Multiple sequence alignment - TraesCS3B01G104100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G104100 chr3B 100.000 2204 0 0 1 2204 70577389 70579592 0.000000e+00 4071.0
1 TraesCS3B01G104100 chr3B 89.140 221 24 0 996 1216 70470483 70470703 2.160000e-70 276.0
2 TraesCS3B01G104100 chr3B 79.688 256 29 14 544 785 70428699 70428945 1.750000e-36 163.0
3 TraesCS3B01G104100 chr3D 90.561 1409 80 23 3 1394 45051323 45052695 0.000000e+00 1816.0
4 TraesCS3B01G104100 chr3D 78.622 711 96 36 544 1218 45044805 45045495 9.410000e-114 420.0
5 TraesCS3B01G104100 chr3D 93.038 158 8 3 1436 1592 45052690 45052845 6.120000e-56 228.0
6 TraesCS3B01G104100 chr3D 92.547 161 8 3 2045 2202 45052845 45053004 6.120000e-56 228.0
7 TraesCS3B01G104100 chr3A 88.824 1199 83 20 40 1225 57006851 57008011 0.000000e+00 1424.0
8 TraesCS3B01G104100 chr3A 90.757 779 53 7 449 1225 56948097 56948858 0.000000e+00 1022.0
9 TraesCS3B01G104100 chr3A 77.500 720 93 44 544 1218 56858213 56858908 3.460000e-98 368.0
10 TraesCS3B01G104100 chr3A 80.000 430 56 19 814 1218 56776015 56776439 7.700000e-75 291.0
11 TraesCS3B01G104100 chr3A 90.179 224 14 6 372 595 57006641 57006856 3.580000e-73 285.0
12 TraesCS3B01G104100 chr3A 89.238 223 24 0 996 1218 56778937 56779159 1.670000e-71 279.0
13 TraesCS3B01G104100 chr3A 87.083 240 30 1 979 1218 56850902 56851140 1.000000e-68 270.0
14 TraesCS3B01G104100 chr3A 94.737 133 7 0 437 569 56808836 56808968 7.980000e-50 207.0
15 TraesCS3B01G104100 chr4B 83.871 93 15 0 121 213 113198547 113198455 3.010000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G104100 chr3B 70577389 70579592 2203 False 4071.000000 4071 100.000000 1 2204 1 chr3B.!!$F3 2203
1 TraesCS3B01G104100 chr3D 45051323 45053004 1681 False 757.333333 1816 92.048667 3 2202 3 chr3D.!!$F2 2199
2 TraesCS3B01G104100 chr3D 45044805 45045495 690 False 420.000000 420 78.622000 544 1218 1 chr3D.!!$F1 674
3 TraesCS3B01G104100 chr3A 56948097 56948858 761 False 1022.000000 1022 90.757000 449 1225 1 chr3A.!!$F4 776
4 TraesCS3B01G104100 chr3A 57006641 57008011 1370 False 854.500000 1424 89.501500 40 1225 2 chr3A.!!$F6 1185
5 TraesCS3B01G104100 chr3A 56858213 56858908 695 False 368.000000 368 77.500000 544 1218 1 chr3A.!!$F3 674
6 TraesCS3B01G104100 chr3A 56776015 56779159 3144 False 285.000000 291 84.619000 814 1218 2 chr3A.!!$F5 404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 395 0.097325 GCAACCAAACACACGTTCGA 59.903 50.0 0.0 0.0 32.91 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 4901 0.031043 AGTGTGTGCGTAACTGCGTA 59.969 50.0 0.0 0.0 37.81 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 303 3.362986 CGTGTCAAATTTCACCACTCGAG 60.363 47.826 11.84 11.84 0.00 4.04
155 327 5.278463 GCAAGAGGTTATCACAACACATGTT 60.278 40.000 0.00 0.00 41.46 2.71
158 330 6.738114 AGAGGTTATCACAACACATGTTTTG 58.262 36.000 20.48 20.48 41.46 2.44
190 362 1.067516 ACAACACCACTTTGCATCTGC 59.932 47.619 0.00 0.00 42.50 4.26
216 388 1.519719 GGGCTTGCAACCAAACACA 59.480 52.632 16.55 0.00 0.00 3.72
223 395 0.097325 GCAACCAAACACACGTTCGA 59.903 50.000 0.00 0.00 32.91 3.71
247 419 7.346751 AGTGTTTTTGTTCATTCATACTGGT 57.653 32.000 0.00 0.00 0.00 4.00
265 437 2.964464 TGGTGAATGCAGACAACCAAAT 59.036 40.909 10.04 0.00 0.00 2.32
272 444 6.150307 TGAATGCAGACAACCAAATTACGTAT 59.850 34.615 0.00 0.00 0.00 3.06
274 446 4.155099 TGCAGACAACCAAATTACGTATGG 59.845 41.667 11.36 11.36 40.16 2.74
313 485 0.842030 ATCCACTCTGTCAGGCCCAA 60.842 55.000 0.00 0.00 0.00 4.12
317 489 0.109342 ACTCTGTCAGGCCCAACAAG 59.891 55.000 0.00 7.33 0.00 3.16
341 513 3.320129 AGTAGTGGTAGTTTGGTTGGGA 58.680 45.455 0.00 0.00 0.00 4.37
392 564 9.508567 GATTTCTTTAAATGAAAATCGGAGAGG 57.491 33.333 13.27 0.00 36.01 3.69
393 565 7.391148 TTCTTTAAATGAAAATCGGAGAGGG 57.609 36.000 0.00 0.00 43.63 4.30
394 566 5.885912 TCTTTAAATGAAAATCGGAGAGGGG 59.114 40.000 0.00 0.00 43.63 4.79
412 584 1.611965 GGGGAGGCTCTCATTTGCT 59.388 57.895 17.73 0.00 31.08 3.91
413 585 0.839946 GGGGAGGCTCTCATTTGCTA 59.160 55.000 17.73 0.00 31.08 3.49
414 586 1.212935 GGGGAGGCTCTCATTTGCTAA 59.787 52.381 17.73 0.00 31.08 3.09
415 587 2.357154 GGGGAGGCTCTCATTTGCTAAA 60.357 50.000 17.73 0.00 31.08 1.85
418 590 4.142293 GGGAGGCTCTCATTTGCTAAAAAG 60.142 45.833 15.23 0.00 31.08 2.27
464 636 3.057736 CACAGATGCAAGGAGGACAAAAG 60.058 47.826 0.00 0.00 0.00 2.27
517 689 6.017400 AGTTTGATGTACCAAAAGCATCAG 57.983 37.500 6.56 0.00 46.20 2.90
531 703 5.966742 AAGCATCAGACTCCCTTTTAAAC 57.033 39.130 0.00 0.00 0.00 2.01
569 741 7.439056 ACCAAAAGCTAGAAAACATTTCATGTG 59.561 33.333 0.00 0.00 44.07 3.21
579 751 5.743636 AACATTTCATGTGCCAAATACCT 57.256 34.783 0.00 0.00 44.07 3.08
606 778 2.090719 TGGTTGGCTAGGCTAGGATAGT 60.091 50.000 22.40 0.00 41.93 2.12
719 894 2.668625 GGGGTGACAAAACCAAGGTTA 58.331 47.619 4.68 0.00 42.47 2.85
720 895 3.236047 GGGGTGACAAAACCAAGGTTAT 58.764 45.455 4.68 0.00 42.47 1.89
839 3913 2.733671 CGCATCCAGCAGTCGTGTG 61.734 63.158 0.00 0.00 46.13 3.82
888 3970 1.918293 TCCACGCATCCCCTCTTGT 60.918 57.895 0.00 0.00 0.00 3.16
905 4024 4.560128 TCTTGTGATCTTTGTTCTCCTCG 58.440 43.478 0.00 0.00 0.00 4.63
906 4025 2.688507 TGTGATCTTTGTTCTCCTCGC 58.311 47.619 0.00 0.00 0.00 5.03
907 4026 2.037121 TGTGATCTTTGTTCTCCTCGCA 59.963 45.455 0.00 0.00 0.00 5.10
908 4027 3.265791 GTGATCTTTGTTCTCCTCGCAT 58.734 45.455 0.00 0.00 0.00 4.73
909 4028 4.081697 TGTGATCTTTGTTCTCCTCGCATA 60.082 41.667 0.00 0.00 0.00 3.14
910 4029 5.053145 GTGATCTTTGTTCTCCTCGCATAT 58.947 41.667 0.00 0.00 0.00 1.78
911 4030 5.525378 GTGATCTTTGTTCTCCTCGCATATT 59.475 40.000 0.00 0.00 0.00 1.28
912 4031 6.037610 GTGATCTTTGTTCTCCTCGCATATTT 59.962 38.462 0.00 0.00 0.00 1.40
913 4032 6.258727 TGATCTTTGTTCTCCTCGCATATTTC 59.741 38.462 0.00 0.00 0.00 2.17
914 4033 5.734720 TCTTTGTTCTCCTCGCATATTTCT 58.265 37.500 0.00 0.00 0.00 2.52
915 4034 6.873997 TCTTTGTTCTCCTCGCATATTTCTA 58.126 36.000 0.00 0.00 0.00 2.10
916 4035 7.500992 TCTTTGTTCTCCTCGCATATTTCTAT 58.499 34.615 0.00 0.00 0.00 1.98
917 4036 7.987458 TCTTTGTTCTCCTCGCATATTTCTATT 59.013 33.333 0.00 0.00 0.00 1.73
918 4037 8.506168 TTTGTTCTCCTCGCATATTTCTATTT 57.494 30.769 0.00 0.00 0.00 1.40
924 4043 7.011389 TCTCCTCGCATATTTCTATTTTGTGTG 59.989 37.037 0.00 0.00 0.00 3.82
1006 4154 1.480137 AGGAGGAACAGAAGATGAGCG 59.520 52.381 0.00 0.00 0.00 5.03
1263 4411 2.417586 GCCGGGTGTGTACTTTATGAAC 59.582 50.000 2.18 0.00 0.00 3.18
1272 4420 2.693267 ACTTTATGAACGGGAGCTCC 57.307 50.000 25.59 25.59 0.00 4.70
1344 4492 7.384439 TGCCTCGATGTAATGTTTTGAATTA 57.616 32.000 0.00 0.00 0.00 1.40
1346 4494 8.465999 TGCCTCGATGTAATGTTTTGAATTAAT 58.534 29.630 0.00 0.00 0.00 1.40
1347 4495 9.944663 GCCTCGATGTAATGTTTTGAATTAATA 57.055 29.630 0.00 0.00 0.00 0.98
