Multiple sequence alignment - TraesCS3B01G105100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G105100 chr3B 100.000 2800 0 0 1 2800 71330014 71327215 0.000000e+00 5171.0
1 TraesCS3B01G105100 chr3B 85.764 288 41 0 1111 1398 141132559 141132846 3.500000e-79 305.0
2 TraesCS3B01G105100 chr3B 86.207 261 34 2 1140 1399 71356113 71355854 5.900000e-72 281.0
3 TraesCS3B01G105100 chr3B 84.314 153 24 0 1485 1637 71350755 71350603 1.740000e-32 150.0
4 TraesCS3B01G105100 chr3B 83.708 178 10 4 188 346 565304634 565304457 1.740000e-32 150.0
5 TraesCS3B01G105100 chr3B 86.885 61 7 1 1584 1644 141133056 141133115 1.800000e-07 67.6
6 TraesCS3B01G105100 chr3A 90.173 1903 108 38 923 2800 57227069 57225221 0.000000e+00 2405.0
7 TraesCS3B01G105100 chr3A 87.108 287 35 2 1114 1399 57244678 57244393 9.670000e-85 324.0
8 TraesCS3B01G105100 chr3A 84.942 259 19 10 342 598 57227898 57227658 7.750000e-61 244.0
9 TraesCS3B01G105100 chr3A 82.085 307 29 10 70 351 55840496 55840191 3.600000e-59 239.0
10 TraesCS3B01G105100 chr3D 85.084 1495 111 52 634 2092 45667132 45665714 0.000000e+00 1423.0
11 TraesCS3B01G105100 chr3D 87.150 428 35 8 2163 2576 45663022 45662601 4.220000e-128 468.0
12 TraesCS3B01G105100 chr3D 89.818 275 20 5 77 344 595863270 595863543 2.060000e-91 346.0
13 TraesCS3B01G105100 chr3D 86.063 287 38 2 1114 1399 45686797 45686512 9.740000e-80 307.0
14 TraesCS3B01G105100 chr3D 98.507 67 1 0 342 408 45667410 45667344 4.900000e-23 119.0
15 TraesCS3B01G105100 chr2D 84.770 696 88 8 2116 2800 391113961 391114649 0.000000e+00 682.0
16 TraesCS3B01G105100 chr2D 89.286 280 14 6 70 344 128418360 128418628 1.240000e-88 337.0
17 TraesCS3B01G105100 chr2D 84.262 305 24 11 70 351 71353746 71353443 2.750000e-70 276.0
18 TraesCS3B01G105100 chr2B 84.770 696 86 9 2116 2800 462301544 462302230 0.000000e+00 680.0
19 TraesCS3B01G105100 chr2A 84.384 698 89 11 2116 2800 527701787 527702477 0.000000e+00 667.0
20 TraesCS3B01G105100 chr2A 87.456 287 23 6 70 343 159188591 159188305 4.500000e-83 318.0
21 TraesCS3B01G105100 chr2A 86.667 300 15 11 70 344 743327493 743327792 2.710000e-80 309.0
22 TraesCS3B01G105100 chr2A 83.732 209 14 4 156 344 31083483 31083691 2.220000e-41 180.0
23 TraesCS3B01G105100 chr7D 87.584 298 13 12 70 344 49806890 49806594 9.670000e-85 324.0
24 TraesCS3B01G105100 chr7D 86.842 304 16 7 70 350 141345340 141345642 4.500000e-83 318.0
25 TraesCS3B01G105100 chr7D 85.106 282 35 4 70 345 360325200 360325480 5.900000e-72 281.0
26 TraesCS3B01G105100 chr7D 86.207 174 6 3 188 343 46324814 46324641 3.710000e-39 172.0
27 TraesCS3B01G105100 chr5B 85.197 304 20 9 70 350 403423059 403423360 3.530000e-74 289.0
28 TraesCS3B01G105100 chr5B 81.579 304 25 13 70 351 386338203 386338497 3.630000e-54 222.0
29 TraesCS3B01G105100 chr4B 85.517 290 27 11 70 345 85641238 85640950 3.530000e-74 289.0
30 TraesCS3B01G105100 chr4B 84.752 282 31 8 70 344 620366794 620366518 3.550000e-69 272.0
31 TraesCS3B01G105100 chr1A 85.417 288 28 9 70 344 590006911 590006625 1.270000e-73 287.0
32 TraesCS3B01G105100 chr4D 82.428 313 23 14 70 351 22515722 22516033 7.750000e-61 244.0
33 TraesCS3B01G105100 chrUn 83.582 268 33 5 2116 2378 479687486 479687747 1.000000e-59 241.0
34 TraesCS3B01G105100 chr5A 84.181 177 10 4 188 346 385052321 385052497 3.730000e-34 156.0
35 TraesCS3B01G105100 chr6B 83.516 182 11 4 188 350 82264011 82263830 4.830000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G105100 chr3B 71327215 71330014 2799 True 5171.0 5171 100.0000 1 2800 1 chr3B.!!$R1 2799
1 TraesCS3B01G105100 chr3A 57225221 57227898 2677 True 1324.5 2405 87.5575 342 2800 2 chr3A.!!$R3 2458
2 TraesCS3B01G105100 chr3D 45662601 45667410 4809 True 670.0 1423 90.2470 342 2576 3 chr3D.!!$R2 2234
3 TraesCS3B01G105100 chr2D 391113961 391114649 688 False 682.0 682 84.7700 2116 2800 1 chr2D.!!$F2 684
4 TraesCS3B01G105100 chr2B 462301544 462302230 686 False 680.0 680 84.7700 2116 2800 1 chr2B.!!$F1 684
5 TraesCS3B01G105100 chr2A 527701787 527702477 690 False 667.0 667 84.3840 2116 2800 1 chr2A.!!$F2 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.028110 GAAGGCCGAACGCATGATTC 59.972 55.0 0.0 0.0 40.31 2.52 F
733 778 0.033011 ACCCCAGCGACTACAGATCT 60.033 55.0 0.0 0.0 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1051 1585 0.182775 TCGTCATCCTCCGATCCAGA 59.817 55.0 0.0 0.0 0.0 3.86 R
2175 5347 0.108329 ACCGACATTAGAACCGCCAG 60.108 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.054751 AGTTTATTAATGGCTCCTTAGTGACC 58.945 38.462 0.00 0.00 0.00 4.02
26 27 6.569127 TTATTAATGGCTCCTTAGTGACCA 57.431 37.500 0.00 0.00 34.28 4.02
27 28 2.789409 AATGGCTCCTTAGTGACCAC 57.211 50.000 0.00 0.00 32.13 4.16
28 29 1.656587 ATGGCTCCTTAGTGACCACA 58.343 50.000 2.78 0.00 32.13 4.17
29 30 1.656587 TGGCTCCTTAGTGACCACAT 58.343 50.000 2.78 0.00 0.00 3.21
30 31 2.827755 TGGCTCCTTAGTGACCACATA 58.172 47.619 2.78 0.00 0.00 2.29
31 32 2.500098 TGGCTCCTTAGTGACCACATAC 59.500 50.000 2.78 0.00 0.00 2.39
32 33 2.158943 GGCTCCTTAGTGACCACATACC 60.159 54.545 2.78 0.00 0.00 2.73
33 34 2.766828 GCTCCTTAGTGACCACATACCT 59.233 50.000 2.78 0.00 0.00 3.08
34 35 3.181474 GCTCCTTAGTGACCACATACCTC 60.181 52.174 2.78 0.00 0.00 3.85
35 36 4.023980 CTCCTTAGTGACCACATACCTCA 58.976 47.826 2.78 0.00 0.00 3.86
36 37 3.767673 TCCTTAGTGACCACATACCTCAC 59.232 47.826 2.78 0.00 35.51 3.51
37 38 3.118738 CCTTAGTGACCACATACCTCACC 60.119 52.174 2.78 0.00 35.83 4.02
38 39 2.024176 AGTGACCACATACCTCACCA 57.976 50.000 2.78 0.00 35.83 4.17
39 40 1.623811 AGTGACCACATACCTCACCAC 59.376 52.381 2.78 0.00 35.83 4.16
40 41 1.346395 GTGACCACATACCTCACCACA 59.654 52.381 0.00 0.00 0.00 4.17
41 42 2.050918 TGACCACATACCTCACCACAA 58.949 47.619 0.00 0.00 0.00 3.33
42 43 2.439880 TGACCACATACCTCACCACAAA 59.560 45.455 0.00 0.00 0.00 2.83
43 44 3.117851 TGACCACATACCTCACCACAAAA 60.118 43.478 0.00 0.00 0.00 2.44
44 45 3.219281 ACCACATACCTCACCACAAAAC 58.781 45.455 0.00 0.00 0.00 2.43
45 46 2.225491 CCACATACCTCACCACAAAACG 59.775 50.000 0.00 0.00 0.00 3.60
46 47 2.225491 CACATACCTCACCACAAAACGG 59.775 50.000 0.00 0.00 0.00 4.44
47 48 1.810151 CATACCTCACCACAAAACGGG 59.190 52.381 0.00 0.00 0.00 5.28
48 49 1.129917 TACCTCACCACAAAACGGGA 58.870 50.000 0.00 0.00 0.00 5.14
49 50 0.256464 ACCTCACCACAAAACGGGAA 59.744 50.000 0.00 0.00 0.00 3.97
50 51 0.951558 CCTCACCACAAAACGGGAAG 59.048 55.000 0.00 0.00 0.00 3.46
51 52 0.951558 CTCACCACAAAACGGGAAGG 59.048 55.000 0.00 0.00 0.00 3.46
52 53 1.104577 TCACCACAAAACGGGAAGGC 61.105 55.000 0.00 0.00 0.00 4.35
53 54 1.830847 ACCACAAAACGGGAAGGCC 60.831 57.895 0.00 0.00 0.00 5.19
54 55 2.642700 CACAAAACGGGAAGGCCG 59.357 61.111 0.00 0.00 33.83 6.13
55 56 1.894756 CACAAAACGGGAAGGCCGA 60.895 57.895 0.00 0.00 33.83 5.54
56 57 1.152922 ACAAAACGGGAAGGCCGAA 60.153 52.632 0.00 0.00 33.83 4.30
57 58 1.284715 CAAAACGGGAAGGCCGAAC 59.715 57.895 0.00 0.00 33.83 3.95
58 59 2.255881 AAAACGGGAAGGCCGAACG 61.256 57.895 0.00 3.62 33.83 3.95
