Multiple sequence alignment - TraesCS3B01G102000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G102000 chr3B 100.000 2576 0 0 1 2576 68592361 68594936 0.000000e+00 4758.0
1 TraesCS3B01G102000 chr3B 93.939 165 8 2 82 244 415934240 415934404 5.500000e-62 248.0
2 TraesCS3B01G102000 chr3B 84.000 75 12 0 1788 1862 143073570 143073644 3.560000e-09 73.1
3 TraesCS3B01G102000 chr3D 92.974 854 51 5 978 1826 43809475 43810324 0.000000e+00 1236.0
4 TraesCS3B01G102000 chr3D 91.111 675 50 8 314 983 43808767 43809436 0.000000e+00 905.0
5 TraesCS3B01G102000 chr3D 93.939 165 8 2 82 244 264712281 264712117 5.500000e-62 248.0
6 TraesCS3B01G102000 chr3D 77.316 313 48 13 2286 2576 451925985 451926296 2.050000e-36 163.0
7 TraesCS3B01G102000 chr3A 87.986 849 60 22 881 1717 55743008 55743826 0.000000e+00 965.0
8 TraesCS3B01G102000 chr3A 89.804 510 47 3 2064 2572 55769927 55770432 0.000000e+00 649.0
9 TraesCS3B01G102000 chr3A 85.846 544 51 12 316 839 55742474 55743011 2.900000e-154 555.0
10 TraesCS3B01G102000 chr3A 80.811 740 111 18 1857 2573 123901853 123902584 3.750000e-153 551.0
11 TraesCS3B01G102000 chr3A 82.143 644 102 11 1935 2573 69263718 69264353 8.110000e-150 540.0
12 TraesCS3B01G102000 chr5D 82.070 831 106 20 1768 2573 477957395 477958207 0.000000e+00 669.0
13 TraesCS3B01G102000 chr5D 83.910 578 78 11 1857 2427 430167728 430168297 2.920000e-149 538.0
14 TraesCS3B01G102000 chr5D 93.939 165 8 2 82 244 67584764 67584600 5.500000e-62 248.0
15 TraesCS3B01G102000 chr5D 93.373 166 9 2 82 245 277243103 277243268 7.120000e-61 244.0
16 TraesCS3B01G102000 chr1D 83.425 724 99 18 1863 2576 372566743 372566031 0.000000e+00 652.0
17 TraesCS3B01G102000 chr5B 85.333 600 77 10 1857 2451 308538416 308539009 6.090000e-171 610.0
18 TraesCS3B01G102000 chr5B 84.559 136 18 2 2439 2573 423354077 423354210 5.780000e-27 132.0
19 TraesCS3B01G102000 chr5B 83.696 92 12 2 1763 1851 461872477 461872568 1.640000e-12 84.2
20 TraesCS3B01G102000 chr4D 80.599 835 115 32 1767 2576 49517732 49516920 3.670000e-168 601.0
21 TraesCS3B01G102000 chr7D 84.375 608 86 7 1857 2461 348188745 348188144 2.860000e-164 588.0
22 TraesCS3B01G102000 chr7D 82.759 609 87 12 1862 2459 7665989 7666590 6.310000e-146 527.0
23 TraesCS3B01G102000 chr7D 77.818 275 50 8 387 659 571485350 571485085 2.650000e-35 159.0
24 TraesCS3B01G102000 chr4B 82.815 611 95 7 1857 2461 452737601 452736995 2.920000e-149 538.0
25 TraesCS3B01G102000 chr6D 91.005 189 14 3 82 267 85799999 85800187 4.260000e-63 252.0
26 TraesCS3B01G102000 chr7B 94.479 163 7 2 82 242 524237653 524237815 1.530000e-62 250.0
27 TraesCS3B01G102000 chr7B 84.906 106 15 1 2472 2576 33131638 33131743 3.510000e-19 106.0
28 TraesCS3B01G102000 chr5A 93.373 166 9 2 82 245 366234818 366234983 7.120000e-61 244.0
29 TraesCS3B01G102000 chr5A 91.781 73 6 0 561 633 512024434 512024362 4.530000e-18 102.0
30 TraesCS3B01G102000 chr5A 84.783 92 11 2 1763 1851 219308829 219308920 3.530000e-14 89.8
