 ATACAAACTGAATGACTAGGATTTTGA 57.261 29.630 0.00 0.00 0.00 2.69
181 182 7.119387 CCAACCTCTAGTTTGGGAATAAATCT 58.881 38.462 10.83 0.00 36.18 2.40
195 196 1.623811 ACGTCAATGCCAACCTCTAGT 59.376 47.619 0.00 0.00 0.00 2.57
254 255 3.380320 AGTGGTGCCTAGACAACAAAAAC 59.620 43.478 0.00 0.00 39.41 2.43
306 309 9.477484 AATGTCATGACCTCGAGTATAAATTAC 57.523 33.333 22.85 0.86 0.00 1.89
318 321 5.399596 CGTCTATGTAAATGTCATGACCTCG 59.600 44.000 22.85 6.11 0.00 4.63
365 368 8.307483 AGATGCTAGAACGCTTATGTATATGTT 58.693 33.333 0.00 0.00 0.00 2.71
377 380 4.023536 GCTTCTACTAGATGCTAGAACGCT 60.024 45.833 14.07 0.00 40.85 5.07
390 393 4.870123 ATGCATCAGGAGCTTCTACTAG 57.130 45.455 0.00 0.00 0.00 2.57
397 401 5.798132 TCGATTTATATGCATCAGGAGCTT 58.202 37.500 0.19 0.00 0.00 3.74
497 501 4.710324 ACTTGTAAAATCGGAACAGGACA 58.290 39.130 0.00 0.00 0.00 4.02
499 503 6.702716 AAAACTTGTAAAATCGGAACAGGA 57.297 33.333 0.00 0.00 0.00 3.86
600 605 2.766263 AGAACTGGTCACTGACAACTGA 59.234 45.455 11.34 0.00 33.68 3.41
614 619 4.778534 ATCATGCACTTTGAAGAACTGG 57.221 40.909 0.00 0.00 0.00 4.00
684 691 7.432252 CCCTCATATTTTTAAAAGTGATCGTGC 59.568 37.037 6.23 0.00 0.00 5.34
698 705 5.903010 GGGGAAATGGTACCCTCATATTTTT 59.097 40.000 10.07 0.00 44.97 1.94
720 727 1.643310 AATGTCCATGTGTTTGGGGG 58.357 50.000 0.00 0.00 37.37 5.40
851 863 2.668212 CTCGCTCGGCCCAAAACA 60.668 61.111 0.00 0.00 0.00 2.83
866 878 1.000163 TCTCTGCGTGAACTGGAACTC 60.000 52.381 0.00 0.00 0.00 3.01
877 889 1.135859 GCCATTGTTCTTCTCTGCGTG 60.136 52.381 0.00 0.00 0.00 5.34
891 903 1.605202 CGTTTGGGTTTCAGGCCATTG 60.605 52.381 5.01 0.00 0.00 2.82
943 955 1.221840 CATGGAACGAGAGGGTGGG 59.778 63.158 0.00 0.00 0.00 4.61
944 956 1.221840 CCATGGAACGAGAGGGTGG 59.778 63.158 5.56 0.00 0.00 4.61
945 957 1.221840 CCCATGGAACGAGAGGGTG 59.778 63.158 15.22 0.00 34.75 4.61
946 958 2.670148 GCCCATGGAACGAGAGGGT 61.670 63.158 15.22 0.00 41.67 4.34
947 959 2.190578 GCCCATGGAACGAGAGGG 59.809 66.667 15.22 0.00 42.55 4.30
948 960 2.190578 GGCCCATGGAACGAGAGG 59.809 66.667 15.22 0.00 0.00 3.69
949 961 2.202932 CGGCCCATGGAACGAGAG 60.203 66.667 15.22 0.00 0.00 3.20
950 962 2.682136 TCGGCCCATGGAACGAGA 60.682 61.111 21.70 10.64 32.00 4.04
954 966 1.002624 TGTTCTCGGCCCATGGAAC 60.003 57.895 15.22 9.10 38.64 3.62
