Multiple sequence alignment - TraesCS3B01G102500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G102500 chr3B 100.000 5183 0 0 1 5183 68915488 68910306 0.000000e+00 9572.0
1 TraesCS3B01G102500 chr3B 99.794 486 1 0 1 486 68922156 68921671 0.000000e+00 893.0
2 TraesCS3B01G102500 chr3B 92.771 166 11 1 1847 2011 552226403 552226568 6.710000e-59 239.0
3 TraesCS3B01G102500 chr3D 95.150 1567 57 9 2036 3584 44010204 44008639 0.000000e+00 2455.0
4 TraesCS3B01G102500 chr3D 90.964 1162 65 16 670 1813 44011429 44010290 0.000000e+00 1528.0
5 TraesCS3B01G102500 chr3D 89.207 1047 71 23 3588 4623 44008448 44007433 0.000000e+00 1269.0
6 TraesCS3B01G102500 chr3D 86.872 617 58 13 1 611 44012026 44011427 0.000000e+00 669.0
7 TraesCS3B01G102500 chr3D 83.779 598 27 21 4622 5183 44007329 44006766 2.150000e-138 503.0
8 TraesCS3B01G102500 chr3D 92.262 168 13 0 1851 2018 363866005 363866172 6.710000e-59 239.0
9 TraesCS3B01G102500 chr3A 95.641 1537 54 11 2054 3579 56229255 56227721 0.000000e+00 2455.0
10 TraesCS3B01G102500 chr3A 83.584 1663 147 57 3588 5179 56227526 56225919 0.000000e+00 1443.0
11 TraesCS3B01G102500 chr3A 91.211 933 48 15 897 1813 56230267 56229353 0.000000e+00 1238.0
12 TraesCS3B01G102500 chr3A 83.803 568 67 14 50 611 56231296 56230748 2.770000e-142 516.0
13 TraesCS3B01G102500 chr3A 90.099 202 13 5 670 870 56230750 56230555 6.660000e-64 255.0
14 TraesCS3B01G102500 chr3A 95.122 41 1 1 8 47 56231362 56231322 4.330000e-06 63.9
15 TraesCS3B01G102500 chr2D 93.333 165 9 2 1847 2009 524963804 524963640 5.190000e-60 243.0
16 TraesCS3B01G102500 chr2A 93.293 164 10 1 1849 2011 676177970 676177807 1.860000e-59 241.0
17 TraesCS3B01G102500 chr2A 93.252 163 10 1 1850 2011 655039117 655039279 6.710000e-59 239.0
18 TraesCS3B01G102500 chr2A 90.556 180 13 4 1851 2027 184561154 184561332 8.680000e-58 235.0
19 TraesCS3B01G102500 chr2A 90.625 64 4 1 3588 3649 602773767 602773830 3.330000e-12 84.2
20 TraesCS3B01G102500 chr2A 95.652 46 2 0 613 658 748958215 748958260 2.000000e-09 75.0
21 TraesCS3B01G102500 chr1D 93.293 164 10 1 1849 2011 103408881 103408718 1.860000e-59 241.0
22 TraesCS3B01G102500 chr1D 91.667 48 4 0 612 659 483106329 483106282 3.350000e-07 67.6
23 TraesCS3B01G102500 chr5D 92.771 166 11 1 1849 2013 150835731 150835566 6.710000e-59 239.0
24 TraesCS3B01G102500 chr6B 90.909 176 13 3 1851 2024 127605973 127605799 3.120000e-57 233.0
25 TraesCS3B01G102500 chr5A 89.706 68 2 3 3584 3649 128434588 128434524 1.200000e-11 82.4
26 TraesCS3B01G102500 chr5A 88.235 51 6 0 617 667 616350381 616350431 1.560000e-05 62.1
27 TraesCS3B01G102500 chr2B 87.500 64 6 1 3588 3649 393444519 393444582 7.200000e-09 73.1
28 TraesCS3B01G102500 chr2B 93.478 46 1 1 3606 3649 259014665 259014620 3.350000e-07 67.6
29 TraesCS3B01G102500 chr7D 89.474 57 5 1 612 668 42522809 42522864 2.590000e-08 71.3
30 TraesCS3B01G102500 chr7D 89.583 48 5 0 612 659 516979248 516979201 1.560000e-05 62.1
31 TraesCS3B01G102500 chr1A 89.583 48 5 0 612 659 20167397 20167444 1.560000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G102500 chr3B 68910306 68915488 5182 True 9572.00 9572 100.0000 1 5183 1 chr3B.!!$R1 5182
1 TraesCS3B01G102500 chr3D 44006766 44012026 5260 True 1284.80 2455 89.1944 1 5183 5 chr3D.!!$R1 5182
2 TraesCS3B01G102500 chr3A 56225919 56231362 5443 True 995.15 2455 89.9100 8 5179 6 chr3A.!!$R1 5171

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 1227 0.109342 CCATTTCCATCCCCTCCGAG 59.891 60.000 0.0 0.0 0.00 4.63 F
999 1300 1.006043 GGGGAAAGGAAGGAAGGAAGG 59.994 57.143 0.0 0.0 0.00 3.46 F
1332 1633 1.211212 GTAGCGGGGTTGGTAGGATTT 59.789 52.381 0.0 0.0 0.00 2.17 F
1634 1950 1.419387 GAGATTATGGAGCCCTGCTGT 59.581 52.381 0.0 0.0 39.88 4.40 F
3324 3688 1.003839 AAGCGATGAGGCCGTTGAA 60.004 52.632 0.0 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2780 3132 2.159179 AGTTTGACAAGCCCAAAGGT 57.841 45.000 0.00 0.0 34.59 3.50 R
2816 3168 3.370978 CCTACACAAGCGGATAACAGTTG 59.629 47.826 0.00 0.0 0.00 3.16 R
3318 3682 2.193306 ACTGCTTTGCTGTTTCAACG 57.807 45.000 0.00 0.0 37.43 4.10 R
3524 3891 1.076332 CGCCAGGTGCTTACACTTAC 58.924 55.000 0.00 0.0 46.57 2.34 R
4289 4877 0.031857 CCAACAAAATGTGAGCGGCA 59.968 50.000 1.45 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 45 9.683069 AACTTTAGCAAACTTGATGAAATGTAG 57.317 29.630 0.00 0.00 0.00 2.74
47 50 5.163513 CAAACTTGATGAAATGTAGCCCAC 58.836 41.667 0.00 0.00 0.00 4.61
63 89 1.820519 CCCACAGTTCATTCCCACATG 59.179 52.381 0.00 0.00 0.00 3.21
93 119 9.145865 CCATTTATACCACGTTTAAAAAGCAAT 57.854 29.630 0.00 0.00 0.00 3.56
170 196 5.164233 ACAATCTCGACACATGTGAACTAG 58.836 41.667 31.94 22.37 0.00 2.57
171 197 3.217599 TCTCGACACATGTGAACTAGC 57.782 47.619 31.94 11.97 0.00 3.42
172 198 2.094700 TCTCGACACATGTGAACTAGCC 60.095 50.000 31.94 10.17 0.00 3.93
173 199 1.893137 TCGACACATGTGAACTAGCCT 59.107 47.619 31.94 6.96 0.00 4.58
228 257 5.380043 CCAGTCATATAGGGAAACTGCAAT 58.620 41.667 0.00 0.00 36.79 3.56
236 265 9.434420 CATATAGGGAAACTGCAATTTCAAAAA 57.566 29.630 20.98 5.07 39.85 1.94
311 340 7.912250 AGAATCATACGCATTCATCAAGAAAAC 59.088 33.333 0.00 0.00 40.22 2.43
340 369 8.826710 TGCAATTTATCTTCGGTATAAGAACAG 58.173 33.333 0.00 0.00 38.90 3.16
408 438 3.479505 TTATCATTTTCCACCGTTGCG 57.520 42.857 0.00 0.00 0.00 4.85
423 453 3.233578 CGTTGCGCATGAAACAAATACT 58.766 40.909 12.75 0.00 32.68 2.12
425 456 4.225984 GTTGCGCATGAAACAAATACTCA 58.774 39.130 12.75 0.00 33.44 3.41
478 509 6.590234 AAACTCCAAACATGTCCTAAATCC 57.410 37.500 0.00 0.00 0.00 3.01
488 519 2.752354 TGTCCTAAATCCACAAATGCCG 59.248 45.455 0.00 0.00 0.00 5.69
491 522 1.476085 CTAAATCCACAAATGCCGGCA 59.524 47.619 34.80 34.80 0.00 5.69
506 537 3.129638 TGCCGGCACATATTTTTAGAACC 59.870 43.478 29.03 0.00 0.00 3.62
