Multiple sequence alignment - TraesCS3B01G102900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G102900 chr3B 100.000 5125 0 0 1 5125 69610233 69605109 0.000000e+00 9465
1 TraesCS3B01G102900 chr3A 92.524 2876 154 31 797 3630 56401623 56398767 0.000000e+00 4063
2 TraesCS3B01G102900 chr3A 88.215 874 38 18 4194 5053 56398021 56397199 0.000000e+00 983
3 TraesCS3B01G102900 chr3A 90.889 461 34 3 3677 4130 56398755 56398296 3.390000e-171 612
4 TraesCS3B01G102900 chr3A 93.559 295 18 1 220 514 56403578 56403285 6.090000e-119 438
5 TraesCS3B01G102900 chr3D 93.956 2482 97 12 1008 3483 44198848 44196414 0.000000e+00 3703
6 TraesCS3B01G102900 chr3D 91.580 1639 81 15 3516 5125 44196417 44194807 0.000000e+00 2209
7 TraesCS3B01G102900 chr3D 90.845 142 8 5 638 777 532240142 532240004 8.760000e-43 185
8 TraesCS3B01G102900 chr3D 88.387 155 10 5 785 934 44200615 44200464 4.080000e-41 180
9 TraesCS3B01G102900 chrUn 100.000 165 0 0 1 165 41282674 41282510 6.450000e-79 305
10 TraesCS3B01G102900 chr4D 92.754 138 9 1 641 777 165913366 165913229 1.130000e-46 198
11 TraesCS3B01G102900 chr7A 94.531 128 5 2 649 774 462339185 462339312 4.050000e-46 196
12 TraesCS3B01G102900 chr2B 93.846 130 6 1 649 776 34111181 34111052 1.460000e-45 195
13 TraesCS3B01G102900 chr2B 94.737 95 4 1 1292 1385 722833346 722833252 4.140000e-31 147
14 TraesCS3B01G102900 chr2A 93.233 133 7 1 650 780 580939519 580939387 1.460000e-45 195
15 TraesCS3B01G102900 chr2A 91.304 138 10 1 643 778 301430076 301429939 2.440000e-43 187
16 TraesCS3B01G102900 chr6B 91.971 137 9 1 643 777 705095678 705095542 1.880000e-44 191
17 TraesCS3B01G102900 chr5D 91.912 136 9 1 641 774 179325805 179325940 6.770000e-44 189
18 TraesCS3B01G102900 chr5B 89.262 149 12 3 628 774 250221280 250221426 3.150000e-42 183
19 TraesCS3B01G102900 chr7B 94.737 95 4 1 1292 1385 576424830 576424736 4.140000e-31 147
20 TraesCS3B01G102900 chr5A 94.737 95 4 1 1292 1385 547635249 547635343 4.140000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G102900 chr3B 69605109 69610233 5124 True 9465.000000 9465 100.000000 1 5125 1 chr3B.!!$R1 5124
1 TraesCS3B01G102900 chr3A 56397199 56403578 6379 True 1524.000000 4063 91.296750 220 5053 4 chr3A.!!$R1 4833
2 TraesCS3B01G102900 chr3D 44194807 44200615 5808 True 2030.666667 3703 91.307667 785 5125 3 chr3D.!!$R2 4340

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.103208 CTCGGACCTACATGTGGAGC 59.897 60.0 11.31 1.85 0.0 4.70 F
1124 4106 0.039618 CAGCAACCCCTACCACCATT 59.960 55.0 0.00 0.00 0.0 3.16 F
1167 4149 0.253327 ATTTTCTCCGGCCTCCTCAC 59.747 55.0 0.00 0.00 0.0 3.51 F
2336 5324 0.239347 CACTGCCAAAGAAGCTTCGG 59.761 55.0 20.43 16.37 0.0 4.30 F
2446 5434 0.596577 TGGACCGACAGTTCTTCTCG 59.403 55.0 0.00 0.00 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 4119 0.114364 GGAGAAAATGGGGTGGTGGT 59.886 55.000 0.00 0.0 0.00 4.16 R
2296 5284 0.673333 TTTGCCGCATGTCTGACGAT 60.673 50.000 2.98 0.0 0.00 3.73 R
2467 5455 1.957177 ACTCTCTGCTCTTCGTGTTGA 59.043 47.619 0.00 0.0 0.00 3.18 R
3976 6983 0.445436 CACGCTAAGCCTTCAAGCTG 59.555 55.000 0.00 0.0 44.11 4.24 R
4382 7615 2.862541 TGTTGCATTCTGTACTGGCTT 58.137 42.857 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.713553 ACATACACCAACAATCAGTGTCA 58.286 39.130 0.00 0.00 43.42 3.58
23 24 4.756642 ACATACACCAACAATCAGTGTCAG 59.243 41.667 0.00 0.00 43.42 3.51
24 25 3.281727 ACACCAACAATCAGTGTCAGT 57.718 42.857 0.00 0.00 40.65 3.41
25 26 4.415881 ACACCAACAATCAGTGTCAGTA 57.584 40.909 0.00 0.00 40.65 2.74
26 27 4.776349 ACACCAACAATCAGTGTCAGTAA 58.224 39.130 0.00 0.00 40.65 2.24
27 28 5.376625 ACACCAACAATCAGTGTCAGTAAT 58.623 37.500 0.00 0.00 40.65 1.89
28 29 5.470098 ACACCAACAATCAGTGTCAGTAATC 59.530 40.000 0.00 0.00 40.65 1.75
29 30 5.469760 CACCAACAATCAGTGTCAGTAATCA 59.530 40.000 0.00 0.00 40.60 2.57
30 31 6.149973 CACCAACAATCAGTGTCAGTAATCAT 59.850 38.462 0.00 0.00 40.60 2.45
31 32 6.372659 ACCAACAATCAGTGTCAGTAATCATC 59.627 38.462 0.00 0.00 40.60 2.92
32 33 6.372381 CCAACAATCAGTGTCAGTAATCATCA 59.628 38.462 0.00 0.00 40.60 3.07
33 34 7.413767 CCAACAATCAGTGTCAGTAATCATCAG 60.414 40.741 0.00 0.00 40.60 2.90
34 35 6.705302 ACAATCAGTGTCAGTAATCATCAGT 58.295 36.000 0.00 0.00 34.38 3.41
35 36 6.592994 ACAATCAGTGTCAGTAATCATCAGTG 59.407 38.462 0.00 0.00 34.38 3.66
36 37 5.982890 TCAGTGTCAGTAATCATCAGTGA 57.017 39.130 0.00 0.00 39.04 3.41
37 38 6.345096 TCAGTGTCAGTAATCATCAGTGAA 57.655 37.500 0.00 0.00 38.01 3.18
38 39 6.939622 TCAGTGTCAGTAATCATCAGTGAAT 58.060 36.000 0.00 0.00 38.01 2.57
39 40 6.815142 TCAGTGTCAGTAATCATCAGTGAATG 59.185 38.462 0.00 0.00 38.01 2.67
40 41 5.583854 AGTGTCAGTAATCATCAGTGAATGC 59.416 40.000 0.00 0.00 38.01 3.56
41 42 5.583854 GTGTCAGTAATCATCAGTGAATGCT 59.416 40.000 0.00 0.00 38.01 3.79
42 43 6.093219 GTGTCAGTAATCATCAGTGAATGCTT 59.907 38.462 0.00 0.00 38.01 3.91
43 44 6.656270 TGTCAGTAATCATCAGTGAATGCTTT 59.344 34.615 0.00 0.00 38.01 3.51
44 45 7.175467 TGTCAGTAATCATCAGTGAATGCTTTT 59.825 33.333 0.00 0.00 38.01 2.27
45 46 7.695618 GTCAGTAATCATCAGTGAATGCTTTTC 59.304 37.037 0.00 0.00 38.01 2.29
46 47 7.391275 TCAGTAATCATCAGTGAATGCTTTTCA 59.609 33.333 0.00 0.00 38.01 2.69
47 48 8.024865 CAGTAATCATCAGTGAATGCTTTTCAA 58.975 33.333 0.00 0.00 38.01 2.69
48 49 8.579006 AGTAATCATCAGTGAATGCTTTTCAAA 58.421 29.630 0.00 0.00 38.01 2.69
49 50 9.362539 GTAATCATCAGTGAATGCTTTTCAAAT 57.637 29.630 0.00 0.00 38.01 2.32
51 52 8.922058 ATCATCAGTGAATGCTTTTCAAATAC 57.078 30.769 0.00 0.00 38.01 1.89
52 53 7.884257 TCATCAGTGAATGCTTTTCAAATACA 58.116 30.769 0.00 0.00 0.00 2.29
53 54 8.024865 TCATCAGTGAATGCTTTTCAAATACAG 58.975 33.333 0.00 0.00 0.00 2.74
54 55 6.680810 TCAGTGAATGCTTTTCAAATACAGG 58.319 36.000 4.54 0.00 0.00 4.00
55 56 5.865552 CAGTGAATGCTTTTCAAATACAGGG 59.134 40.000 4.54 0.00 0.00 4.45
56 57 5.774690 AGTGAATGCTTTTCAAATACAGGGA 59.225 36.000 4.54 0.00 0.00 4.20
57 58 6.267471 AGTGAATGCTTTTCAAATACAGGGAA 59.733 34.615 4.54 0.00 0.00 3.97
58 59 6.928492 GTGAATGCTTTTCAAATACAGGGAAA 59.072 34.615 4.54 0.00 0.00 3.13
59 60 6.928492 TGAATGCTTTTCAAATACAGGGAAAC 59.072 34.615 0.88 0.00 30.86 2.78
60 61 6.670695 ATGCTTTTCAAATACAGGGAAACT 57.329 33.333 0.00 0.00 30.86 2.66
61 62 7.775053 ATGCTTTTCAAATACAGGGAAACTA 57.225 32.000 0.00 0.00 30.86 2.24
62 63 6.977213 TGCTTTTCAAATACAGGGAAACTAC 58.023 36.000 0.00 0.00 30.86 2.73
63 64 6.547880 TGCTTTTCAAATACAGGGAAACTACA 59.452 34.615 0.00 0.00 30.86 2.74
64 65 7.068839 TGCTTTTCAAATACAGGGAAACTACAA 59.931 33.333 0.00 0.00 30.86 2.41
65 66 7.595130 GCTTTTCAAATACAGGGAAACTACAAG 59.405 37.037 0.00 0.00 30.86 3.16
66 67 6.569179 TTCAAATACAGGGAAACTACAAGC 57.431 37.500 0.00 0.00 0.00 4.01
67 68 5.626142 TCAAATACAGGGAAACTACAAGCA 58.374 37.500 0.00 0.00 0.00 3.91
68 69 6.065374 TCAAATACAGGGAAACTACAAGCAA 58.935 36.000 0.00 0.00 0.00 3.91
69 70 6.719370 TCAAATACAGGGAAACTACAAGCAAT 59.281 34.615 0.00 0.00 0.00 3.56
70 71 7.885922 TCAAATACAGGGAAACTACAAGCAATA 59.114 33.333 0.00 0.00 0.00 1.90
71 72 8.519526 CAAATACAGGGAAACTACAAGCAATAA 58.480 33.333 0.00 0.00 0.00 1.40
72 73 7.865706 ATACAGGGAAACTACAAGCAATAAG 57.134 36.000 0.00 0.00 0.00 1.73
73 74 5.876357 ACAGGGAAACTACAAGCAATAAGA 58.124 37.500 0.00 0.00 0.00 2.10
74 75 6.303839 ACAGGGAAACTACAAGCAATAAGAA 58.696 36.000 0.00 0.00 0.00 2.52
75 76 6.431234 ACAGGGAAACTACAAGCAATAAGAAG 59.569 38.462 0.00 0.00 0.00 2.85
76 77 5.416013 AGGGAAACTACAAGCAATAAGAAGC 59.584 40.000 0.00 0.00 0.00 3.86
77 78 5.183140 GGGAAACTACAAGCAATAAGAAGCA 59.817 40.000 0.00 0.00 0.00 3.91
78 79 6.294508 GGGAAACTACAAGCAATAAGAAGCAA 60.295 38.462 0.00 0.00 0.00 3.91
79 80 6.803807 GGAAACTACAAGCAATAAGAAGCAAG 59.196 38.462 0.00 0.00 0.00 4.01
80 81 6.884280 AACTACAAGCAATAAGAAGCAAGT 57.116 33.333 0.00 0.00 0.00 3.16
81 82 7.979444 AACTACAAGCAATAAGAAGCAAGTA 57.021 32.000 0.00 0.00 0.00 2.24
82 83 7.979444 ACTACAAGCAATAAGAAGCAAGTAA 57.021 32.000 0.00 0.00 0.00 2.24
83 84 8.034058 ACTACAAGCAATAAGAAGCAAGTAAG 57.966 34.615 0.00 0.00 0.00 2.34
84 85 6.259550 ACAAGCAATAAGAAGCAAGTAAGG 57.740 37.500 0.00 0.00 0.00 2.69
85 86 5.183904 ACAAGCAATAAGAAGCAAGTAAGGG 59.816 40.000 0.00 0.00 0.00 3.95
86 87 4.273318 AGCAATAAGAAGCAAGTAAGGGG 58.727 43.478 0.00 0.00 0.00 4.79
87 88 4.018415 AGCAATAAGAAGCAAGTAAGGGGA 60.018 41.667 0.00 0.00 0.00 4.81
88 89 4.705023 GCAATAAGAAGCAAGTAAGGGGAA 59.295 41.667 0.00 0.00 0.00 3.97
89 90 5.185056 GCAATAAGAAGCAAGTAAGGGGAAA 59.815 40.000 0.00 0.00 0.00 3.13
90 91 6.621613 CAATAAGAAGCAAGTAAGGGGAAAC 58.378 40.000 0.00 0.00 0.00 2.78
91 92 3.876309 AGAAGCAAGTAAGGGGAAACA 57.124 42.857 0.00 0.00 0.00 2.83