31 TraesCS3B01G102000 chr5A 84.884 86 10 2 1769 1851 169806558 169806473 1.640000e-12 84.2
32 TraesCS3B01G102000 chr2A 93.373 166 9 2 82 245 606517544 606517379 7.120000e-61 244.0
33 TraesCS3B01G102000 chr1B 93.373 166 9 2 82 245 609414741 609414906 7.120000e-61 244.0
34 TraesCS3B01G102000 chr1B 90.991 111 9 1 2467 2576 513146185 513146075 5.740000e-32 148.0
35 TraesCS3B01G102000 chr1B 83.803 142 21 2 1861 2001 575920390 575920530 1.610000e-27 134.0
36 TraesCS3B01G102000 chr1B 83.962 106 16 1 2472 2576 56274726 56274621 1.630000e-17 100.0
37 TraesCS3B01G102000 chr2D 80.471 297 38 9 1765 2042 447344152 447343857 2.600000e-50 209.0
38 TraesCS3B01G102000 chr2D 85.849 106 14 1 2472 2576 52082115 52082220 7.530000e-21 111.0
39 TraesCS3B01G102000 chr7A 82.511 223 36 3 448 669 101855582 101855802 2.620000e-45 193.0
40 TraesCS3B01G102000 chr4A 75.758 264 52 9 385 646 704470416 704470669 3.480000e-24 122.0
41 TraesCS3B01G102000 chr6B 84.545 110 16 1 2468 2576 260113066 260112957 9.750000e-20 108.0
42 TraesCS3B01G102000 chr6B 83.871 93 10 4 1763 1851 705174491 705174582 1.640000e-12 84.2
43 TraesCS3B01G102000 chrUn 86.747 83 9 2 1771 1851 7481381 7481299 9.820000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G102000 chr3B 68592361 68594936 2575 False 4758.0 4758 100.0000 1 2576 1 chr3B.!!$F1 2575
1 TraesCS3B01G102000 chr3D 43808767 43810324 1557 False 1070.5 1236 92.0425 314 1826 2 chr3D.!!$F2 1512
2 TraesCS3B01G102000 chr3A 55742474 55743826 1352 False 760.0 965 86.9160 316 1717 2 chr3A.!!$F4 1401
3 TraesCS3B01G102000 chr3A 55769927 55770432 505 False 649.0 649 89.8040 2064 2572 1 chr3A.!!$F1 508
4 TraesCS3B01G102000 chr3A 123901853 123902584 731 False 551.0 551 80.8110 1857 2573 1 chr3A.!!$F3 716
5 TraesCS3B01G102000 chr3A 69263718 69264353 635 False 540.0 540 82.1430 1935 2573 1 chr3A.!!$F2 638
6 TraesCS3B01G102000 chr5D 477957395 477958207 812 False 669.0 669 82.0700 1768 2573 1 chr5D.!!$F3 805
7 TraesCS3B01G102000 chr5D 430167728 430168297 569 False 538.0 538 83.9100 1857 2427 1 chr5D.!!$F2 570
8 TraesCS3B01G102000 chr1D 372566031 372566743 712 True 652.0 652 83.4250 1863 2576 1 chr1D.!!$R1 713
9 TraesCS3B01G102000 chr5B 308538416 308539009 593 False 610.0 610 85.3330 1857 2451 1 chr5B.!!$F1 594
10 TraesCS3B01G102000 chr4D 49516920 49517732 812 True 601.0 601 80.5990 1767 2576 1 chr4D.!!$R1 809
11 TraesCS3B01G102000 chr7D 348188144 348188745 601 True 588.0 588 84.3750 1857 2461 1 chr7D.!!$R1 604
12 TraesCS3B01G102000 chr7D 7665989 7666590 601 False 527.0 527 82.7590 1862 2459 1 chr7D.!!$F1 597
13 TraesCS3B01G102000 chr4B 452736995 452737601 606 True 538.0 538 82.8150 1857 2461 1 chr4B.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.107643 TGACAACTCATGGTTCGGCA 59.892 50.0 0.0 0.0 35.74 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1681 1752 0.034477 CCTAACCCGGCACCAAATCT 60.034 55.0 0.0 0.0 0.0 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 8.816640 ATGGAAAAATTTATGTGTCACAGAAC 57.183 30.769 12.46 0.77 27.94 3.01