510 541 4.142491 CGGCACATATTTTTAGAACCTGCA 60.142 41.667 0.00 0.00 0.00 4.41
543 574 4.653801 AGGCAAAACCACTATTCAAAACCT 59.346 37.500 0.00 0.00 43.14 3.50
547 578 2.525368 ACCACTATTCAAAACCTGGCC 58.475 47.619 0.00 0.00 0.00 5.36
584 617 6.439675 AAACGGTTTTTGTAAACTCTAGCA 57.560 33.333 0.00 0.00 42.61 3.49
611 644 6.549433 AATATGAATGCCCACACTTCAAAT 57.451 33.333 0.00 0.00 33.03 2.32
612 645 4.895668 ATGAATGCCCACACTTCAAATT 57.104 36.364 0.00 0.00 33.03 1.82
613 646 4.255833 TGAATGCCCACACTTCAAATTC 57.744 40.909 0.00 0.00 0.00 2.17
614 647 3.896888 TGAATGCCCACACTTCAAATTCT 59.103 39.130 0.00 0.00 0.00 2.40
615 648 4.022068 TGAATGCCCACACTTCAAATTCTC 60.022 41.667 0.00 0.00 0.00 2.87
616 649 3.228188 TGCCCACACTTCAAATTCTCT 57.772 42.857 0.00 0.00 0.00 3.10
617 650 2.886523 TGCCCACACTTCAAATTCTCTG 59.113 45.455 0.00 0.00 0.00 3.35
618 651 2.887152 GCCCACACTTCAAATTCTCTGT 59.113 45.455 0.00 0.00 0.00 3.41
619 652 4.072131 GCCCACACTTCAAATTCTCTGTA 58.928 43.478 0.00 0.00 0.00 2.74
620 653 4.083271 GCCCACACTTCAAATTCTCTGTAC 60.083 45.833 0.00 0.00 0.00 2.90
621 654 5.308825 CCCACACTTCAAATTCTCTGTACT 58.691 41.667 0.00 0.00 0.00 2.73
622 655 6.464222 CCCACACTTCAAATTCTCTGTACTA 58.536 40.000 0.00 0.00 0.00 1.82
623 656 6.369065 CCCACACTTCAAATTCTCTGTACTAC 59.631 42.308 0.00 0.00 0.00 2.73
624 657 6.369065 CCACACTTCAAATTCTCTGTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
625 658 7.155328 CACACTTCAAATTCTCTGTACTACCT 58.845 38.462 0.00 0.00 0.00 3.08
626 659 7.657761 CACACTTCAAATTCTCTGTACTACCTT 59.342 37.037 0.00 0.00 0.00 3.50
627 660 7.657761 ACACTTCAAATTCTCTGTACTACCTTG 59.342 37.037 0.00 0.00 0.00 3.61
628 661 6.651225 ACTTCAAATTCTCTGTACTACCTTGC 59.349 38.462 0.00 0.00 0.00 4.01
629 662 5.488341 TCAAATTCTCTGTACTACCTTGCC 58.512 41.667 0.00 0.00 0.00 4.52
630 663 3.802948 ATTCTCTGTACTACCTTGCCG 57.197 47.619 0.00 0.00 0.00 5.69
631 664 1.471119 TCTCTGTACTACCTTGCCGG 58.529 55.000 0.00 0.00 39.35 6.13
633 666 1.549170 CTCTGTACTACCTTGCCGGTT 59.451 52.381 1.90 0.00 46.37 4.44
634 667 1.274167 TCTGTACTACCTTGCCGGTTG 59.726 52.381 1.90 1.51 46.37 3.77
635 668 1.274167 CTGTACTACCTTGCCGGTTGA 59.726 52.381 1.90 0.00 46.37 3.18
636 669 1.903860 TGTACTACCTTGCCGGTTGAT 59.096 47.619 1.90 0.00 46.37 2.57
637 670 2.277084 GTACTACCTTGCCGGTTGATG 58.723 52.381 1.90 0.00 46.37 3.07
638 671 0.981183 ACTACCTTGCCGGTTGATGA 59.019 50.000 1.90 0.00 46.37 2.92
639 672 1.349688 ACTACCTTGCCGGTTGATGAA 59.650 47.619 1.90 0.00 46.37 2.57
640 673 2.026262 ACTACCTTGCCGGTTGATGAAT 60.026 45.455 1.90 0.00 46.37 2.57
641 674 2.799126 ACCTTGCCGGTTGATGAATA 57.201 45.000 1.90 0.00 46.37 1.75
642 675 2.643551 ACCTTGCCGGTTGATGAATAG 58.356 47.619 1.90 0.00 46.37 1.73
643 676 2.238646 ACCTTGCCGGTTGATGAATAGA 59.761 45.455 1.90 0.00 46.37 1.98
644 677 3.117888 ACCTTGCCGGTTGATGAATAGAT 60.118 43.478 1.90 0.00 46.37 1.98
645 678 3.885297 CCTTGCCGGTTGATGAATAGATT 59.115 43.478 1.90 0.00 0.00 2.40
646 679 4.261322 CCTTGCCGGTTGATGAATAGATTG 60.261 45.833 1.90 0.00 0.00 2.67
647 680 4.149511 TGCCGGTTGATGAATAGATTGA 57.850 40.909 1.90 0.00 0.00 2.57
648 681 4.522114 TGCCGGTTGATGAATAGATTGAA 58.478 39.130 1.90 0.00 0.00 2.69
649 682 4.946772 TGCCGGTTGATGAATAGATTGAAA 59.053 37.500 1.90 0.00 0.00 2.69
650 683 5.066375 TGCCGGTTGATGAATAGATTGAAAG 59.934 40.000 1.90 0.00 0.00 2.62
651 684 5.066505 GCCGGTTGATGAATAGATTGAAAGT 59.933 40.000 1.90 0.00 0.00 2.66
652 685 6.404734 GCCGGTTGATGAATAGATTGAAAGTT 60.405 38.462 1.90 0.00 0.00 2.66
653 686 7.538575 CCGGTTGATGAATAGATTGAAAGTTT 58.461 34.615 0.00 0.00 0.00 2.66
654 687 8.028938 CCGGTTGATGAATAGATTGAAAGTTTT 58.971 33.333 0.00 0.00 0.00 2.43
655 688 9.410556 CGGTTGATGAATAGATTGAAAGTTTTT 57.589 29.630 0.00 0.00 0.00 1.94
660 693 8.902040 ATGAATAGATTGAAAGTTTTTCTCGC 57.098 30.769 3.53 0.00 0.00 5.03
661 694 7.305474 TGAATAGATTGAAAGTTTTTCTCGCC 58.695 34.615 3.53 0.00 0.00 5.54
662 695 6.817765 ATAGATTGAAAGTTTTTCTCGCCA 57.182 33.333 3.53 0.00 0.00 5.69
663 696 5.514274 AGATTGAAAGTTTTTCTCGCCAA 57.486 34.783 3.53 0.00 0.00 4.52
664 697 5.901552 AGATTGAAAGTTTTTCTCGCCAAA 58.098 33.333 3.53 0.00 0.00 3.28
665 698 6.337356 AGATTGAAAGTTTTTCTCGCCAAAA 58.663 32.000 3.53 0.00 0.00 2.44
666 699 6.816140 AGATTGAAAGTTTTTCTCGCCAAAAA 59.184 30.769 3.53 1.27 33.72 1.94
693 726 2.179517 GAGCAGGGTCGTGTCTCG 59.820 66.667 0.00 0.00 41.41 4.04
700 733 2.257676 GTCGTGTCTCGGTCCCAC 59.742 66.667 0.00 0.00 40.32 4.61
728 761 3.576118 CTGATCATCCTCGGACCATACTT 59.424 47.826 0.00 0.00 0.00 2.24
902 1199 4.592942 CCCATATTCGATCCAACATCCAT 58.407 43.478 0.00 0.00 0.00 3.41
905 1202 3.862877 ATTCGATCCAACATCCATCCA 57.137 42.857 0.00 0.00 0.00 3.41
914 1211 3.501568 CCAACATCCATCCATCCATCCAT 60.502 47.826 0.00 0.00 0.00 3.41
927 1224 1.203100 CCATCCATTTCCATCCCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
930 1227 0.109342 CCATTTCCATCCCCTCCGAG 59.891 60.000 0.00 0.00 0.00 4.63
931 1228 1.131638 CATTTCCATCCCCTCCGAGA 58.868 55.000 0.00 0.00 0.00 4.04
996 1297 1.670059 GAGGGGAAAGGAAGGAAGGA 58.330 55.000 0.00 0.00 0.00 3.36
999 1300 1.006043 GGGGAAAGGAAGGAAGGAAGG 59.994 57.143 0.00 0.00 0.00 3.46
1304 1605 1.580942 CATTTCCAGTGTGTGCCCG 59.419 57.895 0.00 0.00 0.00 6.13
1332 1633 1.211212 GTAGCGGGGTTGGTAGGATTT 59.789 52.381 0.00 0.00 0.00 2.17
1338 1639 2.369394 GGGTTGGTAGGATTTCTGCTG 58.631 52.381 0.00 0.00 0.00 4.41
1349 1656 2.105006 TTTCTGCTGCCTAGAGCTTG 57.895 50.000 5.16 0.00 44.23 4.01
1378 1685 4.459337 GCCACAAAGCCTGAACTAGTAAAT 59.541 41.667 0.00 0.00 0.00 1.40
1397 1704 3.753294 ATATCTAGTTTGACCCTGCGG 57.247 47.619 0.00 0.00 0.00 5.69
1406 1713 3.011517 ACCCTGCGGCATCCTTCT 61.012 61.111 1.75 0.00 0.00 2.85
1452 1759 5.169836 AGTTTCACACGGACAAATTCTTC 57.830 39.130 0.00 0.00 0.00 2.87
1454 1761 5.299279 AGTTTCACACGGACAAATTCTTCAT 59.701 36.000 0.00 0.00 0.00 2.57