92 93 3.487372 AGAAGCAAGTAAGGGGAAACAC 58.513 45.455 0.00 0.00 0.00 3.32
100 101 4.599036 GGGGAAACACTGGCTTGT 57.401 55.556 0.00 0.00 0.00 3.16
101 102 2.820845 GGGGAAACACTGGCTTGTT 58.179 52.632 0.00 0.00 41.62 2.83
102 103 0.673985 GGGGAAACACTGGCTTGTTC 59.326 55.000 5.67 1.37 38.82 3.18
103 104 0.673985 GGGAAACACTGGCTTGTTCC 59.326 55.000 5.67 8.27 38.82 3.62
104 105 1.398692 GGAAACACTGGCTTGTTCCA 58.601 50.000 5.67 0.00 38.82 3.53
105 106 1.067060 GGAAACACTGGCTTGTTCCAC 59.933 52.381 5.67 2.34 38.82 4.02
106 107 2.024414 GAAACACTGGCTTGTTCCACT 58.976 47.619 5.67 0.00 38.82 4.00
107 108 3.211045 GAAACACTGGCTTGTTCCACTA 58.789 45.455 5.67 0.00 38.82 2.74
108 109 2.256117 ACACTGGCTTGTTCCACTAC 57.744 50.000 0.00 0.00 31.74 2.73
109 110 1.768870 ACACTGGCTTGTTCCACTACT 59.231 47.619 0.00 0.00 31.74 2.57
110 111 2.146342 CACTGGCTTGTTCCACTACTG 58.854 52.381 0.00 0.00 31.74 2.74
111 112 1.768870 ACTGGCTTGTTCCACTACTGT 59.231 47.619 0.00 0.00 31.74 3.55
112 113 2.172717 ACTGGCTTGTTCCACTACTGTT 59.827 45.455 0.00 0.00 31.74 3.16
113 114 2.549754 CTGGCTTGTTCCACTACTGTTG 59.450 50.000 0.00 0.00 31.74 3.33
114 115 1.266989 GGCTTGTTCCACTACTGTTGC 59.733 52.381 0.00 0.00 0.00 4.17
115 116 2.222027 GCTTGTTCCACTACTGTTGCT 58.778 47.619 0.00 0.00 0.00 3.91
116 117 2.224314 GCTTGTTCCACTACTGTTGCTC 59.776 50.000 0.00 0.00 0.00 4.26
117 118 2.148916 TGTTCCACTACTGTTGCTCG 57.851 50.000 0.00 0.00 0.00 5.03
118 119 1.270094 TGTTCCACTACTGTTGCTCGG 60.270 52.381 0.00 0.00 0.00 4.63
119 120 1.000506 GTTCCACTACTGTTGCTCGGA 59.999 52.381 0.00 0.00 0.00 4.55
120 121 0.601558 TCCACTACTGTTGCTCGGAC 59.398 55.000 0.00 0.00 0.00 4.79
121 122 0.317160 CCACTACTGTTGCTCGGACA 59.683 55.000 0.00 0.00 0.00 4.02
122 123 1.270094 CCACTACTGTTGCTCGGACAA 60.270 52.381 0.00 0.00 0.00 3.18
123 124 2.612972 CCACTACTGTTGCTCGGACAAT 60.613 50.000 0.00 0.00 0.00 2.71
124 125 3.368013 CCACTACTGTTGCTCGGACAATA 60.368 47.826 0.00 0.00 0.00 1.90
125 126 4.433615 CACTACTGTTGCTCGGACAATAT 58.566 43.478 0.00 0.00 0.00 1.28
126 127 4.870426 CACTACTGTTGCTCGGACAATATT 59.130 41.667 0.00 0.00 0.00 1.28
127 128 4.870426 ACTACTGTTGCTCGGACAATATTG 59.130 41.667 14.01 14.01 0.00 1.90
128 129 2.420022 ACTGTTGCTCGGACAATATTGC 59.580 45.455 15.48 8.16 0.00 3.56
129 130 2.419673 CTGTTGCTCGGACAATATTGCA 59.580 45.455 15.48 3.61 0.00 4.08
130 131 2.816672 TGTTGCTCGGACAATATTGCAA 59.183 40.909 15.48 0.00 37.96 4.08
131 132 3.254411 TGTTGCTCGGACAATATTGCAAA 59.746 39.130 15.48 0.00 41.14 3.68
132 133 3.485947 TGCTCGGACAATATTGCAAAC 57.514 42.857 15.48 4.93 0.00 2.93
133 134 2.163412 TGCTCGGACAATATTGCAAACC 59.837 45.455 15.48 12.08 0.00 3.27
134 135 2.423538 GCTCGGACAATATTGCAAACCT 59.576 45.455 15.48 0.00 0.00 3.50
135 136 3.487544 GCTCGGACAATATTGCAAACCTC 60.488 47.826 15.48 4.33 0.00 3.85
136 137 3.680490 TCGGACAATATTGCAAACCTCA 58.320 40.909 15.48 1.93 0.00 3.86
137 138 4.269183 TCGGACAATATTGCAAACCTCAT 58.731 39.130 15.48 0.00 0.00 2.90
138 139 4.704540 TCGGACAATATTGCAAACCTCATT 59.295 37.500 15.48 0.00 0.00 2.57
139 140 5.883115 TCGGACAATATTGCAAACCTCATTA 59.117 36.000 15.48 0.00 0.00 1.90
140 141 6.375736 TCGGACAATATTGCAAACCTCATTAA 59.624 34.615 15.48 0.00 0.00 1.40
141 142 7.032580 CGGACAATATTGCAAACCTCATTAAA 58.967 34.615 15.48 0.00 0.00 1.52
142 143 7.706179 CGGACAATATTGCAAACCTCATTAAAT 59.294 33.333 15.48 0.00 0.00 1.40
149 150 7.716799 TTGCAAACCTCATTAAATAGGATGT 57.283 32.000 12.21 0.00 36.66 3.06
150 151 7.333528 TGCAAACCTCATTAAATAGGATGTC 57.666 36.000 12.21 8.06 36.66 3.06
151 152 6.889177 TGCAAACCTCATTAAATAGGATGTCA 59.111 34.615 12.21 9.74 36.66 3.58
152 153 7.560991 TGCAAACCTCATTAAATAGGATGTCAT 59.439 33.333 12.21 0.00 36.66 3.06
153 154 7.864379 GCAAACCTCATTAAATAGGATGTCATG 59.136 37.037 12.21 0.00 36.66 3.07
154 155 8.355169 CAAACCTCATTAAATAGGATGTCATGG 58.645 37.037 12.21 0.00 36.66 3.66
155 156 6.006449 ACCTCATTAAATAGGATGTCATGGC 58.994 40.000 12.21 0.00 36.66 4.40
156 157 5.416952 CCTCATTAAATAGGATGTCATGGCC 59.583 44.000 0.00 0.00 34.58 5.36
157 158 5.951204 TCATTAAATAGGATGTCATGGCCA 58.049 37.500 8.56 8.56 0.00 5.36
158 159 5.769662 TCATTAAATAGGATGTCATGGCCAC 59.230 40.000 8.16 0.00 0.00 5.01
159 160 2.664402 AATAGGATGTCATGGCCACC 57.336 50.000 8.16 2.88 0.00 4.61
160 161 1.521764 ATAGGATGTCATGGCCACCA 58.478 50.000 8.16 5.68 38.19 4.17
161 162 1.521764 TAGGATGTCATGGCCACCAT 58.478 50.000 8.16 11.22 46.37 3.55
162 163 0.184451 AGGATGTCATGGCCACCATC 59.816 55.000 24.00 24.00 43.15 3.51
163 164 0.106569 GGATGTCATGGCCACCATCA 60.107 55.000 29.03 18.80 43.15 3.07
164 165 1.315690 GATGTCATGGCCACCATCAG 58.684 55.000 25.79 8.35 43.15 2.90
165 166 0.754217 ATGTCATGGCCACCATCAGC 60.754 55.000 8.16 0.00 43.15 4.26
166 167 1.378911 GTCATGGCCACCATCAGCA 60.379 57.895 8.16 0.00 43.15 4.41
167 168 1.077285 TCATGGCCACCATCAGCAG 60.077 57.895 8.16 0.00 43.15 4.24
168 169 2.125326 CATGGCCACCATCAGCAGG 61.125 63.158 8.16 0.00 43.15 4.85
169 170 2.619446 ATGGCCACCATCAGCAGGT 61.619 57.895 8.16 0.00 40.74 4.00
170 171 2.036256 GGCCACCATCAGCAGGTT 59.964 61.111 0.00 0.00 37.23 3.50
171 172 2.048603 GGCCACCATCAGCAGGTTC 61.049 63.158 0.00 0.00 37.23 3.62
172 173 1.001641 GCCACCATCAGCAGGTTCT 60.002 57.895 0.00 0.00 37.23 3.01
173 174 1.028868 GCCACCATCAGCAGGTTCTC 61.029 60.000 0.00 0.00 37.23 2.87
174 175 0.742281 CCACCATCAGCAGGTTCTCG 60.742 60.000 0.00 0.00 37.23 4.04
175 176 0.742281 CACCATCAGCAGGTTCTCGG 60.742 60.000 0.00 0.00 37.23 4.63
176 177 0.904865 ACCATCAGCAGGTTCTCGGA 60.905 55.000 0.00 0.00 35.33 4.55
177 178 0.460987 CCATCAGCAGGTTCTCGGAC 60.461 60.000 0.00 0.00 0.00 4.79
178 179 0.460987 CATCAGCAGGTTCTCGGACC 60.461 60.000 0.00 0.00 40.11 4.46
186 187 2.295253 GGTTCTCGGACCTACATGTG 57.705 55.000 9.11 0.00 36.73 3.21
187 188 1.134788 GGTTCTCGGACCTACATGTGG 60.135 57.143 9.11 5.17 36.73 4.17
188 189 1.822990 GTTCTCGGACCTACATGTGGA 59.177 52.381 11.31 0.00 0.00 4.02
189 190 1.763968 TCTCGGACCTACATGTGGAG 58.236 55.000 11.31 0.00 0.00 3.86
190 191 0.103208 CTCGGACCTACATGTGGAGC 59.897 60.000 11.31 1.85 0.00 4.70
191 192 0.613572 TCGGACCTACATGTGGAGCA 60.614 55.000 11.31 0.00 0.00 4.26
192 193 0.465705 CGGACCTACATGTGGAGCAT 59.534 55.000 11.31 0.00 38.60 3.79
193 194 1.134401 CGGACCTACATGTGGAGCATT 60.134 52.381 11.31 0.00 35.19 3.56
194 195 2.680805 CGGACCTACATGTGGAGCATTT 60.681 50.000 11.31 0.00 35.19 2.32
195 196 2.945668 GGACCTACATGTGGAGCATTTC 59.054 50.000 11.31 2.10 35.19 2.17
196 197 2.609459 GACCTACATGTGGAGCATTTCG 59.391 50.000 11.31 0.00 35.19 3.46
197 198 2.236146 ACCTACATGTGGAGCATTTCGA 59.764 45.455 11.31 0.00 35.19 3.71
198 199 3.270027 CCTACATGTGGAGCATTTCGAA 58.730 45.455 11.31 0.00 35.19 3.71
199 200 3.879295 CCTACATGTGGAGCATTTCGAAT 59.121 43.478 11.31 0.00 35.19 3.34
200 201 3.770263 ACATGTGGAGCATTTCGAATG 57.230 42.857 0.00 0.86 35.19 2.67
201 202 2.424601 ACATGTGGAGCATTTCGAATGG 59.575 45.455 0.00 0.00 35.19 3.16
202 203 0.810648 TGTGGAGCATTTCGAATGGC 59.189 50.000 12.21 12.21 0.00 4.40
203 204 1.098050 GTGGAGCATTTCGAATGGCT 58.902 50.000 20.08 20.08 39.75 4.75
204 205 1.097232 TGGAGCATTTCGAATGGCTG 58.903 50.000 23.62 10.04 36.59 4.85
205 206 1.339920 TGGAGCATTTCGAATGGCTGA 60.340 47.619 23.62 10.80 36.59 4.26
206 207 1.745087 GGAGCATTTCGAATGGCTGAA 59.255 47.619 23.62 0.00 36.59 3.02
207 208 2.478539 GGAGCATTTCGAATGGCTGAAC 60.479 50.000 23.62 12.35 36.59 3.18
208 209 2.421424 GAGCATTTCGAATGGCTGAACT 59.579 45.455 23.62 4.78 36.59 3.01
209 210 2.421424 AGCATTTCGAATGGCTGAACTC 59.579 45.455 19.52 0.00 34.83 3.01
210 211 2.162208 GCATTTCGAATGGCTGAACTCA 59.838 45.455 12.71 0.00 0.00 3.41
211 212 3.730061 GCATTTCGAATGGCTGAACTCAG 60.730 47.826 12.71 2.17 46.40 3.35
240 241 3.454858 TGTGCTCCTCCCTAAGAAAGAT 58.545 45.455 0.00 0.00 0.00 2.40
247 248 2.507471 CTCCCTAAGAAAGATGGTGCCT 59.493 50.000 0.00 0.00 0.00 4.75
285 286 2.442413 TGCCCAATTAGCCTTACACAC 58.558 47.619 0.00 0.00 0.00 3.82
301 302 2.556189 ACACACGCCATTGCAAAGATTA 59.444 40.909 1.71 0.00 37.32 1.75
302 303 2.916716 CACACGCCATTGCAAAGATTAC 59.083 45.455 1.71 0.00 37.32 1.89
306 307 1.826327 CCATTGCAAAGATTACGGCG 58.174 50.000 4.80 4.80 0.00 6.46
317 318 0.519961 ATTACGGCGAAACTGTTGGC 59.480 50.000 16.62 7.96 39.22 4.52
338 339 2.621407 CCATGTAACTTGCCCCTCACAT 60.621 50.000 0.00 0.00 0.00 3.21
339 340 2.198827 TGTAACTTGCCCCTCACATG 57.801 50.000 0.00 0.00 0.00 3.21
360 361 2.398554 CGCCCTCATTCCCAACACG 61.399 63.158 0.00 0.00 0.00 4.49
421 422 4.277174 ACTTCATGTTTGTCCGCATTTACA 59.723 37.500 0.00 0.00 0.00 2.41
482 483 7.510549 TTTCTCAAGTTTGACATAAGGAAGG 57.489 36.000 0.00 0.00 32.90 3.46