62 63 3.508840 GGGAAGGCCGAACGCATG 61.509 66.667 0.00 0.00 40.31 4.06
63 64 2.435938 GGAAGGCCGAACGCATGA 60.436 61.111 0.00 0.00 40.31 3.07
64 65 1.819632 GGAAGGCCGAACGCATGAT 60.820 57.895 0.00 0.00 40.31 2.45
65 66 1.376609 GGAAGGCCGAACGCATGATT 61.377 55.000 0.00 0.00 40.31 2.57
66 67 0.028110 GAAGGCCGAACGCATGATTC 59.972 55.000 0.00 0.00 40.31 2.52
67 68 0.676466 AAGGCCGAACGCATGATTCA 60.676 50.000 0.00 0.00 40.31 2.57
68 69 1.062525 GGCCGAACGCATGATTCAC 59.937 57.895 0.00 0.00 40.31 3.18
69 70 1.643868 GGCCGAACGCATGATTCACA 61.644 55.000 0.00 0.00 40.31 3.58
70 71 0.521242 GCCGAACGCATGATTCACAC 60.521 55.000 0.00 0.00 37.47 3.82
71 72 0.096976 CCGAACGCATGATTCACACC 59.903 55.000 0.00 0.00 0.00 4.16
72 73 0.795698 CGAACGCATGATTCACACCA 59.204 50.000 0.00 0.00 0.00 4.17
73 74 1.196581 CGAACGCATGATTCACACCAA 59.803 47.619 0.00 0.00 0.00 3.67
74 75 2.584791 GAACGCATGATTCACACCAAC 58.415 47.619 0.00 0.00 0.00 3.77
75 76 0.881118 ACGCATGATTCACACCAACC 59.119 50.000 0.00 0.00 0.00 3.77
76 77 1.167851 CGCATGATTCACACCAACCT 58.832 50.000 0.00 0.00 0.00 3.50
77 78 1.135603 CGCATGATTCACACCAACCTG 60.136 52.381 0.00 0.00 0.00 4.00
78 79 1.888512 GCATGATTCACACCAACCTGT 59.111 47.619 0.00 0.00 0.00 4.00
79 80 2.352030 GCATGATTCACACCAACCTGTG 60.352 50.000 0.00 0.00 42.62 3.66
92 93 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
93 94 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
94 95 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
95 96 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
96 97 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
97 98 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
98 99 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
100 101 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
101 102 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
102 103 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
103 104 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
104 105 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
105 106 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
106 107 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
107 108 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
108 109 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
113 114 1.527370 GGACTGTGGTATCCCAGCC 59.473 63.158 0.00 0.00 42.94 4.85
114 115 1.527370 GACTGTGGTATCCCAGCCC 59.473 63.158 0.00 0.00 42.94 5.19
115 116 1.229820 ACTGTGGTATCCCAGCCCA 60.230 57.895 0.00 0.00 42.94 5.36
117 118 2.270874 CTGTGGTATCCCAGCCCACC 62.271 65.000 5.66 0.00 46.49 4.61
118 119 2.126142 TGGTATCCCAGCCCACCA 59.874 61.111 0.00 0.00 38.72 4.17
119 120 2.000701 TGGTATCCCAGCCCACCAG 61.001 63.158 0.00 0.00 36.15 4.00
120 121 2.757124 GGTATCCCAGCCCACCAGG 61.757 68.421 0.00 0.00 39.47 4.45
121 122 1.692749 GTATCCCAGCCCACCAGGA 60.693 63.158 0.00 0.00 38.24 3.86
122 123 1.062488 GTATCCCAGCCCACCAGGAT 61.062 60.000 0.00 0.00 41.90 3.24
123 124 0.328450 TATCCCAGCCCACCAGGATT 60.328 55.000 0.00 0.00 39.77 3.01
124 125 1.649271 ATCCCAGCCCACCAGGATTC 61.649 60.000 0.00 0.00 35.55 2.52
125 126 2.615465 CCCAGCCCACCAGGATTCA 61.615 63.158 0.00 0.00 38.24 2.57
126 127 1.383799 CCAGCCCACCAGGATTCAA 59.616 57.895 0.00 0.00 38.24 2.69
127 128 0.682209 CCAGCCCACCAGGATTCAAG 60.682 60.000 0.00 0.00 38.24 3.02
128 129 0.038744 CAGCCCACCAGGATTCAAGT 59.961 55.000 0.00 0.00 38.24 3.16
129 130 0.329596 AGCCCACCAGGATTCAAGTC 59.670 55.000 0.00 0.00 38.24 3.01
130 131 0.681243 GCCCACCAGGATTCAAGTCC 60.681 60.000 0.00 0.00 38.24 3.85
136 137 3.965888 AGGATTCAAGTCCTGGTGC 57.034 52.632 0.00 0.00 46.76 5.01
137 138 1.366319 AGGATTCAAGTCCTGGTGCT 58.634 50.000 0.00 0.00 46.76 4.40
138 139 1.280421 AGGATTCAAGTCCTGGTGCTC 59.720 52.381 0.00 0.00 46.76 4.26
139 140 1.363744 GATTCAAGTCCTGGTGCTCG 58.636 55.000 0.00 0.00 0.00 5.03
140 141 0.674895 ATTCAAGTCCTGGTGCTCGC 60.675 55.000 0.00 0.00 0.00 5.03
141 142 2.031012 CAAGTCCTGGTGCTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
142 143 1.376424 CAAGTCCTGGTGCTCGCAT 60.376 57.895 0.00 0.00 0.00 4.73
143 144 0.957395 CAAGTCCTGGTGCTCGCATT 60.957 55.000 0.00 0.00 0.00 3.56
144 145 0.250901 AAGTCCTGGTGCTCGCATTT 60.251 50.000 0.00 0.00 0.00 2.32
145 146 0.613260 AGTCCTGGTGCTCGCATTTA 59.387 50.000 0.00 0.00 0.00 1.40
146 147 1.210478 AGTCCTGGTGCTCGCATTTAT 59.790 47.619 0.00 0.00 0.00 1.40
147 148 2.017049 GTCCTGGTGCTCGCATTTATT 58.983 47.619 0.00 0.00 0.00 1.40
148 149 2.032178 GTCCTGGTGCTCGCATTTATTC 59.968 50.000 0.00 0.00 0.00 1.75
149 150 1.334869 CCTGGTGCTCGCATTTATTCC 59.665 52.381 0.00 0.00 0.00 3.01
150 151 2.292267 CTGGTGCTCGCATTTATTCCT 58.708 47.619 0.00 0.00 0.00 3.36
151 152 2.016318 TGGTGCTCGCATTTATTCCTG 58.984 47.619 0.00 0.00 0.00 3.86
152 153 1.334869 GGTGCTCGCATTTATTCCTGG 59.665 52.381 0.00 0.00 0.00 4.45
153 154 2.288666 GTGCTCGCATTTATTCCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
154 155 2.032178 GTGCTCGCATTTATTCCTGGAC 59.968 50.000 0.00 0.00 0.00 4.02
155 156 2.092968 TGCTCGCATTTATTCCTGGACT 60.093 45.455 0.00 0.00 0.00 3.85
156 157 3.133901 TGCTCGCATTTATTCCTGGACTA 59.866 43.478 0.00 0.00 0.00 2.59
157 158 4.202357 TGCTCGCATTTATTCCTGGACTAT 60.202 41.667 0.00 0.00 0.00 2.12
158 159 4.757149 GCTCGCATTTATTCCTGGACTATT 59.243 41.667 0.00 0.00 0.00 1.73
159 160 5.239525 GCTCGCATTTATTCCTGGACTATTT 59.760 40.000 0.00 0.00 0.00 1.40
160 161 6.238759 GCTCGCATTTATTCCTGGACTATTTT 60.239 38.462 0.00 0.00 0.00 1.82
161 162 7.041372 GCTCGCATTTATTCCTGGACTATTTTA 60.041 37.037 0.00 0.00 0.00 1.52
162 163 8.378172 TCGCATTTATTCCTGGACTATTTTAG 57.622 34.615 0.00 0.00 0.00 1.85
163 164 7.444183 TCGCATTTATTCCTGGACTATTTTAGG 59.556 37.037 0.00 0.00 0.00 2.69
164 165 7.444183 CGCATTTATTCCTGGACTATTTTAGGA 59.556 37.037 0.00 0.00 37.55 2.94
165 166 9.301897 GCATTTATTCCTGGACTATTTTAGGAT 57.698 33.333 0.00 0.00 38.98 3.24
169 170 9.862149 TTATTCCTGGACTATTTTAGGATTTCC 57.138 33.333 0.00 0.00 38.98 3.13
170 171 5.925509 TCCTGGACTATTTTAGGATTTCCG 58.074 41.667 0.00 0.00 42.08 4.30
171 172 5.063880 CCTGGACTATTTTAGGATTTCCGG 58.936 45.833 0.00 0.00 42.08 5.14
172 173 4.457466 TGGACTATTTTAGGATTTCCGGC 58.543 43.478 0.00 0.00 42.08 6.13
173 174 3.497262 GGACTATTTTAGGATTTCCGGCG 59.503 47.826 0.00 0.00 42.08 6.46
174 175 4.374399 GACTATTTTAGGATTTCCGGCGA 58.626 43.478 9.30 0.00 42.08 5.54
175 176 4.969484 ACTATTTTAGGATTTCCGGCGAT 58.031 39.130 9.30 0.00 42.08 4.58
176 177 4.755123 ACTATTTTAGGATTTCCGGCGATG 59.245 41.667 9.30 0.00 42.08 3.84
177 178 1.305201 TTTAGGATTTCCGGCGATGC 58.695 50.000 9.30 0.00 42.08 3.91
178 179 0.878523 TTAGGATTTCCGGCGATGCG 60.879 55.000 9.30 0.00 42.08 4.73
189 190 3.327148 CGATGCGCATTCAGGAGG 58.673 61.111 26.12 4.47 0.00 4.30
190 191 1.227350 CGATGCGCATTCAGGAGGA 60.227 57.895 26.12 0.00 0.00 3.71
191 192 1.220169 CGATGCGCATTCAGGAGGAG 61.220 60.000 26.12 4.12 0.00 3.69
192 193 0.105593 GATGCGCATTCAGGAGGAGA 59.894 55.000 26.12 0.00 0.00 3.71