969 981 1.067354 CGCTCTTACGGTTAGGGTGTT 60.067 52.381 0.00 0.00 0.00 3.32
971 983 0.529378 ACGCTCTTACGGTTAGGGTG 59.471 55.000 6.07 6.07 35.37 4.61
975 987 2.850647 GCTTGTACGCTCTTACGGTTAG 59.149 50.000 0.00 0.00 37.37 2.34
1066 1086 3.160047 ATCCAGAGGCGGCTGAGG 61.160 66.667 19.63 18.24 38.14 3.86
1149 1170 0.320771 CTGTCTTACCAGGCACGCTT 60.321 55.000 0.00 0.00 29.07 4.68
1153 1174 0.321671 TCTGCTGTCTTACCAGGCAC 59.678 55.000 0.00 0.00 29.07 5.01
1154 1175 0.321671 GTCTGCTGTCTTACCAGGCA 59.678 55.000 0.00 0.00 31.79 4.75
1158 1179 0.541063 TCCGGTCTGCTGTCTTACCA 60.541 55.000 0.00 0.00 32.04 3.25
1161 1182 1.605058 GGCTCCGGTCTGCTGTCTTA 61.605 60.000 0.00 0.00 0.00 2.10
1267 1288 1.230182 GGAAAGAGGGGGAAGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
1453 1480 4.543590 ATCAACACTCCGAAGTCAGAAT 57.456 40.909 0.00 0.00 31.71 2.40
1464 1491 0.165944 CCACGCGAAATCAACACTCC 59.834 55.000 15.93 0.00 0.00 3.85
1489 1516 1.819632 CCCCTCCCGAAAAGCATCG 60.820 63.158 0.22 0.22 42.37 3.84
1634 1661 3.726607 TGGCAAACAAATTTAGCACTGG 58.273 40.909 0.00 0.00 0.00 4.00
1666 1693 1.603678 CGGCAGCAAGACAAGCAAAAT 60.604 47.619 0.00 0.00 0.00 1.82
1715 1742 0.879839 ACAACCCAAAAGCGCATTGC 60.880 50.000 11.47 0.00 46.98 3.56
1729 1756 3.715628 ACAGAATCTGCAAACACAACC 57.284 42.857 10.62 0.00 34.37 3.77
1737 1765 0.602638 ACGCCGAACAGAATCTGCAA 60.603 50.000 10.62 0.00 34.37 4.08
1785 1813 2.543848 CAGTCTTGACGTAAAGCAGCAA 59.456 45.455 7.89 0.00 0.00 3.91
1821 1849 6.664515 TGTGAAACTAACGTCATCAATTTCC 58.335 36.000 0.00 0.00 38.04 3.13
1863 1913 6.377327 TCCTCATTGAACTGAACAAAAGAC 57.623 37.500 0.00 0.00 0.00 3.01
1865 1915 8.571336 AGTTATCCTCATTGAACTGAACAAAAG 58.429 33.333 0.00 0.00 31.05 2.27
1866 1916 8.463930 AGTTATCCTCATTGAACTGAACAAAA 57.536 30.769 0.00 0.00 31.05 2.44
1929 1983 8.042944 ACGTGTTTTCTTACTGGTAAAAGAAA 57.957 30.769 6.23 6.23 45.33 2.52
1949 2003 4.461431 TGGTCATACAGATCTGTTACGTGT 59.539 41.667 32.14 10.09 41.83 4.49
1951 2005 4.098044 CCTGGTCATACAGATCTGTTACGT 59.902 45.833 32.14 14.06 41.83 3.57
1956 2094 2.756907 AGCCTGGTCATACAGATCTGT 58.243 47.619 30.11 30.11 46.87 3.41
1959 2097 2.435805 TGGAAGCCTGGTCATACAGATC 59.564 50.000 0.00 0.00 40.97 2.75
1967 2105 1.304381 GCCAATGGAAGCCTGGTCA 60.304 57.895 2.05 0.00 32.46 4.02
2011 2149 2.489722 GGGAGGCATCAGAAACAACTTC 59.510 50.000 0.00 0.00 0.00 3.01