493 494 3.715015 AGGAAGGCCTTCGACTCC 58.285 61.111 33.73 23.48 43.90 3.85
509 510 0.179100 CTCCGTGCACTGGGAGTATG 60.179 60.000 24.87 7.68 43.91 2.39
514 515 2.165641 CGTGCACTGGGAGTATGTCTTA 59.834 50.000 16.19 0.00 0.00 2.10
515 516 3.181475 CGTGCACTGGGAGTATGTCTTAT 60.181 47.826 16.19 0.00 0.00 1.73
516 517 4.680708 CGTGCACTGGGAGTATGTCTTATT 60.681 45.833 16.19 0.00 0.00 1.40
517 518 5.186198 GTGCACTGGGAGTATGTCTTATTT 58.814 41.667 10.32 0.00 0.00 1.40
518 519 6.346096 GTGCACTGGGAGTATGTCTTATTTA 58.654 40.000 10.32 0.00 0.00 1.40
519 520 6.821665 GTGCACTGGGAGTATGTCTTATTTAA 59.178 38.462 10.32 0.00 0.00 1.52
520 521 7.499232 GTGCACTGGGAGTATGTCTTATTTAAT 59.501 37.037 10.32 0.00 0.00 1.40
521 522 7.498900 TGCACTGGGAGTATGTCTTATTTAATG 59.501 37.037 0.00 0.00 0.00 1.90
522 523 7.715249 GCACTGGGAGTATGTCTTATTTAATGA 59.285 37.037 0.00 0.00 0.00 2.57
523 524 9.613428 CACTGGGAGTATGTCTTATTTAATGAA 57.387 33.333 0.00 0.00 0.00 2.57
526 527 9.391006 TGGGAGTATGTCTTATTTAATGAACAC 57.609 33.333 0.00 0.00 0.00 3.32
527 528 9.391006 GGGAGTATGTCTTATTTAATGAACACA 57.609 33.333 0.00 0.00 0.00 3.72
545 546 5.652744 ACACAGTATTGTTCTGTTTCGTC 57.347 39.130 0.00 0.00 43.14 4.20
546 547 4.208460 ACACAGTATTGTTCTGTTTCGTCG 59.792 41.667 0.00 0.00 43.14 5.12
547 548 4.443063 CACAGTATTGTTCTGTTTCGTCGA 59.557 41.667 0.00 0.00 43.14 4.20
549 550 5.118664 ACAGTATTGTTCTGTTTCGTCGATG 59.881 40.000 0.00 0.00 42.50 3.84
550 551 4.625742 AGTATTGTTCTGTTTCGTCGATGG 59.374 41.667 4.48 0.00 0.00 3.51
551 552 2.519377 TGTTCTGTTTCGTCGATGGT 57.481 45.000 4.48 0.00 0.00 3.55
552 553 3.646611 TGTTCTGTTTCGTCGATGGTA 57.353 42.857 4.48 0.00 0.00 3.25
553 554 3.311106 TGTTCTGTTTCGTCGATGGTAC 58.689 45.455 4.48 4.12 0.00 3.34
554 555 3.005050 TGTTCTGTTTCGTCGATGGTACT 59.995 43.478 4.48 0.00 0.00 2.73
555 556 3.928727 TCTGTTTCGTCGATGGTACTT 57.071 42.857 4.48 0.00 0.00 2.24
557 558 4.624015 TCTGTTTCGTCGATGGTACTTTT 58.376 39.130 4.48 0.00 0.00 2.27
558 559 5.051816 TCTGTTTCGTCGATGGTACTTTTT 58.948 37.500 4.48 0.00 0.00 1.94
593 594 9.912634 TTTTATGTGATTGATCTTTTGTTCCTC 57.087 29.630 0.00 0.00 0.00 3.71
594 595 8.634335 TTATGTGATTGATCTTTTGTTCCTCA 57.366 30.769 0.00 0.00 0.00 3.86
595 596 6.317789 TGTGATTGATCTTTTGTTCCTCAC 57.682 37.500 0.00 0.00 34.22 3.51
596 597 5.827267 TGTGATTGATCTTTTGTTCCTCACA 59.173 36.000 0.00 0.00 37.41 3.58
597 598 6.491062 TGTGATTGATCTTTTGTTCCTCACAT 59.509 34.615 0.00 0.00 36.28 3.21
598 599 7.665145 TGTGATTGATCTTTTGTTCCTCACATA 59.335 33.333 0.00 0.00 36.28 2.29
599 600 8.680903 GTGATTGATCTTTTGTTCCTCACATAT 58.319 33.333 0.00 0.00 34.43 1.78
603 604 9.904198 TTGATCTTTTGTTCCTCACATATATGA 57.096 29.630 19.63 0.00 34.43 2.15
607 608 9.904198 TCTTTTGTTCCTCACATATATGATCAA 57.096 29.630 19.63 5.46 34.43 2.57
626 627 8.319057 TGATCAATAATAAGTACCCACTCTGT 57.681 34.615 0.00 0.00 32.29 3.41
627 628 9.429109 TGATCAATAATAAGTACCCACTCTGTA 57.571 33.333 0.00 0.00 32.29 2.74
662 789 7.317722 AGATTATTTAGTACTCCCACCATCC 57.682 40.000 0.00 0.00 0.00 3.51
665 792 2.832643 TAGTACTCCCACCATCCGAA 57.167 50.000 0.00 0.00 0.00 4.30
666 793 1.946984 AGTACTCCCACCATCCGAAA 58.053 50.000 0.00 0.00 0.00 3.46
670 797 3.277142 ACTCCCACCATCCGAAAATAC 57.723 47.619 0.00 0.00 0.00 1.89
675 802 3.377172 CCCACCATCCGAAAATACTTGTC 59.623 47.826 0.00 0.00 0.00 3.18
676 803 4.006989 CCACCATCCGAAAATACTTGTCA 58.993 43.478 0.00 0.00 0.00 3.58
677 804 4.640201 CCACCATCCGAAAATACTTGTCAT 59.360 41.667 0.00 0.00 0.00 3.06
678 805 5.125417 CCACCATCCGAAAATACTTGTCATT 59.875 40.000 0.00 0.00 0.00 2.57
679 806 6.317642 CCACCATCCGAAAATACTTGTCATTA 59.682 38.462 0.00 0.00 0.00 1.90
680 807 7.148154 CCACCATCCGAAAATACTTGTCATTAA 60.148 37.037 0.00 0.00 0.00 1.40
681 808 8.240682 CACCATCCGAAAATACTTGTCATTAAA 58.759 33.333 0.00 0.00 0.00 1.52
685 812 9.801873 ATCCGAAAATACTTGTCATTAAAATGG 57.198 29.630 3.00 0.00 37.03 3.16
687 814 9.801873 CCGAAAATACTTGTCATTAAAATGGAT 57.198 29.630 3.00 0.00 37.03 3.41
695 822 9.942850 ACTTGTCATTAAAATGGATAAAAAGGG 57.057 29.630 3.00 0.00 37.03 3.95
717 844 8.795842 AGGGATGTATCTAGAACTAGAATACG 57.204 38.462 14.25 0.00 44.44 3.06
718 845 8.384718 AGGGATGTATCTAGAACTAGAATACGT 58.615 37.037 14.25 15.60 44.44 3.57
719 846 8.667463 GGGATGTATCTAGAACTAGAATACGTC 58.333 40.741 23.37 23.37 44.44 4.34
761 888 9.865321 ATTCATTTTGATGACAAGTATTTCCAG 57.135 29.630 0.00 0.00 37.32 3.86
762 889 8.634335 TCATTTTGATGACAAGTATTTCCAGA 57.366 30.769 0.00 0.00 37.32 3.86
764 891 6.480524 TTTGATGACAAGTATTTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
765 892 4.503910 TGATGACAAGTATTTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
766 893 4.221924 TGATGACAAGTATTTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
767 894 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
768 895 3.056107 TGACAAGTATTTCCAGACGGAGG 60.056 47.826 0.00 0.00 44.10 4.30
769 896 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
770 897 2.500098 CAAGTATTTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
771 898 2.389715 AGTATTTCCAGACGGAGGGAG 58.610 52.381 0.00 0.00 44.10 4.30
772 899 2.108970 GTATTTCCAGACGGAGGGAGT 58.891 52.381 0.00 0.00 44.10 3.85
773 900 2.544844 ATTTCCAGACGGAGGGAGTA 57.455 50.000 0.00 0.00 44.10 2.59
775 902 2.544844 TTCCAGACGGAGGGAGTATT 57.455 50.000 0.00 0.00 44.10 1.89
776 903 2.544844 TCCAGACGGAGGGAGTATTT 57.455 50.000 0.00 0.00 35.91 1.40
777 904 2.829023 TCCAGACGGAGGGAGTATTTT 58.171 47.619 0.00 0.00 35.91 1.82
780 907 3.449737 CCAGACGGAGGGAGTATTTTACA 59.550 47.826 0.00 0.00 0.00 2.41
781 908 4.441634 CCAGACGGAGGGAGTATTTTACAG 60.442 50.000 0.00 0.00 0.00 2.74
782 909 4.401519 CAGACGGAGGGAGTATTTTACAGA 59.598 45.833 0.00 0.00 0.00 3.41
783 910 4.401837 AGACGGAGGGAGTATTTTACAGAC 59.598 45.833 0.00 0.00 0.00 3.51
787 914 5.451520 CGGAGGGAGTATTTTACAGACGAAT 60.452 44.000 0.00 0.00 0.00 3.34
809 2190 4.628963 ACTTTGTGTTCCCCGTATAACT 57.371 40.909 0.00 0.00 0.00 2.24
913 2297 5.526846 AGTTTCTCTGAACTTTCTGAAGCAG 59.473 40.000 0.92 0.00 36.49 4.24
915 2299 3.389329 TCTCTGAACTTTCTGAAGCAGGT 59.611 43.478 0.00 0.00 36.29 4.00
945 3877 8.225603 ACACATTCAGACTAACACAAGAAAAT 57.774 30.769 0.00 0.00 0.00 1.82
951 3912 8.142994 TCAGACTAACACAAGAAAATCTGAAC 57.857 34.615 0.00 0.00 38.63 3.18
954 3915 9.178758 AGACTAACACAAGAAAATCTGAACTTT 57.821 29.630 0.00 0.00 0.00 2.66
973 3934 5.679601 ACTTTCTTCTTATCCATCCAGAGC 58.320 41.667 0.00 0.00 0.00 4.09
975 3936 2.630098 TCTTCTTATCCATCCAGAGCCG 59.370 50.000 0.00 0.00 0.00 5.52
976 3937 2.381752 TCTTATCCATCCAGAGCCGA 57.618 50.000 0.00 0.00 0.00 5.54
978 3939 0.681733 TTATCCATCCAGAGCCGAGC 59.318 55.000 0.00 0.00 0.00 5.03
979 3940 1.188219 TATCCATCCAGAGCCGAGCC 61.188 60.000 0.00 0.00 0.00 4.70
980 3941 3.473647 CCATCCAGAGCCGAGCCA 61.474 66.667 0.00 0.00 0.00 4.75
982 3943 3.474570 ATCCAGAGCCGAGCCACC 61.475 66.667 0.00 0.00 0.00 4.61
985 3946 3.790437 CAGAGCCGAGCCACCCAT 61.790 66.667 0.00 0.00 0.00 4.00
986 3947 3.474570 AGAGCCGAGCCACCCATC 61.475 66.667 0.00 0.00 0.00 3.51
987 3948 4.554036 GAGCCGAGCCACCCATCC 62.554 72.222 0.00 0.00 0.00 3.51
989 3950 3.161450 GCCGAGCCACCCATCCTA 61.161 66.667 0.00 0.00 0.00 2.94
990 3951 2.822399 CCGAGCCACCCATCCTAC 59.178 66.667 0.00 0.00 0.00 3.18
991 3952 2.808206 CCGAGCCACCCATCCTACC 61.808 68.421 0.00 0.00 0.00 3.18
992 3953 1.762460 CGAGCCACCCATCCTACCT 60.762 63.158 0.00 0.00 0.00 3.08
993 3954 1.832912 GAGCCACCCATCCTACCTG 59.167 63.158 0.00 0.00 0.00 4.00
994 3955 0.983378 GAGCCACCCATCCTACCTGT 60.983 60.000 0.00 0.00 0.00 4.00
995 3956 0.550147 AGCCACCCATCCTACCTGTT 60.550 55.000 0.00 0.00 0.00 3.16
996 3957 0.107165 GCCACCCATCCTACCTGTTC 60.107 60.000 0.00 0.00 0.00 3.18
997 3958 0.546598 CCACCCATCCTACCTGTTCC 59.453 60.000 0.00 0.00 0.00 3.62
998 3959 0.178068 CACCCATCCTACCTGTTCCG 59.822 60.000 0.00 0.00 0.00 4.30
999 3960 0.981277 ACCCATCCTACCTGTTCCGG 60.981 60.000 0.00 0.00 0.00 5.14
1000 3961 1.146263 CCATCCTACCTGTTCCGGC 59.854 63.158 0.00 0.00 0.00 6.13
1001 3962 1.227263 CATCCTACCTGTTCCGGCG 60.227 63.158 0.00 0.00 0.00 6.46
1004 3965 4.077184 CTACCTGTTCCGGCGCCA 62.077 66.667 28.98 4.32 0.00 5.69
1016 3977 3.880846 GCGCCAATTGAGCCGAGG 61.881 66.667 7.12 0.00 0.00 4.63
1041 4002 2.753043 AATGGAAGCTGCTGCCGG 60.753 61.111 21.57 0.00 40.80 6.13
1122 4104 2.534396 CCAGCAACCCCTACCACCA 61.534 63.158 0.00 0.00 0.00 4.17
1123 4105 1.691219 CAGCAACCCCTACCACCAT 59.309 57.895 0.00 0.00 0.00 3.55
1124 4106 0.039618 CAGCAACCCCTACCACCATT 59.960 55.000 0.00 0.00 0.00 3.16
1125 4107 1.283613 CAGCAACCCCTACCACCATTA 59.716 52.381 0.00 0.00 0.00 1.90
1126 4108 2.091885 CAGCAACCCCTACCACCATTAT 60.092 50.000 0.00 0.00 0.00 1.28