1391 4546 4.841422 AGAAATGAGTGGAGACCTTCATG 58.159 43.478 0.00 0.00 32.19 3.07
1392 4547 2.706339 ATGAGTGGAGACCTTCATGC 57.294 50.000 0.00 0.00 31.23 4.06
1393 4548 1.649321 TGAGTGGAGACCTTCATGCT 58.351 50.000 0.00 0.00 0.00 3.79
1394 4549 2.820178 TGAGTGGAGACCTTCATGCTA 58.180 47.619 0.00 0.00 0.00 3.49
1395 4550 2.762887 TGAGTGGAGACCTTCATGCTAG 59.237 50.000 0.00 0.00 0.00 3.42
1396 4551 2.102252 GAGTGGAGACCTTCATGCTAGG 59.898 54.545 11.02 11.02 38.79 3.02
1397 4552 2.111384 GTGGAGACCTTCATGCTAGGA 58.889 52.381 17.53 0.00 36.58 2.94
1398 4553 2.102252 GTGGAGACCTTCATGCTAGGAG 59.898 54.545 17.53 0.00 36.58 3.69
1399 4554 2.292521 TGGAGACCTTCATGCTAGGAGT 60.293 50.000 17.53 6.52 36.58 3.85
1400 4555 2.769095 GGAGACCTTCATGCTAGGAGTT 59.231 50.000 17.53 5.36 36.58 3.01
1401 4556 3.198853 GGAGACCTTCATGCTAGGAGTTT 59.801 47.826 17.53 0.00 36.58 2.66
1402 4557 4.323868 GGAGACCTTCATGCTAGGAGTTTT 60.324 45.833 17.53 0.00 36.58 2.43
1403 4558 5.248380 AGACCTTCATGCTAGGAGTTTTT 57.752 39.130 17.53 0.00 36.58 1.94
1430 4585 6.764308 TTTTTGAGGAATTCATGCTAGGAG 57.236 37.500 7.93 0.00 35.27 3.69
1431 4586 3.482156 TGAGGAATTCATGCTAGGAGC 57.518 47.619 7.93 0.00 42.82 4.70
1432 4587 3.044156 TGAGGAATTCATGCTAGGAGCT 58.956 45.455 7.93 0.00 42.97 4.09
1433 4588 3.181457 TGAGGAATTCATGCTAGGAGCTG 60.181 47.826 7.93 0.00 42.97 4.24
1434 4589 3.044156 AGGAATTCATGCTAGGAGCTGA 58.956 45.455 7.93 0.00 42.97 4.26
1435 4590 3.137533 GGAATTCATGCTAGGAGCTGAC 58.862 50.000 7.93 0.00 42.97 3.51
1436 4591 3.432749 GGAATTCATGCTAGGAGCTGACA 60.433 47.826 7.93 0.00 42.97 3.58
1437 4592 4.387598 GAATTCATGCTAGGAGCTGACAT 58.612 43.478 0.00 0.00 42.97 3.06
1438 4593 5.512060 GGAATTCATGCTAGGAGCTGACATA 60.512 44.000 7.93 0.00 42.97 2.29
1501 4656 4.691685 TGGTAGTGCAACATAGTTTTACCG 59.308 41.667 0.00 0.00 41.43 4.02
1509 4664 7.254218 GTGCAACATAGTTTTACCGTATAGGTC 60.254 40.741 0.00 0.00 44.40 3.85
1531 4686 3.891366 CCATACAGGTGAATCCAATTCCC 59.109 47.826 0.00 0.00 38.50 3.97
1575 4730 7.408756 TGGCTTCATGCTTAATTACTTTGAT 57.591 32.000 0.00 0.00 42.39 2.57
1577 4732 8.623903 TGGCTTCATGCTTAATTACTTTGATAG 58.376 33.333 0.00 0.00 42.39 2.08
1578 4733 8.840321 GGCTTCATGCTTAATTACTTTGATAGA 58.160 33.333 0.00 0.00 42.39 1.98
1593 4748 8.353423 ACTTTGATAGAAAATATGCAGGTTGT 57.647 30.769 0.00 0.00 0.00 3.32
1594 4749 8.246180 ACTTTGATAGAAAATATGCAGGTTGTG 58.754 33.333 0.00 0.00 0.00 3.33
1595 4750 7.701539 TTGATAGAAAATATGCAGGTTGTGT 57.298 32.000 0.00 0.00 0.00 3.72
1596 4751 7.701539 TGATAGAAAATATGCAGGTTGTGTT 57.298 32.000 0.00 0.00 0.00 3.32
1597 4752 7.761409 TGATAGAAAATATGCAGGTTGTGTTC 58.239 34.615 0.00 0.00 0.00 3.18
1598 4753 7.392953 TGATAGAAAATATGCAGGTTGTGTTCA 59.607 33.333 0.00 0.00 0.00 3.18
1599 4754 6.403866 AGAAAATATGCAGGTTGTGTTCAA 57.596 33.333 0.00 0.00 0.00 2.69
1600 4755 6.815089 AGAAAATATGCAGGTTGTGTTCAAA 58.185 32.000 0.00 0.00 35.20 2.69
1601 4756 7.271511 AGAAAATATGCAGGTTGTGTTCAAAA 58.728 30.769 0.00 0.00 35.20 2.44
1602 4757 7.768120 AGAAAATATGCAGGTTGTGTTCAAAAA 59.232 29.630 0.00 0.00 35.20 1.94
1603 4758 7.481275 AAATATGCAGGTTGTGTTCAAAAAG 57.519 32.000 0.00 0.00 35.20 2.27
1604 4759 4.734398 ATGCAGGTTGTGTTCAAAAAGA 57.266 36.364 0.00 0.00 35.20 2.52
1605 4760 4.527509 TGCAGGTTGTGTTCAAAAAGAA 57.472 36.364 0.00 0.00 35.20 2.52
1606 4761 4.887748 TGCAGGTTGTGTTCAAAAAGAAA 58.112 34.783 0.00 0.00 38.13 2.52
1607 4762 5.300752 TGCAGGTTGTGTTCAAAAAGAAAA 58.699 33.333 0.00 0.00 38.13 2.29
1608 4763 5.936956 TGCAGGTTGTGTTCAAAAAGAAAAT 59.063 32.000 0.00 0.00 38.13 1.82
1609 4764 6.429385 TGCAGGTTGTGTTCAAAAAGAAAATT 59.571 30.769 0.00 0.00 38.13 1.82
1610 4765 7.604164 TGCAGGTTGTGTTCAAAAAGAAAATTA 59.396 29.630 0.00 0.00 38.13 1.40
1611 4766 8.611757 GCAGGTTGTGTTCAAAAAGAAAATTAT 58.388 29.630 0.00 0.00 38.13 1.28
1612 4767 9.919348 CAGGTTGTGTTCAAAAAGAAAATTATG 57.081 29.630 0.00 0.00 38.13 1.90
1613 4768 8.611757 AGGTTGTGTTCAAAAAGAAAATTATGC 58.388 29.630 0.00 0.00 38.13 3.14
1614 4769 8.394121 GGTTGTGTTCAAAAAGAAAATTATGCA 58.606 29.630 0.00 0.00 38.13 3.96
1615 4770 9.424659 GTTGTGTTCAAAAAGAAAATTATGCAG 57.575 29.630 0.00 0.00 38.13 4.41
1616 4771 8.140677 TGTGTTCAAAAAGAAAATTATGCAGG 57.859 30.769 0.00 0.00 38.13 4.85
1617 4772 7.768120 TGTGTTCAAAAAGAAAATTATGCAGGT 59.232 29.630 0.00 0.00 38.13 4.00
1618 4773 8.611757 GTGTTCAAAAAGAAAATTATGCAGGTT 58.388 29.630 0.00 0.00 38.13 3.50
1619 4774 8.825745 TGTTCAAAAAGAAAATTATGCAGGTTC 58.174 29.630 0.00 0.00 38.13 3.62
1620 4775 8.825745 GTTCAAAAAGAAAATTATGCAGGTTCA 58.174 29.630 0.00 0.00 38.13 3.18
1621 4776 9.558396 TTCAAAAAGAAAATTATGCAGGTTCAT 57.442 25.926 0.00 0.00 32.05 2.57
1622 4777 9.558396 TCAAAAAGAAAATTATGCAGGTTCATT 57.442 25.926 0.00 0.00 0.00 2.57
1623 4778 9.601971 CAAAAAGAAAATTATGCAGGTTCATTG 57.398 29.630 0.00 0.00 0.00 2.82
1624 4779 6.973229 AAGAAAATTATGCAGGTTCATTGC 57.027 33.333 0.00 0.00 41.86 3.56
1631 4786 3.815856 TGCAGGTTCATTGCAGAAAAA 57.184 38.095 0.00 0.00 45.89 1.94
1672 4827 7.483580 TTTTTATTTTGTAGGTATGGGTGGG 57.516 36.000 0.00 0.00 0.00 4.61
1673 4828 3.680777 ATTTTGTAGGTATGGGTGGGG 57.319 47.619 0.00 0.00 0.00 4.96
1674 4829 1.300927 TTTGTAGGTATGGGTGGGGG 58.699 55.000 0.00 0.00 0.00 5.40
1675 4830 0.422313 TTGTAGGTATGGGTGGGGGA 59.578 55.000 0.00 0.00 0.00 4.81
1676 4831 0.422313 TGTAGGTATGGGTGGGGGAA 59.578 55.000 0.00 0.00 0.00 3.97
1677 4832 1.011545 TGTAGGTATGGGTGGGGGAAT 59.988 52.381 0.00 0.00 0.00 3.01
1678 4833 1.423921 GTAGGTATGGGTGGGGGAATG 59.576 57.143 0.00 0.00 0.00 2.67
1679 4834 0.047176 AGGTATGGGTGGGGGAATGA 59.953 55.000 0.00 0.00 0.00 2.57
1680 4835 0.930726 GGTATGGGTGGGGGAATGAA 59.069 55.000 0.00 0.00 0.00 2.57
1681 4836 1.289530 GGTATGGGTGGGGGAATGAAA 59.710 52.381 0.00 0.00 0.00 2.69
1682 4837 2.292587 GGTATGGGTGGGGGAATGAAAA 60.293 50.000 0.00 0.00 0.00 2.29
1683 4838 2.967898 ATGGGTGGGGGAATGAAAAT 57.032 45.000 0.00 0.00 0.00 1.82
1684 4839 1.949799 TGGGTGGGGGAATGAAAATG 58.050 50.000 0.00 0.00 0.00 2.32
1685 4840 1.434773 TGGGTGGGGGAATGAAAATGA 59.565 47.619 0.00 0.00 0.00 2.57
1686 4841 2.045605 TGGGTGGGGGAATGAAAATGAT 59.954 45.455 0.00 0.00 0.00 2.45
1687 4842 3.273351 TGGGTGGGGGAATGAAAATGATA 59.727 43.478 0.00 0.00 0.00 2.15
1688 4843 4.078101 TGGGTGGGGGAATGAAAATGATAT 60.078 41.667 0.00 0.00 0.00 1.63
1689 4844 4.907269 GGGTGGGGGAATGAAAATGATATT 59.093 41.667 0.00 0.00 0.00 1.28
1690 4845 5.221702 GGGTGGGGGAATGAAAATGATATTG 60.222 44.000 0.00 0.00 0.00 1.90
1691 4846 5.366477 GGTGGGGGAATGAAAATGATATTGT 59.634 40.000 0.00 0.00 0.00 2.71
1692 4847 6.462909 GGTGGGGGAATGAAAATGATATTGTC 60.463 42.308 0.00 0.00 0.00 3.18
1693 4848 5.602145 TGGGGGAATGAAAATGATATTGTCC 59.398 40.000 0.00 0.00 0.00 4.02
1694 4849 5.602145 GGGGGAATGAAAATGATATTGTCCA 59.398 40.000 0.00 0.00 0.00 4.02