2308 2529 5.293079 GGTTGCAACTAAATGTGAGCAAAAA 59.707 36.000 27.64 0.00 45.43 1.94
2332 2553 2.623915 GCTCCACTGCAGCAAGGTG 61.624 63.158 15.27 14.85 36.82 4.00
2335 2556 3.264947 CAGCTCCACTGCAGCAAG 58.735 61.111 15.27 9.89 40.19 4.01
2417 2639 4.392921 ACAGAGCATGGTCATACACTAC 57.607 45.455 25.71 0.00 0.00 2.73
2420 2642 3.133003 AGGTACAGAGCATGGTCATACAC 59.867 47.826 27.04 20.11 0.00 2.90
2422 2644 4.141937 TGAAGGTACAGAGCATGGTCATAC 60.142 45.833 25.71 23.50 0.00 2.39
2439 2661 5.700402 AGTTTGTAGCATAGGATGAAGGT 57.300 39.130 0.00 0.00 0.00 3.50
2481 2704 6.672593 TCCTTTGATACTCATGGCCTTTATT 58.327 36.000 3.32 0.00 0.00 1.40
2610 2889 4.774124 TCATGTTGGAATGCTAGAAGGAG 58.226 43.478 0.00 0.00 0.00 3.69
2623 2902 9.460019 TGTGAAATATGAATAACTCATGTTGGA 57.540 29.630 0.00 0.00 43.03 3.53
2769 3057 7.280730 TGAATTCGCATTTAGCAGAAAATTG 57.719 32.000 0.04 0.00 46.13 2.32
2814 3114 9.956640 TTTCCATGTAAAATGGCAAATATCTTT 57.043 25.926 0.00 0.00 39.01 2.52
2823 3123 7.014711 TCACTAGTTTTTCCATGTAAAATGGCA 59.985 33.333 0.00 0.00 39.01 4.92
2858 3158 2.561478 TCCTGAGGCCACACTTTTAC 57.439 50.000 5.01 0.00 0.00 2.01
2864 3164 1.270550 CATGTTTTCCTGAGGCCACAC 59.729 52.381 5.01 0.00 0.00 3.82
2869 3169 3.319122 ACAAGTTCATGTTTTCCTGAGGC 59.681 43.478 0.00 0.00 0.00 4.70
2981 3281 4.079253 GCCCAACAAAACCTAGAGAATGA 58.921 43.478 0.00 0.00 0.00 2.57
3003 3303 4.142315 GGATGTGACAACAAGAATGGGATG 60.142 45.833 0.00 0.00 40.46 3.51
3111 3411 9.725019 CTGGGTATAATTATAGTGCTGAAATGA 57.275 33.333 5.39 0.00 0.00 2.57
3394 3704 9.499479 TGGTGAAATTTTTACATGCATATGTTT 57.501 25.926 0.00 0.00 45.01 2.83
3412 3722 9.003658 CAGTTTAGAGAACAACTATGGTGAAAT 57.996 33.333 0.00 0.00 31.78 2.17
3456 3872 8.012241 GTCAACAAGTGCAAGAATAGTAAGAAG 58.988 37.037 0.00 0.00 0.00 2.85
3457 3873 7.497579 TGTCAACAAGTGCAAGAATAGTAAGAA 59.502 33.333 0.00 0.00 0.00 2.52
3458 3874 6.989759 TGTCAACAAGTGCAAGAATAGTAAGA 59.010 34.615 0.00 0.00 0.00 2.10
3513 3929 9.093458 TGATGTAGCATCTCTAAATCTGGAATA 57.907 33.333 10.02 0.00 40.94 1.75
3566 3982 6.127591 GCTCTTTACTGAGAATGGACTGTCTA 60.128 42.308 7.85 1.29 36.23 2.59
3614 4030 7.144722 TCCAAATGCTGTGAATACAAGTAAG 57.855 36.000 0.00 0.00 36.14 2.34
3769 4185 2.035626 GTGGTGGTGATGGGGGTG 59.964 66.667 0.00 0.00 0.00 4.61
3930 4346 4.160642 TCAGGTGGGAAATGATGATGAG 57.839 45.455 0.00 0.00 0.00 2.90