1127 4109 2.174854 AGCAACCCCTACCACCATTATC 59.825 50.000 0.00 0.00 0.00 1.75
1128 4110 2.751816 GCAACCCCTACCACCATTATCC 60.752 54.545 0.00 0.00 0.00 2.59
1129 4111 1.829138 ACCCCTACCACCATTATCCC 58.171 55.000 0.00 0.00 0.00 3.85
1130 4112 1.073098 CCCCTACCACCATTATCCCC 58.927 60.000 0.00 0.00 0.00 4.81
1131 4113 1.700907 CCCCTACCACCATTATCCCCA 60.701 57.143 0.00 0.00 0.00 4.96
1132 4114 1.705186 CCCTACCACCATTATCCCCAG 59.295 57.143 0.00 0.00 0.00 4.45
1133 4115 1.073923 CCTACCACCATTATCCCCAGC 59.926 57.143 0.00 0.00 0.00 4.85
1134 4116 1.073923 CTACCACCATTATCCCCAGCC 59.926 57.143 0.00 0.00 0.00 4.85
1135 4117 1.153756 CCACCATTATCCCCAGCCC 59.846 63.158 0.00 0.00 0.00 5.19
1136 4118 1.153756 CACCATTATCCCCAGCCCC 59.846 63.158 0.00 0.00 0.00 5.80
1137 4119 1.309549 ACCATTATCCCCAGCCCCA 60.310 57.895 0.00 0.00 0.00 4.96
1138 4120 1.153756 CCATTATCCCCAGCCCCAC 59.846 63.158 0.00 0.00 0.00 4.61
1139 4121 1.153756 CATTATCCCCAGCCCCACC 59.846 63.158 0.00 0.00 0.00 4.61
1140 4122 1.309549 ATTATCCCCAGCCCCACCA 60.310 57.895 0.00 0.00 0.00 4.17
1141 4123 1.655114 ATTATCCCCAGCCCCACCAC 61.655 60.000 0.00 0.00 0.00 4.16
1167 4149 0.253327 ATTTTCTCCGGCCTCCTCAC 59.747 55.000 0.00 0.00 0.00 3.51
1188 4176 2.025767 CTCAGTCTCAGGGGATGCGG 62.026 65.000 0.00 0.00 0.00 5.69
1609 4597 1.788586 GCTGTTCGACGAAAAGCGC 60.789 57.895 31.02 15.19 42.03 5.92
1613 4601 2.950172 TTCGACGAAAAGCGCCAGC 61.950 57.895 8.05 0.00 46.04 4.85
1853 4841 2.606213 TGGAGGCCGTGTCCATGA 60.606 61.111 8.12 0.00 39.28 3.07
1855 4843 0.689412 TGGAGGCCGTGTCCATGATA 60.689 55.000 8.12 0.00 39.28 2.15
1870 4858 1.589196 GATACAGACGCACCGGCTC 60.589 63.158 0.00 0.00 44.38 4.70
2191 5179 3.489180 CAAGAGCTTGCTCAATTCCTG 57.511 47.619 22.44 7.60 33.45 3.86
2234 5222 4.344865 GCCCCGGTCCTTTGCTCA 62.345 66.667 0.00 0.00 0.00 4.26
2282 5270 4.015764 TGCTGCCAGCTTCAAATGTAATA 58.984 39.130 18.96 0.00 42.97 0.98
2310 5298 0.857287 CCATCATCGTCAGACATGCG 59.143 55.000 0.41 0.00 0.00 4.73
2314 5302 1.079197 ATCGTCAGACATGCGGCAA 60.079 52.632 6.82 0.00 0.00 4.52
2336 5324 0.239347 CACTGCCAAAGAAGCTTCGG 59.761 55.000 20.43 16.37 0.00 4.30
2437 5425 2.358737 GGGCAACTGGACCGACAG 60.359 66.667 0.00 0.00 44.03 3.51
2446 5434 0.596577 TGGACCGACAGTTCTTCTCG 59.403 55.000 0.00 0.00 0.00 4.04
2467 5455 3.181482 CGCATATCTGGAACACTCTGAGT 60.181 47.826 4.06 4.06 0.00 3.41
2539 5527 2.409715 CGCATCACAGGTATATCTTGCG 59.590 50.000 13.66 13.66 44.39 4.85
2549 5537 6.183360 ACAGGTATATCTTGCGAATCAGTCTT 60.183 38.462 0.00 0.00 0.00 3.01
2654 5642 1.825474 TCAATCAGAAGACGACCTCCC 59.175 52.381 0.00 0.00 0.00 4.30
2674 5662 2.350522 CTGTTTCAGAAGGATGTCGGG 58.649 52.381 0.00 0.00 32.44 5.14
2743 5731 2.616960 GATGGTTACACTGTCGATGCA 58.383 47.619 0.00 0.00 0.00 3.96
2887 5875 2.560105 AGGCTGTCCATTTTCTTCTTGC 59.440 45.455 0.00 0.00 33.74 4.01
2898 5886 6.015095 CCATTTTCTTCTTGCTTCCCTACTTT 60.015 38.462 0.00 0.00 0.00 2.66
2899 5887 7.436933 CATTTTCTTCTTGCTTCCCTACTTTT 58.563 34.615 0.00 0.00 0.00 2.27
2900 5888 6.391227 TTTCTTCTTGCTTCCCTACTTTTG 57.609 37.500 0.00 0.00 0.00 2.44
2901 5889 5.304686 TCTTCTTGCTTCCCTACTTTTGA 57.695 39.130 0.00 0.00 0.00 2.69
2902 5890 5.880901 TCTTCTTGCTTCCCTACTTTTGAT 58.119 37.500 0.00 0.00 0.00 2.57
2904 5892 6.431234 TCTTCTTGCTTCCCTACTTTTGATTC 59.569 38.462 0.00 0.00 0.00 2.52
2905 5893 4.695455 TCTTGCTTCCCTACTTTTGATTCG 59.305 41.667 0.00 0.00 0.00 3.34
3162 6150 5.426689 TGTCTTCCAGAACTTCATATGCT 57.573 39.130 0.00 0.00 0.00 3.79
3166 6154 4.322080 TCCAGAACTTCATATGCTACCG 57.678 45.455 0.00 0.00 0.00 4.02
3176 6164 5.791336 TCATATGCTACCGTCTCAAATCT 57.209 39.130 0.00 0.00 0.00 2.40
3186 6174 5.411781 ACCGTCTCAAATCTATGTTCTGTC 58.588 41.667 0.00 0.00 0.00 3.51
3262 6250 4.335315 TCACATGAACTTGTTGGACAGAAC 59.665 41.667 0.00 0.00 0.00 3.01
3268 6256 6.155827 TGAACTTGTTGGACAGAACAAAAAG 58.844 36.000 6.55 6.55 43.48 2.27
3307 6295 9.844790 CATTTTGTGCTCTCATATGAACTTTAA 57.155 29.630 6.90 0.00 0.00 1.52
3315 6304 8.555361 GCTCTCATATGAACTTTAAGGACATTC 58.445 37.037 6.90 0.27 0.00 2.67
3338 6327 4.999950 CAGTAGCTTGACTTGGATTTCAGT 59.000 41.667 0.00 0.00 0.00 3.41
3429 6418 3.243401 GCGTTTGTTTTCCCTGACAATCT 60.243 43.478 0.00 0.00 35.85 2.40
3438 6427 4.974645 TCCCTGACAATCTTTAGTGTGT 57.025 40.909 0.00 0.00 33.21 3.72
3439 6428 4.894784 TCCCTGACAATCTTTAGTGTGTC 58.105 43.478 0.00 0.00 40.64 3.67
3440 6429 4.346709 TCCCTGACAATCTTTAGTGTGTCA 59.653 41.667 13.58 13.58 46.04 3.58
3441 6430 5.013079 TCCCTGACAATCTTTAGTGTGTCAT 59.987 40.000 14.23 0.00 46.73 3.06
3482 6471 3.623863 GTCGTTTCGCAAAGGAAATTCA 58.376 40.909 0.00 0.00 38.12 2.57
3483 6472 3.420904 GTCGTTTCGCAAAGGAAATTCAC 59.579 43.478 0.00 0.00 38.12 3.18
3492 6481 4.279420 GCAAAGGAAATTCACAACTCCTCT 59.721 41.667 0.00 0.00 37.31 3.69
3499 6490 1.617322 TCACAACTCCTCTAGCGTGT 58.383 50.000 0.00 0.00 34.82 4.49
3523 6514 9.645128 TGTCATATTTTCCAGGATTTCATATGT 57.355 29.630 1.90 0.00 0.00 2.29
3525 6516 9.002600 TCATATTTTCCAGGATTTCATATGTCG 57.997 33.333 1.90 0.00 0.00 4.35
3672 6672 6.849502 CATTTTGTGCACTCATATGAACTCT 58.150 36.000 19.41 0.00 0.00 3.24
3690 6691 3.138283 ACTCTGGACATTTGACCCTTGAA 59.862 43.478 0.00 0.00 0.00 2.69
3699 6700 6.840527 ACATTTGACCCTTGAATTGGATTTT 58.159 32.000 0.00 0.00 0.00 1.82
3901 6902 0.960861 TGCCAACACGAACAACACCA 60.961 50.000 0.00 0.00 0.00 4.17
3918 6925 3.068590 ACACCACTGGAATTTCAAGCAAG 59.931 43.478 0.71 0.00 0.00 4.01
3950 6957 2.888111 GCTTAGGGCTTTGCAGGC 59.112 61.111 5.35 5.35 45.20 4.85
3976 6983 1.081108 TTTATTGGGCGCAACGTGC 60.081 52.632 19.39 0.00 40.69 5.34
3998 7005 1.795768 CTTGAAGGCTTAGCGTGTCA 58.204 50.000 0.00 4.22 0.00 3.58
4011 7019 1.462791 CGTGTCAAAAAGCCGTTGTC 58.537 50.000 0.00 0.00 0.00 3.18
4159 7201 5.046231 TCAGGTTGGCATATGTTGTACTGTA 60.046 40.000 4.29 0.00 0.00 2.74
4179 7221 8.759481 ACTGTATGAGAACTCTTGATGATAGA 57.241 34.615 3.51 0.00 0.00 1.98
4241 7460 4.639755 TGTGCATTGAGAACTGAAAAGTGA 59.360 37.500 0.00 0.00 0.00 3.41
4288 7507 5.312895 TCTGCCTGAAGTGTAAAATGCTTA 58.687 37.500 0.00 0.00 0.00 3.09
4382 7615 0.043183 TCATCTCAGCCCCAGAAGGA 59.957 55.000 0.00 0.00 38.24 3.36
4393 7626 1.065854 CCCAGAAGGAAGCCAGTACAG 60.066 57.143 0.00 0.00 38.24 2.74
4492 7725 2.104451 CCTCTGCATAATGAGCTCCACT 59.896 50.000 12.15 0.00 0.00 4.00
4597 7830 0.748450 TGTCGAAAACGGTGAGACCT 59.252 50.000 0.00 0.00 35.66 3.85
4712 7945 6.291377 TGAAGATATACTCCTGCAACCATTC 58.709 40.000 0.00 0.00 0.00 2.67
4718 7951 1.747355 CTCCTGCAACCATTCCATCAC 59.253 52.381 0.00 0.00 0.00 3.06
4719 7952 1.355381 TCCTGCAACCATTCCATCACT 59.645 47.619 0.00 0.00 0.00 3.41
4732 7965 6.071784 CCATTCCATCACTCTCACAAAATCAA 60.072 38.462 0.00 0.00 0.00 2.57
4774 8007 8.571461 AATTGTTTAGCTTCTCATCATCAAGA 57.429 30.769 0.00 0.00 0.00 3.02
4775 8008 7.606858 TTGTTTAGCTTCTCATCATCAAGAG 57.393 36.000 0.00 0.00 0.00 2.85
4776 8009 6.705302 TGTTTAGCTTCTCATCATCAAGAGT 58.295 36.000 0.00 0.00 33.63 3.24
4777 8010 7.164122 TGTTTAGCTTCTCATCATCAAGAGTT 58.836 34.615 0.00 0.00 33.63 3.01
4778 8011 8.314021 TGTTTAGCTTCTCATCATCAAGAGTTA 58.686 33.333 0.00 0.00 33.63 2.24
4779 8012 9.323985 GTTTAGCTTCTCATCATCAAGAGTTAT 57.676 33.333 0.00 0.00 33.63 1.89
4781 8014 9.973450 TTAGCTTCTCATCATCAAGAGTTATAC 57.027 33.333 0.00 0.00 33.63 1.47
4782 8015 8.248904 AGCTTCTCATCATCAAGAGTTATACT 57.751 34.615 0.00 0.00 33.63 2.12
4783 8016 8.143193 AGCTTCTCATCATCAAGAGTTATACTG 58.857 37.037 0.00 0.00 33.63 2.74
4784 8017 7.095691 GCTTCTCATCATCAAGAGTTATACTGC 60.096 40.741 0.00 0.00 33.63 4.40
4814 8049 6.455647 CATCCAAGTTAAGTGTACTGACTGA 58.544 40.000 0.00 0.00 0.00 3.41
4944 8179 1.278985 TCTTCCGGTCAACATCTGCAT 59.721 47.619 0.00 0.00 0.00 3.96
4945 8180 1.667724 CTTCCGGTCAACATCTGCATC 59.332 52.381 0.00 0.00 0.00 3.91
4946 8181 0.460109 TCCGGTCAACATCTGCATCG 60.460 55.000 0.00 0.00 0.00 3.84
4947 8182 0.460109 CCGGTCAACATCTGCATCGA 60.460 55.000 0.00 0.00 0.00 3.59
4948 8183 0.647410 CGGTCAACATCTGCATCGAC 59.353 55.000 0.00 0.00 0.00 4.20
4949 8184 1.725641 GGTCAACATCTGCATCGACA 58.274 50.000 0.00 0.00 0.00 4.35
4950 8185 2.076100 GGTCAACATCTGCATCGACAA 58.924 47.619 0.00 0.00 0.00 3.18
4951 8186 2.094894 GGTCAACATCTGCATCGACAAG 59.905 50.000 0.00 0.00 0.00 3.16
4952 8187 1.733912 TCAACATCTGCATCGACAAGC 59.266 47.619 0.00 0.00 0.00 4.01
4963 8198 2.078849 TCGACAAGCGACATGTCAAT 57.921 45.000 24.93 10.15 45.90 2.57
4964 8199 2.412870 TCGACAAGCGACATGTCAATT 58.587 42.857 24.93 15.42 45.90 2.32
4993 8228 5.708948 TGTTTTCTAATACATGGCAACTGC 58.291 37.500 0.00 0.00 41.14 4.40
4997 8232 6.925610 TTCTAATACATGGCAACTGCTAAG 57.074 37.500 1.06 0.00 41.70 2.18