193 194 0.763652 ATGCGCATTCAGGAGGAGAT 59.236 50.000 19.28 0.00 0.00 2.75
194 195 0.179065 TGCGCATTCAGGAGGAGATG 60.179 55.000 5.66 0.00 0.00 2.90
195 196 0.179062 GCGCATTCAGGAGGAGATGT 60.179 55.000 0.30 0.00 0.00 3.06
196 197 1.745141 GCGCATTCAGGAGGAGATGTT 60.745 52.381 0.30 0.00 0.00 2.71
197 198 2.208431 CGCATTCAGGAGGAGATGTTC 58.792 52.381 0.00 0.00 0.00 3.18
205 206 4.808649 GGAGATGTTCCCGTCGAC 57.191 61.111 5.18 5.18 40.37 4.20
206 207 1.226603 GGAGATGTTCCCGTCGACG 60.227 63.158 30.33 30.33 40.37 5.12
207 208 1.651240 GGAGATGTTCCCGTCGACGA 61.651 60.000 37.65 18.99 40.37 4.20
208 209 0.522915 GAGATGTTCCCGTCGACGAC 60.523 60.000 37.65 27.09 43.02 4.34
218 219 4.994744 TCGACGACGAGGTGTCTA 57.005 55.556 5.75 0.00 45.87 2.59
219 220 2.449548 TCGACGACGAGGTGTCTAC 58.550 57.895 5.75 0.00 45.87 2.59
220 221 1.058438 CGACGACGAGGTGTCTACG 59.942 63.158 0.00 0.00 45.87 3.51
221 222 1.423056 GACGACGAGGTGTCTACGG 59.577 63.158 0.00 0.00 45.87 4.02
222 223 1.294659 GACGACGAGGTGTCTACGGT 61.295 60.000 0.00 0.00 45.87 4.83
223 224 1.134075 CGACGAGGTGTCTACGGTG 59.866 63.158 0.00 0.00 45.87 4.94
224 225 1.293963 CGACGAGGTGTCTACGGTGA 61.294 60.000 0.00 0.00 45.87 4.02
225 226 0.167689 GACGAGGTGTCTACGGTGAC 59.832 60.000 0.00 3.56 44.58 3.67
226 227 0.250640 ACGAGGTGTCTACGGTGACT 60.251 55.000 10.55 0.00 37.79 3.41
227 228 0.447011 CGAGGTGTCTACGGTGACTC 59.553 60.000 10.55 7.37 37.79 3.36
228 229 0.810016 GAGGTGTCTACGGTGACTCC 59.190 60.000 17.59 17.59 45.66 3.85
243 244 5.869350 GGTGACTCCGTAAATTTCAAGATG 58.131 41.667 0.00 0.00 0.00 2.90
244 245 5.163754 GGTGACTCCGTAAATTTCAAGATGG 60.164 44.000 0.00 0.00 0.00 3.51
245 246 5.411669 GTGACTCCGTAAATTTCAAGATGGT 59.588 40.000 0.00 0.00 0.00 3.55
246 247 6.592607 GTGACTCCGTAAATTTCAAGATGGTA 59.407 38.462 0.00 0.00 0.00 3.25
247 248 7.280205 GTGACTCCGTAAATTTCAAGATGGTAT 59.720 37.037 0.00 0.00 0.00 2.73
248 249 7.279981 TGACTCCGTAAATTTCAAGATGGTATG 59.720 37.037 0.00 0.00 0.00 2.39
249 250 6.038271 ACTCCGTAAATTTCAAGATGGTATGC 59.962 38.462 0.00 0.00 0.00 3.14
250 251 5.298276 TCCGTAAATTTCAAGATGGTATGCC 59.702 40.000 0.00 0.00 0.00 4.40
251 252 5.204833 CGTAAATTTCAAGATGGTATGCCG 58.795 41.667 0.00 0.00 37.67 5.69
252 253 4.654091 AAATTTCAAGATGGTATGCCGG 57.346 40.909 0.00 0.00 37.67 6.13
253 254 1.388547 TTTCAAGATGGTATGCCGGC 58.611 50.000 22.73 22.73 37.67 6.13
254 255 0.546122 TTCAAGATGGTATGCCGGCT 59.454 50.000 29.70 15.76 37.67 5.52
255 256 0.106708 TCAAGATGGTATGCCGGCTC 59.893 55.000 29.70 15.82 37.67 4.70
256 257 0.179048 CAAGATGGTATGCCGGCTCA 60.179 55.000 29.70 19.88 37.67 4.26
257 258 0.107456 AAGATGGTATGCCGGCTCAG 59.893 55.000 29.70 0.00 37.67 3.35
258 259 1.050988 AGATGGTATGCCGGCTCAGT 61.051 55.000 29.70 13.44 37.67 3.41
259 260 0.601311 GATGGTATGCCGGCTCAGTC 60.601 60.000 29.70 14.01 37.67 3.51
260 261 1.050988 ATGGTATGCCGGCTCAGTCT 61.051 55.000 29.70 5.58 37.67 3.24
261 262 1.264749 TGGTATGCCGGCTCAGTCTT 61.265 55.000 29.70 6.03 37.67 3.01
262 263 0.107654 GGTATGCCGGCTCAGTCTTT 60.108 55.000 29.70 4.59 0.00 2.52
263 264 1.291132 GTATGCCGGCTCAGTCTTTC 58.709 55.000 29.70 4.01 0.00 2.62
264 265 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
265 266 1.888436 ATGCCGGCTCAGTCTTTCGA 61.888 55.000 29.70 1.81 0.00 3.71
266 267 1.374252 GCCGGCTCAGTCTTTCGAA 60.374 57.895 22.15 0.00 0.00 3.71
267 268 1.355066 GCCGGCTCAGTCTTTCGAAG 61.355 60.000 22.15 0.00 0.00 3.79
268 269 0.737715 CCGGCTCAGTCTTTCGAAGG 60.738 60.000 0.00 0.00 0.00 3.46
269 270 0.737715 CGGCTCAGTCTTTCGAAGGG 60.738 60.000 7.49 0.78 0.00 3.95
270 271 0.321996 GGCTCAGTCTTTCGAAGGGT 59.678 55.000 7.49 0.00 0.00 4.34
271 272 1.433534 GCTCAGTCTTTCGAAGGGTG 58.566 55.000 7.49 5.91 0.00 4.61
272 273 1.270358 GCTCAGTCTTTCGAAGGGTGT 60.270 52.381 7.49 0.00 0.00 4.16
273 274 2.408050 CTCAGTCTTTCGAAGGGTGTG 58.592 52.381 7.49 3.19 0.00 3.82
274 275 0.868406 CAGTCTTTCGAAGGGTGTGC 59.132 55.000 7.49 0.00 0.00 4.57
275 276 0.600255 AGTCTTTCGAAGGGTGTGCG 60.600 55.000 7.49 0.00 0.00 5.34
276 277 0.878961 GTCTTTCGAAGGGTGTGCGT 60.879 55.000 7.49 0.00 0.00 5.24
277 278 0.878523 TCTTTCGAAGGGTGTGCGTG 60.879 55.000 7.49 0.00 0.00 5.34
278 279 1.153329 TTTCGAAGGGTGTGCGTGT 60.153 52.632 0.00 0.00 0.00 4.49
279 280 1.433053 TTTCGAAGGGTGTGCGTGTG 61.433 55.000 0.00 0.00 0.00 3.82
280 281 4.012895 CGAAGGGTGTGCGTGTGC 62.013 66.667 0.00 0.00 43.20 4.57
290 291 3.089784 GCGTGTGCGTTCATAGGG 58.910 61.111 0.00 0.00 40.81 3.53
291 292 2.461110 GCGTGTGCGTTCATAGGGG 61.461 63.158 0.00 0.00 40.81 4.79
292 293 1.079405 CGTGTGCGTTCATAGGGGT 60.079 57.895 0.00 0.00 0.00 4.95
293 294 1.358725 CGTGTGCGTTCATAGGGGTG 61.359 60.000 0.00 0.00 0.00 4.61
294 295 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
295 296 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
296 297 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
297 298 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
298 299 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
299 300 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
300 301 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
301 302 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
302 303 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
303 304 2.758130 TCATAGGGGTGAGTGTATGCA 58.242 47.619 0.00 0.00 0.00 3.96
304 305 2.434336 TCATAGGGGTGAGTGTATGCAC 59.566 50.000 5.71 5.71 45.57 4.57
316 317 4.631133 GTGTATGCACGTGTATATGAGC 57.369 45.455 25.81 15.09 35.75 4.26
317 318 3.119628 GTGTATGCACGTGTATATGAGCG 59.880 47.826 25.81 0.00 35.75 5.03
318 319 1.139989 ATGCACGTGTATATGAGCGC 58.860 50.000 18.03 0.00 32.85 5.92
319 320 0.102300 TGCACGTGTATATGAGCGCT 59.898 50.000 11.27 11.27 32.85 5.92
320 321 1.209128 GCACGTGTATATGAGCGCTT 58.791 50.000 13.26 0.00 0.00 4.68
321 322 1.071239 GCACGTGTATATGAGCGCTTG 60.071 52.381 13.26 2.09 0.00 4.01
322 323 1.071239 CACGTGTATATGAGCGCTTGC 60.071 52.381 13.26 0.00 39.58 4.01
323 324 0.159554 CGTGTATATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
324 325 1.209128 GTGTATATGAGCGCTTGCGT 58.791 50.000 13.26 3.24 45.69 5.24
325 326 1.190323 GTGTATATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
326 327 1.067060 TGTATATGAGCGCTTGCGTCT 59.933 47.619 13.26 13.17 45.69 4.18
327 328 2.292292 TGTATATGAGCGCTTGCGTCTA 59.708 45.455 13.26 0.00 45.69 2.59
328 329 2.732412 ATATGAGCGCTTGCGTCTAT 57.268 45.000 13.26 10.15 45.69 1.98
329 330 3.850122 ATATGAGCGCTTGCGTCTATA 57.150 42.857 13.26 11.75 45.69 1.31
330 331 1.772182 ATGAGCGCTTGCGTCTATAC 58.228 50.000 13.26 0.00 45.69 1.47
331 332 0.738975 TGAGCGCTTGCGTCTATACT 59.261 50.000 13.26 3.73 45.69 2.12
332 333 1.124462 GAGCGCTTGCGTCTATACTG 58.876 55.000 13.26 0.00 45.69 2.74
333 334 0.456221 AGCGCTTGCGTCTATACTGT 59.544 50.000 16.38 0.00 45.69 3.55
334 335 1.674441 AGCGCTTGCGTCTATACTGTA 59.326 47.619 16.38 0.00 45.69 2.74
335 336 2.293677 AGCGCTTGCGTCTATACTGTAT 59.706 45.455 16.38 5.53 45.69 2.29