3933 4349 5.521696 TGATTTCAGGTGGGAAATGATGAT 58.478 37.500 5.92 0.00 45.05 2.45
3935 4351 4.441079 GCTGATTTCAGGTGGGAAATGATG 60.441 45.833 9.49 0.00 45.05 3.07
3943 4360 0.458669 GCATGCTGATTTCAGGTGGG 59.541 55.000 11.37 0.00 43.94 4.61
3965 4382 3.192001 ACATGACCATGAGTGATTTGCAC 59.808 43.478 16.07 0.00 43.46 4.57
3966 4383 3.423749 ACATGACCATGAGTGATTTGCA 58.576 40.909 16.07 0.00 41.20 4.08
4008 4437 2.025981 TGCAAAGATACTGGTGCCTCAT 60.026 45.455 0.00 0.00 36.12 2.90
4020 4449 5.332743 AGGTGGAAAAAGGATGCAAAGATA 58.667 37.500 0.00 0.00 0.00 1.98
4027 4456 7.744087 AAAATTAAAGGTGGAAAAAGGATGC 57.256 32.000 0.00 0.00 0.00 3.91
4068 4497 6.770785 TGAGTAATTTGTTCAAACAGCTACCT 59.229 34.615 0.00 0.00 40.50 3.08
4097 4526 9.264719 CTATTACAATTTACCCTAAACCCGTAG 57.735 37.037 0.00 0.00 0.00 3.51
4100 4529 8.735692 TTCTATTACAATTTACCCTAAACCCG 57.264 34.615 0.00 0.00 0.00 5.28
4117 4546 8.950403 ACAGCGAACAAAAGAATTTCTATTAC 57.050 30.769 0.00 0.00 37.28 1.89
4126 4555 6.811170 TCTTCAAAAACAGCGAACAAAAGAAT 59.189 30.769 0.00 0.00 0.00 2.40
4166 4595 2.001076 AGAAAAAGAAGCACCCCTGG 57.999 50.000 0.00 0.00 0.00 4.45
4170 4599 7.822822 TGAATACTACTAGAAAAAGAAGCACCC 59.177 37.037 0.00 0.00 0.00 4.61
4291 4722 5.475909 ACAACAGAAGTAGTGACGAATAGGA 59.524 40.000 0.00 0.00 0.00 2.94
4359 4790 5.718801 TTTTATTGGCATAGGGGTACTCA 57.281 39.130 0.00 0.00 0.00 3.41
4373 4804 4.242475 GTCCGCCTTTTCCTTTTTATTGG 58.758 43.478 0.00 0.00 0.00 3.16
4375 4806 4.021456 CCTGTCCGCCTTTTCCTTTTTATT 60.021 41.667 0.00 0.00 0.00 1.40
4398 4829 2.981859 TGCCCGATTCTTTACTCTCC 57.018 50.000 0.00 0.00 0.00 3.71
4399 4830 3.198872 CCTTGCCCGATTCTTTACTCTC 58.801 50.000 0.00 0.00 0.00 3.20
4400 4831 2.681097 GCCTTGCCCGATTCTTTACTCT 60.681 50.000 0.00 0.00 0.00 3.24
4401 4832 1.671328 GCCTTGCCCGATTCTTTACTC 59.329 52.381 0.00 0.00 0.00 2.59
4402 4833 1.004277 TGCCTTGCCCGATTCTTTACT 59.996 47.619 0.00 0.00 0.00 2.24
4403 4834 1.459450 TGCCTTGCCCGATTCTTTAC 58.541 50.000 0.00 0.00 0.00 2.01
4449 4880 6.923508 CGTAATACTGCTACATCAAAGGATCA 59.076 38.462 0.00 0.00 0.00 2.92
4474 4905 3.674997 TGCTGTCTGTATCAGGGTTTTC 58.325 45.455 0.00 0.00 33.98 2.29
4476 4907 2.906389 TCTGCTGTCTGTATCAGGGTTT 59.094 45.455 0.00 0.00 33.98 3.27
4514 4948 7.715249 ACAGTGTGTCAAAGTACATAGTTTCAT 59.285 33.333 0.00 0.00 0.00 2.57