63 64 8.006298 TGGAAAAATTTATGTGTCACAGAACT 57.994 30.769 12.46 5.00 27.94 3.01
64 65 9.126151 TGGAAAAATTTATGTGTCACAGAACTA 57.874 29.630 12.46 0.00 27.94 2.24
65 66 9.959749 GGAAAAATTTATGTGTCACAGAACTAA 57.040 29.630 12.46 2.88 27.94 2.24
68 69 9.445786 AAAATTTATGTGTCACAGAACTAAACG 57.554 29.630 12.46 0.00 27.94 3.60
69 70 6.533819 TTTATGTGTCACAGAACTAAACGG 57.466 37.500 12.46 0.00 27.94 4.44
70 71 2.828877 TGTGTCACAGAACTAAACGGG 58.171 47.619 0.18 0.00 0.00 5.28
71 72 2.140717 GTGTCACAGAACTAAACGGGG 58.859 52.381 0.00 0.00 0.00 5.73
72 73 2.040939 TGTCACAGAACTAAACGGGGA 58.959 47.619 0.00 0.00 0.00 4.81
73 74 2.435069 TGTCACAGAACTAAACGGGGAA 59.565 45.455 0.00 0.00 0.00 3.97
74 75 3.071892 TGTCACAGAACTAAACGGGGAAT 59.928 43.478 0.00 0.00 0.00 3.01
75 76 4.070009 GTCACAGAACTAAACGGGGAATT 58.930 43.478 0.00 0.00 0.00 2.17
76 77 4.517832 GTCACAGAACTAAACGGGGAATTT 59.482 41.667 0.00 0.00 0.00 1.82
77 78 4.517453 TCACAGAACTAAACGGGGAATTTG 59.483 41.667 0.00 0.00 0.00 2.32
78 79 3.824443 ACAGAACTAAACGGGGAATTTGG 59.176 43.478 0.00 0.00 0.00 3.28
79 80 4.076394 CAGAACTAAACGGGGAATTTGGA 58.924 43.478 0.00 0.00 0.00 3.53
80 81 4.521256 CAGAACTAAACGGGGAATTTGGAA 59.479 41.667 0.00 0.00 0.00 3.53
81 82 5.010213 CAGAACTAAACGGGGAATTTGGAAA 59.990 40.000 0.00 0.00 0.00 3.13
82 83 5.599242 AGAACTAAACGGGGAATTTGGAAAA 59.401 36.000 0.00 0.00 0.00 2.29
83 84 5.204409 ACTAAACGGGGAATTTGGAAAAC 57.796 39.130 0.00 0.00 0.00 2.43
84 85 4.650131 ACTAAACGGGGAATTTGGAAAACA 59.350 37.500 0.00 0.00 0.00 2.83
85 86 4.489306 AAACGGGGAATTTGGAAAACAA 57.511 36.364 0.00 0.00 37.28 2.83
86 87 3.462483 ACGGGGAATTTGGAAAACAAC 57.538 42.857 0.00 0.00 39.19 3.32
87 88 2.766828 ACGGGGAATTTGGAAAACAACA 59.233 40.909 0.00 0.00 39.19 3.33
88 89 3.197983 ACGGGGAATTTGGAAAACAACAA 59.802 39.130 0.00 0.00 39.19 2.83
89 90 3.558006 CGGGGAATTTGGAAAACAACAAC 59.442 43.478 0.00 0.00 39.19 3.32
90 91 4.518249 GGGGAATTTGGAAAACAACAACA 58.482 39.130 0.00 0.00 39.19 3.33
91 92 4.944317 GGGGAATTTGGAAAACAACAACAA 59.056 37.500 0.00 0.00 39.19 2.83
92 93 5.163703 GGGGAATTTGGAAAACAACAACAAC 60.164 40.000 0.00 0.00 39.19 3.32
93 94 5.412904 GGGAATTTGGAAAACAACAACAACA 59.587 36.000 0.00 0.00 39.19 3.33
94 95 6.072452 GGGAATTTGGAAAACAACAACAACAA 60.072 34.615 0.00 0.00 39.19 2.83
95 96 6.799441 GGAATTTGGAAAACAACAACAACAAC 59.201 34.615 0.00 0.00 39.19 3.32
96 97 6.867662 ATTTGGAAAACAACAACAACAACA 57.132 29.167 0.00 0.00 39.19 3.33
97 98 5.914085 TTGGAAAACAACAACAACAACAG 57.086 34.783 0.00 0.00 33.18 3.16
98 99 3.743396 TGGAAAACAACAACAACAACAGC 59.257 39.130 0.00 0.00 0.00 4.40
99 100 3.743396 GGAAAACAACAACAACAACAGCA 59.257 39.130 0.00 0.00 0.00 4.41
100 101 4.212214 GGAAAACAACAACAACAACAGCAA 59.788 37.500 0.00 0.00 0.00 3.91
101 102 5.277538 GGAAAACAACAACAACAACAGCAAA 60.278 36.000 0.00 0.00 0.00 3.68
102 103 5.741388 AAACAACAACAACAACAGCAAAA 57.259 30.435 0.00 0.00 0.00 2.44
103 104 4.723879 ACAACAACAACAACAGCAAAAC 57.276 36.364 0.00 0.00 0.00 2.43