1695 4850 6.099557 GGGGGAATGAAAATGATATTGTCCAA 59.900 38.462 0.00 0.00 0.00 3.53
1696 4851 7.202121 GGGGGAATGAAAATGATATTGTCCAAT 60.202 37.037 0.00 0.00 34.93 3.16
1697 4852 7.874528 GGGGAATGAAAATGATATTGTCCAATC 59.125 37.037 0.00 0.00 32.50 2.67
1698 4853 8.645110 GGGAATGAAAATGATATTGTCCAATCT 58.355 33.333 0.00 0.00 32.50 2.40
1719 4874 4.403976 TTTTTGCGGGCGTTTGAC 57.596 50.000 0.00 0.00 0.00 3.18
1720 4875 1.511305 TTTTTGCGGGCGTTTGACA 59.489 47.368 0.00 0.00 0.00 3.58
1721 4876 0.103208 TTTTTGCGGGCGTTTGACAT 59.897 45.000 0.00 0.00 0.00 3.06
1722 4877 0.596083 TTTTGCGGGCGTTTGACATG 60.596 50.000 0.00 0.00 0.00 3.21
1723 4878 1.729470 TTTGCGGGCGTTTGACATGT 61.729 50.000 0.00 0.00 0.00 3.21
1724 4879 1.729470 TTGCGGGCGTTTGACATGTT 61.729 50.000 0.00 0.00 0.00 2.71
1725 4880 1.007849 GCGGGCGTTTGACATGTTT 60.008 52.632 0.00 0.00 0.00 2.83
1726 4881 0.238817 GCGGGCGTTTGACATGTTTA 59.761 50.000 0.00 0.00 0.00 2.01
1727 4882 1.727857 GCGGGCGTTTGACATGTTTAG 60.728 52.381 0.00 0.00 0.00 1.85
1728 4883 1.533731 CGGGCGTTTGACATGTTTAGT 59.466 47.619 0.00 0.00 0.00 2.24
1729 4884 2.664424 CGGGCGTTTGACATGTTTAGTG 60.664 50.000 0.00 0.00 0.00 2.74
1730 4885 2.550606 GGGCGTTTGACATGTTTAGTGA 59.449 45.455 0.00 0.00 0.00 3.41
1731 4886 3.551551 GGCGTTTGACATGTTTAGTGAC 58.448 45.455 0.00 0.00 0.00 3.67
1732 4887 3.002862 GGCGTTTGACATGTTTAGTGACA 59.997 43.478 0.00 0.00 0.00 3.58
1733 4888 4.211389 GCGTTTGACATGTTTAGTGACAG 58.789 43.478 0.00 0.00 32.19 3.51
1734 4889 4.211389 CGTTTGACATGTTTAGTGACAGC 58.789 43.478 0.00 0.00 32.19 4.40
1735 4890 4.537015 GTTTGACATGTTTAGTGACAGCC 58.463 43.478 0.00 0.00 32.19 4.85
1736 4891 3.483808 TGACATGTTTAGTGACAGCCA 57.516 42.857 0.00 0.00 32.19 4.75
1737 4892 4.019792 TGACATGTTTAGTGACAGCCAT 57.980 40.909 0.00 0.00 32.19 4.40
1738 4893 4.002982 TGACATGTTTAGTGACAGCCATC 58.997 43.478 0.00 0.00 32.19 3.51
1739 4894 3.347216 ACATGTTTAGTGACAGCCATCC 58.653 45.455 0.00 0.00 32.19 3.51
1740 4895 3.244875 ACATGTTTAGTGACAGCCATCCA 60.245 43.478 0.00 0.00 32.19 3.41
1741 4896 3.057969 TGTTTAGTGACAGCCATCCAG 57.942 47.619 0.00 0.00 0.00 3.86
1742 4897 2.637382 TGTTTAGTGACAGCCATCCAGA 59.363 45.455 0.00 0.00 0.00 3.86
1743 4898 3.265791 GTTTAGTGACAGCCATCCAGAG 58.734 50.000 0.00 0.00 0.00 3.35
1744 4899 0.826715 TAGTGACAGCCATCCAGAGC 59.173 55.000 0.00 0.00 0.00 4.09
1745 4900 1.196766 AGTGACAGCCATCCAGAGCA 61.197 55.000 0.00 0.00 0.00 4.26
1746 4901 0.107312 GTGACAGCCATCCAGAGCAT 60.107 55.000 0.00 0.00 0.00 3.79
1747 4902 1.139654 GTGACAGCCATCCAGAGCATA 59.860 52.381 0.00 0.00 0.00 3.14
1748 4903 1.139654 TGACAGCCATCCAGAGCATAC 59.860 52.381 0.00 0.00 0.00 2.39
1749 4904 0.105593 ACAGCCATCCAGAGCATACG 59.894 55.000 0.00 0.00 0.00 3.06
1750 4905 1.070445 AGCCATCCAGAGCATACGC 59.930 57.895 0.00 0.00 38.99 4.42
1751 4906 1.227645 GCCATCCAGAGCATACGCA 60.228 57.895 0.00 0.00 42.27 5.24
1752 4907 1.226686 GCCATCCAGAGCATACGCAG 61.227 60.000 0.00 0.00 42.27 5.18
1754 4909 1.473965 CCATCCAGAGCATACGCAGTT 60.474 52.381 0.00 0.00 37.78 3.16
1755 4910 2.224042 CCATCCAGAGCATACGCAGTTA 60.224 50.000 0.00 0.00 37.78 2.24
1756 4911 2.579207 TCCAGAGCATACGCAGTTAC 57.421 50.000 0.00 0.00 37.78 2.50
1757 4912 1.200483 CCAGAGCATACGCAGTTACG 58.800 55.000 0.00 0.00 37.78 3.18
1758 4913 0.572590 CAGAGCATACGCAGTTACGC 59.427 55.000 0.00 0.00 37.78 4.42
1759 4914 0.172578 AGAGCATACGCAGTTACGCA 59.827 50.000 0.00 0.00 37.78 5.24
1760 4915 0.297820 GAGCATACGCAGTTACGCAC 59.702 55.000 0.00 0.00 37.78 5.34
1761 4916 0.389296 AGCATACGCAGTTACGCACA 60.389 50.000 0.00 0.00 37.78 4.57
1762 4917 0.247145 GCATACGCAGTTACGCACAC 60.247 55.000 1.04 0.00 37.78 3.82
1763 4918 1.064582 CATACGCAGTTACGCACACA 58.935 50.000 1.04 0.00 37.78 3.72
1764 4919 1.065358 ATACGCAGTTACGCACACAC 58.935 50.000 1.04 0.00 37.78 3.82
1765 4920 0.031043 TACGCAGTTACGCACACACT 59.969 50.000 1.04 0.00 37.78 3.55
1766 4921 0.031043 ACGCAGTTACGCACACACTA 59.969 50.000 1.04 0.00 37.78 2.74
1767 4922 1.133407 CGCAGTTACGCACACACTAA 58.867 50.000 1.04 0.00 0.00 2.24
1768 4923 1.124297 CGCAGTTACGCACACACTAAG 59.876 52.381 1.04 0.00 0.00 2.18
1769 4924 2.400399 GCAGTTACGCACACACTAAGA 58.600 47.619 0.00 0.00 0.00 2.10
1770 4925 2.993899 GCAGTTACGCACACACTAAGAT 59.006 45.455 0.00 0.00 0.00 2.40
1771 4926 3.432252 GCAGTTACGCACACACTAAGATT 59.568 43.478 0.00 0.00 0.00 2.40
1772 4927 4.434330 GCAGTTACGCACACACTAAGATTC 60.434 45.833 0.00 0.00 0.00 2.52
1773 4928 4.684242 CAGTTACGCACACACTAAGATTCA 59.316 41.667 0.00 0.00 0.00 2.57
1774 4929 5.348724 CAGTTACGCACACACTAAGATTCAT 59.651 40.000 0.00 0.00 0.00 2.57
1775 4930 5.932303 AGTTACGCACACACTAAGATTCATT 59.068 36.000 0.00 0.00 0.00 2.57
1776 4931 6.426937 AGTTACGCACACACTAAGATTCATTT 59.573 34.615 0.00 0.00 0.00 2.32
1777 4932 5.283060 ACGCACACACTAAGATTCATTTC 57.717 39.130 0.00 0.00 0.00 2.17
1778 4933 4.154195 ACGCACACACTAAGATTCATTTCC 59.846 41.667 0.00 0.00 0.00 3.13
1779 4934 4.154015 CGCACACACTAAGATTCATTTCCA 59.846 41.667 0.00 0.00 0.00 3.53
1780 4935 5.334802 CGCACACACTAAGATTCATTTCCAA 60.335 40.000 0.00 0.00 0.00 3.53
1781 4936 6.623549 CGCACACACTAAGATTCATTTCCAAT 60.624 38.462 0.00 0.00 0.00 3.16
1782 4937 7.092716 GCACACACTAAGATTCATTTCCAATT 58.907 34.615 0.00 0.00 0.00 2.32
1783 4938 7.599998 GCACACACTAAGATTCATTTCCAATTT 59.400 33.333 0.00 0.00 0.00 1.82
1784 4939 8.918658 CACACACTAAGATTCATTTCCAATTTG 58.081 33.333 0.00 0.00 0.00 2.32
1785 4940 8.641541 ACACACTAAGATTCATTTCCAATTTGT 58.358 29.630 0.00 0.00 0.00 2.83
1786 4941 9.480053 CACACTAAGATTCATTTCCAATTTGTT 57.520 29.630 0.00 0.00 0.00 2.83
1787 4942 9.480053 ACACTAAGATTCATTTCCAATTTGTTG 57.520 29.630 0.00 0.00 0.00 3.33
1788 4943 9.695526 CACTAAGATTCATTTCCAATTTGTTGA 57.304 29.630 0.00 0.00 0.00 3.18
1800 4955 9.993454 TTTCCAATTTGTTGAAATATGATGTCA 57.007 25.926 0.00 0.00 31.18 3.58
1802 4957 9.589111 TCCAATTTGTTGAAATATGATGTCATG 57.411 29.630 5.78 0.00 37.15 3.07
1803 4958 9.373603 CCAATTTGTTGAAATATGATGTCATGT 57.626 29.630 5.78 0.00 37.15 3.21
1805 4960 7.815398 TTTGTTGAAATATGATGTCATGTGC 57.185 32.000 5.78 0.00 37.15 4.57
1806 4961 6.762702 TGTTGAAATATGATGTCATGTGCT 57.237 33.333 5.78 0.00 37.15 4.40
1807 4962 7.160547 TGTTGAAATATGATGTCATGTGCTT 57.839 32.000 5.78 0.00 37.15 3.91
1808 4963 8.278729 TGTTGAAATATGATGTCATGTGCTTA 57.721 30.769 5.78 0.00 37.15 3.09
1809 4964 8.905850 TGTTGAAATATGATGTCATGTGCTTAT 58.094 29.630 5.78 0.00 37.15 1.73
1810 4965 9.740239 GTTGAAATATGATGTCATGTGCTTATT 57.260 29.630 5.78 0.00 37.15 1.40
1818 4973 9.740239 ATGATGTCATGTGCTTATTTTACAATC 57.260 29.630 0.00 0.00 34.83 2.67
1819 4974 8.959548 TGATGTCATGTGCTTATTTTACAATCT 58.040 29.630 0.00 0.00 0.00 2.40
1849 5004 9.753674 ATTGAAAAATGGGTATGAAACTAGAGA 57.246 29.630 0.00 0.00 0.00 3.10
1850 5005 9.753674 TTGAAAAATGGGTATGAAACTAGAGAT 57.246 29.630 0.00 0.00 0.00 2.75