336 337 3.050619 GCGCTTGCGTCTATACTGTATT 58.949 45.455 16.38 0.00 0.00 1.89
337 338 4.023450 AGCGCTTGCGTCTATACTGTATTA 60.023 41.667 16.38 0.00 45.69 0.98
338 339 4.678287 GCGCTTGCGTCTATACTGTATTAA 59.322 41.667 16.38 0.00 0.00 1.40
339 340 5.174398 GCGCTTGCGTCTATACTGTATTAAA 59.826 40.000 16.38 0.00 0.00 1.52
340 341 6.291955 GCGCTTGCGTCTATACTGTATTAAAA 60.292 38.462 16.38 0.00 0.00 1.52
424 427 3.904800 AAAACACCTCCTTTTGGGTTG 57.095 42.857 0.00 0.00 40.87 3.77
425 428 1.788229 AACACCTCCTTTTGGGTTGG 58.212 50.000 0.00 0.00 40.87 3.77
449 452 3.475494 TCACACCGCCACACACCT 61.475 61.111 0.00 0.00 0.00 4.00
450 453 2.134933 TCACACCGCCACACACCTA 61.135 57.895 0.00 0.00 0.00 3.08
451 454 1.959226 CACACCGCCACACACCTAC 60.959 63.158 0.00 0.00 0.00 3.18
452 455 2.138179 ACACCGCCACACACCTACT 61.138 57.895 0.00 0.00 0.00 2.57
453 456 0.828762 ACACCGCCACACACCTACTA 60.829 55.000 0.00 0.00 0.00 1.82
454 457 0.319083 CACCGCCACACACCTACTAA 59.681 55.000 0.00 0.00 0.00 2.24
455 458 1.050204 ACCGCCACACACCTACTAAA 58.950 50.000 0.00 0.00 0.00 1.85
456 459 1.270465 ACCGCCACACACCTACTAAAC 60.270 52.381 0.00 0.00 0.00 2.01
457 460 1.435577 CGCCACACACCTACTAAACC 58.564 55.000 0.00 0.00 0.00 3.27
458 461 1.817357 GCCACACACCTACTAAACCC 58.183 55.000 0.00 0.00 0.00 4.11
461 464 2.409975 CACACACCTACTAAACCCACG 58.590 52.381 0.00 0.00 0.00 4.94
474 477 4.785453 CCACGCCCTTCTGCCTCC 62.785 72.222 0.00 0.00 0.00 4.30
486 489 0.320683 CTGCCTCCATTCGTCACACA 60.321 55.000 0.00 0.00 0.00 3.72
490 493 2.426522 CCTCCATTCGTCACACAACAT 58.573 47.619 0.00 0.00 0.00 2.71
514 517 7.855784 TCATACTTTCTTCTATATGGCCAGA 57.144 36.000 13.05 7.22 0.00 3.86
515 518 7.901029 TCATACTTTCTTCTATATGGCCAGAG 58.099 38.462 13.05 8.76 0.00 3.35
521 524 3.196415 TCTATATGGCCAGAGCATCCT 57.804 47.619 13.05 0.00 42.56 3.24
522 525 3.524826 TCTATATGGCCAGAGCATCCTT 58.475 45.455 13.05 0.00 42.56 3.36
537 540 4.530161 AGCATCCTTCCTATGATCACCTAC 59.470 45.833 0.00 0.00 0.00 3.18
544 547 3.072211 CCTATGATCACCTACGCGTCTA 58.928 50.000 18.63 0.00 0.00 2.59
560 563 4.613167 CGCGTCTATGGGTGTCTATACTTC 60.613 50.000 0.00 0.00 0.00 3.01
577 587 4.862641 ACTTCCCTAACTTGTATGCCAT 57.137 40.909 0.00 0.00 0.00 4.40
581 591 5.147330 TCCCTAACTTGTATGCCATATCG 57.853 43.478 0.00 0.00 0.00 2.92
604 614 2.101582 CACATAAGCTCGCTCCTAGGTT 59.898 50.000 9.08 0.00 38.22 3.50
609 619 1.226717 CTCGCTCCTAGGTTCACGC 60.227 63.158 9.08 4.40 0.00 5.34
610 620 2.579787 CGCTCCTAGGTTCACGCG 60.580 66.667 9.08 3.53 34.50 6.01
632 642 0.306533 CGGTGTGTTTTTCTCGGGTG 59.693 55.000 0.00 0.00 0.00 4.61
639 678 2.494073 TGTTTTTCTCGGGTGTGCTTTT 59.506 40.909 0.00 0.00 0.00 2.27
641 680 3.974871 TTTTCTCGGGTGTGCTTTTAC 57.025 42.857 0.00 0.00 0.00 2.01
647 686 1.244816 GGGTGTGCTTTTACCTCCAC 58.755 55.000 0.00 0.00 37.15 4.02
669 708 2.069273 CTCGCAAAGTCATCGTTTCCT 58.931 47.619 0.00 0.00 0.00 3.36
674 713 3.607078 GCAAAGTCATCGTTTCCTGTCAC 60.607 47.826 0.00 0.00 0.00 3.67
683 728 2.155732 CGTTTCCTGTCACGTCATCTTG 59.844 50.000 0.00 0.00 0.00 3.02
705 750 5.627135 TGGACGAAAATTCCTTTCCTTACT 58.373 37.500 0.00 0.00 40.42 2.24
716 761 3.694566 CCTTTCCTTACTTGCCATACACC 59.305 47.826 0.00 0.00 0.00 4.16
717 762 3.359695 TTCCTTACTTGCCATACACCC 57.640 47.619 0.00 0.00 0.00 4.61
733 778 0.033011 ACCCCAGCGACTACAGATCT 60.033 55.000 0.00 0.00 0.00 2.75
734 779 0.387202 CCCCAGCGACTACAGATCTG 59.613 60.000 21.37 21.37 0.00 2.90
790 835 2.582436 GGATCTCCCGCCGAAACA 59.418 61.111 0.00 0.00 0.00 2.83
803 848 1.425412 CGAAACAACCTCGTACCAGG 58.575 55.000 4.79 4.79 39.80 4.45
805 850 2.410939 GAAACAACCTCGTACCAGGTC 58.589 52.381 12.97 0.00 46.97 3.85
806 851 1.416243 AACAACCTCGTACCAGGTCA 58.584 50.000 12.97 0.00 46.97 4.02
807 852 0.677842 ACAACCTCGTACCAGGTCAC 59.322 55.000 12.97 0.00 46.97 3.67
808 853 0.037605 CAACCTCGTACCAGGTCACC 60.038 60.000 12.97 0.00 46.97 4.02
809 854 1.190178 AACCTCGTACCAGGTCACCC 61.190 60.000 12.97 0.00 46.97 4.61
810 855 2.356780 CCTCGTACCAGGTCACCCC 61.357 68.421 0.00 0.00 0.00 4.95
811 856 1.608336 CTCGTACCAGGTCACCCCA 60.608 63.158 0.00 0.00 34.66 4.96
812 857 1.885163 CTCGTACCAGGTCACCCCAC 61.885 65.000 0.00 0.00 34.66 4.61
847 892 1.153168 CCCATCCACATCCGACACC 60.153 63.158 0.00 0.00 0.00 4.16
873 919 1.990060 CCACCAGTCTCCACCCGAT 60.990 63.158 0.00 0.00 0.00 4.18
879 925 2.125961 GTCTCCACCCGATACGCCT 61.126 63.158 0.00 0.00 0.00 5.52
979 1501 0.391130 GCACCTGCCGTGACTTATGA 60.391 55.000 5.27 0.00 46.20 2.15
988 1510 0.457853 GTGACTTATGACTCGCCGCA 60.458 55.000 0.00 0.00 0.00 5.69
1007 1532 2.101575 GCGGTCAGCGATGTCGTA 59.898 61.111 16.86 0.00 42.22 3.43
1008 1533 2.222217 GCGGTCAGCGATGTCGTAC 61.222 63.158 16.86 1.96 42.22 3.67
1009 1534 1.428219 CGGTCAGCGATGTCGTACT 59.572 57.895 0.00 0.00 42.22 2.73
1010 1535 0.179171 CGGTCAGCGATGTCGTACTT 60.179 55.000 0.00 0.00 42.22 2.24
1011 1536 1.269166 GGTCAGCGATGTCGTACTTG 58.731 55.000 0.00 0.00 42.22 3.16
1012 1537 1.269166 GTCAGCGATGTCGTACTTGG 58.731 55.000 0.00 0.00 42.22 3.61
1013 1538 1.135489 GTCAGCGATGTCGTACTTGGA 60.135 52.381 0.00 0.00 42.22 3.53
1021 1555 0.454600 GTCGTACTTGGAGGATGCGA 59.545 55.000 0.00 0.00 0.00 5.10
1026 1560 1.519455 CTTGGAGGATGCGACGGAC 60.519 63.158 0.00 0.00 0.00 4.79
1030 1564 2.437895 AGGATGCGACGGACTCGA 60.438 61.111 0.00 0.00 46.14 4.04
1045 1579 1.418264 ACTCGAGATCGGAGGATGAGA 59.582 52.381 21.68 0.00 40.29 3.27
1046 1580 1.804151 CTCGAGATCGGAGGATGAGAC 59.196 57.143 6.58 0.00 40.29 3.36
1047 1581 0.515127 CGAGATCGGAGGATGAGACG 59.485 60.000 0.00 0.00 35.37 4.18
1051 1585 0.183971 ATCGGAGGATGAGACGGACT 59.816 55.000 0.00 0.00 0.00 3.85
1052 1586 0.464013 TCGGAGGATGAGACGGACTC 60.464 60.000 0.38 0.38 45.11 3.36
1053 1587 0.464735 CGGAGGATGAGACGGACTCT 60.465 60.000 8.81 0.00 45.13 3.24
1055 1589 1.028905 GAGGATGAGACGGACTCTGG 58.971 60.000 8.81 0.00 45.13 3.86
1056 1590 0.626382 AGGATGAGACGGACTCTGGA 59.374 55.000 8.81 0.00 45.13 3.86
1057 1591 1.216678 AGGATGAGACGGACTCTGGAT 59.783 52.381 8.81 0.00 45.13 3.41
1058 1592 1.611491 GGATGAGACGGACTCTGGATC 59.389 57.143 8.81 3.99 45.13 3.36
1059 1593 1.265635 GATGAGACGGACTCTGGATCG 59.734 57.143 8.81 0.00 45.13 3.69
1060 1594 0.748367 TGAGACGGACTCTGGATCGG 60.748 60.000 8.81 0.00 45.13 4.18
1061 1595 0.464013 GAGACGGACTCTGGATCGGA 60.464 60.000 0.14 0.00 41.94 4.55
1062 1596 0.464735 AGACGGACTCTGGATCGGAG 60.465 60.000 11.28 11.28 42.15 4.63
1078 1612 1.466950 CGGAGGATGACGAGATAGCTC 59.533 57.143 0.00 0.00 37.81 4.09
1079 1613 2.509569 GGAGGATGACGAGATAGCTCA 58.490 52.381 8.99 0.00 41.36 4.26
1206 1740 2.683933 TTCCTCACCGGCCTCCTC 60.684 66.667 0.00 0.00 0.00 3.71
1391 1925 2.033141 GCTGAGCAGGCACCTCAA 59.967 61.111 0.00 0.00 38.73 3.02
1434 1974 1.812571 ACCAGTTCGATGAACAATGCC 59.187 47.619 11.81 0.00 44.11 4.40
1436 1976 2.424601 CCAGTTCGATGAACAATGCCAT 59.575 45.455 11.81 0.00 44.11 4.40
1441 1981 1.831343 GATGAACAATGCCATCACGC 58.169 50.000 10.11 0.00 39.08 5.34
1443 1983 0.952984 TGAACAATGCCATCACGCGA 60.953 50.000 15.93 0.00 0.00 5.87