5003 8238 3.881688 ACATGGCAACTGCTAAGATCATC 59.118 43.478 1.06 0.00 41.70 2.92
5006 8241 3.282021 GGCAACTGCTAAGATCATCCAA 58.718 45.455 1.06 0.00 41.70 3.53
5007 8242 3.065925 GGCAACTGCTAAGATCATCCAAC 59.934 47.826 1.06 0.00 41.70 3.77
5008 8243 3.065925 GCAACTGCTAAGATCATCCAACC 59.934 47.826 0.00 0.00 38.21 3.77
5036 8283 5.701290 GGTGATACATCTATGCAACCTAACC 59.299 44.000 0.00 0.00 0.00 2.85
5049 8296 5.423931 TGCAACCTAACCATCTGTAGTCATA 59.576 40.000 0.00 0.00 0.00 2.15
5053 8300 8.638873 CAACCTAACCATCTGTAGTCATACATA 58.361 37.037 0.00 0.00 41.05 2.29
5059 8306 7.235079 ACCATCTGTAGTCATACATAGCTACT 58.765 38.462 0.00 0.00 41.05 2.57
5082 8329 8.806177 ACTTTTTAATTGAACGGTTACCAATC 57.194 30.769 1.13 0.00 30.93 2.67
5090 8337 3.053831 ACGGTTACCAATCAAGACCAG 57.946 47.619 1.13 0.00 0.00 4.00
5095 8342 2.568623 ACCAATCAAGACCAGGTGAC 57.431 50.000 0.00 0.00 0.00 3.67
5098 8345 3.181429 ACCAATCAAGACCAGGTGACAAT 60.181 43.478 0.00 0.00 0.00 2.71
5100 8347 4.321452 CCAATCAAGACCAGGTGACAATTG 60.321 45.833 3.24 3.24 0.00 2.32
5111 8358 7.386059 ACCAGGTGACAATTGAATTTAAATCC 58.614 34.615 13.59 0.00 0.00 3.01
5115 8362 7.675619 AGGTGACAATTGAATTTAAATCCCTCT 59.324 33.333 13.59 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.713553 TGACACTGATTGTTGGTGTATGT 58.286 39.130 0.00 0.00 43.08 2.29
1 2 4.756642 ACTGACACTGATTGTTGGTGTATG 59.243 41.667 0.00 0.00 43.08 2.39
2 3 4.973168 ACTGACACTGATTGTTGGTGTAT 58.027 39.130 0.00 0.00 43.08 2.29
3 4 4.415881 ACTGACACTGATTGTTGGTGTA 57.584 40.909 0.00 0.00 43.08 2.90
4 5 3.281727 ACTGACACTGATTGTTGGTGT 57.718 42.857 0.00 0.00 45.26 4.16
5 6 5.469760 TGATTACTGACACTGATTGTTGGTG 59.530 40.000 0.00 0.00 39.17 4.17
6 7 5.620206 TGATTACTGACACTGATTGTTGGT 58.380 37.500 0.00 0.00 39.17 3.67
7 8 6.372381 TGATGATTACTGACACTGATTGTTGG 59.628 38.462 0.00 0.00 39.17 3.77
8 9 7.118825 ACTGATGATTACTGACACTGATTGTTG 59.881 37.037 0.00 0.00 39.17 3.33
9 10 7.118825 CACTGATGATTACTGACACTGATTGTT 59.881 37.037 0.00 0.00 39.17 2.83
10 11 6.592994 CACTGATGATTACTGACACTGATTGT 59.407 38.462 0.00 0.00 43.10 2.71
11 12 6.815142 TCACTGATGATTACTGACACTGATTG 59.185 38.462 0.00 0.00 0.00 2.67
12 13 6.939622 TCACTGATGATTACTGACACTGATT 58.060 36.000 0.00 0.00 0.00 2.57
13 14 6.535963 TCACTGATGATTACTGACACTGAT 57.464 37.500 0.00 0.00 0.00 2.90
14 15 5.982890 TCACTGATGATTACTGACACTGA 57.017 39.130 0.00 0.00 0.00 3.41
15 16 6.456584 GCATTCACTGATGATTACTGACACTG 60.457 42.308 0.00 0.00 33.85 3.66
16 17 5.583854 GCATTCACTGATGATTACTGACACT 59.416 40.000 0.00 0.00 33.85 3.55
17 18 5.583854 AGCATTCACTGATGATTACTGACAC 59.416 40.000 0.00 0.00 33.85 3.67
18 19 5.737860 AGCATTCACTGATGATTACTGACA 58.262 37.500 0.00 0.00 33.85 3.58
19 20 6.674694 AAGCATTCACTGATGATTACTGAC 57.325 37.500 0.00 0.00 34.18 3.51
20 21 7.391275 TGAAAAGCATTCACTGATGATTACTGA 59.609 33.333 1.23 0.00 34.81 3.41
21 22 7.532571 TGAAAAGCATTCACTGATGATTACTG 58.467 34.615 1.23 0.00 34.81 2.74
22 23 7.692460 TGAAAAGCATTCACTGATGATTACT 57.308 32.000 1.23 0.00 34.81 2.24
23 24 8.746922 TTTGAAAAGCATTCACTGATGATTAC 57.253 30.769 4.62 0.00 34.81 1.89
25 26 9.362539 GTATTTGAAAAGCATTCACTGATGATT 57.637 29.630 4.62 0.00 37.24 2.57
26 27 8.525316 TGTATTTGAAAAGCATTCACTGATGAT 58.475 29.630 4.62 0.00 33.85 2.45
27 28 7.884257 TGTATTTGAAAAGCATTCACTGATGA 58.116 30.769 4.62 0.00 0.00 2.92
28 29 7.274904 CCTGTATTTGAAAAGCATTCACTGATG 59.725 37.037 4.62 0.00 0.00 3.07
29 30 7.318141 CCTGTATTTGAAAAGCATTCACTGAT 58.682 34.615 4.62 3.46 0.00 2.90
30 31 6.294675 CCCTGTATTTGAAAAGCATTCACTGA 60.295 38.462 4.62 0.00 0.00 3.41
31 32 5.865552 CCCTGTATTTGAAAAGCATTCACTG 59.134 40.000 4.62 0.00 0.00 3.66
32 33 5.774690 TCCCTGTATTTGAAAAGCATTCACT 59.225 36.000 4.62 0.00 0.00 3.41
33 34 6.024552 TCCCTGTATTTGAAAAGCATTCAC 57.975 37.500 4.62 0.00 0.00 3.18
34 35 6.662865 TTCCCTGTATTTGAAAAGCATTCA 57.337 33.333 1.23 1.23 0.00 2.57
35 36 7.154656 AGTTTCCCTGTATTTGAAAAGCATTC 58.845 34.615 0.00 0.00 30.47 2.67
36 37 7.066307 AGTTTCCCTGTATTTGAAAAGCATT 57.934 32.000 0.00 0.00 30.47 3.56
37 38 6.670695 AGTTTCCCTGTATTTGAAAAGCAT 57.329 33.333 0.00 0.00 30.47 3.79
38 39 6.547880 TGTAGTTTCCCTGTATTTGAAAAGCA 59.452 34.615 0.00 0.00 30.47 3.91
39 40 6.977213 TGTAGTTTCCCTGTATTTGAAAAGC 58.023 36.000 0.00 0.00 30.47 3.51
40 41 7.595130 GCTTGTAGTTTCCCTGTATTTGAAAAG 59.405 37.037 0.00 0.00 30.47 2.27
41 42 7.068839 TGCTTGTAGTTTCCCTGTATTTGAAAA 59.931 33.333 0.00 0.00 30.47 2.29
42 43 6.547880 TGCTTGTAGTTTCCCTGTATTTGAAA 59.452 34.615 0.00 0.00 0.00 2.69
43 44 6.065374 TGCTTGTAGTTTCCCTGTATTTGAA 58.935 36.000 0.00 0.00 0.00 2.69
44 45 5.626142 TGCTTGTAGTTTCCCTGTATTTGA 58.374 37.500 0.00 0.00 0.00 2.69
45 46 5.957842 TGCTTGTAGTTTCCCTGTATTTG 57.042 39.130 0.00 0.00 0.00 2.32
46 47 8.644374 TTATTGCTTGTAGTTTCCCTGTATTT 57.356 30.769 0.00 0.00 0.00 1.40
47 48 8.107095 TCTTATTGCTTGTAGTTTCCCTGTATT 58.893 33.333 0.00 0.00 0.00 1.89
48 49 7.630082 TCTTATTGCTTGTAGTTTCCCTGTAT 58.370 34.615 0.00 0.00 0.00 2.29
49 50 7.011499 TCTTATTGCTTGTAGTTTCCCTGTA 57.989 36.000 0.00 0.00 0.00 2.74
50 51 5.876357 TCTTATTGCTTGTAGTTTCCCTGT 58.124 37.500 0.00 0.00 0.00 4.00
51 52 6.623767 GCTTCTTATTGCTTGTAGTTTCCCTG 60.624 42.308 0.00 0.00 0.00 4.45
52 53 5.416013 GCTTCTTATTGCTTGTAGTTTCCCT 59.584 40.000 0.00 0.00 0.00 4.20
53 54 5.183140 TGCTTCTTATTGCTTGTAGTTTCCC 59.817 40.000 0.00 0.00 0.00 3.97
54 55 6.254281 TGCTTCTTATTGCTTGTAGTTTCC 57.746 37.500 0.00 0.00 0.00 3.13
55 56 7.363431 ACTTGCTTCTTATTGCTTGTAGTTTC 58.637 34.615 0.00 0.00 0.00 2.78
56 57 7.277174 ACTTGCTTCTTATTGCTTGTAGTTT 57.723 32.000 0.00 0.00 0.00 2.66
57 58 6.884280 ACTTGCTTCTTATTGCTTGTAGTT 57.116 33.333 0.00 0.00 0.00 2.24
58 59 7.119846 CCTTACTTGCTTCTTATTGCTTGTAGT 59.880 37.037 0.00 0.00 0.00 2.73
59 60 7.414540 CCCTTACTTGCTTCTTATTGCTTGTAG 60.415 40.741 0.00 0.00 0.00 2.74
60 61 6.374333 CCCTTACTTGCTTCTTATTGCTTGTA 59.626 38.462 0.00 0.00 0.00 2.41
61 62 5.183904 CCCTTACTTGCTTCTTATTGCTTGT 59.816 40.000 0.00 0.00 0.00 3.16
62 63 5.393461 CCCCTTACTTGCTTCTTATTGCTTG 60.393 44.000 0.00 0.00 0.00 4.01
63 64 4.706962 CCCCTTACTTGCTTCTTATTGCTT 59.293 41.667 0.00 0.00 0.00 3.91
64 65 4.018415 TCCCCTTACTTGCTTCTTATTGCT 60.018 41.667 0.00 0.00 0.00 3.91
65 66 4.270008 TCCCCTTACTTGCTTCTTATTGC 58.730 43.478 0.00 0.00 0.00 3.56
66 67 6.208599 TGTTTCCCCTTACTTGCTTCTTATTG 59.791 38.462 0.00 0.00 0.00 1.90
67 68 6.208797 GTGTTTCCCCTTACTTGCTTCTTATT 59.791 38.462 0.00 0.00 0.00 1.40
68 69 5.710567 GTGTTTCCCCTTACTTGCTTCTTAT 59.289 40.000 0.00 0.00 0.00 1.73
69 70 5.067954 GTGTTTCCCCTTACTTGCTTCTTA 58.932 41.667 0.00 0.00 0.00 2.10
70 71 3.889538 GTGTTTCCCCTTACTTGCTTCTT 59.110 43.478 0.00 0.00 0.00 2.52
71 72 3.138468 AGTGTTTCCCCTTACTTGCTTCT 59.862 43.478 0.00 0.00 0.00 2.85
72 73 3.253432 CAGTGTTTCCCCTTACTTGCTTC 59.747 47.826 0.00 0.00 0.00 3.86
73 74 3.222603 CAGTGTTTCCCCTTACTTGCTT 58.777 45.455 0.00 0.00 0.00 3.91
74 75 2.489073 CCAGTGTTTCCCCTTACTTGCT 60.489 50.000 0.00 0.00 0.00 3.91
75 76 1.886542 CCAGTGTTTCCCCTTACTTGC 59.113 52.381 0.00 0.00 0.00 4.01
76 77 1.886542 GCCAGTGTTTCCCCTTACTTG 59.113 52.381 0.00 0.00 0.00 3.16
77 78 1.780919 AGCCAGTGTTTCCCCTTACTT 59.219 47.619 0.00 0.00 0.00 2.24
78 79 1.446016 AGCCAGTGTTTCCCCTTACT 58.554 50.000 0.00 0.00 0.00 2.24
79 80 1.886542 CAAGCCAGTGTTTCCCCTTAC 59.113 52.381 0.00 0.00 0.00 2.34
80 81 1.497286 ACAAGCCAGTGTTTCCCCTTA 59.503 47.619 0.00 0.00 0.00 2.69
81 82 0.261696 ACAAGCCAGTGTTTCCCCTT 59.738 50.000 0.00 0.00 0.00 3.95
82 83 0.261696 AACAAGCCAGTGTTTCCCCT 59.738 50.000 0.00 0.00 38.60 4.79
83 84 0.673985 GAACAAGCCAGTGTTTCCCC 59.326 55.000 0.15 0.00 41.78 4.81
84 85 0.673985 GGAACAAGCCAGTGTTTCCC 59.326 55.000 0.15 0.00 41.78 3.97
85 86 1.067060 GTGGAACAAGCCAGTGTTTCC 59.933 52.381 2.30 0.00 44.16 3.13
86 87 2.024414 AGTGGAACAAGCCAGTGTTTC 58.976 47.619 0.00 0.00 44.16 2.78
87 88 2.143876 AGTGGAACAAGCCAGTGTTT 57.856 45.000 0.00 0.00 44.16 2.83
88 89 2.172717 AGTAGTGGAACAAGCCAGTGTT 59.827 45.455 0.00 0.00 44.16 3.32
89 90 1.768870 AGTAGTGGAACAAGCCAGTGT 59.231 47.619 0.00 0.00 44.16 3.55
90 91 2.146342 CAGTAGTGGAACAAGCCAGTG 58.854 52.381 0.00 0.00 44.16 3.66
91 92 1.768870 ACAGTAGTGGAACAAGCCAGT 59.231 47.619 1.92 0.00 44.16 4.00
92 93 2.549754 CAACAGTAGTGGAACAAGCCAG 59.450 50.000 1.92 0.00 44.16 4.85
93 94 2.571212 CAACAGTAGTGGAACAAGCCA 58.429 47.619 1.92 0.00 44.16 4.75
94 95 1.266989 GCAACAGTAGTGGAACAAGCC 59.733 52.381 1.92 0.00 44.16 4.35
95 96 2.222027 AGCAACAGTAGTGGAACAAGC 58.778 47.619 1.92 0.00 44.16 4.01
96 97 2.476619 CGAGCAACAGTAGTGGAACAAG 59.523 50.000 1.92 0.00 44.16 3.16