104 105 3.496507 ACAACAACAACAACAGCAAAACC 59.503 39.130 0.00 0.00 0.00 3.27
105 106 3.676291 ACAACAACAACAGCAAAACCT 57.324 38.095 0.00 0.00 0.00 3.50
106 107 4.001618 ACAACAACAACAGCAAAACCTT 57.998 36.364 0.00 0.00 0.00 3.50
107 108 4.384940 ACAACAACAACAGCAAAACCTTT 58.615 34.783 0.00 0.00 0.00 3.11
108 109 5.542779 ACAACAACAACAGCAAAACCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
109 110 5.637387 ACAACAACAACAGCAAAACCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
110 111 5.400066 ACAACAACAGCAAAACCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
111 112 5.407502 ACAACAACAGCAAAACCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
112 113 4.649088 ACAACAGCAAAACCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
113 114 3.383505 ACAACAGCAAAACCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
114 115 3.306472 ACAGCAAAACCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
115 116 3.637769 ACAGCAAAACCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
116 117 4.027437 ACAGCAAAACCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
117 118 4.142026 ACAGCAAAACCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
118 119 4.027437 AGCAAAACCTTTAGTCCCAAACA 58.973 39.130 0.00 0.00 0.00 2.83
119 120 4.468153 AGCAAAACCTTTAGTCCCAAACAA 59.532 37.500 0.00 0.00 0.00 2.83
120 121 4.808895 GCAAAACCTTTAGTCCCAAACAAG 59.191 41.667 0.00 0.00 0.00 3.16
121 122 5.625886 GCAAAACCTTTAGTCCCAAACAAGT 60.626 40.000 0.00 0.00 0.00 3.16
122 123 6.403049 CAAAACCTTTAGTCCCAAACAAGTT 58.597 36.000 0.00 0.00 0.00 2.66
123 124 5.592104 AACCTTTAGTCCCAAACAAGTTG 57.408 39.130 0.00 0.00 36.94 3.16
132 133 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
133 134 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
134 135 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
135 136 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
136 137 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
137 138 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
138 139 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
139 140 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
140 141 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
141 142 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
142 143 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
143 144 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
144 145 2.468915 GGGTAGGCTAGAGGTGAAACT 58.531 52.381 0.00 0.00 36.74 2.66
145 146 2.431419 GGGTAGGCTAGAGGTGAAACTC 59.569 54.545 0.00 0.00 36.74 3.01
146 147 3.097614 GGTAGGCTAGAGGTGAAACTCA 58.902 50.000 0.00 0.00 39.97 3.41
147 148 3.707102 GGTAGGCTAGAGGTGAAACTCAT 59.293 47.826 0.00 0.00 39.97 2.90
148 149 4.894114 GGTAGGCTAGAGGTGAAACTCATA 59.106 45.833 0.00 0.00 39.97 2.15
149 150 5.363005 GGTAGGCTAGAGGTGAAACTCATAA 59.637 44.000 0.00 0.00 39.97 1.90
150 151 5.606348 AGGCTAGAGGTGAAACTCATAAG 57.394 43.478 0.00 0.00 39.97 1.73
151 152 5.273208 AGGCTAGAGGTGAAACTCATAAGA 58.727 41.667 0.00 0.00 39.97 2.10