1446 1986 2.436469 AATGCCATCACGCGAGCA 60.436 55.556 15.93 13.93 40.00 4.26
1468 2008 2.508439 CGGGAACATCCACGACGG 60.508 66.667 0.00 0.00 38.64 4.79
1636 2181 1.757699 AGATCGGCAAGGAAGAGGTAC 59.242 52.381 0.00 0.00 0.00 3.34
1638 2183 1.810030 CGGCAAGGAAGAGGTACGC 60.810 63.158 0.00 0.00 0.00 4.42
1644 2189 1.177256 AGGAAGAGGTACGCACGTGT 61.177 55.000 18.38 0.00 0.00 4.49
1645 2190 0.319297 GGAAGAGGTACGCACGTGTT 60.319 55.000 18.38 7.24 0.00 3.32
1658 2203 0.806241 ACGTGTTGTGCTTCGGTTTT 59.194 45.000 0.00 0.00 0.00 2.43
1718 2263 2.689553 TCTCTGCATGCGTTGGAATA 57.310 45.000 14.09 0.00 0.00 1.75
1719 2264 2.984562 TCTCTGCATGCGTTGGAATAA 58.015 42.857 14.09 0.00 0.00 1.40
1772 2319 1.668151 GTCCAAGACCGTGCTGACC 60.668 63.158 0.00 0.00 0.00 4.02
1793 2340 3.428725 CCGATGTCTTCCTCAAGAGTCAG 60.429 52.174 0.00 0.00 39.45 3.51
1944 2491 4.676196 GCTGCCGTGATGAATCAAAGATTT 60.676 41.667 0.00 0.00 38.75 2.17
1962 2510 4.883006 AGATTTTGCCAATGTTGCTTTTGT 59.117 33.333 0.00 0.00 0.00 2.83
1966 2514 3.341823 TGCCAATGTTGCTTTTGTTGTT 58.658 36.364 0.00 0.00 0.00 2.83
1967 2515 3.373439 TGCCAATGTTGCTTTTGTTGTTC 59.627 39.130 0.00 0.00 0.00 3.18
1981 2529 2.875933 TGTTGTTCCTCGGTTGATTGTC 59.124 45.455 0.00 0.00 0.00 3.18
1995 2543 2.567169 TGATTGTCTCGATGAGTGGGTT 59.433 45.455 0.00 0.00 0.00 4.11
2058 2606 4.319177 GGATCAGCATACACAATCCCTAC 58.681 47.826 0.00 0.00 31.56 3.18
2104 2654 4.949238 ACTGTAACATAATCAGCCATGCAA 59.051 37.500 0.00 0.00 33.12 4.08
2109 4232 3.702548 ACATAATCAGCCATGCAACACAT 59.297 39.130 0.00 0.00 40.66 3.21
2110 4233 4.888823 ACATAATCAGCCATGCAACACATA 59.111 37.500 0.00 0.00 36.64 2.29
2118 4241 3.273434 CCATGCAACACATAGTAGCAGT 58.727 45.455 0.00 0.00 36.64 4.40
2203 5375 5.235516 GGTTCTAATGTCGGTCTGAAGAAA 58.764 41.667 0.00 0.00 0.00 2.52
2204 5376 5.875359 GGTTCTAATGTCGGTCTGAAGAAAT 59.125 40.000 0.00 0.00 0.00 2.17
2205 5377 7.039882 GGTTCTAATGTCGGTCTGAAGAAATA 58.960 38.462 0.00 0.00 0.00 1.40
2262 5439 3.889859 ATAACCTGGGTGATGCATGAT 57.110 42.857 2.46 0.00 0.00 2.45
2327 5504 1.488812 AGGTAGTTCACACAAGTGGCA 59.511 47.619 5.08 0.00 45.91 4.92
2369 5546 0.737219 GACAATCTGGGTGCTGCATC 59.263 55.000 5.27 4.51 0.00 3.91
2384 5561 5.008911 GTGCTGCATCCATGTTATTGTATCA 59.991 40.000 5.27 0.00 0.00 2.15
2474 5661 1.758936 TCATTGCAGGGATGCAGAAG 58.241 50.000 2.87 0.00 46.21 2.85
2718 5907 9.508567 GCTTCTTTCTTAATGATCAATTGGTAC 57.491 33.333 5.42 0.00 0.00 3.34
2732 5922 1.784358 TGGTACGGTAGGCATAAGCT 58.216 50.000 0.00 0.00 41.70 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.054751 GGTCACTAAGGAGCCATTAATAAACT 58.945 38.462 0.00 0.00 0.00 2.66
1 2 6.826741 TGGTCACTAAGGAGCCATTAATAAAC 59.173 38.462 0.00 0.00 34.46 2.01
2 3 6.826741 GTGGTCACTAAGGAGCCATTAATAAA 59.173 38.462 0.00 0.00 34.46 1.40
3 4 6.069905 TGTGGTCACTAAGGAGCCATTAATAA 60.070 38.462 2.66 0.00 34.46 1.40
4 5 5.427157 TGTGGTCACTAAGGAGCCATTAATA 59.573 40.000 2.66 0.00 34.46 0.98
5 6 4.227300 TGTGGTCACTAAGGAGCCATTAAT 59.773 41.667 2.66 0.00 34.46 1.40
6 7 3.585289 TGTGGTCACTAAGGAGCCATTAA 59.415 43.478 2.66 0.00 34.46 1.40
7 8 3.178046 TGTGGTCACTAAGGAGCCATTA 58.822 45.455 2.66 0.00 34.46 1.90
8 9 1.985159 TGTGGTCACTAAGGAGCCATT 59.015 47.619 2.66 0.00 34.46 3.16
9 10 1.656587 TGTGGTCACTAAGGAGCCAT 58.343 50.000 2.66 0.00 34.46 4.40
10 11 1.656587 ATGTGGTCACTAAGGAGCCA 58.343 50.000 2.66 0.00 34.46 4.75
11 12 2.158943 GGTATGTGGTCACTAAGGAGCC 60.159 54.545 2.66 0.00 34.46 4.70
12 13 2.766828 AGGTATGTGGTCACTAAGGAGC 59.233 50.000 2.66 0.00 35.89 4.70
13 14 4.023980 TGAGGTATGTGGTCACTAAGGAG 58.976 47.826 2.66 0.00 0.00 3.69
14 15 3.767673 GTGAGGTATGTGGTCACTAAGGA 59.232 47.826 2.66 0.00 38.06 3.36
15 16 3.118738 GGTGAGGTATGTGGTCACTAAGG 60.119 52.174 2.66 0.00 40.43 2.69
16 17 3.513912 TGGTGAGGTATGTGGTCACTAAG 59.486 47.826 2.66 0.00 40.43 2.18
17 18 3.259876 GTGGTGAGGTATGTGGTCACTAA 59.740 47.826 2.66 0.00 40.43 2.24
18 19 2.829720 GTGGTGAGGTATGTGGTCACTA 59.170 50.000 2.66 0.00 40.43 2.74
19 20 1.623811 GTGGTGAGGTATGTGGTCACT 59.376 52.381 2.66 0.00 40.43 3.41
20 21 1.346395 TGTGGTGAGGTATGTGGTCAC 59.654 52.381 0.00 0.00 39.96 3.67
21 22 1.723288 TGTGGTGAGGTATGTGGTCA 58.277 50.000 0.00 0.00 0.00 4.02
22 23 2.851263 TTGTGGTGAGGTATGTGGTC 57.149 50.000 0.00 0.00 0.00 4.02
23 24 3.219281 GTTTTGTGGTGAGGTATGTGGT 58.781 45.455 0.00 0.00 0.00 4.16
24 25 2.225491 CGTTTTGTGGTGAGGTATGTGG 59.775 50.000 0.00 0.00 0.00 4.17
25 26 2.225491 CCGTTTTGTGGTGAGGTATGTG 59.775 50.000 0.00 0.00 0.00 3.21
26 27 2.500229 CCGTTTTGTGGTGAGGTATGT 58.500 47.619 0.00 0.00 0.00 2.29
27 28 1.810151 CCCGTTTTGTGGTGAGGTATG 59.190 52.381 0.00 0.00 0.00 2.39
28 29 1.700739 TCCCGTTTTGTGGTGAGGTAT 59.299 47.619 0.00 0.00 0.00 2.73
29 30 1.129917 TCCCGTTTTGTGGTGAGGTA 58.870 50.000 0.00 0.00 0.00 3.08
30 31 0.256464 TTCCCGTTTTGTGGTGAGGT 59.744 50.000 0.00 0.00 0.00 3.85
31 32 0.951558 CTTCCCGTTTTGTGGTGAGG 59.048 55.000 0.00 0.00 0.00 3.86
32 33 0.951558 CCTTCCCGTTTTGTGGTGAG 59.048 55.000 0.00 0.00 0.00 3.51
33 34 1.104577 GCCTTCCCGTTTTGTGGTGA 61.105 55.000 0.00 0.00 0.00 4.02
34 35 1.362355 GCCTTCCCGTTTTGTGGTG 59.638 57.895 0.00 0.00 0.00 4.17
35 36 1.830847 GGCCTTCCCGTTTTGTGGT 60.831 57.895 0.00 0.00 0.00 4.16
36 37 3.047735 GGCCTTCCCGTTTTGTGG 58.952 61.111 0.00 0.00 0.00 4.17
45 46 3.508840 CATGCGTTCGGCCTTCCC 61.509 66.667 0.00 0.00 42.61 3.97
46 47 1.376609 AATCATGCGTTCGGCCTTCC 61.377 55.000 0.00 0.00 42.61 3.46
47 48 0.028110 GAATCATGCGTTCGGCCTTC 59.972 55.000 0.00 0.00 42.61 3.46
48 49 0.676466 TGAATCATGCGTTCGGCCTT 60.676 50.000 0.00 0.00 42.61 4.35
49 50 1.078497 TGAATCATGCGTTCGGCCT 60.078 52.632 0.00 0.00 42.61 5.19
50 51 1.062525 GTGAATCATGCGTTCGGCC 59.937 57.895 0.00 0.00 42.61 6.13
51 52 0.521242 GTGTGAATCATGCGTTCGGC 60.521 55.000 0.00 3.56 43.96 5.54
52 53 0.096976 GGTGTGAATCATGCGTTCGG 59.903 55.000 0.00 0.00 0.00 4.30
53 54 0.795698 TGGTGTGAATCATGCGTTCG 59.204 50.000 0.00 0.00 0.00 3.95
54 55 2.584791 GTTGGTGTGAATCATGCGTTC 58.415 47.619 4.32 4.32 0.00 3.95
55 56 1.269448 GGTTGGTGTGAATCATGCGTT 59.731 47.619 0.00 0.00 0.00 4.84
56 57 0.881118 GGTTGGTGTGAATCATGCGT 59.119 50.000 0.00 0.00 0.00 5.24
57 58 1.135603 CAGGTTGGTGTGAATCATGCG 60.136 52.381 0.00 0.00 0.00 4.73
58 59 1.888512 ACAGGTTGGTGTGAATCATGC 59.111 47.619 0.00 0.00 0.00 4.06
73 74 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
74 75 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
75 76 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
76 77 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
77 78 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
78 79 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
79 80 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
80 81 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
81 82 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
82 83 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