4565 4999 5.808366 AACTTGGACTCACATCAAGAGTA 57.192 39.130 8.95 0.00 45.79 2.59
4593 5027 5.970289 TCTGGTATGACAAGATATCCCTCT 58.030 41.667 0.00 0.00 0.00 3.69
4600 5034 6.127083 TGTTGCATCTCTGGTATGACAAGATA 60.127 38.462 0.00 0.00 0.00 1.98
4607 5041 5.255687 ACAAATGTTGCATCTCTGGTATGA 58.744 37.500 0.00 0.00 0.00 2.15
4615 5050 6.437928 TGACAGTTTACAAATGTTGCATCTC 58.562 36.000 0.00 0.00 0.00 2.75
4633 5068 5.555017 ACTGTTTTCATCTATGCTGACAGT 58.445 37.500 3.99 14.06 38.05 3.55
4666 5101 8.790718 GGAAGATAATACAACGTCATACTCCTA 58.209 37.037 0.00 0.00 0.00 2.94
4667 5102 7.506261 AGGAAGATAATACAACGTCATACTCCT 59.494 37.037 0.00 0.00 0.00 3.69
4668 5103 7.659186 AGGAAGATAATACAACGTCATACTCC 58.341 38.462 0.00 0.00 0.00 3.85
4669 5104 8.969267 CAAGGAAGATAATACAACGTCATACTC 58.031 37.037 0.00 0.00 0.00 2.59
4670 5105 8.475639 ACAAGGAAGATAATACAACGTCATACT 58.524 33.333 0.00 0.00 0.00 2.12
4671 5106 8.540492 CACAAGGAAGATAATACAACGTCATAC 58.460 37.037 0.00 0.00 0.00 2.39
4735 5171 6.700081 TGGTATAAATTTCCAGAAGATCGTCG 59.300 38.462 2.87 0.00 0.00 5.12
4789 5229 5.126869 TGATGAACTGCTTTTGTCTGGAAAA 59.873 36.000 0.00 0.00 0.00 2.29
4819 5259 3.889815 TCTGCCTTATGAAGATGTTGGG 58.110 45.455 0.00 0.00 0.00 4.12
4848 5289 4.158394 CCATGGCAGCTTTATGTTACTGTT 59.842 41.667 0.00 0.00 32.65 3.16
4850 5291 3.489738 GCCATGGCAGCTTTATGTTACTG 60.490 47.826 32.08 0.00 41.49 2.74
4879 5320 3.393941 TCAAAATTCAGGTTGGGGCAAAT 59.606 39.130 0.00 0.00 0.00 2.32
4880 5321 2.774234 TCAAAATTCAGGTTGGGGCAAA 59.226 40.909 0.00 0.00 0.00 3.68
4887 5328 8.140677 TGTTGCTTATTTCAAAATTCAGGTTG 57.859 30.769 0.00 0.00 0.00 3.77
4890 5331 8.225107 CACATGTTGCTTATTTCAAAATTCAGG 58.775 33.333 0.00 0.00 0.00 3.86
4911 5352 5.008415 GGGAGCTTCAGATACATTTCACATG 59.992 44.000 0.00 0.00 0.00 3.21
4913 5354 4.225942 AGGGAGCTTCAGATACATTTCACA 59.774 41.667 0.00 0.00 0.00 3.58
4914 5355 4.775236 AGGGAGCTTCAGATACATTTCAC 58.225 43.478 0.00 0.00 0.00 3.18
4928 5369 4.048470 GGGGGCGAAAGGGAGCTT 62.048 66.667 0.00 0.00 0.00 3.74
4931 5372 2.044946 CAAGGGGGCGAAAGGGAG 60.045 66.667 0.00 0.00 0.00 4.30
4939 5380 4.351054 AAGCAGGTCAAGGGGGCG 62.351 66.667 0.00 0.00 0.00 6.13
4940 5381 2.677875 CAAGCAGGTCAAGGGGGC 60.678 66.667 0.00 0.00 0.00 5.80
4941 5382 2.677875 GCAAGCAGGTCAAGGGGG 60.678 66.667 0.00 0.00 0.00 5.40