1457 1764 4.452114 TCACACGGACAAATTCTTCATCAG 59.548 41.667 0.00 0.00 0.00 2.90
1458 1765 4.214119 CACACGGACAAATTCTTCATCAGT 59.786 41.667 0.00 0.00 0.00 3.41
1460 1767 5.995282 ACACGGACAAATTCTTCATCAGTAA 59.005 36.000 0.00 0.00 0.00 2.24
1461 1768 6.655003 ACACGGACAAATTCTTCATCAGTAAT 59.345 34.615 0.00 0.00 0.00 1.89
1462 1769 7.174946 ACACGGACAAATTCTTCATCAGTAATT 59.825 33.333 0.00 0.00 0.00 1.40
1485 1795 9.865321 AATTAAACAAAACATCATCCATCTCAG 57.135 29.630 0.00 0.00 0.00 3.35
1487 1797 6.754702 AACAAAACATCATCCATCTCAGAG 57.245 37.500 0.00 0.00 0.00 3.35
1589 1905 2.624838 CAACAAGATTGTCAAGGGCTGT 59.375 45.455 0.00 0.00 41.31 4.40
1634 1950 1.419387 GAGATTATGGAGCCCTGCTGT 59.581 52.381 0.00 0.00 39.88 4.40
1656 1972 5.776208 TGTAGTGTCAAGGACAGGTTACATA 59.224 40.000 0.00 0.00 43.57 2.29
1661 1977 5.761234 TGTCAAGGACAGGTTACATAACAAC 59.239 40.000 4.27 0.00 37.67 3.32
1666 1982 6.465084 AGGACAGGTTACATAACAACTTCTC 58.535 40.000 4.27 0.00 37.92 2.87
1669 1985 7.064728 GGACAGGTTACATAACAACTTCTCATC 59.935 40.741 4.27 0.00 37.92 2.92
1670 1986 7.680730 ACAGGTTACATAACAACTTCTCATCT 58.319 34.615 4.27 0.00 37.92 2.90
1671 1987 7.604164 ACAGGTTACATAACAACTTCTCATCTG 59.396 37.037 4.27 0.00 37.92 2.90
1679 1995 1.494960 ACTTCTCATCTGCCTCCTCC 58.505 55.000 0.00 0.00 0.00 4.30
1744 2064 2.917933 CAGCTCCCAACCGATTTATGA 58.082 47.619 0.00 0.00 0.00 2.15
1756 2076 6.935240 ACCGATTTATGATTCAGGATAGGA 57.065 37.500 10.60 0.00 0.00 2.94
1789 2109 1.807573 CGACGCTGAAGAGAAGGGC 60.808 63.158 0.00 0.00 0.00 5.19
1818 2161 2.547990 ACCCGGAAAGGTGAGATACTT 58.452 47.619 0.73 0.00 39.24 2.24
1823 2166 3.368427 CGGAAAGGTGAGATACTTGCTGA 60.368 47.826 0.00 0.00 31.42 4.26
1831 2174 5.703130 GGTGAGATACTTGCTGACTTCTTTT 59.297 40.000 0.00 0.00 0.00 2.27
1832 2175 6.128418 GGTGAGATACTTGCTGACTTCTTTTC 60.128 42.308 0.00 0.00 0.00 2.29
1833 2176 6.425114 GTGAGATACTTGCTGACTTCTTTTCA 59.575 38.462 0.00 0.00 0.00 2.69
1834 2177 7.118971 GTGAGATACTTGCTGACTTCTTTTCAT 59.881 37.037 0.00 0.00 0.00 2.57
1835 2178 7.118825 TGAGATACTTGCTGACTTCTTTTCATG 59.881 37.037 0.00 0.00 0.00 3.07
1836 2179 6.939163 AGATACTTGCTGACTTCTTTTCATGT 59.061 34.615 0.00 0.00 0.00 3.21
1838 2181 5.825507 ACTTGCTGACTTCTTTTCATGTTC 58.174 37.500 0.00 0.00 0.00 3.18
1841 2184 4.889409 TGCTGACTTCTTTTCATGTTCCTT 59.111 37.500 0.00 0.00 0.00 3.36
1842 2185 5.009010 TGCTGACTTCTTTTCATGTTCCTTC 59.991 40.000 0.00 0.00 0.00 3.46
1843 2186 5.240403 GCTGACTTCTTTTCATGTTCCTTCT 59.760 40.000 0.00 0.00 0.00 2.85
1845 2188 6.595682 TGACTTCTTTTCATGTTCCTTCTCT 58.404 36.000 0.00 0.00 0.00 3.10
1846 2189 7.056635 TGACTTCTTTTCATGTTCCTTCTCTT 58.943 34.615 0.00 0.00 0.00 2.85
1849 2192 8.193438 ACTTCTTTTCATGTTCCTTCTCTTTTG 58.807 33.333 0.00 0.00 0.00 2.44
1850 2193 7.645058 TCTTTTCATGTTCCTTCTCTTTTGT 57.355 32.000 0.00 0.00 0.00 2.83
1851 2194 8.746052 TCTTTTCATGTTCCTTCTCTTTTGTA 57.254 30.769 0.00 0.00 0.00 2.41
1852 2195 8.621286 TCTTTTCATGTTCCTTCTCTTTTGTAC 58.379 33.333 0.00 0.00 0.00 2.90
1853 2196 8.519799 TTTTCATGTTCCTTCTCTTTTGTACT 57.480 30.769 0.00 0.00 0.00 2.73
1855 2198 6.231211 TCATGTTCCTTCTCTTTTGTACTCC 58.769 40.000 0.00 0.00 0.00 3.85
1856 2199 5.888982 TGTTCCTTCTCTTTTGTACTCCT 57.111 39.130 0.00 0.00 0.00 3.69
1858 2201 6.289064 TGTTCCTTCTCTTTTGTACTCCTTC 58.711 40.000 0.00 0.00 0.00 3.46
1859 2202 5.485209 TCCTTCTCTTTTGTACTCCTTCC 57.515 43.478 0.00 0.00 0.00 3.46
1861 2204 5.607171 TCCTTCTCTTTTGTACTCCTTCCTT 59.393 40.000 0.00 0.00 0.00 3.36
1862 2205 6.101296 TCCTTCTCTTTTGTACTCCTTCCTTT 59.899 38.462 0.00 0.00 0.00 3.11
1863 2206 6.773200 CCTTCTCTTTTGTACTCCTTCCTTTT 59.227 38.462 0.00 0.00 0.00 2.27
1865 2208 7.138054 TCTCTTTTGTACTCCTTCCTTTTCT 57.862 36.000 0.00 0.00 0.00 2.52
1867 2210 8.711170 TCTCTTTTGTACTCCTTCCTTTTCTAA 58.289 33.333 0.00 0.00 0.00 2.10
1868 2211 9.338622 CTCTTTTGTACTCCTTCCTTTTCTAAA 57.661 33.333 0.00 0.00 0.00 1.85
1869 2212 9.862149 TCTTTTGTACTCCTTCCTTTTCTAAAT 57.138 29.630 0.00 0.00 0.00 1.40
1876 2219 8.982091 ACTCCTTCCTTTTCTAAATATAAGCC 57.018 34.615 0.00 0.00 0.00 4.35
1877 2220 7.999545 ACTCCTTCCTTTTCTAAATATAAGCCC 59.000 37.037 0.00 0.00 0.00 5.19
1878 2221 8.114301 TCCTTCCTTTTCTAAATATAAGCCCT 57.886 34.615 0.00 0.00 0.00 5.19
1879 2222 8.566109 TCCTTCCTTTTCTAAATATAAGCCCTT 58.434 33.333 0.00 0.00 0.00 3.95
1880 2223 9.201989 CCTTCCTTTTCTAAATATAAGCCCTTT 57.798 33.333 0.00 0.00 0.00 3.11
1898 2241 8.512966 AGCCCTTTTAGAGATTTCAATAGAAC 57.487 34.615 0.00 0.00 32.39 3.01
1899 2242 8.332487 AGCCCTTTTAGAGATTTCAATAGAACT 58.668 33.333 0.00 0.00 32.39 3.01
1900 2243 9.614792 GCCCTTTTAGAGATTTCAATAGAACTA 57.385 33.333 0.00 0.00 32.39 2.24
1908 2251 9.132923 AGAGATTTCAATAGAACTACATACGGA 57.867 33.333 0.00 0.00 32.39 4.69
1909 2252 9.915629 GAGATTTCAATAGAACTACATACGGAT 57.084 33.333 0.00 0.00 32.39 4.18
1910 2253 9.698309 AGATTTCAATAGAACTACATACGGATG 57.302 33.333 5.94 5.94 34.66 3.51
1911 2254 9.477484 GATTTCAATAGAACTACATACGGATGT 57.523 33.333 19.12 19.12 40.51 3.06
1912 2255 9.832445 ATTTCAATAGAACTACATACGGATGTT 57.168 29.630 20.49 0.00 39.21 2.71
1913 2256 9.661563 TTTCAATAGAACTACATACGGATGTTT 57.338 29.630 20.49 8.13 39.21 2.83
1920 2263 9.128404 AGAACTACATACGGATGTTTATAGACA 57.872 33.333 20.49 0.00 44.18 3.41
1921 2264 9.909644 GAACTACATACGGATGTTTATAGACAT 57.090 33.333 20.49 8.56 44.18 3.06
1952 2295 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1953 2296 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1954 2297 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1955 2298 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1956 2299 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1957 2300 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1958 2301 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1959 2302 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1960 2303 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1961 2304 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1962 2305 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