83 84 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
84 85 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
85 86 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
86 87 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
87 88 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
103 104 1.062488 ATCCTGGTGGGCTGGGATAC 61.062 60.000 0.00 0.00 36.88 2.24
104 105 0.328450 AATCCTGGTGGGCTGGGATA 60.328 55.000 0.00 0.00 37.57 2.59
105 106 1.623686 AATCCTGGTGGGCTGGGAT 60.624 57.895 0.00 0.00 39.91 3.85
106 107 2.204291 AATCCTGGTGGGCTGGGA 60.204 61.111 0.00 0.00 34.39 4.37
107 108 2.153898 TTGAATCCTGGTGGGCTGGG 62.154 60.000 0.00 0.00 34.39 4.45
108 109 0.682209 CTTGAATCCTGGTGGGCTGG 60.682 60.000 0.00 0.00 34.39 4.85
109 110 0.038744 ACTTGAATCCTGGTGGGCTG 59.961 55.000 0.00 0.00 34.39 4.85
110 111 0.329596 GACTTGAATCCTGGTGGGCT 59.670 55.000 0.00 0.00 34.39 5.19
111 112 0.681243 GGACTTGAATCCTGGTGGGC 60.681 60.000 0.00 0.00 35.68 5.36
112 113 3.577389 GGACTTGAATCCTGGTGGG 57.423 57.895 0.00 0.00 35.68 4.61
119 120 1.743996 GAGCACCAGGACTTGAATCC 58.256 55.000 0.00 0.00 39.28 3.01
120 121 1.363744 CGAGCACCAGGACTTGAATC 58.636 55.000 0.00 0.00 0.00 2.52
121 122 0.674895 GCGAGCACCAGGACTTGAAT 60.675 55.000 0.00 0.00 0.00 2.57
122 123 1.301716 GCGAGCACCAGGACTTGAA 60.302 57.895 0.00 0.00 0.00 2.69
123 124 1.830587 ATGCGAGCACCAGGACTTGA 61.831 55.000 0.00 0.00 0.00 3.02
124 125 0.957395 AATGCGAGCACCAGGACTTG 60.957 55.000 0.00 0.00 0.00 3.16
125 126 0.250901 AAATGCGAGCACCAGGACTT 60.251 50.000 0.00 0.00 0.00 3.01
126 127 0.613260 TAAATGCGAGCACCAGGACT 59.387 50.000 0.00 0.00 0.00 3.85
127 128 1.668419 ATAAATGCGAGCACCAGGAC 58.332 50.000 0.00 0.00 0.00 3.85
128 129 2.288666 GAATAAATGCGAGCACCAGGA 58.711 47.619 0.00 0.00 0.00 3.86
129 130 1.334869 GGAATAAATGCGAGCACCAGG 59.665 52.381 0.00 0.00 0.00 4.45
130 131 2.032550 CAGGAATAAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
131 132 2.016318 CAGGAATAAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
132 133 1.334869 CCAGGAATAAATGCGAGCACC 59.665 52.381 0.00 0.00 0.00 5.01
133 134 2.032178 GTCCAGGAATAAATGCGAGCAC 59.968 50.000 0.00 0.00 0.00 4.40
134 135 2.092968 AGTCCAGGAATAAATGCGAGCA 60.093 45.455 0.00 0.00 0.00 4.26
135 136 2.565841 AGTCCAGGAATAAATGCGAGC 58.434 47.619 0.00 0.00 0.00 5.03
136 137 6.867662 AAATAGTCCAGGAATAAATGCGAG 57.132 37.500 0.00 0.00 0.00 5.03
137 138 7.444183 CCTAAAATAGTCCAGGAATAAATGCGA 59.556 37.037 0.00 0.00 0.00 5.10
138 139 7.444183 TCCTAAAATAGTCCAGGAATAAATGCG 59.556 37.037 0.00 0.00 34.25 4.73
139 140 8.691661 TCCTAAAATAGTCCAGGAATAAATGC 57.308 34.615 0.00 0.00 34.25 3.56
143 144 9.862149 GGAAATCCTAAAATAGTCCAGGAATAA 57.138 33.333 0.00 0.00 40.48 1.40
144 145 8.154856 CGGAAATCCTAAAATAGTCCAGGAATA 58.845 37.037 0.00 0.00 40.48 1.75
145 146 6.998673 CGGAAATCCTAAAATAGTCCAGGAAT 59.001 38.462 0.00 0.00 40.48 3.01
146 147 6.354130 CGGAAATCCTAAAATAGTCCAGGAA 58.646 40.000 0.00 0.00 40.48 3.36
147 148 5.163237 CCGGAAATCCTAAAATAGTCCAGGA 60.163 44.000 0.00 0.00 41.31 3.86
148 149 5.063880 CCGGAAATCCTAAAATAGTCCAGG 58.936 45.833 0.00 0.00 0.00 4.45
149 150 4.515567 GCCGGAAATCCTAAAATAGTCCAG 59.484 45.833 5.05 0.00 0.00 3.86
150 151 4.457466 GCCGGAAATCCTAAAATAGTCCA 58.543 43.478 5.05 0.00 0.00 4.02
151 152 3.497262 CGCCGGAAATCCTAAAATAGTCC 59.503 47.826 5.05 0.00 0.00 3.85
152 153 4.374399 TCGCCGGAAATCCTAAAATAGTC 58.626 43.478 5.05 0.00 0.00 2.59
153 154 4.411256 TCGCCGGAAATCCTAAAATAGT 57.589 40.909 5.05 0.00 0.00 2.12
154 155 4.378459 GCATCGCCGGAAATCCTAAAATAG 60.378 45.833 5.05 0.00 0.00 1.73
155 156 3.500680 GCATCGCCGGAAATCCTAAAATA 59.499 43.478 5.05 0.00 0.00 1.40
156 157 2.293399 GCATCGCCGGAAATCCTAAAAT 59.707 45.455 5.05 0.00 0.00 1.82
157 158 1.673920 GCATCGCCGGAAATCCTAAAA 59.326 47.619 5.05 0.00 0.00 1.52
158 159 1.305201 GCATCGCCGGAAATCCTAAA 58.695 50.000 5.05 0.00 0.00 1.85
159 160 0.878523 CGCATCGCCGGAAATCCTAA 60.879 55.000 5.05 0.00 0.00 2.69
160 161 1.300620 CGCATCGCCGGAAATCCTA 60.301 57.895 5.05 0.00 0.00 2.94
161 162 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
172 173 1.220169 CTCCTCCTGAATGCGCATCG 61.220 60.000 25.53 14.74 0.00 3.84
173 174 0.105593 TCTCCTCCTGAATGCGCATC 59.894 55.000 25.53 17.12 0.00 3.91
174 175 0.763652 ATCTCCTCCTGAATGCGCAT 59.236 50.000 19.28 19.28 0.00 4.73
175 176 0.179065 CATCTCCTCCTGAATGCGCA 60.179 55.000 14.96 14.96 0.00 6.09
176 177 0.179062 ACATCTCCTCCTGAATGCGC 60.179 55.000 0.00 0.00 0.00 6.09
177 178 2.208431 GAACATCTCCTCCTGAATGCG 58.792 52.381 0.00 0.00 0.00 4.73
178 179 2.570135 GGAACATCTCCTCCTGAATGC 58.430 52.381 0.00 0.00 41.61 3.56
179 180 2.484417 CGGGAACATCTCCTCCTGAATG 60.484 54.545 0.00 0.00 44.68 2.67
180 181 1.765314 CGGGAACATCTCCTCCTGAAT 59.235 52.381 0.00 0.00 44.68 2.57
181 182 1.195115 CGGGAACATCTCCTCCTGAA 58.805 55.000 0.00 0.00 44.68 3.02
182 183 0.041238 ACGGGAACATCTCCTCCTGA 59.959 55.000 3.96 0.00 44.68 3.86
183 184 0.461961 GACGGGAACATCTCCTCCTG 59.538 60.000 0.00 0.00 44.68 3.86
184 185 1.038130 CGACGGGAACATCTCCTCCT 61.038 60.000 0.00 0.00 44.68 3.69
185 186 1.035932 TCGACGGGAACATCTCCTCC 61.036 60.000 0.00 0.00 44.68 4.30
186 187 0.100861 GTCGACGGGAACATCTCCTC 59.899 60.000 0.00 0.00 44.68 3.71
187 188 1.654954 CGTCGACGGGAACATCTCCT 61.655 60.000 29.70 0.00 44.68 3.69
188 189 1.226603 CGTCGACGGGAACATCTCC 60.227 63.158 29.70 0.00 44.54 3.71
189 190 0.522915 GTCGTCGACGGGAACATCTC 60.523 60.000 35.05 12.17 40.29 2.75
190 191 1.505353 GTCGTCGACGGGAACATCT 59.495 57.895 35.05 0.00 40.29 2.90
191 192 4.068302 GTCGTCGACGGGAACATC 57.932 61.111 35.05 14.32 40.29 3.06
206 207 0.167689 GTCACCGTAGACACCTCGTC 59.832 60.000 0.16 0.00 45.77 4.20
207 208 0.250640 AGTCACCGTAGACACCTCGT 60.251 55.000 7.16 0.00 40.98 4.18
208 209 0.447011 GAGTCACCGTAGACACCTCG 59.553 60.000 7.16 0.00 40.98 4.63
209 210 0.810016 GGAGTCACCGTAGACACCTC 59.190 60.000 11.78 0.59 43.34 3.85
210 211 2.958513 GGAGTCACCGTAGACACCT 58.041 57.895 11.78 0.00 43.34 4.00
220 221 5.163754 CCATCTTGAAATTTACGGAGTCACC 60.164 44.000 0.00 0.00 43.93 4.02
221 222 5.411669 ACCATCTTGAAATTTACGGAGTCAC 59.588 40.000 0.00 0.00 43.93 3.67
222 223 5.556915 ACCATCTTGAAATTTACGGAGTCA 58.443 37.500 0.00 0.00 43.93 3.41
223 224 7.630924 CATACCATCTTGAAATTTACGGAGTC 58.369 38.462 0.00 0.00 43.93 3.36
224 225 8.809048 GGCATACCATCTTGAAATTTACGGAGT 61.809 40.741 0.00 0.00 39.80 3.85
225 226 6.430451 GCATACCATCTTGAAATTTACGGAG 58.570 40.000 0.00 0.00 0.00 4.63
226 227 5.298276 GGCATACCATCTTGAAATTTACGGA 59.702 40.000 0.00 0.00 35.26 4.69
227 228 5.519722 GGCATACCATCTTGAAATTTACGG 58.480 41.667 0.00 0.00 35.26 4.02
228 229 5.204833 CGGCATACCATCTTGAAATTTACG 58.795 41.667 0.00 0.00 34.57 3.18
229 230 5.519722 CCGGCATACCATCTTGAAATTTAC 58.480 41.667 0.00 0.00 34.57 2.01
230 231 4.037446 GCCGGCATACCATCTTGAAATTTA 59.963 41.667 24.80 0.00 34.57 1.40
231 232 3.181476 GCCGGCATACCATCTTGAAATTT 60.181 43.478 24.80 0.00 34.57 1.82