97 98 2.479837 CGAGCAACAGTAGTGGAACAA 58.520 47.619 1.92 0.00 44.16 2.83
98 99 1.270094 CCGAGCAACAGTAGTGGAACA 60.270 52.381 1.92 0.00 41.43 3.18
99 100 1.000506 TCCGAGCAACAGTAGTGGAAC 59.999 52.381 1.92 0.00 0.00 3.62
100 101 1.000506 GTCCGAGCAACAGTAGTGGAA 59.999 52.381 1.92 0.00 0.00 3.53
101 102 0.601558 GTCCGAGCAACAGTAGTGGA 59.398 55.000 1.92 0.00 0.00 4.02
102 103 0.317160 TGTCCGAGCAACAGTAGTGG 59.683 55.000 1.92 0.00 0.00 4.00
103 104 2.148916 TTGTCCGAGCAACAGTAGTG 57.851 50.000 0.00 0.00 0.00 2.74
104 105 4.737855 ATATTGTCCGAGCAACAGTAGT 57.262 40.909 0.00 0.00 0.00 2.73
105 106 4.260375 GCAATATTGTCCGAGCAACAGTAG 60.260 45.833 16.61 0.00 0.00 2.57
106 107 3.621268 GCAATATTGTCCGAGCAACAGTA 59.379 43.478 16.61 0.00 0.00 2.74
107 108 2.420022 GCAATATTGTCCGAGCAACAGT 59.580 45.455 16.61 0.00 0.00 3.55
108 109 2.419673 TGCAATATTGTCCGAGCAACAG 59.580 45.455 16.61 0.00 0.00 3.16
109 110 2.431454 TGCAATATTGTCCGAGCAACA 58.569 42.857 16.61 0.43 0.00 3.33
110 111 3.485947 TTGCAATATTGTCCGAGCAAC 57.514 42.857 16.61 0.00 37.10 4.17
111 112 3.366883 GGTTTGCAATATTGTCCGAGCAA 60.367 43.478 16.61 10.36 39.86 3.91
112 113 2.163412 GGTTTGCAATATTGTCCGAGCA 59.837 45.455 16.61 4.66 0.00 4.26
113 114 2.423538 AGGTTTGCAATATTGTCCGAGC 59.576 45.455 16.61 9.88 0.00 5.03
114 115 3.689161 TGAGGTTTGCAATATTGTCCGAG 59.311 43.478 16.61 0.00 0.00 4.63
115 116 3.680490 TGAGGTTTGCAATATTGTCCGA 58.320 40.909 16.61 0.00 0.00 4.55
116 117 4.637483 ATGAGGTTTGCAATATTGTCCG 57.363 40.909 16.61 0.00 0.00 4.79
117 118 8.947055 ATTTAATGAGGTTTGCAATATTGTCC 57.053 30.769 16.61 13.12 0.00 4.02
123 124 9.420118 ACATCCTATTTAATGAGGTTTGCAATA 57.580 29.630 0.00 0.00 34.20 1.90
124 125 8.310122 ACATCCTATTTAATGAGGTTTGCAAT 57.690 30.769 0.00 0.00 34.20 3.56
125 126 7.395772 TGACATCCTATTTAATGAGGTTTGCAA 59.604 33.333 0.00 0.00 34.20 4.08
126 127 6.889177 TGACATCCTATTTAATGAGGTTTGCA 59.111 34.615 3.71 0.00 34.20 4.08
127 128 7.333528 TGACATCCTATTTAATGAGGTTTGC 57.666 36.000 3.71 0.00 34.20 3.68
128 129 8.355169 CCATGACATCCTATTTAATGAGGTTTG 58.645 37.037 0.00 5.64 34.20 2.93
129 130 7.014615 GCCATGACATCCTATTTAATGAGGTTT 59.985 37.037 0.00 0.00 34.20 3.27
130 131 6.491403 GCCATGACATCCTATTTAATGAGGTT 59.509 38.462 0.00 0.00 34.20 3.50
131 132 6.006449 GCCATGACATCCTATTTAATGAGGT 58.994 40.000 0.00 0.00 34.20 3.85
132 133 5.416952 GGCCATGACATCCTATTTAATGAGG 59.583 44.000 0.00 0.00 0.00 3.86
133 134 6.005823 TGGCCATGACATCCTATTTAATGAG 58.994 40.000 0.00 0.00 0.00 2.90
134 135 5.769662 GTGGCCATGACATCCTATTTAATGA 59.230 40.000 9.72 0.00 0.00 2.57
135 136 5.047802 GGTGGCCATGACATCCTATTTAATG 60.048 44.000 9.72 0.00 0.00 1.90
136 137 5.079643 GGTGGCCATGACATCCTATTTAAT 58.920 41.667 9.72 0.00 0.00 1.40
137 138 4.079500 TGGTGGCCATGACATCCTATTTAA 60.080 41.667 9.72 0.00 0.00 1.52
138 139 3.461458 TGGTGGCCATGACATCCTATTTA 59.539 43.478 9.72 0.00 0.00 1.40
139 140 2.244510 TGGTGGCCATGACATCCTATTT 59.755 45.455 9.72 0.00 0.00 1.40
140 141 1.852309 TGGTGGCCATGACATCCTATT 59.148 47.619 9.72 0.00 0.00 1.73
141 142 1.521764 TGGTGGCCATGACATCCTAT 58.478 50.000 9.72 0.00 0.00 2.57
142 143 1.421268 GATGGTGGCCATGACATCCTA 59.579 52.381 25.63 6.33 45.26 2.94
143 144 0.184451 GATGGTGGCCATGACATCCT 59.816 55.000 25.63 7.69 45.26 3.24
144 145 0.106569 TGATGGTGGCCATGACATCC 60.107 55.000 29.50 18.95 45.26 3.51
145 146 1.315690 CTGATGGTGGCCATGACATC 58.684 55.000 27.64 27.64 45.26 3.06
146 147 0.754217 GCTGATGGTGGCCATGACAT 60.754 55.000 9.72 14.64 45.26 3.06
147 148 1.378911 GCTGATGGTGGCCATGACA 60.379 57.895 9.72 9.72 45.26 3.58
148 149 1.378911 TGCTGATGGTGGCCATGAC 60.379 57.895 9.72 2.94 45.26 3.06
149 150 1.077285 CTGCTGATGGTGGCCATGA 60.077 57.895 9.72 0.00 45.26 3.07
150 151 2.125326 CCTGCTGATGGTGGCCATG 61.125 63.158 9.72 0.00 45.26 3.66
152 153 2.769652 GAACCTGCTGATGGTGGCCA 62.770 60.000 0.00 0.00 37.93 5.36
153 154 2.036256 AACCTGCTGATGGTGGCC 59.964 61.111 0.00 0.00 37.93 5.36
154 155 1.001641 AGAACCTGCTGATGGTGGC 60.002 57.895 0.00 0.00 37.93 5.01
155 156 0.742281 CGAGAACCTGCTGATGGTGG 60.742 60.000 0.00 0.00 37.93 4.61
156 157 0.742281 CCGAGAACCTGCTGATGGTG 60.742 60.000 0.00 0.00 37.93 4.17
157 158 0.904865 TCCGAGAACCTGCTGATGGT 60.905 55.000 0.00 0.00 39.91 3.55
158 159 0.460987 GTCCGAGAACCTGCTGATGG 60.461 60.000 0.00 0.00 0.00 3.51
159 160 0.460987 GGTCCGAGAACCTGCTGATG 60.461 60.000 0.00 0.00 36.32 3.07
160 161 1.901085 GGTCCGAGAACCTGCTGAT 59.099 57.895 0.00 0.00 36.32 2.90
161 162 3.377656 GGTCCGAGAACCTGCTGA 58.622 61.111 0.00 0.00 36.32 4.26
167 168 1.134788 CCACATGTAGGTCCGAGAACC 60.135 57.143 0.00 0.00 39.80 3.62
168 169 1.822990 TCCACATGTAGGTCCGAGAAC 59.177 52.381 0.00 0.00 0.00 3.01
169 170 2.100197 CTCCACATGTAGGTCCGAGAA 58.900 52.381 0.00 0.00 0.00 2.87
170 171 1.763968 CTCCACATGTAGGTCCGAGA 58.236 55.000 0.00 0.00 0.00 4.04
171 172 0.103208 GCTCCACATGTAGGTCCGAG 59.897 60.000 0.00 0.00 0.00 4.63
172 173 0.613572 TGCTCCACATGTAGGTCCGA 60.614 55.000 0.00 0.00 0.00 4.55
173 174 0.465705 ATGCTCCACATGTAGGTCCG 59.534 55.000 0.00 0.00 37.70 4.79
174 175 2.717639 AATGCTCCACATGTAGGTCC 57.282 50.000 0.00 0.00 39.60 4.46
175 176 2.609459 CGAAATGCTCCACATGTAGGTC 59.391 50.000 0.00 1.06 39.60 3.85
176 177 2.236146 TCGAAATGCTCCACATGTAGGT 59.764 45.455 0.00 0.00 39.60 3.08
177 178 2.905075 TCGAAATGCTCCACATGTAGG 58.095 47.619 0.00 2.79 39.60 3.18
178 179 4.260907 CCATTCGAAATGCTCCACATGTAG 60.261 45.833 0.00 0.00 39.60 2.74
179 180 3.627123 CCATTCGAAATGCTCCACATGTA 59.373 43.478 0.00 0.00 39.60 2.29
180 181 2.424601 CCATTCGAAATGCTCCACATGT 59.575 45.455 0.00 0.00 39.60 3.21
181 182 2.797087 GCCATTCGAAATGCTCCACATG 60.797 50.000 0.00 0.00 39.60 3.21
182 183 1.406539 GCCATTCGAAATGCTCCACAT 59.593 47.619 0.00 0.00 42.30 3.21
183 184 0.810648 GCCATTCGAAATGCTCCACA 59.189 50.000 0.00 0.00 0.00 4.17
184 185 1.098050 AGCCATTCGAAATGCTCCAC 58.902 50.000 16.43 0.00 0.00 4.02
185 186 1.097232 CAGCCATTCGAAATGCTCCA 58.903 50.000 18.59 0.00 30.08 3.86
186 187 1.382522 TCAGCCATTCGAAATGCTCC 58.617 50.000 18.59 0.00 30.08 4.70
187 188 2.421424 AGTTCAGCCATTCGAAATGCTC 59.579 45.455 18.59 10.29 30.08 4.26
188 189 2.421424 GAGTTCAGCCATTCGAAATGCT 59.579 45.455 16.43 16.43 33.52 3.79
189 190 2.162208 TGAGTTCAGCCATTCGAAATGC 59.838 45.455 0.00 8.11 0.00 3.56
190 191 4.012319 CTGAGTTCAGCCATTCGAAATG 57.988 45.455 0.00 1.20 37.15 2.32
202 203 3.693085 AGCACAATATTGGCTGAGTTCAG 59.307 43.478 22.71 4.77 46.40 3.02
203 204 3.689347 AGCACAATATTGGCTGAGTTCA 58.311 40.909 22.71 0.00 34.77 3.18
204 205 3.065925 GGAGCACAATATTGGCTGAGTTC 59.934 47.826 26.23 15.93 35.71 3.01
205 206 3.019564 GGAGCACAATATTGGCTGAGTT 58.980 45.455 26.23 10.23 35.71 3.01
206 207 2.240667 AGGAGCACAATATTGGCTGAGT 59.759 45.455 26.23 13.44 35.71 3.41
207 208 2.877168 GAGGAGCACAATATTGGCTGAG 59.123 50.000 26.23 11.12 35.71 3.35
208 209 2.421952 GGAGGAGCACAATATTGGCTGA 60.422 50.000 26.23 0.00 35.71 4.26
209 210 1.952296 GGAGGAGCACAATATTGGCTG 59.048 52.381 26.23 15.77 35.71 4.85
210 211 1.133668 GGGAGGAGCACAATATTGGCT 60.134 52.381 23.24 23.24 37.39 4.75
211 212 1.133668 AGGGAGGAGCACAATATTGGC 60.134 52.381 19.37 17.80 0.00 4.52
212 213 4.103153 TCTTAGGGAGGAGCACAATATTGG 59.897 45.833 19.37 9.51 0.00 3.16
213 214 5.296151 TCTTAGGGAGGAGCACAATATTG 57.704 43.478 14.01 14.01 0.00 1.90
214 215 5.975988 TTCTTAGGGAGGAGCACAATATT 57.024 39.130 0.00 0.00 0.00 1.28
215 216 5.667626 TCTTTCTTAGGGAGGAGCACAATAT 59.332 40.000 0.00 0.00 0.00 1.28
216 217 5.030147 TCTTTCTTAGGGAGGAGCACAATA 58.970 41.667 0.00 0.00 0.00 1.90
217 218 3.846588 TCTTTCTTAGGGAGGAGCACAAT 59.153 43.478 0.00 0.00 0.00 2.71
218 219 3.248024 TCTTTCTTAGGGAGGAGCACAA 58.752 45.455 0.00 0.00 0.00 3.33
240 241 0.668535 CGATGATCTCGTAGGCACCA 59.331 55.000 0.00 0.00 42.56 4.17
285 286 1.826327 CCGTAATCTTTGCAATGGCG 58.174 50.000 11.99 10.90 45.35 5.69
301 302 3.284449 GGCCAACAGTTTCGCCGT 61.284 61.111 0.00 0.00 0.00 5.68
302 303 2.625823 ATGGCCAACAGTTTCGCCG 61.626 57.895 10.96 0.00 44.71 6.46
306 307 4.298332 CAAGTTACATGGCCAACAGTTTC 58.702 43.478 10.96 6.01 0.00 2.78
317 318 1.271871 TGTGAGGGGCAAGTTACATGG 60.272 52.381 0.00 0.00 0.00 3.66
338 339 2.227757 TTGGGAATGAGGGCGTCCA 61.228 57.895 9.71 0.00 34.83 4.02
339 340 1.749258 GTTGGGAATGAGGGCGTCC 60.749 63.158 0.00 0.00 0.00 4.79
374 375 4.736126 TCATGGATGCTTCGAGTCTTAA 57.264 40.909 0.00 0.00 0.00 1.85
457 458 7.309438 GCCTTCCTTATGTCAAACTTGAGAAAT 60.309 37.037 0.00 0.00 37.98 2.17
478 479 1.446272 CACGGAGTCGAAGGCCTTC 60.446 63.158 32.12 32.12 41.61 3.46
482 483 3.112709 GTGCACGGAGTCGAAGGC 61.113 66.667 0.00 0.00 41.61 4.35