1963 2306 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1964 2307 5.105310 ACTCATTTTGCTCCGTATGTAGTCT 60.105 40.000 0.00 0.00 0.00 3.24
1965 2308 6.096423 ACTCATTTTGCTCCGTATGTAGTCTA 59.904 38.462 0.00 0.00 0.00 2.59
1966 2309 7.050970 TCATTTTGCTCCGTATGTAGTCTAT 57.949 36.000 0.00 0.00 0.00 1.98
1967 2310 8.173542 TCATTTTGCTCCGTATGTAGTCTATA 57.826 34.615 0.00 0.00 0.00 1.31
1968 2311 8.803235 TCATTTTGCTCCGTATGTAGTCTATAT 58.197 33.333 0.00 0.00 0.00 0.86
1969 2312 9.424319 CATTTTGCTCCGTATGTAGTCTATATT 57.576 33.333 0.00 0.00 0.00 1.28
1970 2313 8.812147 TTTTGCTCCGTATGTAGTCTATATTG 57.188 34.615 0.00 0.00 0.00 1.90
1971 2314 7.754851 TTGCTCCGTATGTAGTCTATATTGA 57.245 36.000 0.00 0.00 0.00 2.57
1972 2315 7.754851 TGCTCCGTATGTAGTCTATATTGAA 57.245 36.000 0.00 0.00 0.00 2.69
1973 2316 8.173542 TGCTCCGTATGTAGTCTATATTGAAA 57.826 34.615 0.00 0.00 0.00 2.69
1974 2317 8.803235 TGCTCCGTATGTAGTCTATATTGAAAT 58.197 33.333 0.00 0.00 0.00 2.17
1975 2318 9.291664 GCTCCGTATGTAGTCTATATTGAAATC 57.708 37.037 0.00 0.00 0.00 2.17
2002 2345 9.075678 TCTAGAAGGTCTTATATTTAGGAACGG 57.924 37.037 0.00 0.00 0.00 4.44
2003 2346 7.909485 AGAAGGTCTTATATTTAGGAACGGA 57.091 36.000 0.00 0.00 0.00 4.69
2004 2347 7.953752 AGAAGGTCTTATATTTAGGAACGGAG 58.046 38.462 0.00 0.00 0.00 4.63
2005 2348 6.667558 AGGTCTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
2006 2349 5.543020 AGGTCTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
2007 2350 5.541484 GGTCTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
2008 2351 6.295180 GGTCTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
2009 2352 6.267242 GTCTTATATTTAGGAACGGAGGGAGT 59.733 42.308 0.00 0.00 0.00 3.85
2010 2353 7.449704 GTCTTATATTTAGGAACGGAGGGAGTA 59.550 40.741 0.00 0.00 0.00 2.59
2011 2354 8.006564 TCTTATATTTAGGAACGGAGGGAGTAA 58.993 37.037 0.00 0.00 0.00 2.24
2012 2355 8.731591 TTATATTTAGGAACGGAGGGAGTAAT 57.268 34.615 0.00 0.00 0.00 1.89
2013 2356 9.827198 TTATATTTAGGAACGGAGGGAGTAATA 57.173 33.333 0.00 0.00 0.00 0.98
2014 2357 8.731591 ATATTTAGGAACGGAGGGAGTAATAA 57.268 34.615 0.00 0.00 0.00 1.40
2015 2358 7.628501 ATTTAGGAACGGAGGGAGTAATAAT 57.371 36.000 0.00 0.00 0.00 1.28
2016 2359 7.441903 TTTAGGAACGGAGGGAGTAATAATT 57.558 36.000 0.00 0.00 0.00 1.40
2017 2360 5.970501 AGGAACGGAGGGAGTAATAATTT 57.029 39.130 0.00 0.00 0.00 1.82
2018 2361 5.681639 AGGAACGGAGGGAGTAATAATTTG 58.318 41.667 0.00 0.00 0.00 2.32
2019 2362 5.191124 AGGAACGGAGGGAGTAATAATTTGT 59.809 40.000 0.00 0.00 0.00 2.83
2020 2363 6.384886 AGGAACGGAGGGAGTAATAATTTGTA 59.615 38.462 0.00 0.00 0.00 2.41
2021 2364 7.072076 AGGAACGGAGGGAGTAATAATTTGTAT 59.928 37.037 0.00 0.00 0.00 2.29
2022 2365 7.172703 GGAACGGAGGGAGTAATAATTTGTATG 59.827 40.741 0.00 0.00 0.00 2.39
2023 2366 7.369551 ACGGAGGGAGTAATAATTTGTATGA 57.630 36.000 0.00 0.00 0.00 2.15
2024 2367 7.798071 ACGGAGGGAGTAATAATTTGTATGAA 58.202 34.615 0.00 0.00 0.00 2.57
2025 2368 7.931948 ACGGAGGGAGTAATAATTTGTATGAAG 59.068 37.037 0.00 0.00 0.00 3.02
2026 2369 8.148351 CGGAGGGAGTAATAATTTGTATGAAGA 58.852 37.037 0.00 0.00 0.00 2.87
2027 2370 9.495572 GGAGGGAGTAATAATTTGTATGAAGAG 57.504 37.037 0.00 0.00 0.00 2.85
2199 2546 1.774110 TGAGCATGGAGAGGAGAGTC 58.226 55.000 0.00 0.00 0.00 3.36
2361 2708 6.296803 CCCAAAGGTAACAAAGAGAAGTAGT 58.703 40.000 0.00 0.00 41.41 2.73
2413 2761 7.618512 TGCCTATTACTTCTAACCTACTTGAGT 59.381 37.037 0.00 0.00 0.00 3.41
2586 2934 4.459337 AGAAAAATCCCGATGTCAAGGTTC 59.541 41.667 0.00 0.00 0.00 3.62
2608 2956 6.603940 TCCTTCAAATTCCACCCAAATAAG 57.396 37.500 0.00 0.00 0.00 1.73
2721 3071 8.940489 AGTAACATACTCTCTGGTGGTAAACCC 61.940 44.444 0.00 0.00 40.99 4.11
2769 3120 9.302345 GACTTCCTTTGAGTTTTCCTTTAAAAG 57.698 33.333 0.00 0.00 37.74 2.27
2816 3168 7.422399 TGTCAAACTTATGTTCTTTGCCTTAC 58.578 34.615 0.00 0.00 34.96 2.34
2930 3282 7.930217 TGAAGTAATTGAGGTCAGAGTTTTTG 58.070 34.615 0.00 0.00 0.00 2.44
3101 3461 7.412853 TGCTAGTTCTACGTAGTTATACAAGC 58.587 38.462 21.53 19.40 37.78 4.01
3104 3464 7.149569 AGTTCTACGTAGTTATACAAGCACA 57.850 36.000 21.53 0.00 37.78 4.57
3168 3530 3.609853 GGATGTTGTCCTTGCATGAGTA 58.390 45.455 0.00 0.00 44.16 2.59
3251 3613 7.719871 ACTTTCTTAGGACTATTACTGCAGA 57.280 36.000 23.35 0.00 0.00 4.26
3253 3615 5.776173 TCTTAGGACTATTACTGCAGAGC 57.224 43.478 23.35 3.59 0.00 4.09
3318 3682 2.758736 AGATATCAAGCGATGAGGCC 57.241 50.000 5.32 0.00 42.53 5.19
3324 3688 1.003839 AAGCGATGAGGCCGTTGAA 60.004 52.632 0.00 0.00 0.00 2.69
3450 3814 7.047891 TGAGATATCGTCCTTTAGTTGCAAAT 58.952 34.615 4.23 4.23 0.00 2.32
3485 3851 1.918262 AGAAGCTGGGGAATCATGACA 59.082 47.619 0.00 0.00 0.00 3.58
3501 3867 3.959535 TGACACACATCATGCTAGTCA 57.040 42.857 3.28 3.28 36.27 3.41
3524 3891 3.959535 TTTTTCCCTTGGCTTGCTATG 57.040 42.857 0.00 0.00 0.00 2.23
3555 3922 1.079543 CCTGGCGGTCTTCTCTGTG 60.080 63.158 0.00 0.00 0.00 3.66
3579 3946 7.005296 TGGATCTAGACTAGAAATAGTGGGTC 58.995 42.308 16.04 5.95 38.50 4.46
3583 3950 8.896722 TCTAGACTAGAAATAGTGGGTCTTTT 57.103 34.615 9.85 0.00 35.90 2.27
3584 3951 8.968969 TCTAGACTAGAAATAGTGGGTCTTTTC 58.031 37.037 9.85 0.00 35.90 2.29
3586 3953 8.208575 AGACTAGAAATAGTGGGTCTTTTCTT 57.791 34.615 0.00 0.00 36.26 2.52
3619 4175 1.001282 ACGAGGAGGAGGAGGTTAGT 58.999 55.000 0.00 0.00 0.00 2.24
3663 4233 2.653726 AGGACAGTTGTTGTTGCATCA 58.346 42.857 0.00 0.00 41.05 3.07
3693 4263 4.828296 CTCATGTGGGGCCAGGGC 62.828 72.222 4.39 3.77 41.06 5.19
3725 4295 4.158209 CCACCACATAATCTCATTGTTGCA 59.842 41.667 0.00 0.00 0.00 4.08
3726 4296 5.336610 CCACCACATAATCTCATTGTTGCAA 60.337 40.000 0.00 0.00 0.00 4.08