4942 5383 1.975407 CAGCAAGCAGGTCAAGGGG 60.975 63.158 0.00 0.00 0.00 4.79
4943 5384 0.825010 AACAGCAAGCAGGTCAAGGG 60.825 55.000 0.00 0.00 0.00 3.95
4944 5385 0.595095 GAACAGCAAGCAGGTCAAGG 59.405 55.000 0.00 0.00 0.00 3.61
4945 5386 1.602311 AGAACAGCAAGCAGGTCAAG 58.398 50.000 5.30 0.00 0.00 3.02
4946 5387 2.928801 TAGAACAGCAAGCAGGTCAA 57.071 45.000 5.30 0.00 0.00 3.18
5003 5444 6.478512 AAACTGCCATAGAAACCTCAAAAA 57.521 33.333 0.00 0.00 0.00 1.94
5004 5445 6.478512 AAAACTGCCATAGAAACCTCAAAA 57.521 33.333 0.00 0.00 0.00 2.44
5005 5446 6.478512 AAAAACTGCCATAGAAACCTCAAA 57.521 33.333 0.00 0.00 0.00 2.69
5030 5471 7.707624 ATCTGCCATAGAATCAACTCAAAAA 57.292 32.000 0.00 0.00 39.30 1.94
5031 5472 7.363181 CCAATCTGCCATAGAATCAACTCAAAA 60.363 37.037 0.00 0.00 39.30 2.44
5032 5473 6.095860 CCAATCTGCCATAGAATCAACTCAAA 59.904 38.462 0.00 0.00 39.30 2.69
5033 5474 5.591472 CCAATCTGCCATAGAATCAACTCAA 59.409 40.000 0.00 0.00 39.30 3.02
5034 5475 5.128205 CCAATCTGCCATAGAATCAACTCA 58.872 41.667 0.00 0.00 39.30 3.41
5035 5476 4.023365 GCCAATCTGCCATAGAATCAACTC 60.023 45.833 0.00 0.00 39.30 3.01
5036 5477 3.887716 GCCAATCTGCCATAGAATCAACT 59.112 43.478 0.00 0.00 39.30 3.16
5037 5478 3.633525 TGCCAATCTGCCATAGAATCAAC 59.366 43.478 0.00 0.00 39.30 3.18
5038 5479 3.887110 CTGCCAATCTGCCATAGAATCAA 59.113 43.478 0.00 0.00 39.30 2.57
5039 5480 3.483421 CTGCCAATCTGCCATAGAATCA 58.517 45.455 0.00 0.00 39.30 2.57
5040 5481 2.818432 CCTGCCAATCTGCCATAGAATC 59.182 50.000 0.00 0.00 39.30 2.52
5041 5482 2.872732 CCTGCCAATCTGCCATAGAAT 58.127 47.619 0.00 0.00 39.30 2.40
5042 5483 1.751733 GCCTGCCAATCTGCCATAGAA 60.752 52.381 0.00 0.00 39.30 2.10
5043 5484 0.179009 GCCTGCCAATCTGCCATAGA 60.179 55.000 0.00 0.00 40.37 1.98
5044 5485 0.466739 TGCCTGCCAATCTGCCATAG 60.467 55.000 0.00 0.00 0.00 2.23
5045 5486 0.033306 TTGCCTGCCAATCTGCCATA 60.033 50.000 0.00 0.00 0.00 2.74
5046 5487 0.905809 TTTGCCTGCCAATCTGCCAT 60.906 50.000 0.00 0.00 32.49 4.40
5047 5488 1.533513 TTTGCCTGCCAATCTGCCA 60.534 52.632 0.00 0.00 32.49 4.92
5048 5489 1.217244 CTTTGCCTGCCAATCTGCC 59.783 57.895 0.00 0.00 32.49 4.85
5049 5490 0.108945 GTCTTTGCCTGCCAATCTGC 60.109 55.000 0.00 0.00 32.49 4.26
5050 5491 1.201647 CAGTCTTTGCCTGCCAATCTG 59.798 52.381 0.00 0.00 32.49 2.90