493 494 0.532573 AGACATACTCCCAGTGCACG 59.467 55.000 12.01 6.45 0.00 5.34
522 523 5.276678 CGACGAAACAGAACAATACTGTGTT 60.277 40.000 0.00 0.00 46.01 3.32
523 524 4.208460 CGACGAAACAGAACAATACTGTGT 59.792 41.667 0.00 0.00 46.01 3.72
526 527 5.444613 CCATCGACGAAACAGAACAATACTG 60.445 44.000 0.00 0.00 40.68 2.74
527 528 4.625742 CCATCGACGAAACAGAACAATACT 59.374 41.667 0.00 0.00 0.00 2.12
529 530 4.562082 ACCATCGACGAAACAGAACAATA 58.438 39.130 0.00 0.00 0.00 1.90
530 531 3.399330 ACCATCGACGAAACAGAACAAT 58.601 40.909 0.00 0.00 0.00 2.71
531 532 2.828877 ACCATCGACGAAACAGAACAA 58.171 42.857 0.00 0.00 0.00 2.83
532 533 2.519377 ACCATCGACGAAACAGAACA 57.481 45.000 0.00 0.00 0.00 3.18
534 535 3.928727 AGTACCATCGACGAAACAGAA 57.071 42.857 0.00 0.00 0.00 3.02
535 536 3.928727 AAGTACCATCGACGAAACAGA 57.071 42.857 0.00 0.00 0.00 3.41
536 537 4.985044 AAAAGTACCATCGACGAAACAG 57.015 40.909 0.00 0.00 0.00 3.16
567 568 9.912634 GAGGAACAAAAGATCAATCACATAAAA 57.087 29.630 0.00 0.00 0.00 1.52
570 571 7.665145 TGTGAGGAACAAAAGATCAATCACATA 59.335 33.333 0.00 0.00 38.14 2.29
571 572 6.491062 TGTGAGGAACAAAAGATCAATCACAT 59.509 34.615 0.00 0.00 38.14 3.21
572 573 5.827267 TGTGAGGAACAAAAGATCAATCACA 59.173 36.000 0.00 0.00 39.46 3.58
573 574 6.317789 TGTGAGGAACAAAAGATCAATCAC 57.682 37.500 0.00 0.00 35.24 3.06
574 575 8.812513 ATATGTGAGGAACAAAAGATCAATCA 57.187 30.769 0.00 0.00 43.61 2.57
601 602 8.319057 ACAGAGTGGGTACTTATTATTGATCA 57.681 34.615 0.00 0.00 37.25 2.92
636 637 8.877195 GGATGGTGGGAGTACTAAATAATCTTA 58.123 37.037 0.00 0.00 0.00 2.10
637 638 7.472945 CGGATGGTGGGAGTACTAAATAATCTT 60.473 40.741 0.00 0.00 0.00 2.40
638 639 6.014499 CGGATGGTGGGAGTACTAAATAATCT 60.014 42.308 0.00 0.00 0.00 2.40
639 640 6.014840 TCGGATGGTGGGAGTACTAAATAATC 60.015 42.308 0.00 0.00 0.00 1.75
640 641 5.842328 TCGGATGGTGGGAGTACTAAATAAT 59.158 40.000 0.00 0.00 0.00 1.28
641 642 5.210430 TCGGATGGTGGGAGTACTAAATAA 58.790 41.667 0.00 0.00 0.00 1.40
642 643 4.806892 TCGGATGGTGGGAGTACTAAATA 58.193 43.478 0.00 0.00 0.00 1.40
643 644 3.649843 TCGGATGGTGGGAGTACTAAAT 58.350 45.455 0.00 0.00 0.00 1.40
647 774 1.946984 TTTCGGATGGTGGGAGTACT 58.053 50.000 0.00 0.00 0.00 2.73
652 779 3.009695 ACAAGTATTTTCGGATGGTGGGA 59.990 43.478 0.00 0.00 0.00 4.37
655 782 5.818136 ATGACAAGTATTTTCGGATGGTG 57.182 39.130 0.00 0.00 0.00 4.17
657 784 9.801873 ATTTTAATGACAAGTATTTTCGGATGG 57.198 29.630 0.00 0.00 0.00 3.51
661 788 9.801873 ATCCATTTTAATGACAAGTATTTTCGG 57.198 29.630 4.07 0.00 38.70 4.30
691 818 9.233649 CGTATTCTAGTTCTAGATACATCCCTT 57.766 37.037 9.88 0.00 0.00 3.95
693 820 8.564509 ACGTATTCTAGTTCTAGATACATCCC 57.435 38.462 9.88 0.00 0.00 3.85
694 821 9.439500 AGACGTATTCTAGTTCTAGATACATCC 57.561 37.037 9.88 7.14 30.17 3.51
735 862 9.865321 CTGGAAATACTTGTCATCAAAATGAAT 57.135 29.630 0.00 0.00 43.42 2.57
736 863 9.076781 TCTGGAAATACTTGTCATCAAAATGAA 57.923 29.630 0.00 0.00 43.42 2.57
737 864 8.514594 GTCTGGAAATACTTGTCATCAAAATGA 58.485 33.333 0.00 0.00 39.63 2.57
738 865 7.482743 CGTCTGGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
739 866 7.362056 CCGTCTGGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
740 867 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
741 868 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
747 874 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
754 881 2.544844 TACTCCCTCCGTCTGGAAAT 57.455 50.000 0.00 0.00 45.87 2.17
755 882 2.544844 ATACTCCCTCCGTCTGGAAA 57.455 50.000 0.00 0.00 45.87 3.13
756 883 2.544844 AATACTCCCTCCGTCTGGAA 57.455 50.000 0.00 0.00 45.87 3.53
757 884 2.544844 AAATACTCCCTCCGTCTGGA 57.455 50.000 0.00 0.00 43.88 3.86
759 886 4.401519 TCTGTAAAATACTCCCTCCGTCTG 59.598 45.833 0.00 0.00 0.00 3.51
760 887 4.401837 GTCTGTAAAATACTCCCTCCGTCT 59.598 45.833 0.00 0.00 0.00 4.18
761 888 4.680702 GTCTGTAAAATACTCCCTCCGTC 58.319 47.826 0.00 0.00 0.00 4.79
762 889 3.129988 CGTCTGTAAAATACTCCCTCCGT 59.870 47.826 0.00 0.00 0.00 4.69
764 891 4.996788 TCGTCTGTAAAATACTCCCTCC 57.003 45.455 0.00 0.00 0.00 4.30
765 892 7.714703 AGTATTCGTCTGTAAAATACTCCCTC 58.285 38.462 0.00 0.00 40.46 4.30
766 893 7.657023 AGTATTCGTCTGTAAAATACTCCCT 57.343 36.000 0.00 0.00 40.46 4.20
767 894 8.601476 CAAAGTATTCGTCTGTAAAATACTCCC 58.399 37.037 7.28 0.00 42.48 4.30
768 895 9.148104 ACAAAGTATTCGTCTGTAAAATACTCC 57.852 33.333 7.28 0.00 42.48 3.85
769 896 9.953825 CACAAAGTATTCGTCTGTAAAATACTC 57.046 33.333 7.28 0.00 42.48 2.59
770 897 9.485206 ACACAAAGTATTCGTCTGTAAAATACT 57.515 29.630 0.00 0.00 44.20 2.12
773 900 8.287503 GGAACACAAAGTATTCGTCTGTAAAAT 58.712 33.333 0.00 0.00 0.00 1.82
775 902 6.203338 GGGAACACAAAGTATTCGTCTGTAAA 59.797 38.462 0.00 0.00 0.00 2.01
776 903 5.697633 GGGAACACAAAGTATTCGTCTGTAA 59.302 40.000 0.00 0.00 0.00 2.41
777 904 5.232463 GGGAACACAAAGTATTCGTCTGTA 58.768 41.667 0.00 0.00 0.00 2.74
780 907 3.671716 GGGGAACACAAAGTATTCGTCT 58.328 45.455 0.00 0.00 0.00 4.18
781 908 2.414138 CGGGGAACACAAAGTATTCGTC 59.586 50.000 0.00 0.00 0.00 4.20
782 909 2.224354 ACGGGGAACACAAAGTATTCGT 60.224 45.455 0.00 0.00 0.00 3.85
783 910 2.419667 ACGGGGAACACAAAGTATTCG 58.580 47.619 0.00 0.00 0.00 3.34
787 914 5.481105 CAGTTATACGGGGAACACAAAGTA 58.519 41.667 0.00 0.00 0.00 2.24
809 2190 2.637382 TCAGGTCTGTGGTAATCAAGCA 59.363 45.455 0.00 0.00 0.00 3.91
890 2274 5.277731 CCTGCTTCAGAAAGTTCAGAGAAAC 60.278 44.000 0.00 0.00 34.79 2.78
915 2299 6.399639 TGTGTTAGTCTGAATGTGTACAGA 57.600 37.500 0.00 0.00 40.22 3.41
945 3877 7.180946 TCTGGATGGATAAGAAGAAAGTTCAGA 59.819 37.037 0.00 0.00 0.00 3.27
951 3912 5.062528 GGCTCTGGATGGATAAGAAGAAAG 58.937 45.833 0.00 0.00 0.00 2.62
954 3915 2.630098 CGGCTCTGGATGGATAAGAAGA 59.370 50.000 0.00 0.00 0.00 2.87
973 3934 2.808206 GGTAGGATGGGTGGCTCGG 61.808 68.421 0.00 0.00 0.00 4.63
975 3936 0.983378 ACAGGTAGGATGGGTGGCTC 60.983 60.000 0.00 0.00 0.00 4.70
976 3937 0.550147 AACAGGTAGGATGGGTGGCT 60.550 55.000 0.00 0.00 0.00 4.75
978 3939 0.546598 GGAACAGGTAGGATGGGTGG 59.453 60.000 0.00 0.00 0.00 4.61
979 3940 0.178068 CGGAACAGGTAGGATGGGTG 59.822 60.000 0.00 0.00 0.00 4.61
980 3941 0.981277 CCGGAACAGGTAGGATGGGT 60.981 60.000 0.00 0.00 0.00 4.51
982 3943 1.146263 GCCGGAACAGGTAGGATGG 59.854 63.158 5.05 0.00 0.00 3.51
984 3945 3.090219 GCGCCGGAACAGGTAGGAT 62.090 63.158 5.05 0.00 0.00 3.24
985 3946 3.766691 GCGCCGGAACAGGTAGGA 61.767 66.667 5.05 0.00 0.00 2.94
986 3947 4.832608 GGCGCCGGAACAGGTAGG 62.833 72.222 12.58 0.00 0.00 3.18
987 3948 2.869503 ATTGGCGCCGGAACAGGTAG 62.870 60.000 23.90 0.00 0.00 3.18
988 3949 2.472414 AATTGGCGCCGGAACAGGTA 62.472 55.000 23.90 0.00 0.00 3.08
989 3950 3.860930 AATTGGCGCCGGAACAGGT 62.861 57.895 23.90 0.00 0.00 4.00
990 3951 3.061848 AATTGGCGCCGGAACAGG 61.062 61.111 23.90 0.00 0.00 4.00
991 3952 2.179018 CAATTGGCGCCGGAACAG 59.821 61.111 23.90 5.42 0.00 3.16
992 3953 2.281831 TCAATTGGCGCCGGAACA 60.282 55.556 23.90 0.00 0.00 3.18
993 3954 2.485122 CTCAATTGGCGCCGGAAC 59.515 61.111 23.90 0.00 0.00 3.62
994 3955 3.439540 GCTCAATTGGCGCCGGAA 61.440 61.111 23.90 12.40 0.00 4.30
1001 3962 1.657751 GGTTCCTCGGCTCAATTGGC 61.658 60.000 5.42 7.92 0.00 4.52
1004 3965 1.202879 TGTTGGTTCCTCGGCTCAATT 60.203 47.619 0.00 0.00 0.00 2.32
1016 3977 1.615392 AGCAGCTTCCATTGTTGGTTC 59.385 47.619 0.00 0.00 44.06 3.62
1122 4104 1.309549 TGGTGGGGCTGGGGATAAT 60.310 57.895 0.00 0.00 0.00 1.28
1123 4105 2.128460 TGGTGGGGCTGGGGATAA 59.872 61.111 0.00 0.00 0.00 1.75
1124 4106 2.694616 GTGGTGGGGCTGGGGATA 60.695 66.667 0.00 0.00 0.00 2.59
1133 4115 2.687909 AAAATGGGGTGGTGGTGGGG 62.688 60.000 0.00 0.00 0.00 4.96
1134 4116 1.152139 AAAATGGGGTGGTGGTGGG 60.152 57.895 0.00 0.00 0.00 4.61
1135 4117 0.178935 AGAAAATGGGGTGGTGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
1136 4118 1.256812 GAGAAAATGGGGTGGTGGTG 58.743 55.000 0.00 0.00 0.00 4.17
1137 4119 0.114364 GGAGAAAATGGGGTGGTGGT 59.886 55.000 0.00 0.00 0.00 4.16
1138 4120 0.965363 CGGAGAAAATGGGGTGGTGG 60.965 60.000 0.00 0.00 0.00 4.61
1139 4121 0.965363 CCGGAGAAAATGGGGTGGTG 60.965 60.000 0.00 0.00 0.00 4.17
1140 4122 1.382629 CCGGAGAAAATGGGGTGGT 59.617 57.895 0.00 0.00 0.00 4.16
1141 4123 2.052104 GCCGGAGAAAATGGGGTGG 61.052 63.158 5.05 0.00 0.00 4.61
1142 4124 2.052104 GGCCGGAGAAAATGGGGTG 61.052 63.158 5.05 0.00 0.00 4.61
1143 4125 2.211468 GAGGCCGGAGAAAATGGGGT 62.211 60.000 5.05 0.00 0.00 4.95
1144 4126 1.453928 GAGGCCGGAGAAAATGGGG 60.454 63.158 5.05 0.00 0.00 4.96
1145 4127 1.453928 GGAGGCCGGAGAAAATGGG 60.454 63.158 5.05 0.00 0.00 4.00
1515 4503 3.966026 CTGTCGAACTCGTCCCCGC 62.966 68.421 0.00 0.00 40.80 6.13
1516 4504 2.178521 CTGTCGAACTCGTCCCCG 59.821 66.667 0.00 0.00 40.80 5.73