3777 4349 5.745312 TGTCTGTTCTGTTCCTCATATGT 57.255 39.130 1.90 0.00 0.00 2.29
3804 4387 9.657728 AGTGGTTAATAAGTATAGTAGGAAGCT 57.342 33.333 0.00 0.00 0.00 3.74
3850 4433 4.578516 AGTCAGTCGTCTATGAATCAGAGG 59.421 45.833 4.96 0.00 0.00 3.69
3858 4441 4.808364 GTCTATGAATCAGAGGTCAGCAAC 59.192 45.833 4.96 0.00 0.00 4.17
3956 4539 2.182030 CAGAGACCCGAGAACGCC 59.818 66.667 0.00 0.00 38.29 5.68
3977 4560 3.195661 CGGGAAGCTGATAGTGGTAAAC 58.804 50.000 0.00 0.00 0.00 2.01
4011 4597 8.662781 TCTTACAACATGTCATATTTCTAGCC 57.337 34.615 0.00 0.00 0.00 3.93
4053 4639 3.459232 ACATCCAATGACGATCGACAT 57.541 42.857 24.01 24.01 32.43 3.06
4203 4789 0.313672 GACCATTTCCACGCTTTGCA 59.686 50.000 0.00 0.00 0.00 4.08
4220 4806 3.523606 TGCAAAGAAGCTTTTTCTGCA 57.476 38.095 23.10 23.10 34.99 4.41
4221 4807 4.062677 TGCAAAGAAGCTTTTTCTGCAT 57.937 36.364 23.10 1.67 34.99 3.96
4223 4809 4.202182 TGCAAAGAAGCTTTTTCTGCATCT 60.202 37.500 23.10 4.72 39.69 2.90
4226 4812 4.780275 AGAAGCTTTTTCTGCATCTTCC 57.220 40.909 0.00 0.00 35.34 3.46
4286 4874 2.129607 GAAACGAACGCTTGACCTACA 58.870 47.619 0.00 0.00 0.00 2.74
4289 4877 0.038526 CGAACGCTTGACCTACACCT 60.039 55.000 0.00 0.00 0.00 4.00
4291 4879 0.602905 AACGCTTGACCTACACCTGC 60.603 55.000 0.00 0.00 0.00 4.85
4320 4908 9.426837 CTCACATTTTGTTGGTATTGATTGATT 57.573 29.630 0.00 0.00 0.00 2.57
4322 4910 9.205719 CACATTTTGTTGGTATTGATTGATTGA 57.794 29.630 0.00 0.00 0.00 2.57
4323 4911 9.947433 ACATTTTGTTGGTATTGATTGATTGAT 57.053 25.926 0.00 0.00 0.00 2.57
4384 4972 3.109847 TTTTTGGAGGAGCAACGCT 57.890 47.368 0.00 0.00 43.88 5.07
4398 4986 1.796190 AACGCTCGCTCACTCACTCA 61.796 55.000 0.00 0.00 0.00 3.41
4419 5007 2.555757 ACTCAAAGCAGAAATCAGGCAC 59.444 45.455 0.00 0.00 0.00 5.01
4420 5008 2.818432 CTCAAAGCAGAAATCAGGCACT 59.182 45.455 0.00 0.00 43.88 4.40
4428 5017 4.260375 GCAGAAATCAGGCACTTGTATACG 60.260 45.833 0.00 0.00 34.60 3.06
4491 5080 4.142881 GCTTGGTTTATCTCAAGGTTCGAC 60.143 45.833 0.00 0.00 40.31 4.20
4502 5091 2.144482 AGGTTCGACGGTGTTTGTAG 57.856 50.000 0.00 0.00 0.00 2.74
4512 5101 5.164606 ACGGTGTTTGTAGTTTCATTGTC 57.835 39.130 0.00 0.00 0.00 3.18
4519 5108 7.540745 GTGTTTGTAGTTTCATTGTCTTGTTGT 59.459 33.333 0.00 0.00 0.00 3.32
4521 5110 8.372521 GTTTGTAGTTTCATTGTCTTGTTGTTG 58.627 33.333 0.00 0.00 0.00 3.33
4523 5112 5.659440 AGTTTCATTGTCTTGTTGTTGGT 57.341 34.783 0.00 0.00 0.00 3.67
4524 5113 6.767524 AGTTTCATTGTCTTGTTGTTGGTA 57.232 33.333 0.00 0.00 0.00 3.25
4525 5114 6.795399 AGTTTCATTGTCTTGTTGTTGGTAG 58.205 36.000 0.00 0.00 0.00 3.18
4526 5115 5.766150 TTCATTGTCTTGTTGTTGGTAGG 57.234 39.130 0.00 0.00 0.00 3.18
4527 5116 4.787551 TCATTGTCTTGTTGTTGGTAGGT 58.212 39.130 0.00 0.00 0.00 3.08
4528 5117 5.197451 TCATTGTCTTGTTGTTGGTAGGTT 58.803 37.500 0.00 0.00 0.00 3.50
4529 5118 5.298276 TCATTGTCTTGTTGTTGGTAGGTTC 59.702 40.000 0.00 0.00 0.00 3.62
4532 5121 4.062991 GTCTTGTTGTTGGTAGGTTCGAT 58.937 43.478 0.00 0.00 0.00 3.59
4533 5122 4.062293 TCTTGTTGTTGGTAGGTTCGATG 58.938 43.478 0.00 0.00 0.00 3.84
4534 5123 3.478857 TGTTGTTGGTAGGTTCGATGT 57.521 42.857 0.00 0.00 0.00 3.06
4535 5124 3.395639 TGTTGTTGGTAGGTTCGATGTC 58.604 45.455 0.00 0.00 0.00 3.06
4536 5125 2.357327 TGTTGGTAGGTTCGATGTCG 57.643 50.000 0.00 0.00 41.45 4.35
4537 5126 1.614903 TGTTGGTAGGTTCGATGTCGT 59.385 47.619 2.04 0.00 40.80 4.34
4538 5127 2.819019 TGTTGGTAGGTTCGATGTCGTA 59.181 45.455 2.04 0.00 40.80 3.43
4595 5185 7.897575 TTTTTGTTCAGTTTGCAGTGTAATT 57.102 28.000 0.00 0.00 0.00 1.40
4688 5387 6.520272 AGTGAGATGAACTGGCACTATTATC 58.480 40.000 0.00 0.00 37.98 1.75
4698 5397 6.058183 ACTGGCACTATTATCATGGAGAAAC 58.942 40.000 0.00 0.00 0.00 2.78
4740 5439 2.724690 CTGGTGTACTCGACTCGTTTTG 59.275 50.000 0.00 0.00 0.00 2.44
4841 5553 2.457323 TTCGTTGCTTCCACCCCCT 61.457 57.895 0.00 0.00 0.00 4.79
4869 5586 2.273179 CCACCCACGACTCCTCGAA 61.273 63.158 0.00 0.00 43.06 3.71
4876 5593 1.446272 CGACTCCTCGAACCAAGCC 60.446 63.158 0.00 0.00 43.06 4.35
4883 5600 0.040067 CTCGAACCAAGCCAAGCAAC 60.040 55.000 0.00 0.00 0.00 4.17
4926 5654 3.557903 GAGACCAAGCCAGCCAGCA 62.558 63.158 0.00 0.00 34.23 4.41
4927 5655 2.598394 GACCAAGCCAGCCAGCAA 60.598 61.111 0.00 0.00 34.23 3.91
4928 5656 2.599578 ACCAAGCCAGCCAGCAAG 60.600 61.111 0.00 0.00 34.23 4.01
4929 5657 4.065281 CCAAGCCAGCCAGCAAGC 62.065 66.667 0.00 0.00 34.23 4.01
4977 5705 1.513622 GAGACGCAGAGAGAACCCC 59.486 63.158 0.00 0.00 0.00 4.95
4978 5706 2.182030 GACGCAGAGAGAACCCCG 59.818 66.667 0.00 0.00 0.00 5.73
4984 5712 4.097361 GAGAGAACCCCGCCCACC 62.097 72.222 0.00 0.00 0.00 4.61
4998 5726 3.011517 CACCCCCTCCAGGACCAG 61.012 72.222 0.00 0.00 38.24 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 45 0.539438 TGTGGGAATGAACTGTGGGC 60.539 55.000 0.00 0.00 0.00 5.36
47 50 2.489329 GGTCACATGTGGGAATGAACTG 59.511 50.000 25.16 0.00 0.00 3.16
63 89 9.120422 CTTTTTAAACGTGGTATAAATGGTCAC 57.880 33.333 0.00 0.00 0.00 3.67
93 119 9.832445 AACACAAAAGATAAGAGAACTCTGTTA 57.168 29.630 5.06 0.00 40.36 2.41
116 142 4.390603 GTCACGTGTGCTCCATAAATAACA 59.609 41.667 16.51 0.00 0.00 2.41
189 215 5.275067 TGACTGGGATTTTTGTTCCTTTG 57.725 39.130 0.00 0.00 33.53 2.77
253 282 5.291971 AGAATCCATGTGTTTGTGCTTTTC 58.708 37.500 0.00 0.00 0.00 2.29
258 287 8.810427 CAATTAATAGAATCCATGTGTTTGTGC 58.190 33.333 0.00 0.00 0.00 4.57
289 318 6.493449 TGTTTTCTTGATGAATGCGTATGA 57.507 33.333 0.00 0.00 34.24 2.15
295 324 5.849357 TGCAATGTTTTCTTGATGAATGC 57.151 34.783 0.00 0.00 36.65 3.56
327 356 5.914033 TCAATTCTCCCTGTTCTTATACCG 58.086 41.667 0.00 0.00 0.00 4.02
355 384 8.462589 TGTACCGAAAATTAAGTTTAGGGTTT 57.537 30.769 24.81 11.58 37.01 3.27
358 387 8.326680 TCTTGTACCGAAAATTAAGTTTAGGG 57.673 34.615 24.81 19.09 34.12 3.53
401 431 1.417372 ATTTGTTTCATGCGCAACGG 58.583 45.000 17.11 7.56 0.00 4.44