5051 5492 1.542492 CAGTCTTTGCCTGCCAATCT 58.458 50.000 0.00 0.00 32.49 2.40
5052 5493 0.529378 CCAGTCTTTGCCTGCCAATC 59.471 55.000 0.00 0.00 32.49 2.67
5053 5494 1.538687 GCCAGTCTTTGCCTGCCAAT 61.539 55.000 0.00 0.00 32.49 3.16
5054 5495 2.202395 GCCAGTCTTTGCCTGCCAA 61.202 57.895 0.00 0.00 0.00 4.52
5055 5496 2.598394 GCCAGTCTTTGCCTGCCA 60.598 61.111 0.00 0.00 0.00 4.92
5056 5497 1.905354 AAGCCAGTCTTTGCCTGCC 60.905 57.895 0.00 0.00 0.00 4.85
5057 5498 1.288127 CAAGCCAGTCTTTGCCTGC 59.712 57.895 0.00 0.00 31.27 4.85
5058 5499 0.595095 GACAAGCCAGTCTTTGCCTG 59.405 55.000 0.00 0.00 35.65 4.85
5059 5500 0.475906 AGACAAGCCAGTCTTTGCCT 59.524 50.000 2.99 0.00 46.26 4.75
5060 5501 3.027419 AGACAAGCCAGTCTTTGCC 57.973 52.632 2.99 0.00 46.26 4.52
5066 5507 2.746362 CCATGAAGAAGACAAGCCAGTC 59.254 50.000 0.00 0.00 38.81 3.51
5067 5508 2.373169 TCCATGAAGAAGACAAGCCAGT 59.627 45.455 0.00 0.00 0.00 4.00
5068 5509 2.746362 GTCCATGAAGAAGACAAGCCAG 59.254 50.000 0.00 0.00 0.00 4.85
5069 5510 2.373169 AGTCCATGAAGAAGACAAGCCA 59.627 45.455 0.00 0.00 32.82 4.75
5070 5511 3.006247 GAGTCCATGAAGAAGACAAGCC 58.994 50.000 0.00 0.00 32.82 4.35
5091 5532 1.165907 TCAAAGGCCTTGTGCGACAG 61.166 55.000 21.33 2.14 42.61 3.51
5111 5552 1.173043 CTTGTGGGCCGCTGAATTTA 58.827 50.000 19.39 0.00 0.00 1.40
5145 5586 4.584518 TGTGGGCTGTGGGCTGTG 62.585 66.667 0.00 0.00 41.46 3.66
5146 5587 4.275508 CTGTGGGCTGTGGGCTGT 62.276 66.667 0.00 0.00 41.46 4.40
5184 5625 2.359975 GGGGTGGCTGTTCGGAAG 60.360 66.667 0.00 0.00 0.00 3.46
5185 5626 3.961414 GGGGGTGGCTGTTCGGAA 61.961 66.667 0.00 0.00 0.00 4.30
5195 5636 4.958897 TTTTGGTCGCGGGGGTGG 62.959 66.667 6.13 0.00 0.00 4.61
5196 5637 3.666253 GTTTTGGTCGCGGGGGTG 61.666 66.667 6.13 0.00 0.00 4.61
5197 5638 4.960866 GGTTTTGGTCGCGGGGGT 62.961 66.667 6.13 0.00 0.00 4.95
5198 5639 4.653888 AGGTTTTGGTCGCGGGGG 62.654 66.667 6.13 0.00 0.00 5.40
5199 5640 3.053896 GAGGTTTTGGTCGCGGGG 61.054 66.667 6.13 0.00 0.00 5.73
5200 5641 3.419759 CGAGGTTTTGGTCGCGGG 61.420 66.667 6.13 0.00 0.00 6.13
5356 5799 5.220970 GGAGTTAGAGAAGAGATGGAGAACG 60.221 48.000 0.00 0.00 0.00 3.95
5377 5820 1.226435 GTGCGAGCTACAGACGGAG 60.226 63.158 0.00 0.00 0.00 4.63
5405 5850 1.112916 TGCCTGCCTATGCTAGCGTA 61.113 55.000 15.76 15.76 38.53 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.