1613 4601 2.815647 GAAGCGCTCCCTGTTCCG 60.816 66.667 12.06 0.00 0.00 4.30
1853 4841 2.494918 GAGCCGGTGCGTCTGTAT 59.505 61.111 1.90 0.00 44.33 2.29
2191 5179 1.003580 TCAAGAGAAGCACATCCCCAC 59.996 52.381 0.00 0.00 0.00 4.61
2282 5270 5.713861 TGTCTGACGATGATGGATCATAGAT 59.286 40.000 14.46 2.12 46.84 1.98
2296 5284 0.673333 TTTGCCGCATGTCTGACGAT 60.673 50.000 2.98 0.00 0.00 3.73
2314 5302 2.223572 CGAAGCTTCTTTGGCAGTGTTT 60.224 45.455 23.50 0.00 0.00 2.83
2336 5324 5.116882 AGAATTGTTACCATACTCTTCGCC 58.883 41.667 0.00 0.00 0.00 5.54
2344 5332 4.273480 AGCGCATGAGAATTGTTACCATAC 59.727 41.667 11.47 0.00 0.00 2.39
2437 5425 4.268884 GTGTTCCAGATATGCGAGAAGAAC 59.731 45.833 0.00 0.00 34.41 3.01
2446 5434 4.142071 TGACTCAGAGTGTTCCAGATATGC 60.142 45.833 8.15 0.00 0.00 3.14
2467 5455 1.957177 ACTCTCTGCTCTTCGTGTTGA 59.043 47.619 0.00 0.00 0.00 3.18
2500 5488 4.746535 TGCGAACATTATGTCTTCCCTA 57.253 40.909 0.00 0.00 0.00 3.53
2539 5527 7.247019 GGTATTCAAGCTTCAAAGACTGATTC 58.753 38.462 12.92 0.00 32.78 2.52
2549 5537 4.922206 AGATGTGGGTATTCAAGCTTCAA 58.078 39.130 0.00 0.00 0.00 2.69
2654 5642 2.350522 CCCGACATCCTTCTGAAACAG 58.649 52.381 0.00 0.00 0.00 3.16
2674 5662 5.762045 TGTCCGGTACTATATAAAAGACGC 58.238 41.667 0.00 0.00 0.00 5.19
2743 5731 4.453819 GCAAGCTTCTCATCAACTAACACT 59.546 41.667 0.00 0.00 0.00 3.55
2887 5875 6.583562 AGATACCGAATCAAAAGTAGGGAAG 58.416 40.000 0.00 0.00 37.03 3.46
2898 5886 5.084818 TCTGCTTTGAGATACCGAATCAA 57.915 39.130 0.00 0.00 37.03 2.57
2899 5887 4.736126 TCTGCTTTGAGATACCGAATCA 57.264 40.909 0.00 0.00 37.03 2.57
2900 5888 5.582665 AGTTTCTGCTTTGAGATACCGAATC 59.417 40.000 0.00 0.00 34.52 2.52
2901 5889 5.491982 AGTTTCTGCTTTGAGATACCGAAT 58.508 37.500 0.00 0.00 0.00 3.34
2902 5890 4.894784 AGTTTCTGCTTTGAGATACCGAA 58.105 39.130 0.00 0.00 0.00 4.30
2904 5892 6.709643 CATTAGTTTCTGCTTTGAGATACCG 58.290 40.000 0.00 0.00 0.00 4.02
2905 5893 6.094048 TGCATTAGTTTCTGCTTTGAGATACC 59.906 38.462 0.00 0.00 39.16 2.73
3097 6085 8.621286 AGTTGTGAAAGTTCTTTGTAAATCGAT 58.379 29.630 2.38 0.00 0.00 3.59
3162 6150 6.377429 AGACAGAACATAGATTTGAGACGGTA 59.623 38.462 0.00 0.00 0.00 4.02
3166 6154 7.897575 ACAAGACAGAACATAGATTTGAGAC 57.102 36.000 0.00 0.00 0.00 3.36
3186 6174 9.868389 GAGAAGCCATTTATTTTGAAAAACAAG 57.132 29.630 0.00 0.00 39.77 3.16
3231 6219 5.220777 CCAACAAGTTCATGTGAGTTTACGT 60.221 40.000 0.00 0.00 32.81 3.57
3232 6220 5.007234 TCCAACAAGTTCATGTGAGTTTACG 59.993 40.000 0.00 0.00 32.81 3.18
3262 6250 6.667007 AAATGCAGAACAAGAACCTTTTTG 57.333 33.333 0.00 0.00 0.00 2.44
3307 6295 4.564406 CCAAGTCAAGCTACTGAATGTCCT 60.564 45.833 0.00 0.00 0.00 3.85
3315 6304 4.999950 ACTGAAATCCAAGTCAAGCTACTG 59.000 41.667 0.00 0.00 0.00 2.74
3396 6385 9.019764 CAGGGAAAACAAACGCTTAATATATTG 57.980 33.333 8.28 0.00 0.00 1.90
3408 6397 4.568152 AGATTGTCAGGGAAAACAAACG 57.432 40.909 0.00 0.00 38.74 3.60
3413 6402 6.039382 ACACACTAAAGATTGTCAGGGAAAAC 59.961 38.462 0.00 0.00 0.00 2.43
3460 6449 2.309898 ATTTCCTTTGCGAAACGACG 57.690 45.000 0.00 0.00 34.68 5.12
3482 6471 1.617322 TGACACGCTAGAGGAGTTGT 58.383 50.000 0.00 0.00 0.00 3.32
3483 6472 2.949451 ATGACACGCTAGAGGAGTTG 57.051 50.000 0.00 0.00 0.00 3.16
3492 6481 4.746535 TCCTGGAAAATATGACACGCTA 57.253 40.909 0.00 0.00 0.00 4.26
3499 6490 9.002600 CGACATATGAAATCCTGGAAAATATGA 57.997 33.333 23.65 4.11 33.06 2.15
3523 6514 5.700832 ACAAGACATTAATTTCAGACAGCGA 59.299 36.000 4.50 0.00 0.00 4.93
3525 6516 8.482429 CAAAACAAGACATTAATTTCAGACAGC 58.518 33.333 4.50 0.00 0.00 4.40
3672 6672 3.577848 CCAATTCAAGGGTCAAATGTCCA 59.422 43.478 0.00 0.00 0.00 4.02
3699 6700 7.913789 TCAGGGAACTAAGAAAACTAATGCTA 58.086 34.615 0.00 0.00 40.21 3.49
3852 6853 2.287368 GGTGTCAAATGTCCAACGGTTC 60.287 50.000 0.00 0.00 0.00 3.62
3901 6902 4.441913 CCACAACTTGCTTGAAATTCCAGT 60.442 41.667 0.00 0.00 33.59 4.00
3918 6925 2.359900 CTAAGCTGGATCCACCACAAC 58.640 52.381 11.44 0.00 44.64 3.32
3950 6957 1.504446 CGCCCAATAAACACCGTGG 59.496 57.895 3.03 0.00 0.00 4.94
3951 6958 1.154112 GCGCCCAATAAACACCGTG 60.154 57.895 0.00 0.00 0.00 4.94
3952 6959 1.173444 TTGCGCCCAATAAACACCGT 61.173 50.000 4.18 0.00 0.00 4.83
3976 6983 0.445436 CACGCTAAGCCTTCAAGCTG 59.555 55.000 0.00 0.00 44.11 4.24
3998 7005 6.823689 ACTATATCTCATGACAACGGCTTTTT 59.176 34.615 0.00 0.00 0.00 1.94
4042 7050 9.672673 GGTATACATATATTTCACATGCTTCCT 57.327 33.333 5.01 0.00 0.00 3.36
4060 7068 9.601810 TGATACAGAATAGTTCAGGGTATACAT 57.398 33.333 5.01 0.00 0.00 2.29
4159 7201 6.935771 GCCATTCTATCATCAAGAGTTCTCAT 59.064 38.462 2.64 0.00 0.00 2.90
4179 7221 5.268387 TGGTGTATAACTTCCAATGCCATT 58.732 37.500 0.00 0.00 0.00 3.16
4288 7507 4.394920 CACAACACTTGTAGTCCAACACTT 59.605 41.667 0.00 0.00 43.23 3.16
4382 7615 2.862541 TGTTGCATTCTGTACTGGCTT 58.137 42.857 0.00 0.00 0.00 4.35
4393 7626 8.470040 AGAACATATTTGTCAATGTTGCATTC 57.530 30.769 7.58 0.00 44.27 2.67
4492 7725 3.845259 GTCGATGCCCCCGCTGTA 61.845 66.667 0.00 0.00 35.36 2.74
4712 7945 6.505044 TGATTGATTTTGTGAGAGTGATGG 57.495 37.500 0.00 0.00 0.00 3.51
4718 7951 8.512956 AGACTTGAATGATTGATTTTGTGAGAG 58.487 33.333 0.00 0.00 0.00 3.20
4719 7952 8.400184 AGACTTGAATGATTGATTTTGTGAGA 57.600 30.769 0.00 0.00 0.00 3.27
4756 7989 9.360901 AGTATAACTCTTGATGATGAGAAGCTA 57.639 33.333 2.06 0.00 34.65 3.32
4774 8007 5.367937 ACTTGGATGGATCAGCAGTATAACT 59.632 40.000 0.00 0.00 0.00 2.24
4775 8008 5.615289 ACTTGGATGGATCAGCAGTATAAC 58.385 41.667 0.00 0.00 0.00 1.89
4776 8009 5.894298 ACTTGGATGGATCAGCAGTATAA 57.106 39.130 0.00 0.00 0.00 0.98
4777 8010 5.894298 AACTTGGATGGATCAGCAGTATA 57.106 39.130 0.00 0.00 0.00 1.47
4778 8011 4.785346 AACTTGGATGGATCAGCAGTAT 57.215 40.909 0.00 0.00 0.00 2.12
4779 8012 5.189736 ACTTAACTTGGATGGATCAGCAGTA 59.810 40.000 0.00 0.00 0.00 2.74
4780 8013 4.018960 ACTTAACTTGGATGGATCAGCAGT 60.019 41.667 0.00 0.00 0.00 4.40
4781 8014 4.334759 CACTTAACTTGGATGGATCAGCAG 59.665 45.833 0.00 0.00 0.00 4.24
4782 8015 4.263462 ACACTTAACTTGGATGGATCAGCA 60.263 41.667 0.00 0.00 0.00 4.41
4783 8016 4.265073 ACACTTAACTTGGATGGATCAGC 58.735 43.478 0.00 0.00 0.00 4.26
4784 8017 6.536582 CAGTACACTTAACTTGGATGGATCAG 59.463 42.308 0.00 0.00 0.00 2.90
4915 8150 2.169832 TGACCGGAAGAAGCTTGAAG 57.830 50.000 9.46 0.00 0.00 3.02
4944 8179 2.078849 ATTGACATGTCGCTTGTCGA 57.921 45.000 20.54 13.94 45.14 4.20
4945 8180 2.880822 AATTGACATGTCGCTTGTCG 57.119 45.000 20.54 0.00 45.14 4.35
4946 8181 3.665409 CACAAATTGACATGTCGCTTGTC 59.335 43.478 25.32 14.54 43.04 3.18
4947 8182 3.314913 TCACAAATTGACATGTCGCTTGT 59.685 39.130 23.68 23.68 32.28 3.16
4948 8183 3.887741 TCACAAATTGACATGTCGCTTG 58.112 40.909 20.54 21.88 0.00 4.01
4949 8184 4.022935 ACATCACAAATTGACATGTCGCTT 60.023 37.500 20.54 13.20 36.92 4.68
4950 8185 3.503363 ACATCACAAATTGACATGTCGCT 59.497 39.130 20.54 7.71 36.92 4.93
4951 8186 3.825308 ACATCACAAATTGACATGTCGC 58.175 40.909 20.54 0.00 36.92 5.19
4952 8187 6.638063 AGAAAACATCACAAATTGACATGTCG 59.362 34.615 20.54 8.60 36.92 4.35
4963 8198 7.890515 TGCCATGTATTAGAAAACATCACAAA 58.109 30.769 0.00 0.00 34.12 2.83
4964 8199 7.459795 TGCCATGTATTAGAAAACATCACAA 57.540 32.000 0.00 0.00 34.12 3.33
4993 8228 4.406972 TCACCTCTGGTTGGATGATCTTAG 59.593 45.833 0.00 0.00 31.02 2.18
4997 8232 3.853355 ATCACCTCTGGTTGGATGATC 57.147 47.619 0.00 0.00 31.02 2.92
5003 8238 5.545588 CATAGATGTATCACCTCTGGTTGG 58.454 45.833 0.00 0.00 31.02 3.77
5006 8241 4.226384 TGCATAGATGTATCACCTCTGGT 58.774 43.478 0.00 0.00 35.62 4.00
5007 8242 4.879197 TGCATAGATGTATCACCTCTGG 57.121 45.455 0.00 0.00 0.00 3.86
5008 8243 4.993584 GGTTGCATAGATGTATCACCTCTG 59.006 45.833 0.00 0.00 0.00 3.35
5036 8283 9.973450 AAAAGTAGCTATGTATGACTACAGATG 57.027 33.333 0.00 0.00 41.05 2.90
5049 8296 8.331730 ACCGTTCAATTAAAAAGTAGCTATGT 57.668 30.769 0.00 0.00 0.00 2.29
5053 8300 7.229106 TGGTAACCGTTCAATTAAAAAGTAGCT 59.771 33.333 0.00 0.00 0.00 3.32
5059 8306 9.250624 CTTGATTGGTAACCGTTCAATTAAAAA 57.749 29.630 0.00 0.00 32.05 1.94
5065 8312 4.457949 GGTCTTGATTGGTAACCGTTCAAT 59.542 41.667 0.00 0.00 34.27 2.57
5071 8318 2.290071 ACCTGGTCTTGATTGGTAACCG 60.290 50.000 0.00 0.00 32.50 4.44
5082 8329 5.458041 AATTCAATTGTCACCTGGTCTTG 57.542 39.130 5.13 0.00 0.00 3.02
5090 8337 7.761249 CAGAGGGATTTAAATTCAATTGTCACC 59.239 37.037 8.74 0.00 0.00 4.02
5095 8342 6.694411 CGCTCAGAGGGATTTAAATTCAATTG 59.306 38.462 8.88 0.00 0.00 2.32
5098 8345 5.496556 TCGCTCAGAGGGATTTAAATTCAA 58.503 37.500 13.11 0.00 31.82 2.69
5100 8347 5.354234 TGTTCGCTCAGAGGGATTTAAATTC 59.646 40.000 17.45 0.00 37.03 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.