402 432 3.233578 AGTATTTGTTTCATGCGCAACG 58.766 40.909 17.11 9.38 0.00 4.10
408 438 8.454106 ACAAGAGTATGAGTATTTGTTTCATGC 58.546 33.333 0.00 0.00 35.16 4.06
423 453 7.884257 TGCAAATTTTCATCACAAGAGTATGA 58.116 30.769 0.00 0.00 0.00 2.15
425 456 8.308931 ACATGCAAATTTTCATCACAAGAGTAT 58.691 29.630 0.00 0.00 0.00 2.12
442 473 9.153721 CATGTTTGGAGTTTATAACATGCAAAT 57.846 29.630 14.74 2.95 45.99 2.32
478 509 2.582728 AATATGTGCCGGCATTTGTG 57.417 45.000 35.23 0.00 0.00 3.33
488 519 5.323371 TGCAGGTTCTAAAAATATGTGCC 57.677 39.130 0.00 0.00 0.00 5.01
530 561 2.807676 CCTGGCCAGGTTTTGAATAGT 58.192 47.619 39.52 0.00 43.61 2.12
558 589 8.623030 TGCTAGAGTTTACAAAAACCGTTTATT 58.377 29.630 0.00 0.00 45.11 1.40
571 602 9.196552 CATTCATATTCGATGCTAGAGTTTACA 57.803 33.333 0.00 0.00 0.00 2.41
572 603 8.165428 GCATTCATATTCGATGCTAGAGTTTAC 58.835 37.037 0.00 0.00 35.55 2.01
573 604 7.331934 GGCATTCATATTCGATGCTAGAGTTTA 59.668 37.037 12.07 0.00 38.24 2.01
576 607 5.174395 GGCATTCATATTCGATGCTAGAGT 58.826 41.667 12.07 0.00 38.24 3.24
577 608 4.569966 GGGCATTCATATTCGATGCTAGAG 59.430 45.833 12.07 0.00 38.24 2.43
584 617 4.090761 AGTGTGGGCATTCATATTCGAT 57.909 40.909 0.00 0.00 0.00 3.59
611 644 1.822990 CCGGCAAGGTAGTACAGAGAA 59.177 52.381 2.06 0.00 34.51 2.87
612 645 1.471119 CCGGCAAGGTAGTACAGAGA 58.529 55.000 2.06 0.00 34.51 3.10
624 657 4.576053 TCAATCTATTCATCAACCGGCAAG 59.424 41.667 0.00 0.00 0.00 4.01
625 658 4.522114 TCAATCTATTCATCAACCGGCAA 58.478 39.130 0.00 0.00 0.00 4.52
626 659 4.149511 TCAATCTATTCATCAACCGGCA 57.850 40.909 0.00 0.00 0.00 5.69
627 660 5.066505 ACTTTCAATCTATTCATCAACCGGC 59.933 40.000 0.00 0.00 0.00 6.13
628 661 6.683974 ACTTTCAATCTATTCATCAACCGG 57.316 37.500 0.00 0.00 0.00 5.28
629 662 8.970691 AAAACTTTCAATCTATTCATCAACCG 57.029 30.769 0.00 0.00 0.00 4.44
634 667 9.004146 GCGAGAAAAACTTTCAATCTATTCATC 57.996 33.333 2.25 0.00 0.00 2.92
635 668 7.970614 GGCGAGAAAAACTTTCAATCTATTCAT 59.029 33.333 2.25 0.00 0.00 2.57
636 669 7.040755 TGGCGAGAAAAACTTTCAATCTATTCA 60.041 33.333 2.25 0.00 0.00 2.57
637 670 7.305474 TGGCGAGAAAAACTTTCAATCTATTC 58.695 34.615 2.25 0.00 0.00 1.75
638 671 7.214467 TGGCGAGAAAAACTTTCAATCTATT 57.786 32.000 2.25 0.00 0.00 1.73
639 672 6.817765 TGGCGAGAAAAACTTTCAATCTAT 57.182 33.333 2.25 0.00 0.00 1.98
640 673 6.627395 TTGGCGAGAAAAACTTTCAATCTA 57.373 33.333 2.25 0.00 0.00 1.98
641 674 5.514274 TTGGCGAGAAAAACTTTCAATCT 57.486 34.783 2.25 0.00 0.00 2.40
642 675 6.582437 TTTTGGCGAGAAAAACTTTCAATC 57.418 33.333 2.25 0.00 0.00 2.67
643 676 6.976636 TTTTTGGCGAGAAAAACTTTCAAT 57.023 29.167 2.25 0.00 31.39 2.57
684 717 2.114625 AGTGGGACCGAGACACGA 59.885 61.111 0.00 0.00 45.77 4.35
693 726 1.078143 GATCAGCCACAGTGGGACC 60.078 63.158 21.77 4.61 38.19 4.46
700 733 0.249784 CCGAGGATGATCAGCCACAG 60.250 60.000 30.59 19.88 39.89 3.66
774 807 9.083422 CACCAGATATCTCTTCTCCACTAATAA 57.917 37.037 1.03 0.00 0.00 1.40
775 808 8.228206 ACACCAGATATCTCTTCTCCACTAATA 58.772 37.037 1.03 0.00 0.00 0.98
776 809 7.015098 CACACCAGATATCTCTTCTCCACTAAT 59.985 40.741 1.03 0.00 0.00 1.73
902 1199 2.110543 GGGATGGAAATGGATGGATGGA 59.889 50.000 0.00 0.00 0.00 3.41
905 1202 2.381275 GAGGGGATGGAAATGGATGGAT 59.619 50.000 0.00 0.00 0.00 3.41
914 1211 0.981277 GGTCTCGGAGGGGATGGAAA 60.981 60.000 4.96 0.00 0.00 3.13
927 1224 1.216710 GTCTGCCTTCTGGGTCTCG 59.783 63.158 0.00 0.00 37.43 4.04
930 1227 2.266055 CCGTCTGCCTTCTGGGTC 59.734 66.667 0.00 0.00 37.43 4.46
931 1228 4.021925 GCCGTCTGCCTTCTGGGT 62.022 66.667 0.00 0.00 37.43 4.51
949 1246 2.359850 TTCGCTGGGTGTGATGGC 60.360 61.111 0.00 0.00 34.87 4.40
996 1297 4.778143 GTCCACGGCGCCATCCTT 62.778 66.667 28.98 0.79 0.00 3.36
1304 1605 1.988406 AACCCCGCTACTCCTGACC 60.988 63.158 0.00 0.00 0.00 4.02
1332 1633 1.220206 GCAAGCTCTAGGCAGCAGA 59.780 57.895 6.24 0.00 42.40 4.26
1338 1639 1.165284 GGCATCAGCAAGCTCTAGGC 61.165 60.000 0.00 0.00 44.61 3.93
1349 1656 1.214589 CAGGCTTTGTGGCATCAGC 59.785 57.895 6.91 6.91 44.55 4.26
1397 1704 7.741027 TTGAGATATGATGAAAGAAGGATGC 57.259 36.000 0.00 0.00 0.00 3.91
1460 1767 9.246670 TCTGAGATGGATGATGTTTTGTTTAAT 57.753 29.630 0.00 0.00 0.00 1.40
1461 1768 8.634335 TCTGAGATGGATGATGTTTTGTTTAA 57.366 30.769 0.00 0.00 0.00 1.52
1462 1769 7.884877 ACTCTGAGATGGATGATGTTTTGTTTA 59.115 33.333 12.44 0.00 0.00 2.01
1479 1786 2.567615 ACGGGTGCTTAAACTCTGAGAT 59.432 45.455 12.44 0.00 0.00 2.75
1485 1795 2.338500 CTGAGACGGGTGCTTAAACTC 58.662 52.381 0.00 0.00 0.00 3.01
1487 1797 1.001633 TCCTGAGACGGGTGCTTAAAC 59.998 52.381 0.00 0.00 0.00 2.01
1577 1893 2.280797 GCGACACAGCCCTTGACA 60.281 61.111 0.00 0.00 0.00 3.58
1634 1950 6.268158 TGTTATGTAACCTGTCCTTGACACTA 59.732 38.462 0.82 0.00 35.13 2.74
1656 1972 2.641815 AGGAGGCAGATGAGAAGTTGTT 59.358 45.455 0.00 0.00 0.00 2.83
1661 1977 1.792115 AGGAGGAGGCAGATGAGAAG 58.208 55.000 0.00 0.00 0.00 2.85
1666 1982 1.558756 ACTGAAAGGAGGAGGCAGATG 59.441 52.381 0.00 0.00 39.30 2.90
1669 1985 0.689623 ACACTGAAAGGAGGAGGCAG 59.310 55.000 0.00 0.00 39.30 4.85
1670 1986 1.140312 AACACTGAAAGGAGGAGGCA 58.860 50.000 0.00 0.00 39.30 4.75
1671 1987 2.155279 GAAACACTGAAAGGAGGAGGC 58.845 52.381 0.00 0.00 39.30 4.70
1679 1995 5.034797 GGGAAGAAAACGAAACACTGAAAG 58.965 41.667 0.00 0.00 42.29 2.62
1744 2064 9.956640 GAAATCATACTGATTCCTATCCTGAAT 57.043 33.333 3.03 0.00 45.57 2.57
1789 2109 3.067684 ACCTTTCCGGGTGTTATCAAG 57.932 47.619 0.00 0.00 38.30 3.02
1813 2133 7.308830 GGAACATGAAAAGAAGTCAGCAAGTAT 60.309 37.037 0.00 0.00 0.00 2.12
1814 2134 6.017109 GGAACATGAAAAGAAGTCAGCAAGTA 60.017 38.462 0.00 0.00 0.00 2.24
1818 2161 4.464008 AGGAACATGAAAAGAAGTCAGCA 58.536 39.130 0.00 0.00 0.00 4.41
1823 2166 7.888250 AAAGAGAAGGAACATGAAAAGAAGT 57.112 32.000 0.00 0.00 0.00 3.01
1831 2174 6.043243 AGGAGTACAAAAGAGAAGGAACATGA 59.957 38.462 0.00 0.00 0.00 3.07