1851 5006 9.177608 TGAAAAATGGGTATGAAACTAGAGATG 57.822 33.333 0.00 0.00 0.00 2.90
1852 5007 9.396022 GAAAAATGGGTATGAAACTAGAGATGA 57.604 33.333 0.00 0.00 0.00 2.92
1853 5008 8.970859 AAAATGGGTATGAAACTAGAGATGAG 57.029 34.615 0.00 0.00 0.00 2.90
1854 5009 7.682787 AATGGGTATGAAACTAGAGATGAGT 57.317 36.000 0.00 0.00 0.00 3.41
1855 5010 7.682787 ATGGGTATGAAACTAGAGATGAGTT 57.317 36.000 0.00 0.00 38.81 3.01
1856 5011 6.878317 TGGGTATGAAACTAGAGATGAGTTG 58.122 40.000 0.00 0.00 37.22 3.16
1857 5012 6.667848 TGGGTATGAAACTAGAGATGAGTTGA 59.332 38.462 0.00 0.00 37.22 3.18
1858 5013 6.981559 GGGTATGAAACTAGAGATGAGTTGAC 59.018 42.308 0.00 0.00 37.22 3.18
1859 5014 7.147811 GGGTATGAAACTAGAGATGAGTTGACT 60.148 40.741 0.00 0.00 37.22 3.41
1860 5015 8.904834 GGTATGAAACTAGAGATGAGTTGACTA 58.095 37.037 0.00 0.00 37.22 2.59
1863 5018 8.637196 TGAAACTAGAGATGAGTTGACTAAGA 57.363 34.615 0.00 0.00 37.22 2.10
1864 5019 9.078990 TGAAACTAGAGATGAGTTGACTAAGAA 57.921 33.333 0.00 0.00 37.22 2.52
1865 5020 9.915629 GAAACTAGAGATGAGTTGACTAAGAAA 57.084 33.333 0.00 0.00 37.22 2.52
1868 5023 9.699703 ACTAGAGATGAGTTGACTAAGAAAAAC 57.300 33.333 0.00 0.00 0.00 2.43
1869 5024 9.698309 CTAGAGATGAGTTGACTAAGAAAAACA 57.302 33.333 0.00 0.00 0.00 2.83
1891 5046 9.541143 AAACATAAAATAGACCAAAACTGGTTG 57.459 29.630 0.00 0.00 43.24 3.77
1892 5047 7.151976 ACATAAAATAGACCAAAACTGGTTGC 58.848 34.615 0.00 0.00 43.24 4.17
1893 5048 5.606348 AAAATAGACCAAAACTGGTTGCA 57.394 34.783 0.00 0.00 43.24 4.08
1894 5049 5.806654 AAATAGACCAAAACTGGTTGCAT 57.193 34.783 0.00 0.00 43.24 3.96
1895 5050 6.909550 AAATAGACCAAAACTGGTTGCATA 57.090 33.333 0.00 0.00 43.24 3.14
1896 5051 6.909550 AATAGACCAAAACTGGTTGCATAA 57.090 33.333 0.00 0.00 43.24 1.90
1897 5052 4.853924 AGACCAAAACTGGTTGCATAAG 57.146 40.909 0.00 0.00 43.24 1.73
1898 5053 4.215109 AGACCAAAACTGGTTGCATAAGT 58.785 39.130 0.00 0.00 43.24 2.24
1899 5054 4.649218 AGACCAAAACTGGTTGCATAAGTT 59.351 37.500 0.00 3.96 43.24 2.66
1900 5055 4.692228 ACCAAAACTGGTTGCATAAGTTG 58.308 39.130 9.24 1.06 39.57 3.16
1901 5056 4.057432 CCAAAACTGGTTGCATAAGTTGG 58.943 43.478 9.24 5.50 34.46 3.77
1902 5057 4.202202 CCAAAACTGGTTGCATAAGTTGGA 60.202 41.667 9.24 0.00 34.46 3.53
1903 5058 5.511202 CCAAAACTGGTTGCATAAGTTGGAT 60.511 40.000 9.24 0.00 34.46 3.41
1904 5059 5.806654 AAACTGGTTGCATAAGTTGGATT 57.193 34.783 9.24 0.00 34.46 3.01
1905 5060 6.909550 AAACTGGTTGCATAAGTTGGATTA 57.090 33.333 9.24 0.00 34.46 1.75
1906 5061 7.480760 AAACTGGTTGCATAAGTTGGATTAT 57.519 32.000 9.24 0.00 34.46 1.28
1907 5062 6.699575 ACTGGTTGCATAAGTTGGATTATC 57.300 37.500 0.00 0.00 0.00 1.75
1908 5063 6.186957 ACTGGTTGCATAAGTTGGATTATCA 58.813 36.000 0.00 0.00 0.00 2.15
1909 5064 6.835488 ACTGGTTGCATAAGTTGGATTATCAT 59.165 34.615 0.00 0.00 0.00 2.45
1910 5065 7.998383 ACTGGTTGCATAAGTTGGATTATCATA 59.002 33.333 0.00 0.00 0.00 2.15
1911 5066 8.759481 TGGTTGCATAAGTTGGATTATCATAA 57.241 30.769 0.00 0.00 0.00 1.90
1912 5067 9.365906 TGGTTGCATAAGTTGGATTATCATAAT 57.634 29.630 0.00 0.00 0.00 1.28
1936 5091 6.763303 ATTTCGTAATGCCAAACAAAGAAC 57.237 33.333 0.00 0.00 0.00 3.01
1937 5092 3.879427 TCGTAATGCCAAACAAAGAACG 58.121 40.909 0.00 0.00 0.00 3.95
1938 5093 3.560481 TCGTAATGCCAAACAAAGAACGA 59.440 39.130 0.00 0.00 32.89 3.85
1939 5094 3.906008 CGTAATGCCAAACAAAGAACGAG 59.094 43.478 0.00 0.00 0.00 4.18
1940 5095 4.319190 CGTAATGCCAAACAAAGAACGAGA 60.319 41.667 0.00 0.00 0.00 4.04
1941 5096 3.904136 ATGCCAAACAAAGAACGAGAG 57.096 42.857 0.00 0.00 0.00 3.20
1942 5097 2.912771 TGCCAAACAAAGAACGAGAGA 58.087 42.857 0.00 0.00 0.00 3.10
1943 5098 3.476552 TGCCAAACAAAGAACGAGAGAT 58.523 40.909 0.00 0.00 0.00 2.75
1944 5099 3.882888 TGCCAAACAAAGAACGAGAGATT 59.117 39.130 0.00 0.00 0.00 2.40
1945 5100 4.338118 TGCCAAACAAAGAACGAGAGATTT 59.662 37.500 0.00 0.00 0.00 2.17
1946 5101 4.676924 GCCAAACAAAGAACGAGAGATTTG 59.323 41.667 0.00 0.00 38.00 2.32
1947 5102 4.676924 CCAAACAAAGAACGAGAGATTTGC 59.323 41.667 0.00 0.00 36.65 3.68
1948 5103 5.273170 CAAACAAAGAACGAGAGATTTGCA 58.727 37.500 0.00 0.00 36.65 4.08
1949 5104 5.695851 AACAAAGAACGAGAGATTTGCAT 57.304 34.783 0.00 0.00 36.65 3.96
1950 5105 5.039480 ACAAAGAACGAGAGATTTGCATG 57.961 39.130 0.00 0.00 36.65 4.06
1951 5106 4.756642 ACAAAGAACGAGAGATTTGCATGA 59.243 37.500 0.00 0.00 36.65 3.07
1952 5107 5.413833 ACAAAGAACGAGAGATTTGCATGAT 59.586 36.000 0.00 0.00 36.65 2.45
1953 5108 6.072286 ACAAAGAACGAGAGATTTGCATGATT 60.072 34.615 0.00 0.00 36.65 2.57
1954 5109 5.731599 AGAACGAGAGATTTGCATGATTC 57.268 39.130 0.00 0.00 0.00 2.52
1955 5110 4.269603 AGAACGAGAGATTTGCATGATTCG 59.730 41.667 0.00 0.00 0.00 3.34
1956 5111 2.868583 ACGAGAGATTTGCATGATTCGG 59.131 45.455 0.00 0.00 0.00 4.30
1957 5112 2.349249 CGAGAGATTTGCATGATTCGGC 60.349 50.000 0.00 0.00 0.00 5.54
1958 5113 2.615447 GAGAGATTTGCATGATTCGGCA 59.385 45.455 0.00 0.00 38.46 5.69
1967 5122 5.611796 TGCATGATTCGGCAATATTCTAC 57.388 39.130 0.00 0.00 37.03 2.59
1968 5123 4.152223 TGCATGATTCGGCAATATTCTACG 59.848 41.667 0.00 0.00 37.03 3.51
1969 5124 4.152402 GCATGATTCGGCAATATTCTACGT 59.848 41.667 0.00 0.00 0.00 3.57
1970 5125 5.611919 CATGATTCGGCAATATTCTACGTG 58.388 41.667 0.00 0.00 0.00 4.49
1971 5126 4.689071 TGATTCGGCAATATTCTACGTGT 58.311 39.130 0.00 0.00 0.00 4.49
1972 5127 4.743151 TGATTCGGCAATATTCTACGTGTC 59.257 41.667 0.00 0.00 0.00 3.67
1973 5128 2.723209 TCGGCAATATTCTACGTGTCG 58.277 47.619 0.00 0.00 40.32 4.35
1974 5129 1.784856 CGGCAATATTCTACGTGTCGG 59.215 52.381 0.00 0.00 35.54 4.79
1975 5130 2.797087 CGGCAATATTCTACGTGTCGGT 60.797 50.000 0.00 0.00 35.54 4.69
1976 5131 2.538449 GGCAATATTCTACGTGTCGGTG 59.462 50.000 0.00 0.00 0.00 4.94
1977 5132 2.538449 GCAATATTCTACGTGTCGGTGG 59.462 50.000 0.00 0.00 0.00 4.61
1978 5133 3.735820 GCAATATTCTACGTGTCGGTGGA 60.736 47.826 0.00 0.00 0.00 4.02
1979 5134 3.705043 ATATTCTACGTGTCGGTGGAC 57.295 47.619 0.00 0.00 43.71 4.02
1980 5135 0.529378 ATTCTACGTGTCGGTGGACC 59.471 55.000 0.00 0.00 42.73 4.46
1993 5148 2.889852 GGTGGACCGATCAACTAGTTC 58.110 52.381 4.77 0.00 0.00 3.01
1994 5149 2.232941 GGTGGACCGATCAACTAGTTCA 59.767 50.000 4.77 0.00 0.00 3.18
1995 5150 3.118738 GGTGGACCGATCAACTAGTTCAT 60.119 47.826 4.77 0.00 0.00 2.57
1996 5151 4.113354 GTGGACCGATCAACTAGTTCATC 58.887 47.826 9.30 9.30 0.00 2.92
1997 5152 3.767131 TGGACCGATCAACTAGTTCATCA 59.233 43.478 18.17 0.00 0.00 3.07
1998 5153 4.221924 TGGACCGATCAACTAGTTCATCAA 59.778 41.667 18.17 0.00 0.00 2.57
1999 5154 4.806247 GGACCGATCAACTAGTTCATCAAG 59.194 45.833 18.17 11.48 0.00 3.02
2000 5155 5.394224 GGACCGATCAACTAGTTCATCAAGA 60.394 44.000 18.17 6.88 0.00 3.02
2001 5156 5.411781 ACCGATCAACTAGTTCATCAAGAC 58.588 41.667 18.17 0.00 0.00 3.01
2002 5157 5.047306 ACCGATCAACTAGTTCATCAAGACA 60.047 40.000 18.17 0.00 0.00 3.41