232 233 2.362077 GCCGGCATACCATCTTGAAATT 59.638 45.455 24.80 0.00 34.57 1.82
233 234 1.956477 GCCGGCATACCATCTTGAAAT 59.044 47.619 24.80 0.00 34.57 2.17
234 235 1.064758 AGCCGGCATACCATCTTGAAA 60.065 47.619 31.54 0.00 34.57 2.69
235 236 0.546122 AGCCGGCATACCATCTTGAA 59.454 50.000 31.54 0.00 34.57 2.69
236 237 0.106708 GAGCCGGCATACCATCTTGA 59.893 55.000 31.54 0.00 34.57 3.02
237 238 0.179048 TGAGCCGGCATACCATCTTG 60.179 55.000 31.54 0.00 34.57 3.02
238 239 0.107456 CTGAGCCGGCATACCATCTT 59.893 55.000 31.54 3.33 34.57 2.40
239 240 1.050988 ACTGAGCCGGCATACCATCT 61.051 55.000 31.54 4.27 34.57 2.90
240 241 0.601311 GACTGAGCCGGCATACCATC 60.601 60.000 31.54 16.99 34.57 3.51
241 242 1.050988 AGACTGAGCCGGCATACCAT 61.051 55.000 31.54 6.18 34.57 3.55
242 243 1.264749 AAGACTGAGCCGGCATACCA 61.265 55.000 31.54 18.81 34.57 3.25
243 244 0.107654 AAAGACTGAGCCGGCATACC 60.108 55.000 31.54 14.98 0.00 2.73
244 245 1.291132 GAAAGACTGAGCCGGCATAC 58.709 55.000 31.54 19.58 0.00 2.39
245 246 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
246 247 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
247 248 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
248 249 1.355066 CTTCGAAAGACTGAGCCGGC 61.355 60.000 21.89 21.89 41.84 6.13
249 250 0.737715 CCTTCGAAAGACTGAGCCGG 60.738 60.000 0.00 0.00 41.84 6.13
250 251 0.737715 CCCTTCGAAAGACTGAGCCG 60.738 60.000 0.00 0.00 41.84 5.52
251 252 0.321996 ACCCTTCGAAAGACTGAGCC 59.678 55.000 0.00 0.00 41.84 4.70
252 253 1.270358 ACACCCTTCGAAAGACTGAGC 60.270 52.381 0.00 0.00 41.84 4.26
253 254 2.408050 CACACCCTTCGAAAGACTGAG 58.592 52.381 0.00 0.00 41.84 3.35
254 255 1.540363 GCACACCCTTCGAAAGACTGA 60.540 52.381 0.00 0.00 41.84 3.41
255 256 0.868406 GCACACCCTTCGAAAGACTG 59.132 55.000 0.00 0.00 41.84 3.51
256 257 0.600255 CGCACACCCTTCGAAAGACT 60.600 55.000 0.00 0.00 41.84 3.24
257 258 0.878961 ACGCACACCCTTCGAAAGAC 60.879 55.000 0.00 0.00 41.84 3.01
258 259 0.878523 CACGCACACCCTTCGAAAGA 60.879 55.000 0.00 0.00 39.20 2.52
259 260 1.157870 ACACGCACACCCTTCGAAAG 61.158 55.000 0.00 0.00 0.00 2.62
260 261 1.153329 ACACGCACACCCTTCGAAA 60.153 52.632 0.00 0.00 0.00 3.46
261 262 1.885388 CACACGCACACCCTTCGAA 60.885 57.895 0.00 0.00 0.00 3.71
262 263 2.279851 CACACGCACACCCTTCGA 60.280 61.111 0.00 0.00 0.00 3.71
263 264 4.012895 GCACACGCACACCCTTCG 62.013 66.667 0.00 0.00 38.36 3.79
264 265 4.012895 CGCACACGCACACCCTTC 62.013 66.667 0.00 0.00 38.40 3.46
265 266 4.849310 ACGCACACGCACACCCTT 62.849 61.111 0.00 0.00 45.53 3.95
266 267 4.849310 AACGCACACGCACACCCT 62.849 61.111 0.00 0.00 45.53 4.34
267 268 4.307908 GAACGCACACGCACACCC 62.308 66.667 0.00 0.00 45.53 4.61
268 269 1.561717 TATGAACGCACACGCACACC 61.562 55.000 0.00 0.00 45.53 4.16
269 270 0.179250 CTATGAACGCACACGCACAC 60.179 55.000 0.00 0.00 45.53 3.82
270 271 1.288419 CCTATGAACGCACACGCACA 61.288 55.000 0.00 0.00 45.53 4.57
271 272 1.419922 CCTATGAACGCACACGCAC 59.580 57.895 0.00 0.00 45.53 5.34
272 273 1.739929 CCCTATGAACGCACACGCA 60.740 57.895 0.00 0.00 45.53 5.24
273 274 2.461110 CCCCTATGAACGCACACGC 61.461 63.158 0.00 0.00 45.53 5.34
275 276 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
276 277 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
277 278 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
278 279 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
279 280 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
280 281 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
281 282 3.118408 TGCATACACTCACCCCTATGAAC 60.118 47.826 0.00 0.00 0.00 3.18
282 283 3.111484 TGCATACACTCACCCCTATGAA 58.889 45.455 0.00 0.00 0.00 2.57
283 284 2.434336 GTGCATACACTCACCCCTATGA 59.566 50.000 0.00 0.00 43.85 2.15
284 285 2.803133 CGTGCATACACTCACCCCTATG 60.803 54.545 0.00 0.00 45.10 2.23
285 286 1.412710 CGTGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 45.10 2.57
286 287 0.821517 CGTGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 45.10 3.53
287 288 1.192146 ACGTGCATACACTCACCCCT 61.192 55.000 0.00 0.00 45.10 4.79
288 289 1.019278 CACGTGCATACACTCACCCC 61.019 60.000 0.82 0.00 45.10 4.95
289 290 0.320421 ACACGTGCATACACTCACCC 60.320 55.000 17.22 0.00 45.10 4.61
290 291 2.357327 TACACGTGCATACACTCACC 57.643 50.000 17.22 0.00 45.10 4.02
291 292 5.278604 TCATATACACGTGCATACACTCAC 58.721 41.667 17.22 0.00 45.10 3.51
292 293 5.508200 TCATATACACGTGCATACACTCA 57.492 39.130 17.22 0.00 45.10 3.41
293 294 4.383052 GCTCATATACACGTGCATACACTC 59.617 45.833 17.22 0.27 45.10 3.51
294 295 4.299155 GCTCATATACACGTGCATACACT 58.701 43.478 17.22 0.00 45.10 3.55
295 296 3.119628 CGCTCATATACACGTGCATACAC 59.880 47.826 17.22 2.67 43.76 2.90
296 297 3.305110 CGCTCATATACACGTGCATACA 58.695 45.455 17.22 2.39 0.00 2.29
297 298 2.090658 GCGCTCATATACACGTGCATAC 59.909 50.000 17.22 0.00 33.41 2.39
298 299 2.030274 AGCGCTCATATACACGTGCATA 60.030 45.455 17.22 13.68 35.49 3.14
299 300 1.139989 GCGCTCATATACACGTGCAT 58.860 50.000 17.22 11.52 33.41 3.96
300 301 0.102300 AGCGCTCATATACACGTGCA 59.898 50.000 17.22 2.06 35.49 4.57
301 302 1.071239 CAAGCGCTCATATACACGTGC 60.071 52.381 17.22 0.00 0.00 5.34
302 303 1.071239 GCAAGCGCTCATATACACGTG 60.071 52.381 12.06 15.48 34.30 4.49
303 304 1.209128 GCAAGCGCTCATATACACGT 58.791 50.000 12.06 0.00 34.30 4.49
304 305 0.159554 CGCAAGCGCTCATATACACG 59.840 55.000 12.06 2.00 35.30 4.49
305 306 1.190323 GACGCAAGCGCTCATATACAC 59.810 52.381 12.06 0.00 44.19 2.90
306 307 1.067060 AGACGCAAGCGCTCATATACA 59.933 47.619 12.06 0.00 44.19 2.29
307 308 1.772182 AGACGCAAGCGCTCATATAC 58.228 50.000 12.06 1.00 44.19 1.47
308 309 3.850122 ATAGACGCAAGCGCTCATATA 57.150 42.857 12.06 0.00 44.19 0.86
309 310 2.732412 ATAGACGCAAGCGCTCATAT 57.268 45.000 12.06 0.00 44.19 1.78
310 311 2.552743 AGTATAGACGCAAGCGCTCATA 59.447 45.455 12.06 6.40 44.19 2.15
311 312 1.338337 AGTATAGACGCAAGCGCTCAT 59.662 47.619 12.06 7.35 44.19 2.90
312 313 0.738975 AGTATAGACGCAAGCGCTCA 59.261 50.000 12.06 0.00 44.19 4.26
313 314 1.124462 CAGTATAGACGCAAGCGCTC 58.876 55.000 12.06 11.06 44.19 5.03
314 315 0.456221 ACAGTATAGACGCAAGCGCT 59.544 50.000 15.09 2.64 44.19 5.92
315 316 2.115348 TACAGTATAGACGCAAGCGC 57.885 50.000 15.09 0.00 44.19 5.92
316 317 6.742999 TTTAATACAGTATAGACGCAAGCG 57.257 37.500 13.50 13.50 46.03 4.68
339 340 7.203910 AGAAGAGTACGAGCGATATCATTTTT 58.796 34.615 3.12 0.00 0.00 1.94
340 341 6.740110 AGAAGAGTACGAGCGATATCATTTT 58.260 36.000 3.12 0.00 0.00 1.82
431 434 2.372040 TAGGTGTGTGGCGGTGTGAC 62.372 60.000 0.00 0.00 0.00 3.67
449 452 1.276989 CAGAAGGGCGTGGGTTTAGTA 59.723 52.381 0.00 0.00 0.00 1.82
450 453 0.036306 CAGAAGGGCGTGGGTTTAGT 59.964 55.000 0.00 0.00 0.00 2.24
451 454 1.305930 GCAGAAGGGCGTGGGTTTAG 61.306 60.000 0.00 0.00 0.00 1.85
452 455 1.302993 GCAGAAGGGCGTGGGTTTA 60.303 57.895 0.00 0.00 0.00 2.01
453 456 2.597510 GCAGAAGGGCGTGGGTTT 60.598 61.111 0.00 0.00 0.00 3.27
454 457 4.660938 GGCAGAAGGGCGTGGGTT 62.661 66.667 0.00 0.00 33.57 4.11