1832 2175 6.234177 AGGAGTACAAAAGAGAAGGAACATG 58.766 40.000 0.00 0.00 0.00 3.21
1833 2176 6.441088 AGGAGTACAAAAGAGAAGGAACAT 57.559 37.500 0.00 0.00 0.00 2.71
1834 2177 5.888982 AGGAGTACAAAAGAGAAGGAACA 57.111 39.130 0.00 0.00 0.00 3.18
1835 2178 5.701750 GGAAGGAGTACAAAAGAGAAGGAAC 59.298 44.000 0.00 0.00 0.00 3.62
1836 2179 5.607171 AGGAAGGAGTACAAAAGAGAAGGAA 59.393 40.000 0.00 0.00 0.00 3.36
1838 2181 5.491323 AGGAAGGAGTACAAAAGAGAAGG 57.509 43.478 0.00 0.00 0.00 3.46
1841 2184 7.138054 AGAAAAGGAAGGAGTACAAAAGAGA 57.862 36.000 0.00 0.00 0.00 3.10
1842 2185 8.904099 TTAGAAAAGGAAGGAGTACAAAAGAG 57.096 34.615 0.00 0.00 0.00 2.85
1843 2186 9.862149 ATTTAGAAAAGGAAGGAGTACAAAAGA 57.138 29.630 0.00 0.00 0.00 2.52
1851 2194 7.999545 GGGCTTATATTTAGAAAAGGAAGGAGT 59.000 37.037 0.00 0.00 0.00 3.85
1852 2195 8.221251 AGGGCTTATATTTAGAAAAGGAAGGAG 58.779 37.037 0.00 0.00 0.00 3.69
1853 2196 8.114301 AGGGCTTATATTTAGAAAAGGAAGGA 57.886 34.615 0.00 0.00 0.00 3.36
1872 2215 8.961634 GTTCTATTGAAATCTCTAAAAGGGCTT 58.038 33.333 0.00 0.00 33.52 4.35
1873 2216 8.332487 AGTTCTATTGAAATCTCTAAAAGGGCT 58.668 33.333 0.00 0.00 33.52 5.19
1874 2217 8.512966 AGTTCTATTGAAATCTCTAAAAGGGC 57.487 34.615 0.00 0.00 33.52 5.19
1882 2225 9.132923 TCCGTATGTAGTTCTATTGAAATCTCT 57.867 33.333 0.00 0.00 33.52 3.10
1883 2226 9.915629 ATCCGTATGTAGTTCTATTGAAATCTC 57.084 33.333 0.00 0.00 33.52 2.75
1884 2227 9.698309 CATCCGTATGTAGTTCTATTGAAATCT 57.302 33.333 0.00 0.00 33.52 2.40
1885 2228 9.477484 ACATCCGTATGTAGTTCTATTGAAATC 57.523 33.333 0.00 0.00 44.66 2.17
1886 2229 9.832445 AACATCCGTATGTAGTTCTATTGAAAT 57.168 29.630 0.00 0.00 45.79 2.17
1887 2230 9.661563 AAACATCCGTATGTAGTTCTATTGAAA 57.338 29.630 0.00 0.00 45.79 2.69
1894 2237 9.128404 TGTCTATAAACATCCGTATGTAGTTCT 57.872 33.333 0.00 0.00 45.79 3.01
1895 2238 9.909644 ATGTCTATAAACATCCGTATGTAGTTC 57.090 33.333 0.00 0.00 45.79 3.01
1930 2273 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1931 2274 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1932 2275 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1933 2276 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1934 2277 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1935 2278 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1936 2279 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1937 2280 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1938 2281 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1939 2282 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1940 2283 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1941 2284 5.352284 AGACTACATACGGAGCAAAATGAG 58.648 41.667 0.00 0.00 0.00 2.90
1942 2285 5.339008 AGACTACATACGGAGCAAAATGA 57.661 39.130 0.00 0.00 0.00 2.57
1943 2286 8.988064 ATATAGACTACATACGGAGCAAAATG 57.012 34.615 0.00 0.00 0.00 2.32
1944 2287 9.424319 CAATATAGACTACATACGGAGCAAAAT 57.576 33.333 0.00 0.00 0.00 1.82
1945 2288 8.635328 TCAATATAGACTACATACGGAGCAAAA 58.365 33.333 0.00 0.00 0.00 2.44
1946 2289 8.173542 TCAATATAGACTACATACGGAGCAAA 57.826 34.615 0.00 0.00 0.00 3.68
1947 2290 7.754851 TCAATATAGACTACATACGGAGCAA 57.245 36.000 0.00 0.00 0.00 3.91
1948 2291 7.754851 TTCAATATAGACTACATACGGAGCA 57.245 36.000 0.00 0.00 0.00 4.26
1949 2292 9.291664 GATTTCAATATAGACTACATACGGAGC 57.708 37.037 0.00 0.00 0.00 4.70
1976 2319 9.075678 CCGTTCCTAAATATAAGACCTTCTAGA 57.924 37.037 0.00 0.00 0.00 2.43
1977 2320 9.075678 TCCGTTCCTAAATATAAGACCTTCTAG 57.924 37.037 0.00 0.00 0.00 2.43
1978 2321 9.075678 CTCCGTTCCTAAATATAAGACCTTCTA 57.924 37.037 0.00 0.00 0.00 2.10
1979 2322 7.015389 CCTCCGTTCCTAAATATAAGACCTTCT 59.985 40.741 0.00 0.00 0.00 2.85
1980 2323 7.153315 CCTCCGTTCCTAAATATAAGACCTTC 58.847 42.308 0.00 0.00 0.00 3.46
1981 2324 6.042897 CCCTCCGTTCCTAAATATAAGACCTT 59.957 42.308 0.00 0.00 0.00 3.50
1982 2325 5.543020 CCCTCCGTTCCTAAATATAAGACCT 59.457 44.000 0.00 0.00 0.00 3.85
1983 2326 5.541484 TCCCTCCGTTCCTAAATATAAGACC 59.459 44.000 0.00 0.00 0.00 3.85
1984 2327 6.267242 ACTCCCTCCGTTCCTAAATATAAGAC 59.733 42.308 0.00 0.00 0.00 3.01
1985 2328 6.379579 ACTCCCTCCGTTCCTAAATATAAGA 58.620 40.000 0.00 0.00 0.00 2.10
1986 2329 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1987 2330 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
1988 2331 9.827198 TTATTACTCCCTCCGTTCCTAAATATA 57.173 33.333 0.00 0.00 0.00 0.86
1989 2332 8.731591 TTATTACTCCCTCCGTTCCTAAATAT 57.268 34.615 0.00 0.00 0.00 1.28
1990 2333 8.731591 ATTATTACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
1991 2334 7.628501 ATTATTACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
1992 2335 7.441903 AATTATTACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
1993 2336 7.092757 ACAAATTATTACTCCCTCCGTTCCTAA 60.093 37.037 0.00 0.00 0.00 2.69
1994 2337 6.384886 ACAAATTATTACTCCCTCCGTTCCTA 59.615 38.462 0.00 0.00 0.00 2.94
1995 2338 5.191124 ACAAATTATTACTCCCTCCGTTCCT 59.809 40.000 0.00 0.00 0.00 3.36
1996 2339 5.434408 ACAAATTATTACTCCCTCCGTTCC 58.566 41.667 0.00 0.00 0.00 3.62
1997 2340 7.929785 TCATACAAATTATTACTCCCTCCGTTC 59.070 37.037 0.00 0.00 0.00 3.95
1998 2341 7.798071 TCATACAAATTATTACTCCCTCCGTT 58.202 34.615 0.00 0.00 0.00 4.44
1999 2342 7.369551 TCATACAAATTATTACTCCCTCCGT 57.630 36.000 0.00 0.00 0.00 4.69
2000 2343 8.148351 TCTTCATACAAATTATTACTCCCTCCG 58.852 37.037 0.00 0.00 0.00 4.63
2001 2344 9.495572 CTCTTCATACAAATTATTACTCCCTCC 57.504 37.037 0.00 0.00 0.00 4.30
2051 2394 7.002879 AGCAGAGAACAGGAATTAATATGCAT 58.997 34.615 3.79 3.79 0.00 3.96
2361 2708 7.829706 ACACTTACATAGAGTAGAGACACATGA 59.170 37.037 0.00 0.00 33.43 3.07
2586 2934 6.603940 TCTTATTTGGGTGGAATTTGAAGG 57.396 37.500 0.00 0.00 0.00 3.46
2721 3071 6.313905 AGTCTTTTCTGATAGCAAACATACCG 59.686 38.462 0.00 0.00 0.00 4.02
2769 3120 4.489306 AGCCCAAAGGTAGTATGTCTTC 57.511 45.455 0.00 0.00 34.57 2.87