2003 5158 6.045318 CCGATCAACTAGTTCATCAAGACAT 58.955 40.000 18.17 0.00 0.00 3.06
2004 5159 6.536582 CCGATCAACTAGTTCATCAAGACATT 59.463 38.462 18.17 0.00 0.00 2.71
2005 5160 7.065085 CCGATCAACTAGTTCATCAAGACATTT 59.935 37.037 18.17 0.00 0.00 2.32
2006 5161 7.901889 CGATCAACTAGTTCATCAAGACATTTG 59.098 37.037 18.17 0.00 0.00 2.32
2007 5162 8.853077 ATCAACTAGTTCATCAAGACATTTGA 57.147 30.769 4.77 0.00 0.00 2.69
2008 5163 8.853077 TCAACTAGTTCATCAAGACATTTGAT 57.147 30.769 4.77 0.00 39.53 2.57
2009 5164 9.288576 TCAACTAGTTCATCAAGACATTTGATT 57.711 29.630 4.77 0.00 37.06 2.57
2010 5165 9.903682 CAACTAGTTCATCAAGACATTTGATTT 57.096 29.630 4.77 0.00 37.06 2.17
2011 5166 9.903682 AACTAGTTCATCAAGACATTTGATTTG 57.096 29.630 1.12 0.00 37.06 2.32
2012 5167 8.517878 ACTAGTTCATCAAGACATTTGATTTGG 58.482 33.333 0.00 0.00 37.06 3.28
2013 5168 7.294017 AGTTCATCAAGACATTTGATTTGGT 57.706 32.000 0.00 0.00 37.06 3.67
2014 5169 7.729116 AGTTCATCAAGACATTTGATTTGGTT 58.271 30.769 0.00 0.00 37.06 3.67
2015 5170 8.206189 AGTTCATCAAGACATTTGATTTGGTTT 58.794 29.630 0.00 0.00 37.06 3.27
2016 5171 9.474920 GTTCATCAAGACATTTGATTTGGTTTA 57.525 29.630 0.00 0.00 37.06 2.01
2025 5180 9.597999 GACATTTGATTTGGTTTATTTTTCTGC 57.402 29.630 0.00 0.00 0.00 4.26
2026 5181 8.281893 ACATTTGATTTGGTTTATTTTTCTGCG 58.718 29.630 0.00 0.00 0.00 5.18
2027 5182 6.777526 TTGATTTGGTTTATTTTTCTGCGG 57.222 33.333 0.00 0.00 0.00 5.69
2028 5183 5.233988 TGATTTGGTTTATTTTTCTGCGGG 58.766 37.500 0.00 0.00 0.00 6.13
2029 5184 3.669251 TTGGTTTATTTTTCTGCGGGG 57.331 42.857 0.00 0.00 0.00 5.73
2030 5185 1.896465 TGGTTTATTTTTCTGCGGGGG 59.104 47.619 0.00 0.00 0.00 5.40
2054 5209 3.304659 GCGGATTCAATGTCACACAAACT 60.305 43.478 0.00 0.00 0.00 2.66
2057 5212 4.261741 GGATTCAATGTCACACAAACTGCT 60.262 41.667 0.00 0.00 0.00 4.24
2072 5227 5.466393 ACAAACTGCTCATTTACCAATTTGC 59.534 36.000 0.00 0.00 0.00 3.68
2080 5235 4.624882 TCATTTACCAATTTGCGCACATTC 59.375 37.500 18.47 0.00 0.00 2.67
2109 5264 7.055667 TGAGCGAGGAGATTTGTAGAATTAT 57.944 36.000 0.00 0.00 0.00 1.28
2111 5266 7.055667 AGCGAGGAGATTTGTAGAATTATCA 57.944 36.000 0.00 0.00 0.00 2.15
2114 5269 7.115663 GCGAGGAGATTTGTAGAATTATCAGTC 59.884 40.741 0.00 0.00 0.00 3.51
2185 5342 4.571372 ACTATTCTTAGACACGGCTAGC 57.429 45.455 6.04 6.04 0.00 3.42
2195 5352 0.723414 CACGGCTAGCACAAGTCATG 59.277 55.000 18.24 0.00 0.00 3.07
2199 5356 1.339055 GGCTAGCACAAGTCATGGACA 60.339 52.381 18.24 0.00 34.60 4.02
2200 5357 1.734465 GCTAGCACAAGTCATGGACAC 59.266 52.381 10.63 0.00 34.60 3.67
2201 5358 2.871637 GCTAGCACAAGTCATGGACACA 60.872 50.000 10.63 0.00 34.60 3.72
2203 5360 1.949525 AGCACAAGTCATGGACACAAC 59.050 47.619 0.00 0.00 34.60 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 291 0.318441 CCTCTTGCTCGAGTGGTGAA 59.682 55.000 15.13 0.00 0.00 3.18
131 303 4.216257 ACATGTGTTGTGATAACCTCTTGC 59.784 41.667 0.00 0.00 37.11 4.01
155 327 6.153000 AGTGGTGTTGTTTGGTTACATACAAA 59.847 34.615 5.54 0.00 45.59 2.83
158 330 5.761165 AGTGGTGTTGTTTGGTTACATAC 57.239 39.130 0.00 0.00 0.00 2.39
173 345 0.819259 ACGCAGATGCAAAGTGGTGT 60.819 50.000 5.55 0.00 42.21 4.16
197 369 1.591327 GTGTTTGGTTGCAAGCCCG 60.591 57.895 24.81 0.00 0.00 6.13
216 388 4.609691 ATGAACAAAAACACTCGAACGT 57.390 36.364 0.00 0.00 0.00 3.99
223 395 7.068103 TCACCAGTATGAATGAACAAAAACACT 59.932 33.333 0.00 0.00 39.69 3.55
247 419 4.277174 ACGTAATTTGGTTGTCTGCATTCA 59.723 37.500 0.00 0.00 0.00 2.57
265 437 7.822334 AGACAGAAAATCATGTTCCATACGTAA 59.178 33.333 0.00 0.00 0.00 3.18
272 444 7.669304 TGGATAAAGACAGAAAATCATGTTCCA 59.331 33.333 0.00 0.00 31.91 3.53
274 446 8.734386 AGTGGATAAAGACAGAAAATCATGTTC 58.266 33.333 0.00 0.00 0.00 3.18
313 485 6.490241 ACCAAACTACCACTACTAACTTGT 57.510 37.500 0.00 0.00 0.00 3.16
317 489 4.999311 CCCAACCAAACTACCACTACTAAC 59.001 45.833 0.00 0.00 0.00 2.34
341 513 8.880244 TCATATGGTCTTAGGCAAACTACATAT 58.120 33.333 2.13 0.00 32.29 1.78
393 565 1.454663 GCAAATGAGAGCCTCCCCC 60.455 63.158 0.00 0.00 0.00 5.40
394 566 0.839946 TAGCAAATGAGAGCCTCCCC 59.160 55.000 0.00 0.00 0.00 4.81
442 614 2.189594 TTGTCCTCCTTGCATCTGTG 57.810 50.000 0.00 0.00 0.00 3.66
464 636 2.938956 ACTATCCTAACCTGCATGGC 57.061 50.000 0.00 0.00 40.22 4.40
517 689 7.173735 TCTGTTATTTCGGTTTAAAAGGGAGTC 59.826 37.037 0.00 0.00 0.00 3.36
531 703 4.766404 AGCTTTTGGTCTGTTATTTCGG 57.234 40.909 0.00 0.00 0.00 4.30
569 741 3.636764 CCAACCAAGGATAGGTATTTGGC 59.363 47.826 2.22 0.00 42.98 4.52
579 751 1.893315 AGCCTAGCCAACCAAGGATA 58.107 50.000 0.00 0.00 31.64 2.59
650 822 4.082787 AGGCCACATGTATTGTTCGAAAAG 60.083 41.667 5.01 0.00 36.00 2.27
749 925 1.627329 GGCAGCCAGAGGATGATATGA 59.373 52.381 6.55 0.00 42.34 2.15
839 3913 2.284190 ACGTACGAGCTAGGTAGAACC 58.716 52.381 24.41 0.00 38.99 3.62
888 3970 3.616956 ATGCGAGGAGAACAAAGATCA 57.383 42.857 0.00 0.00 0.00 2.92
905 4024 9.734620 TTAGATGCACACAAAATAGAAATATGC 57.265 29.630 0.00 0.00 0.00 3.14
908 4027 9.767684 CGTTTAGATGCACACAAAATAGAAATA 57.232 29.630 0.00 0.00 0.00 1.40
909 4028 8.296713 ACGTTTAGATGCACACAAAATAGAAAT 58.703 29.630 0.00 0.00 0.00 2.17
910 4029 7.644490 ACGTTTAGATGCACACAAAATAGAAA 58.356 30.769 0.00 0.00 0.00 2.52
911 4030 7.197071 ACGTTTAGATGCACACAAAATAGAA 57.803 32.000 0.00 0.00 0.00 2.10
912 4031 6.795098 ACGTTTAGATGCACACAAAATAGA 57.205 33.333 0.00 0.00 0.00 1.98
913 4032 7.059488 GTGAACGTTTAGATGCACACAAAATAG 59.941 37.037 0.46 0.00 0.00 1.73
914 4033 6.853872 GTGAACGTTTAGATGCACACAAAATA 59.146 34.615 0.46 0.00 0.00 1.40
915 4034 5.685511 GTGAACGTTTAGATGCACACAAAAT 59.314 36.000 0.46 0.00 0.00 1.82
916 4035 5.031578 GTGAACGTTTAGATGCACACAAAA 58.968 37.500 0.46 0.00 0.00 2.44
917 4036 4.593157 GTGAACGTTTAGATGCACACAAA 58.407 39.130 0.46 0.00 0.00 2.83
918 4037 3.302805 CGTGAACGTTTAGATGCACACAA 60.303 43.478 0.46 0.00 34.11 3.33
924 4043 2.984471 TCAGTCGTGAACGTTTAGATGC 59.016 45.455 0.46 0.00 40.80 3.91
1218 4366 0.908910 ACCGATAACATGGACAGGCA 59.091 50.000 0.00 0.00 0.00 4.75
1224 4372 0.387929 GCCTCGACCGATAACATGGA 59.612 55.000 0.00 0.00 0.00 3.41
1226 4374 2.900528 GGCCTCGACCGATAACATG 58.099 57.895 0.00 0.00 0.00 3.21
1407 4562 5.126061 GCTCCTAGCATGAATTCCTCAAAAA 59.874 40.000 2.27 0.00 41.89 1.94
1408 4563 4.641989 GCTCCTAGCATGAATTCCTCAAAA 59.358 41.667 2.27 0.00 41.89 2.44
1409 4564 4.080129 AGCTCCTAGCATGAATTCCTCAAA 60.080 41.667 2.27 0.00 45.56 2.69
1410 4565 3.457380 AGCTCCTAGCATGAATTCCTCAA 59.543 43.478 2.27 0.00 45.56 3.02
1411 4566 3.044156 AGCTCCTAGCATGAATTCCTCA 58.956 45.455 2.27 0.00 45.56 3.86
1412 4567 3.070734 TCAGCTCCTAGCATGAATTCCTC 59.929 47.826 2.27 0.00 45.56 3.71
1413 4568 3.044156 TCAGCTCCTAGCATGAATTCCT 58.956 45.455 2.27 0.00 45.56 3.36
1414 4569 3.137533 GTCAGCTCCTAGCATGAATTCC 58.862 50.000 2.27 0.00 45.56 3.01