461 464 1.821332 CGAATGGAGGCAGAAGGGC 60.821 63.158 0.00 0.00 43.80 5.19
474 477 5.784750 AGTATGATGTTGTGTGACGAATG 57.215 39.130 0.00 0.00 0.00 2.67
486 489 8.439971 TGGCCATATAGAAGAAAGTATGATGTT 58.560 33.333 0.00 0.00 0.00 2.71
490 493 7.526192 GCTCTGGCCATATAGAAGAAAGTATGA 60.526 40.741 5.51 0.00 0.00 2.15
514 517 3.596101 AGGTGATCATAGGAAGGATGCT 58.404 45.455 0.00 0.00 0.00 3.79
515 518 4.619394 CGTAGGTGATCATAGGAAGGATGC 60.619 50.000 0.00 0.00 0.00 3.91
521 524 2.292569 GACGCGTAGGTGATCATAGGAA 59.707 50.000 13.97 0.00 0.00 3.36
522 525 1.878088 GACGCGTAGGTGATCATAGGA 59.122 52.381 13.97 0.00 0.00 2.94
537 540 2.812591 AGTATAGACACCCATAGACGCG 59.187 50.000 3.53 3.53 0.00 6.01
544 547 5.789535 AGTTAGGGAAGTATAGACACCCAT 58.210 41.667 19.76 7.74 42.98 4.00
560 563 3.684788 GCGATATGGCATACAAGTTAGGG 59.315 47.826 9.83 0.00 0.00 3.53
577 587 0.673985 AGCGAGCTTATGTGGCGATA 59.326 50.000 0.00 0.00 34.52 2.92
581 591 0.389391 TAGGAGCGAGCTTATGTGGC 59.611 55.000 0.00 0.00 0.00 5.01
609 619 1.721133 GAGAAAAACACACCGCGCG 60.721 57.895 25.67 25.67 0.00 6.86
610 620 1.721133 CGAGAAAAACACACCGCGC 60.721 57.895 0.00 0.00 0.00 6.86
632 642 2.338500 CGAGAGTGGAGGTAAAAGCAC 58.662 52.381 0.00 0.00 0.00 4.40
639 678 1.544691 GACTTTGCGAGAGTGGAGGTA 59.455 52.381 0.00 0.00 0.00 3.08
641 680 0.318441 TGACTTTGCGAGAGTGGAGG 59.682 55.000 0.00 0.00 0.00 4.30
647 686 2.092838 GGAAACGATGACTTTGCGAGAG 59.907 50.000 0.00 0.00 0.00 3.20
683 728 6.379386 CAAGTAAGGAAAGGAATTTTCGTCC 58.621 40.000 0.00 0.00 45.00 4.79
705 750 2.045438 CGCTGGGGTGTATGGCAA 60.045 61.111 0.00 0.00 0.00 4.52
716 761 0.249238 GCAGATCTGTAGTCGCTGGG 60.249 60.000 23.38 0.00 0.00 4.45
717 762 0.457443 TGCAGATCTGTAGTCGCTGG 59.543 55.000 23.38 0.00 0.00 4.85
734 779 4.356442 ATTTTGTGCGGCCGGTGC 62.356 61.111 29.38 11.21 0.00 5.01
847 892 3.316573 GAGACTGGTGGAAGCCGGG 62.317 68.421 2.18 0.00 39.19 5.73
960 1479 0.391130 TCATAAGTCACGGCAGGTGC 60.391 55.000 2.49 0.00 46.56 5.01
962 1481 1.204941 GAGTCATAAGTCACGGCAGGT 59.795 52.381 0.00 0.00 0.00 4.00
964 1483 1.550065 CGAGTCATAAGTCACGGCAG 58.450 55.000 0.00 0.00 0.00 4.85
965 1484 0.457853 GCGAGTCATAAGTCACGGCA 60.458 55.000 0.00 0.00 0.00 5.69
988 1510 1.929806 TACGACATCGCTGACCGCTT 61.930 55.000 0.14 0.00 44.43 4.68
994 1516 1.132453 CTCCAAGTACGACATCGCTGA 59.868 52.381 0.14 0.00 44.43 4.26
996 1518 0.456221 CCTCCAAGTACGACATCGCT 59.544 55.000 0.14 0.00 44.43 4.93
1007 1532 1.982395 TCCGTCGCATCCTCCAAGT 60.982 57.895 0.00 0.00 0.00 3.16
1008 1533 1.519455 GTCCGTCGCATCCTCCAAG 60.519 63.158 0.00 0.00 0.00 3.61
1009 1534 1.945354 GAGTCCGTCGCATCCTCCAA 61.945 60.000 0.00 0.00 0.00 3.53
1010 1535 2.362503 AGTCCGTCGCATCCTCCA 60.363 61.111 0.00 0.00 0.00 3.86
1011 1536 2.413765 GAGTCCGTCGCATCCTCC 59.586 66.667 0.00 0.00 0.00 4.30
1012 1537 2.024871 CGAGTCCGTCGCATCCTC 59.975 66.667 0.00 0.00 43.03 3.71
1021 1555 1.524165 CCTCCGATCTCGAGTCCGT 60.524 63.158 13.13 0.00 43.02 4.69
1026 1560 1.804151 GTCTCATCCTCCGATCTCGAG 59.196 57.143 5.93 5.93 43.02 4.04
1030 1564 0.474614 TCCGTCTCATCCTCCGATCT 59.525 55.000 0.00 0.00 0.00 2.75
1045 1579 1.454111 CCTCCGATCCAGAGTCCGT 60.454 63.158 6.65 0.00 0.00 4.69
1046 1580 0.538516 ATCCTCCGATCCAGAGTCCG 60.539 60.000 6.65 0.00 0.00 4.79
1047 1581 0.965439 CATCCTCCGATCCAGAGTCC 59.035 60.000 6.65 0.00 0.00 3.85
1051 1585 0.182775 TCGTCATCCTCCGATCCAGA 59.817 55.000 0.00 0.00 0.00 3.86
1052 1586 0.595588 CTCGTCATCCTCCGATCCAG 59.404 60.000 0.00 0.00 31.90 3.86
1053 1587 0.182775 TCTCGTCATCCTCCGATCCA 59.817 55.000 0.00 0.00 31.90 3.41
1055 1589 2.096819 GCTATCTCGTCATCCTCCGATC 59.903 54.545 0.00 0.00 31.90 3.69
1056 1590 2.088423 GCTATCTCGTCATCCTCCGAT 58.912 52.381 0.00 0.00 31.90 4.18
1057 1591 1.072489 AGCTATCTCGTCATCCTCCGA 59.928 52.381 0.00 0.00 0.00 4.55
1058 1592 1.466950 GAGCTATCTCGTCATCCTCCG 59.533 57.143 0.00 0.00 0.00 4.63
1059 1593 2.509569 TGAGCTATCTCGTCATCCTCC 58.490 52.381 0.00 0.00 42.26 4.30
1060 1594 3.316588 TGTTGAGCTATCTCGTCATCCTC 59.683 47.826 0.00 0.00 42.26 3.71
1061 1595 3.291584 TGTTGAGCTATCTCGTCATCCT 58.708 45.455 0.00 0.00 42.26 3.24
1062 1596 3.551863 CCTGTTGAGCTATCTCGTCATCC 60.552 52.174 0.00 0.00 42.26 3.51
1175 1709 2.126580 GGAACTCCACGACGTCGG 60.127 66.667 37.89 26.50 44.95 4.79
1381 1915 2.594592 GCCGTTGTTGAGGTGCCT 60.595 61.111 0.00 0.00 0.00 4.75
1382 1916 3.670377 GGCCGTTGTTGAGGTGCC 61.670 66.667 0.00 0.00 0.00 5.01
1446 1986 4.778143 GTGGATGTTCCCGCGGCT 62.778 66.667 22.85 0.05 35.03 5.52
1559 2101 1.284297 GCCAAATTGTGCGAACTGCC 61.284 55.000 0.00 0.00 45.60 4.85
1595 2140 1.600916 ACGGTTTTCTCCTGCAGCC 60.601 57.895 8.66 0.67 0.00 4.85
1644 2189 5.124645 TCCTAGTTAAAAACCGAAGCACAA 58.875 37.500 0.00 0.00 0.00 3.33
1645 2190 4.706035 TCCTAGTTAAAAACCGAAGCACA 58.294 39.130 0.00 0.00 0.00 4.57
1658 2203 5.763204 CCAGCAGTTCAAAACTCCTAGTTAA 59.237 40.000 0.00 0.00 40.46 2.01
1718 2263 2.036475 CAGTATCCTCAGCGCCTACATT 59.964 50.000 2.29 0.00 0.00 2.71
1719 2264 1.615883 CAGTATCCTCAGCGCCTACAT 59.384 52.381 2.29 0.00 0.00 2.29
1739 2286 1.377856 GGACTTGAGGGAAGCAGCC 60.378 63.158 0.00 0.00 34.68 4.85
1772 2319 3.428725 CCTGACTCTTGAGGAAGACATCG 60.429 52.174 2.55 0.00 34.36 3.84
1793 2340 1.168714 GTGGACAATGGCTTCACTCC 58.831 55.000 0.00 0.00 0.00 3.85
1895 2442 3.483196 CGCACAAGAAAAATATGCCATCG 59.517 43.478 0.00 0.00 32.55 3.84
1944 2491 3.341823 ACAACAAAAGCAACATTGGCAA 58.658 36.364 0.68 0.68 0.00 4.52
1962 2510 3.399330 GAGACAATCAACCGAGGAACAA 58.601 45.455 0.00 0.00 0.00 2.83
1966 2514 1.541379 TCGAGACAATCAACCGAGGA 58.459 50.000 0.00 0.00 0.00 3.71
1967 2515 2.159240 TCATCGAGACAATCAACCGAGG 60.159 50.000 0.00 0.00 32.60 4.63
1981 2529 5.874810 TCAATTCTAAAACCCACTCATCGAG 59.125 40.000 0.00 0.00 35.52 4.04
2104 2654 3.700038 GGTCCTACACTGCTACTATGTGT 59.300 47.826 0.00 0.00 45.39 3.72
2109 4232 4.079958 TCATGAGGTCCTACACTGCTACTA 60.080 45.833 0.00 0.00 0.00 1.82
2110 4233 2.901338 TGAGGTCCTACACTGCTACT 57.099 50.000 0.00 0.00 0.00 2.57
2118 4241 5.030147 AGTACCATTTCATGAGGTCCTACA 58.970 41.667 8.32 0.00 36.87 2.74
2175 5347 0.108329 ACCGACATTAGAACCGCCAG 60.108 55.000 0.00 0.00 0.00 4.85
2235 5412 3.260632 GCATCACCCAGGTTATTTTGGTT 59.739 43.478 0.00 0.00 32.40 3.67
2262 5439 4.992319 CCATTCACGTCAAGTAAGTGGTAA 59.008 41.667 0.00 0.00 38.05 2.85
2327 5504 1.541588 GGTTGCCTTTCTTCTTGCGAT 59.458 47.619 0.00 0.00 0.00 4.58
2359 5536 2.428171 ACAATAACATGGATGCAGCACC 59.572 45.455 3.51 1.72 0.00 5.01
2369 5546 8.706492 ACAAAATGCTTGATACAATAACATGG 57.294 30.769 0.00 0.00 0.00 3.66
2422 5601 0.248825 TTGGCACGTTTGTCATGCAC 60.249 50.000 0.00 0.00 37.14 4.57
2474 5661 2.049767 CCCGGCATTACCACCCAAC 61.050 63.158 0.00 0.00 39.03 3.77
2537 5726 6.660521 TCATCTAAGCATGAAAACTCCATGTT 59.339 34.615 0.00 0.00 42.39 2.71
2604 5793 6.476378 TGCTAGCAAAGGTTCTAATTCTTCT 58.524 36.000 16.84 0.00 0.00 2.85
2732 5922 8.319057 TCTTTGGTCTAGATGGAGCTAATTAA 57.681 34.615 0.00 0.00 35.11 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.