2780 3132 2.159179 AGTTTGACAAGCCCAAAGGT 57.841 45.000 0.00 0.00 34.59 3.50
2787 3139 5.175673 GCAAAGAACATAAGTTTGACAAGCC 59.824 40.000 0.00 0.00 38.30 4.35
2816 3168 3.370978 CCTACACAAGCGGATAACAGTTG 59.629 47.826 0.00 0.00 0.00 3.16
2930 3282 6.026947 AGGTGAAATATACTGACGGATAGC 57.973 41.667 0.00 0.00 0.00 2.97
3101 3461 8.347771 ACAATAGAACTAGCATATGCAATTGTG 58.652 33.333 28.62 15.61 45.16 3.33
3104 3464 7.503566 ACCACAATAGAACTAGCATATGCAATT 59.496 33.333 28.62 18.61 45.16 2.32
3168 3530 3.117963 CAGAGCAAAAGGAGGGATGATCT 60.118 47.826 0.00 0.00 38.95 2.75
3209 3571 5.783875 AGAAAGTAGTACCACACAACCCTAT 59.216 40.000 0.00 0.00 0.00 2.57
3318 3682 2.193306 ACTGCTTTGCTGTTTCAACG 57.807 45.000 0.00 0.00 37.43 4.10
3466 3830 2.019984 GTGTCATGATTCCCCAGCTTC 58.980 52.381 0.00 0.00 0.00 3.86
3471 3837 2.308275 TGATGTGTGTCATGATTCCCCA 59.692 45.455 0.00 0.00 36.83 4.96
3524 3891 1.076332 CGCCAGGTGCTTACACTTAC 58.924 55.000 0.00 0.00 46.57 2.34
3555 3922 7.235804 AGACCCACTATTTCTAGTCTAGATCC 58.764 42.308 10.43 0.00 35.99 3.36
3579 3946 7.644551 CCTCGTGCATAGTAGTACTAAGAAAAG 59.355 40.741 13.92 5.86 33.89 2.27
3583 3950 5.922053 TCCTCGTGCATAGTAGTACTAAGA 58.078 41.667 13.92 7.95 33.89 2.10
3584 3951 5.179742 CCTCCTCGTGCATAGTAGTACTAAG 59.820 48.000 13.92 10.77 33.89 2.18
3586 3953 4.346127 TCCTCCTCGTGCATAGTAGTACTA 59.654 45.833 12.38 12.38 34.82 1.82
3619 4175 3.315949 GTACCACCTGCCCACCGA 61.316 66.667 0.00 0.00 0.00 4.69
3693 4263 3.637229 AGATTATGTGGTGGTCTCCTACG 59.363 47.826 0.00 0.00 0.00 3.51
3741 4311 8.484641 ACAGAACAGACATACATATGAACAAG 57.515 34.615 10.38 0.00 37.15 3.16
3757 4329 6.127338 CCACTACATATGAGGAACAGAACAGA 60.127 42.308 10.38 0.00 0.00 3.41
3850 4433 1.620822 ATTGGTTCAGGGTTGCTGAC 58.379 50.000 0.00 0.00 0.00 3.51
3858 4441 8.868522 ACATACATTCATATATTGGTTCAGGG 57.131 34.615 0.00 0.00 0.00 4.45
3867 4450 8.696043 ACCTGCACAACATACATTCATATATT 57.304 30.769 0.00 0.00 0.00 1.28
3956 4539 3.195661 GTTTACCACTATCAGCTTCCCG 58.804 50.000 0.00 0.00 0.00 5.14
3977 4560 3.002791 ACATGTTGTAAGATCAGCGGTG 58.997 45.455 8.67 8.67 0.00 4.94
4011 4597 7.969536 TGTTTTCAAGAGAAGAGTTCTATGG 57.030 36.000 0.00 0.00 40.87 2.74
4053 4639 3.856521 CACAAAACAAACAGCAATGTCGA 59.143 39.130 0.00 0.00 0.00 4.20
4062 4648 0.294304 CGCGCACACAAAACAAACAG 59.706 50.000 8.75 0.00 0.00 3.16
4200 4786 3.523606 TGCAGAAAAAGCTTCTTTGCA 57.476 38.095 17.66 17.66 34.99 4.08
4220 4806 1.477295 GGTTCGACGGAAGAGGAAGAT 59.523 52.381 0.00 0.00 31.49 2.40
4221 4807 0.886563 GGTTCGACGGAAGAGGAAGA 59.113 55.000 0.00 0.00 31.49 2.87
4223 4809 0.890542 TCGGTTCGACGGAAGAGGAA 60.891 55.000 0.00 0.00 31.49 3.36
4226 4812 2.838386 TATTCGGTTCGACGGAAGAG 57.162 50.000 0.00 0.00 40.07 2.85
4286 4874 0.823356 ACAAAATGTGAGCGGCAGGT 60.823 50.000 1.45 0.00 0.00 4.00
4289 4877 0.031857 CCAACAAAATGTGAGCGGCA 59.968 50.000 1.45 0.00 0.00 5.69
4291 4879 3.848272 ATACCAACAAAATGTGAGCGG 57.152 42.857 0.00 0.00 0.00 5.52
4323 4911 9.942850 CCTTACAACCATGTGTATCATCATATA 57.057 33.333 0.00 0.00 40.84 0.86
4324 4912 8.659527 TCCTTACAACCATGTGTATCATCATAT 58.340 33.333 0.00 0.00 40.84 1.78
4325 4913 8.028652 TCCTTACAACCATGTGTATCATCATA 57.971 34.615 0.00 0.00 40.84 2.15
4336 4924 7.589958 TGTAATTGTTTCCTTACAACCATGT 57.410 32.000 0.00 0.00 40.53 3.21
4381 4969 1.799519 GTGAGTGAGTGAGCGAGCG 60.800 63.158 0.00 0.00 0.00 5.03
4382 4970 0.455972 GAGTGAGTGAGTGAGCGAGC 60.456 60.000 0.00 0.00 0.00 5.03
4383 4971 0.877743 TGAGTGAGTGAGTGAGCGAG 59.122 55.000 0.00 0.00 0.00 5.03
4384 4972 1.318576 TTGAGTGAGTGAGTGAGCGA 58.681 50.000 0.00 0.00 0.00 4.93
4398 4986 2.555757 GTGCCTGATTTCTGCTTTGAGT 59.444 45.455 0.00 0.00 0.00 3.41
4471 5060 3.581755 CGTCGAACCTTGAGATAAACCA 58.418 45.455 0.00 0.00 0.00 3.67
4474 5063 3.006110 ACACCGTCGAACCTTGAGATAAA 59.994 43.478 0.00 0.00 0.00 1.40
4482 5071 2.159057 ACTACAAACACCGTCGAACCTT 60.159 45.455 0.00 0.00 0.00 3.50
4491 5080 5.418310 AGACAATGAAACTACAAACACCG 57.582 39.130 0.00 0.00 0.00 4.94
4502 5091 5.977129 CCTACCAACAACAAGACAATGAAAC 59.023 40.000 0.00 0.00 0.00 2.78
4512 5101 3.813166 ACATCGAACCTACCAACAACAAG 59.187 43.478 0.00 0.00 0.00 3.16
4519 5108 4.724074 ATTACGACATCGAACCTACCAA 57.276 40.909 8.54 0.00 43.02 3.67
4521 5110 7.588512 ACTATTATTACGACATCGAACCTACC 58.411 38.462 8.54 0.00 43.02 3.18
4524 5113 8.295288 CCTTACTATTATTACGACATCGAACCT 58.705 37.037 8.54 0.00 43.02 3.50
4525 5114 8.292448 TCCTTACTATTATTACGACATCGAACC 58.708 37.037 8.54 0.00 43.02 3.62
4526 5115 9.669353 TTCCTTACTATTATTACGACATCGAAC 57.331 33.333 8.54 0.00 43.02 3.95
4576 5166 4.844267 ACGAATTACACTGCAAACTGAAC 58.156 39.130 0.00 0.00 0.00 3.18
4669 5368 6.233434 TCCATGATAATAGTGCCAGTTCATC 58.767 40.000 0.00 0.00 0.00 2.92
4677 5376 6.291377 TGAGTTTCTCCATGATAATAGTGCC 58.709 40.000 0.00 0.00 0.00 5.01
4719 5418 2.701073 AAACGAGTCGAGTACACCAG 57.299 50.000 21.50 0.00 0.00 4.00
4725 5424 2.101249 ACCCAACAAAACGAGTCGAGTA 59.899 45.455 21.50 0.00 0.00 2.59
4726 5425 1.134610 ACCCAACAAAACGAGTCGAGT 60.135 47.619 21.50 9.06 0.00 4.18
4727 5426 1.525619 GACCCAACAAAACGAGTCGAG 59.474 52.381 21.50 8.41 0.00 4.04
4728 5427 1.574134 GACCCAACAAAACGAGTCGA 58.426 50.000 21.50 0.00 0.00 4.20
4729 5428 0.231279 CGACCCAACAAAACGAGTCG 59.769 55.000 11.85 11.85 40.76 4.18
4730 5429 1.292992 ACGACCCAACAAAACGAGTC 58.707 50.000 0.00 0.00 0.00 3.36
4841 5553 4.348495 GTGGGTGGGAGAGGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
4869 5586 3.605664 GCGGTTGCTTGGCTTGGT 61.606 61.111 0.00 0.00 38.39 3.67
4929 5657 4.394712 GGGATCCGCCGCCTATGG 62.395 72.222 5.45 0.00 37.63 2.74
4964 5692 4.475135 GGGCGGGGTTCTCTCTGC 62.475 72.222 0.00 0.00 34.72 4.26
4984 5712 2.366167 CTCCTGGTCCTGGAGGGG 60.366 72.222 29.13 7.97 43.10 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.