1415 4570 3.801698 TGTCAGCTCCTAGCATGAATTC 58.198 45.455 0.00 0.00 45.56 2.17
1416 4571 3.920231 TGTCAGCTCCTAGCATGAATT 57.080 42.857 0.00 0.00 45.56 2.17
1417 4572 5.149973 CTATGTCAGCTCCTAGCATGAAT 57.850 43.478 0.00 0.00 45.56 2.57
1418 4573 4.597404 CTATGTCAGCTCCTAGCATGAA 57.403 45.455 0.00 0.00 45.56 2.57
1431 4586 5.215903 CCACTACGATTACAGCTATGTCAG 58.784 45.833 0.00 0.00 41.01 3.51
1432 4587 4.037565 CCCACTACGATTACAGCTATGTCA 59.962 45.833 0.00 0.00 41.01 3.58
1433 4588 4.547532 CCCACTACGATTACAGCTATGTC 58.452 47.826 0.00 0.00 41.01 3.06
1434 4589 3.243771 GCCCACTACGATTACAGCTATGT 60.244 47.826 0.00 0.00 43.76 2.29
1435 4590 3.005897 AGCCCACTACGATTACAGCTATG 59.994 47.826 0.00 0.00 0.00 2.23
1436 4591 3.231818 AGCCCACTACGATTACAGCTAT 58.768 45.455 0.00 0.00 0.00 2.97
1437 4592 2.662866 AGCCCACTACGATTACAGCTA 58.337 47.619 0.00 0.00 0.00 3.32
1438 4593 1.486211 AGCCCACTACGATTACAGCT 58.514 50.000 0.00 0.00 0.00 4.24
1446 4601 2.614481 GGTTCATTCAAGCCCACTACGA 60.614 50.000 0.00 0.00 0.00 3.43
1501 4656 5.542635 TGGATTCACCTGTATGGACCTATAC 59.457 44.000 0.00 0.41 39.71 1.47
1509 4664 3.891366 GGGAATTGGATTCACCTGTATGG 59.109 47.826 3.39 0.00 41.03 2.74
1575 4730 7.517614 TTGAACACAACCTGCATATTTTCTA 57.482 32.000 0.00 0.00 0.00 2.10
1577 4732 7.475771 TTTTGAACACAACCTGCATATTTTC 57.524 32.000 0.00 0.00 0.00 2.29
1578 4733 7.768120 TCTTTTTGAACACAACCTGCATATTTT 59.232 29.630 0.00 0.00 0.00 1.82
1582 4737 5.843673 TCTTTTTGAACACAACCTGCATA 57.156 34.783 0.00 0.00 0.00 3.14
1591 4746 7.768120 ACCTGCATAATTTTCTTTTTGAACACA 59.232 29.630 0.00 0.00 33.88 3.72
1592 4747 8.141835 ACCTGCATAATTTTCTTTTTGAACAC 57.858 30.769 0.00 0.00 33.88 3.32
1593 4748 8.729805 AACCTGCATAATTTTCTTTTTGAACA 57.270 26.923 0.00 0.00 33.88 3.18
1594 4749 8.825745 TGAACCTGCATAATTTTCTTTTTGAAC 58.174 29.630 0.00 0.00 33.88 3.18
1595 4750 8.954950 TGAACCTGCATAATTTTCTTTTTGAA 57.045 26.923 0.00 0.00 0.00 2.69
1596 4751 9.558396 AATGAACCTGCATAATTTTCTTTTTGA 57.442 25.926 0.00 0.00 0.00 2.69
1597 4752 9.601971 CAATGAACCTGCATAATTTTCTTTTTG 57.398 29.630 0.00 0.00 0.00 2.44
1598 4753 8.291740 GCAATGAACCTGCATAATTTTCTTTTT 58.708 29.630 0.00 0.00 39.69 1.94
1599 4754 7.444792 TGCAATGAACCTGCATAATTTTCTTTT 59.555 29.630 0.00 0.00 44.67 2.27
1600 4755 6.935771 TGCAATGAACCTGCATAATTTTCTTT 59.064 30.769 0.00 0.00 44.67 2.52
1601 4756 6.465948 TGCAATGAACCTGCATAATTTTCTT 58.534 32.000 0.00 0.00 44.67 2.52
1602 4757 6.040209 TGCAATGAACCTGCATAATTTTCT 57.960 33.333 0.00 0.00 44.67 2.52
1646 4801 8.544622 CCCACCCATACCTACAAAATAAAAATT 58.455 33.333 0.00 0.00 0.00 1.82
1647 4802 7.126573 CCCCACCCATACCTACAAAATAAAAAT 59.873 37.037 0.00 0.00 0.00 1.82
1648 4803 6.440965 CCCCACCCATACCTACAAAATAAAAA 59.559 38.462 0.00 0.00 0.00 1.94
1649 4804 5.958987 CCCCACCCATACCTACAAAATAAAA 59.041 40.000 0.00 0.00 0.00 1.52
1650 4805 5.520751 CCCCACCCATACCTACAAAATAAA 58.479 41.667 0.00 0.00 0.00 1.40
1651 4806 4.079096 CCCCCACCCATACCTACAAAATAA 60.079 45.833 0.00 0.00 0.00 1.40
1652 4807 3.464080 CCCCCACCCATACCTACAAAATA 59.536 47.826 0.00 0.00 0.00 1.40
1653 4808 2.246327 CCCCCACCCATACCTACAAAAT 59.754 50.000 0.00 0.00 0.00 1.82
1654 4809 1.641714 CCCCCACCCATACCTACAAAA 59.358 52.381 0.00 0.00 0.00 2.44
1655 4810 1.203583 TCCCCCACCCATACCTACAAA 60.204 52.381 0.00 0.00 0.00 2.83
1656 4811 0.422313 TCCCCCACCCATACCTACAA 59.578 55.000 0.00 0.00 0.00 2.41
1657 4812 0.422313 TTCCCCCACCCATACCTACA 59.578 55.000 0.00 0.00 0.00 2.74
1658 4813 1.423921 CATTCCCCCACCCATACCTAC 59.576 57.143 0.00 0.00 0.00 3.18
1659 4814 1.298693 TCATTCCCCCACCCATACCTA 59.701 52.381 0.00 0.00 0.00 3.08
1660 4815 0.047176 TCATTCCCCCACCCATACCT 59.953 55.000 0.00 0.00 0.00 3.08
1661 4816 0.930726 TTCATTCCCCCACCCATACC 59.069 55.000 0.00 0.00 0.00 2.73
1662 4817 2.838637 TTTCATTCCCCCACCCATAC 57.161 50.000 0.00 0.00 0.00 2.39
1663 4818 3.273351 TCATTTTCATTCCCCCACCCATA 59.727 43.478 0.00 0.00 0.00 2.74
1664 4819 2.045605 TCATTTTCATTCCCCCACCCAT 59.954 45.455 0.00 0.00 0.00 4.00
1665 4820 1.434773 TCATTTTCATTCCCCCACCCA 59.565 47.619 0.00 0.00 0.00 4.51
1666 4821 2.246091 TCATTTTCATTCCCCCACCC 57.754 50.000 0.00 0.00 0.00 4.61
1667 4822 5.366477 ACAATATCATTTTCATTCCCCCACC 59.634 40.000 0.00 0.00 0.00 4.61
1668 4823 6.462909 GGACAATATCATTTTCATTCCCCCAC 60.463 42.308 0.00 0.00 0.00 4.61
1669 4824 5.602145 GGACAATATCATTTTCATTCCCCCA 59.398 40.000 0.00 0.00 0.00 4.96
1670 4825 5.602145 TGGACAATATCATTTTCATTCCCCC 59.398 40.000 0.00 0.00 0.00 5.40
1671 4826 6.729690 TGGACAATATCATTTTCATTCCCC 57.270 37.500 0.00 0.00 0.00 4.81
1672 4827 8.645110 AGATTGGACAATATCATTTTCATTCCC 58.355 33.333 0.00 0.00 0.00 3.97
1702 4857 0.103208 ATGTCAAACGCCCGCAAAAA 59.897 45.000 0.00 0.00 0.00 1.94
1703 4858 0.596083 CATGTCAAACGCCCGCAAAA 60.596 50.000 0.00 0.00 0.00 2.44
1704 4859 1.007964 CATGTCAAACGCCCGCAAA 60.008 52.632 0.00 0.00 0.00 3.68
1705 4860 1.729470 AACATGTCAAACGCCCGCAA 61.729 50.000 0.00 0.00 0.00 4.85
1706 4861 1.729470 AAACATGTCAAACGCCCGCA 61.729 50.000 0.00 0.00 0.00 5.69
1707 4862 0.238817 TAAACATGTCAAACGCCCGC 59.761 50.000 0.00 0.00 0.00 6.13
1708 4863 1.533731 ACTAAACATGTCAAACGCCCG 59.466 47.619 0.00 0.00 0.00 6.13
1709 4864 2.550606 TCACTAAACATGTCAAACGCCC 59.449 45.455 0.00 0.00 0.00 6.13
1710 4865 3.002862 TGTCACTAAACATGTCAAACGCC 59.997 43.478 0.00 0.00 0.00 5.68
1711 4866 4.203950 TGTCACTAAACATGTCAAACGC 57.796 40.909 0.00 0.00 0.00 4.84
1712 4867 4.211389 GCTGTCACTAAACATGTCAAACG 58.789 43.478 0.00 0.00 0.00 3.60
1713 4868 4.036262 TGGCTGTCACTAAACATGTCAAAC 59.964 41.667 0.00 0.00 0.00 2.93
1714 4869 4.203226 TGGCTGTCACTAAACATGTCAAA 58.797 39.130 0.00 0.00 0.00 2.69
1715 4870 3.814625 TGGCTGTCACTAAACATGTCAA 58.185 40.909 0.00 0.00 0.00 3.18
1716 4871 3.483808 TGGCTGTCACTAAACATGTCA 57.516 42.857 0.00 0.00 0.00 3.58
1717 4872 3.375299 GGATGGCTGTCACTAAACATGTC 59.625 47.826 0.00 0.00 0.00 3.06
1718 4873 3.244875 TGGATGGCTGTCACTAAACATGT 60.245 43.478 0.00 0.00 0.00 3.21
1719 4874 3.346315 TGGATGGCTGTCACTAAACATG 58.654 45.455 0.00 0.00 0.00 3.21
1720 4875 3.264193 TCTGGATGGCTGTCACTAAACAT 59.736 43.478 0.00 0.00 0.00 2.71
1721 4876 2.637382 TCTGGATGGCTGTCACTAAACA 59.363 45.455 0.00 0.00 0.00 2.83
1722 4877 3.265791 CTCTGGATGGCTGTCACTAAAC 58.734 50.000 0.00 0.00 0.00 2.01
1723 4878 2.355108 GCTCTGGATGGCTGTCACTAAA 60.355 50.000 0.00 0.00 0.00 1.85
1724 4879 1.208052 GCTCTGGATGGCTGTCACTAA 59.792 52.381 0.00 0.00 0.00 2.24
1725 4880 0.826715 GCTCTGGATGGCTGTCACTA 59.173 55.000 0.00 0.00 0.00 2.74
1726 4881 1.196766 TGCTCTGGATGGCTGTCACT 61.197 55.000 0.00 0.00 0.00 3.41
1727 4882 0.107312 ATGCTCTGGATGGCTGTCAC 60.107 55.000 0.00 0.00 0.00 3.67
1728 4883 1.139654 GTATGCTCTGGATGGCTGTCA 59.860 52.381 0.00 0.00 0.00 3.58
1729 4884 1.871408 CGTATGCTCTGGATGGCTGTC 60.871 57.143 0.00 0.00 0.00 3.51
1730 4885 0.105593 CGTATGCTCTGGATGGCTGT 59.894 55.000 0.00 0.00 0.00 4.40
1731 4886 1.226686 GCGTATGCTCTGGATGGCTG 61.227 60.000 0.00 0.00 38.39 4.85
1732 4887 1.070445 GCGTATGCTCTGGATGGCT 59.930 57.895 0.00 0.00 38.39 4.75
1733 4888 1.226686 CTGCGTATGCTCTGGATGGC 61.227 60.000 8.69 0.00 43.34 4.40
1734 4889 0.105593 ACTGCGTATGCTCTGGATGG 59.894 55.000 8.69 0.00 43.34 3.51
1735 4890 1.945387 AACTGCGTATGCTCTGGATG 58.055 50.000 8.69 0.00 43.34 3.51
1736 4891 2.543861 CGTAACTGCGTATGCTCTGGAT 60.544 50.000 8.69 0.00 43.34 3.41
1737 4892 1.202256 CGTAACTGCGTATGCTCTGGA 60.202 52.381 8.69 0.00 43.34 3.86
1738 4893 1.200483 CGTAACTGCGTATGCTCTGG 58.800 55.000 8.69 0.00 43.34 3.86
1739 4894 0.572590 GCGTAACTGCGTATGCTCTG 59.427 55.000 8.69 1.34 43.34 3.35
1740 4895 0.172578 TGCGTAACTGCGTATGCTCT 59.827 50.000 8.69 0.00 43.34 4.09
1741 4896 0.297820 GTGCGTAACTGCGTATGCTC 59.702 55.000 8.69 1.60 43.34 4.26
1742 4897 0.389296 TGTGCGTAACTGCGTATGCT 60.389 50.000 8.69 0.00 43.34 3.79
1743 4898 0.247145 GTGTGCGTAACTGCGTATGC 60.247 55.000 0.00 0.00 43.20 3.14
1744 4899 1.064582 TGTGTGCGTAACTGCGTATG 58.935 50.000 0.00 0.00 37.81 2.39
1745 4900 1.065358 GTGTGTGCGTAACTGCGTAT 58.935 50.000 0.00 0.00 37.81 3.06
1746 4901 0.031043 AGTGTGTGCGTAACTGCGTA 59.969 50.000 0.00 0.00 37.81 4.42
1747 4902 0.031043 TAGTGTGTGCGTAACTGCGT 59.969 50.000 0.00 0.00 37.81 5.24
1748 4903 1.124297 CTTAGTGTGTGCGTAACTGCG 59.876 52.381 0.00 0.00 37.81 5.18
1749 4904 2.400399 TCTTAGTGTGTGCGTAACTGC 58.600 47.619 0.00 0.00 0.00 4.40
1750 4905 4.684242 TGAATCTTAGTGTGTGCGTAACTG 59.316 41.667 0.00 0.00 0.00 3.16
1751 4906 4.878439 TGAATCTTAGTGTGTGCGTAACT 58.122 39.130 0.00 0.00 0.00 2.24
1752 4907 5.779806 ATGAATCTTAGTGTGTGCGTAAC 57.220 39.130 0.00 0.00 0.00 2.50
1753 4908 6.128391 GGAAATGAATCTTAGTGTGTGCGTAA 60.128 38.462 0.00 0.00 0.00 3.18
1754 4909 5.350365 GGAAATGAATCTTAGTGTGTGCGTA 59.650 40.000 0.00 0.00 0.00 4.42
1755 4910 4.154195 GGAAATGAATCTTAGTGTGTGCGT 59.846 41.667 0.00 0.00 0.00 5.24
1756 4911 4.154015 TGGAAATGAATCTTAGTGTGTGCG 59.846 41.667 0.00 0.00 0.00 5.34
1757 4912 5.627499 TGGAAATGAATCTTAGTGTGTGC 57.373 39.130 0.00 0.00 0.00 4.57
1758 4913 8.918658 CAAATTGGAAATGAATCTTAGTGTGTG 58.081 33.333 0.00 0.00 0.00 3.82
1759 4914 8.641541 ACAAATTGGAAATGAATCTTAGTGTGT 58.358 29.630 0.00 0.00 0.00 3.72
1760 4915 9.480053 AACAAATTGGAAATGAATCTTAGTGTG 57.520 29.630 0.00 0.00 0.00 3.82
1761 4916 9.480053 CAACAAATTGGAAATGAATCTTAGTGT 57.520 29.630 0.00 0.00 31.63 3.55
1762 4917 9.695526 TCAACAAATTGGAAATGAATCTTAGTG 57.304 29.630 0.00 0.00 36.39 2.74
1774 4929 9.993454 TGACATCATATTTCAACAAATTGGAAA 57.007 25.926 0.00 0.00 36.86 3.13
1776 4931 9.589111 CATGACATCATATTTCAACAAATTGGA 57.411 29.630 0.00 0.00 33.98 3.53
1777 4932 9.373603 ACATGACATCATATTTCAACAAATTGG 57.626 29.630 0.00 0.00 33.98 3.16
1779 4934 8.875803 GCACATGACATCATATTTCAACAAATT 58.124 29.630 0.00 0.00 33.95 1.82
1780 4935 8.255206 AGCACATGACATCATATTTCAACAAAT 58.745 29.630 0.00 0.00 36.18 2.32
1781 4936 7.604549 AGCACATGACATCATATTTCAACAAA 58.395 30.769 0.00 0.00 34.26 2.83
1782 4937 7.160547 AGCACATGACATCATATTTCAACAA 57.839 32.000 0.00 0.00 34.26 2.83
1783 4938 6.762702 AGCACATGACATCATATTTCAACA 57.237 33.333 0.00 0.00 34.26 3.33
1784 4939 9.740239 AATAAGCACATGACATCATATTTCAAC 57.260 29.630 0.00 0.00 34.26 3.18
1792 4947 9.740239 GATTGTAAAATAAGCACATGACATCAT 57.260 29.630 0.00 0.00 36.96 2.45
1793 4948 8.959548 AGATTGTAAAATAAGCACATGACATCA 58.040 29.630 0.00 0.00 0.00 3.07
1823 4978 9.753674 TCTCTAGTTTCATACCCATTTTTCAAT 57.246 29.630 0.00 0.00 0.00 2.57
1824 4979 9.753674 ATCTCTAGTTTCATACCCATTTTTCAA 57.246 29.630 0.00 0.00 0.00 2.69
1825 4980 9.177608 CATCTCTAGTTTCATACCCATTTTTCA 57.822 33.333 0.00 0.00 0.00 2.69
1826 4981 9.396022 TCATCTCTAGTTTCATACCCATTTTTC 57.604 33.333 0.00 0.00 0.00 2.29
1827 4982 9.401058 CTCATCTCTAGTTTCATACCCATTTTT 57.599 33.333 0.00 0.00 0.00 1.94
1828 4983 8.552296 ACTCATCTCTAGTTTCATACCCATTTT 58.448 33.333 0.00 0.00 0.00 1.82
1829 4984 8.095452 ACTCATCTCTAGTTTCATACCCATTT 57.905 34.615 0.00 0.00 0.00 2.32
1830 4985 7.682787 ACTCATCTCTAGTTTCATACCCATT 57.317 36.000 0.00 0.00 0.00 3.16
1831 4986 7.345653 TCAACTCATCTCTAGTTTCATACCCAT 59.654 37.037 0.00 0.00 34.99 4.00
1832 4987 6.667848 TCAACTCATCTCTAGTTTCATACCCA 59.332 38.462 0.00 0.00 34.99 4.51
1833 4988 6.981559 GTCAACTCATCTCTAGTTTCATACCC 59.018 42.308 0.00 0.00 34.99 3.69
1834 4989 7.777095 AGTCAACTCATCTCTAGTTTCATACC 58.223 38.462 0.00 0.00 34.99 2.73
1837 4992 9.249053 TCTTAGTCAACTCATCTCTAGTTTCAT 57.751 33.333 0.00 0.00 34.99 2.57
1838 4993 8.637196 TCTTAGTCAACTCATCTCTAGTTTCA 57.363 34.615 0.00 0.00 34.99 2.69
1839 4994 9.915629 TTTCTTAGTCAACTCATCTCTAGTTTC 57.084 33.333 0.00 0.00 34.99 2.78
1842 4997 9.699703 GTTTTTCTTAGTCAACTCATCTCTAGT 57.300 33.333 0.00 0.00 0.00 2.57
1843 4998 9.698309 TGTTTTTCTTAGTCAACTCATCTCTAG 57.302 33.333 0.00 0.00 0.00 2.43
1880 5035 4.942852 TCCAACTTATGCAACCAGTTTTG 58.057 39.130 5.94 2.42 0.00 2.44
1881 5036 5.806654 ATCCAACTTATGCAACCAGTTTT 57.193 34.783 5.94 0.00 0.00 2.43
1882 5037 5.806654 AATCCAACTTATGCAACCAGTTT 57.193 34.783 5.94 0.00 0.00 2.66
1883 5038 6.663093 TGATAATCCAACTTATGCAACCAGTT 59.337 34.615 0.00 0.00 0.00 3.16
1884 5039 6.186957 TGATAATCCAACTTATGCAACCAGT 58.813 36.000 0.00 0.00 0.00 4.00
1885 5040 6.698008 TGATAATCCAACTTATGCAACCAG 57.302 37.500 0.00 0.00 0.00 4.00
1886 5041 8.759481 TTATGATAATCCAACTTATGCAACCA 57.241 30.769 0.00 0.00 0.00 3.67
1910 5065 8.921670 GTTCTTTGTTTGGCATTACGAAATATT 58.078 29.630 0.00 0.00 0.00 1.28
1911 5066 7.272515 CGTTCTTTGTTTGGCATTACGAAATAT 59.727 33.333 0.00 0.00 0.00 1.28
1912 5067 6.579292 CGTTCTTTGTTTGGCATTACGAAATA 59.421 34.615 0.00 0.00 0.00 1.40
1913 5068 5.401079 CGTTCTTTGTTTGGCATTACGAAAT 59.599 36.000 0.00 0.00 0.00 2.17
1914 5069 4.735822 CGTTCTTTGTTTGGCATTACGAAA 59.264 37.500 0.00 0.00 0.00 3.46
1915 5070 4.035324 TCGTTCTTTGTTTGGCATTACGAA 59.965 37.500 0.00 0.00 0.00 3.85
1916 5071 3.560481 TCGTTCTTTGTTTGGCATTACGA 59.440 39.130 0.00 0.00 0.00 3.43
1917 5072 3.879427 TCGTTCTTTGTTTGGCATTACG 58.121 40.909 0.00 0.00 0.00 3.18
1918 5073 5.049680 TCTCTCGTTCTTTGTTTGGCATTAC 60.050 40.000 0.00 0.00 0.00 1.89
1919 5074 5.060506 TCTCTCGTTCTTTGTTTGGCATTA 58.939 37.500 0.00 0.00 0.00 1.90
1920 5075 3.882888 TCTCTCGTTCTTTGTTTGGCATT 59.117 39.130 0.00 0.00 0.00 3.56
1921 5076 3.476552 TCTCTCGTTCTTTGTTTGGCAT 58.523 40.909 0.00 0.00 0.00 4.40
1922 5077 2.912771 TCTCTCGTTCTTTGTTTGGCA 58.087 42.857 0.00 0.00 0.00 4.92
1923 5078 4.489679 AATCTCTCGTTCTTTGTTTGGC 57.510 40.909 0.00 0.00 0.00 4.52
1924 5079 4.676924 GCAAATCTCTCGTTCTTTGTTTGG 59.323 41.667 0.00 0.00 32.51 3.28
1925 5080 5.273170 TGCAAATCTCTCGTTCTTTGTTTG 58.727 37.500 0.00 0.00 32.51 2.93
1926 5081 5.499139 TGCAAATCTCTCGTTCTTTGTTT 57.501 34.783 0.00 0.00 32.51 2.83
1927 5082 5.239306 TCATGCAAATCTCTCGTTCTTTGTT 59.761 36.000 0.00 0.00 32.51 2.83
1928 5083 4.756642 TCATGCAAATCTCTCGTTCTTTGT 59.243 37.500 0.00 0.00 32.51 2.83
1929 5084 5.287170 TCATGCAAATCTCTCGTTCTTTG 57.713 39.130 0.00 0.00 0.00 2.77
1930 5085 6.506500 AATCATGCAAATCTCTCGTTCTTT 57.493 33.333 0.00 0.00 0.00 2.52
1931 5086 5.220548 CGAATCATGCAAATCTCTCGTTCTT 60.221 40.000 0.00 0.00 0.00 2.52
1932 5087 4.269603 CGAATCATGCAAATCTCTCGTTCT 59.730 41.667 0.00 0.00 0.00 3.01
1933 5088 4.512657 CGAATCATGCAAATCTCTCGTTC 58.487 43.478 0.00 0.00 0.00 3.95
1934 5089 3.310774 CCGAATCATGCAAATCTCTCGTT 59.689 43.478 0.00 0.00 0.00 3.85
1935 5090 2.868583 CCGAATCATGCAAATCTCTCGT 59.131 45.455 0.00 0.00 0.00 4.18
1936 5091 2.349249 GCCGAATCATGCAAATCTCTCG 60.349 50.000 0.00 0.00 0.00 4.04
1937 5092 2.615447 TGCCGAATCATGCAAATCTCTC 59.385 45.455 0.00 0.00 33.87 3.20
1938 5093 2.646930 TGCCGAATCATGCAAATCTCT 58.353 42.857 0.00 0.00 33.87 3.10
1939 5094 3.425577 TTGCCGAATCATGCAAATCTC 57.574 42.857 4.94 0.00 43.94 2.75
1945 5100 4.152223 CGTAGAATATTGCCGAATCATGCA 59.848 41.667 0.00 0.00 35.27 3.96
1946 5101 4.152402 ACGTAGAATATTGCCGAATCATGC 59.848 41.667 0.00 0.00 0.00 4.06
1947 5102 5.177511 ACACGTAGAATATTGCCGAATCATG 59.822 40.000 0.00 0.00 0.00 3.07
1948 5103 5.297547 ACACGTAGAATATTGCCGAATCAT 58.702 37.500 0.00 0.00 0.00 2.45
1949 5104 4.689071 ACACGTAGAATATTGCCGAATCA 58.311 39.130 0.00 0.00 0.00 2.57
1950 5105 4.143597 CGACACGTAGAATATTGCCGAATC 60.144 45.833 0.00 0.00 0.00 2.52
1951 5106 3.734231 CGACACGTAGAATATTGCCGAAT 59.266 43.478 0.00 0.00 0.00 3.34
1952 5107 3.110358 CGACACGTAGAATATTGCCGAA 58.890 45.455 0.00 0.00 0.00 4.30
1953 5108 2.542205 CCGACACGTAGAATATTGCCGA 60.542 50.000 0.00 0.00 0.00 5.54
1954 5109 1.784856 CCGACACGTAGAATATTGCCG 59.215 52.381 0.00 0.00 0.00 5.69
1955 5110 2.538449 CACCGACACGTAGAATATTGCC 59.462 50.000 0.00 0.00 0.00 4.52
1956 5111 2.538449 CCACCGACACGTAGAATATTGC 59.462 50.000 0.00 0.00 0.00 3.56
1957 5112 3.795101 GTCCACCGACACGTAGAATATTG 59.205 47.826 0.00 0.00 38.99 1.90
1958 5113 3.181483 GGTCCACCGACACGTAGAATATT 60.181 47.826 0.00 0.00 41.13 1.28
1959 5114 2.360165 GGTCCACCGACACGTAGAATAT 59.640 50.000 0.00 0.00 41.13 1.28
1960 5115 1.745087 GGTCCACCGACACGTAGAATA 59.255 52.381 0.00 0.00 41.13 1.75
1961 5116 0.529378 GGTCCACCGACACGTAGAAT 59.471 55.000 0.00 0.00 41.13 2.40
1962 5117 1.959085 GGTCCACCGACACGTAGAA 59.041 57.895 0.00 0.00 41.13 2.10
1963 5118 3.672293 GGTCCACCGACACGTAGA 58.328 61.111 0.00 0.00 41.13 2.59
1973 5128 2.232941 TGAACTAGTTGATCGGTCCACC 59.767 50.000 14.14 0.00 0.00 4.61
1974 5129 3.587797 TGAACTAGTTGATCGGTCCAC 57.412 47.619 14.14 0.00 0.00 4.02
1975 5130 3.767131 TGATGAACTAGTTGATCGGTCCA 59.233 43.478 24.17 10.34 36.24 4.02
1976 5131 4.386867 TGATGAACTAGTTGATCGGTCC 57.613 45.455 24.17 7.06 36.24 4.46
1977 5132 5.517054 GTCTTGATGAACTAGTTGATCGGTC 59.483 44.000 24.17 15.48 36.24 4.79
1978 5133 5.047306 TGTCTTGATGAACTAGTTGATCGGT 60.047 40.000 24.17 0.00 36.24 4.69
1979 5134 5.410924 TGTCTTGATGAACTAGTTGATCGG 58.589 41.667 24.17 19.77 36.24 4.18
1980 5135 7.531280 AATGTCTTGATGAACTAGTTGATCG 57.469 36.000 24.17 14.37 36.24 3.69
1981 5136 8.939929 TCAAATGTCTTGATGAACTAGTTGATC 58.060 33.333 23.45 23.45 34.46 2.92
1982 5137 8.853077 TCAAATGTCTTGATGAACTAGTTGAT 57.147 30.769 14.14 10.55 0.00 2.57
1983 5138 8.853077 ATCAAATGTCTTGATGAACTAGTTGA 57.147 30.769 14.14 4.68 37.71 3.18
1984 5139 9.903682 AAATCAAATGTCTTGATGAACTAGTTG 57.096 29.630 14.14 0.00 38.96 3.16
1985 5140 9.903682 CAAATCAAATGTCTTGATGAACTAGTT 57.096 29.630 8.13 8.13 38.96 2.24
1986 5141 8.517878 CCAAATCAAATGTCTTGATGAACTAGT 58.482 33.333 0.94 0.00 38.96 2.57
1987 5142 8.517878 ACCAAATCAAATGTCTTGATGAACTAG 58.482 33.333 0.94 0.00 38.96 2.57
1988 5143 8.408043 ACCAAATCAAATGTCTTGATGAACTA 57.592 30.769 0.94 0.00 38.96 2.24
1989 5144 7.294017 ACCAAATCAAATGTCTTGATGAACT 57.706 32.000 0.94 0.00 38.96 3.01
1990 5145 7.951530 AACCAAATCAAATGTCTTGATGAAC 57.048 32.000 0.94 0.00 38.96 3.18
1999 5154 9.597999 GCAGAAAAATAAACCAAATCAAATGTC 57.402 29.630 0.00 0.00 0.00 3.06
2000 5155 8.281893 CGCAGAAAAATAAACCAAATCAAATGT 58.718 29.630 0.00 0.00 0.00 2.71
2001 5156 7.745594 CCGCAGAAAAATAAACCAAATCAAATG 59.254 33.333 0.00 0.00 0.00 2.32
2002 5157 7.094848 CCCGCAGAAAAATAAACCAAATCAAAT 60.095 33.333 0.00 0.00 0.00 2.32
2003 5158 6.203723 CCCGCAGAAAAATAAACCAAATCAAA 59.796 34.615 0.00 0.00 0.00 2.69
2004 5159 5.698545 CCCGCAGAAAAATAAACCAAATCAA 59.301 36.000 0.00 0.00 0.00 2.57
2005 5160 5.233988 CCCGCAGAAAAATAAACCAAATCA 58.766 37.500 0.00 0.00 0.00 2.57
2006 5161 4.629634 CCCCGCAGAAAAATAAACCAAATC 59.370 41.667 0.00 0.00 0.00 2.17
2007 5162 4.564613 CCCCCGCAGAAAAATAAACCAAAT 60.565 41.667 0.00 0.00 0.00 2.32
2008 5163 3.244249 CCCCCGCAGAAAAATAAACCAAA 60.244 43.478 0.00 0.00 0.00 3.28
2009 5164 2.300437 CCCCCGCAGAAAAATAAACCAA 59.700 45.455 0.00 0.00 0.00 3.67
2010 5165 1.896465 CCCCCGCAGAAAAATAAACCA 59.104 47.619 0.00 0.00 0.00 3.67
2011 5166 2.665649 CCCCCGCAGAAAAATAAACC 57.334 50.000 0.00 0.00 0.00 3.27
2028 5183 1.077068 TGACATTGAATCCGCCCCC 60.077 57.895 0.00 0.00 0.00 5.40
2029 5184 0.679640 TGTGACATTGAATCCGCCCC 60.680 55.000 0.00 0.00 0.00 5.80
2030 5185 0.451783 GTGTGACATTGAATCCGCCC 59.548 55.000 0.00 0.00 0.00 6.13
2031 5186 1.164411 TGTGTGACATTGAATCCGCC 58.836 50.000 0.00 0.00 0.00 6.13
2032 5187 2.979813 GTTTGTGTGACATTGAATCCGC 59.020 45.455 0.00 0.00 0.00 5.54
2033 5188 4.221342 CAGTTTGTGTGACATTGAATCCG 58.779 43.478 0.00 0.00 0.00 4.18
2034 5189 3.983344 GCAGTTTGTGTGACATTGAATCC 59.017 43.478 0.00 0.00 0.00 3.01
2035 5190 4.863491 AGCAGTTTGTGTGACATTGAATC 58.137 39.130 0.00 0.00 0.00 2.52
2036 5191 4.338964 TGAGCAGTTTGTGTGACATTGAAT 59.661 37.500 0.00 0.00 0.00 2.57
2037 5192 3.693578 TGAGCAGTTTGTGTGACATTGAA 59.306 39.130 0.00 0.00 0.00 2.69
2038 5193 3.277715 TGAGCAGTTTGTGTGACATTGA 58.722 40.909 0.00 0.00 0.00 2.57
2039 5194 3.696281 TGAGCAGTTTGTGTGACATTG 57.304 42.857 0.00 0.00 0.00 2.82
2040 5195 4.924305 AATGAGCAGTTTGTGTGACATT 57.076 36.364 0.00 0.00 0.00 2.71
2041 5196 4.924305 AAATGAGCAGTTTGTGTGACAT 57.076 36.364 0.00 0.00 0.00 3.06
2042 5197 4.036262 GGTAAATGAGCAGTTTGTGTGACA 59.964 41.667 0.00 0.00 0.00 3.58
2043 5198 4.036262 TGGTAAATGAGCAGTTTGTGTGAC 59.964 41.667 0.00 0.00 0.00 3.67
2054 5209 2.029560 TGCGCAAATTGGTAAATGAGCA 60.030 40.909 8.16 0.60 44.37 4.26
2057 5212 3.650070 TGTGCGCAAATTGGTAAATGA 57.350 38.095 14.00 0.00 0.00 2.57
2080 5235 3.077359 ACAAATCTCCTCGCTCAAAAGG 58.923 45.455 0.00 0.00 0.00 3.11
2114 5269 7.202016 ACATACATTGTCTGTTGGTAAACTG 57.798 36.000 2.23 0.00 39.39 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.