152 153 5.902431 AGGCTAGAGGTGAAACTCATAAGAT 59.098 40.000 0.00 0.00 39.97 2.40
153 154 6.041523 AGGCTAGAGGTGAAACTCATAAGATC 59.958 42.308 0.00 0.00 39.97 2.75
154 155 6.041523 GGCTAGAGGTGAAACTCATAAGATCT 59.958 42.308 0.00 0.00 39.97 2.75
155 156 7.145323 GCTAGAGGTGAAACTCATAAGATCTC 58.855 42.308 0.00 0.00 39.97 2.75
156 157 6.142818 AGAGGTGAAACTCATAAGATCTCG 57.857 41.667 0.00 0.00 39.97 4.04
157 158 5.654650 AGAGGTGAAACTCATAAGATCTCGT 59.345 40.000 0.00 0.00 39.97 4.18
158 159 5.655488 AGGTGAAACTCATAAGATCTCGTG 58.345 41.667 0.00 0.00 36.74 4.35
159 160 5.419155 AGGTGAAACTCATAAGATCTCGTGA 59.581 40.000 0.00 2.71 36.74 4.35
160 161 5.517054 GGTGAAACTCATAAGATCTCGTGAC 59.483 44.000 0.00 0.00 36.74 3.67
161 162 6.093404 GTGAAACTCATAAGATCTCGTGACA 58.907 40.000 0.00 0.00 0.00 3.58
162 163 6.586463 GTGAAACTCATAAGATCTCGTGACAA 59.414 38.462 0.00 0.00 0.00 3.18
163 164 6.586463 TGAAACTCATAAGATCTCGTGACAAC 59.414 38.462 0.00 0.00 0.00 3.32
164 165 5.906113 ACTCATAAGATCTCGTGACAACT 57.094 39.130 0.00 0.00 0.00 3.16
165 166 5.885881 ACTCATAAGATCTCGTGACAACTC 58.114 41.667 0.00 0.00 0.00 3.01
166 167 5.416013 ACTCATAAGATCTCGTGACAACTCA 59.584 40.000 0.00 0.00 0.00 3.41
167 168 6.096141 ACTCATAAGATCTCGTGACAACTCAT 59.904 38.462 0.00 0.00 0.00 2.90
168 169 6.268566 TCATAAGATCTCGTGACAACTCATG 58.731 40.000 0.00 0.00 35.02 3.07
169 170 3.516981 AGATCTCGTGACAACTCATGG 57.483 47.619 0.00 0.00 34.54 3.66
170 171 2.828520 AGATCTCGTGACAACTCATGGT 59.171 45.455 0.00 0.00 34.54 3.55
171 172 3.259374 AGATCTCGTGACAACTCATGGTT 59.741 43.478 0.00 0.00 38.93 3.67
172 173 3.026630 TCTCGTGACAACTCATGGTTC 57.973 47.619 0.00 0.00 35.74 3.62
173 174 1.721389 CTCGTGACAACTCATGGTTCG 59.279 52.381 0.00 0.00 35.74 3.95
174 175 0.790207 CGTGACAACTCATGGTTCGG 59.210 55.000 0.00 0.00 35.74 4.30
175 176 0.517316 GTGACAACTCATGGTTCGGC 59.483 55.000 0.00 0.00 35.74 5.54
176 177 0.107643 TGACAACTCATGGTTCGGCA 59.892 50.000 0.00 0.00 35.74 5.69
177 178 0.517316 GACAACTCATGGTTCGGCAC 59.483 55.000 0.00 0.00 35.74 5.01
178 179 0.179032 ACAACTCATGGTTCGGCACA 60.179 50.000 0.00 0.00 35.74 4.57
179 180 1.167851 CAACTCATGGTTCGGCACAT 58.832 50.000 0.00 0.00 35.74 3.21
180 181 2.290008 ACAACTCATGGTTCGGCACATA 60.290 45.455 0.00 0.00 35.74 2.29
181 182 2.315925 ACTCATGGTTCGGCACATAG 57.684 50.000 0.00 0.00 0.00 2.23
182 183 1.831106 ACTCATGGTTCGGCACATAGA 59.169 47.619 0.00 0.00 0.00 1.98
183 184 2.435805 ACTCATGGTTCGGCACATAGAT 59.564 45.455 0.00 0.00 0.00 1.98
184 185 3.641436 ACTCATGGTTCGGCACATAGATA 59.359 43.478 0.00 0.00 0.00 1.98
185 186 4.240888 CTCATGGTTCGGCACATAGATAG 58.759 47.826 0.00 0.00 0.00 2.08
186 187 2.526304 TGGTTCGGCACATAGATAGC 57.474 50.000 0.00 0.00 0.00 2.97
187 188 1.760029 TGGTTCGGCACATAGATAGCA 59.240 47.619 0.00 0.00 0.00 3.49
188 189 2.169561 TGGTTCGGCACATAGATAGCAA 59.830 45.455 0.00 0.00 0.00 3.91
189 190 3.202906 GGTTCGGCACATAGATAGCAAA 58.797 45.455 0.00 0.00 0.00 3.68
190 191 3.002348 GGTTCGGCACATAGATAGCAAAC 59.998 47.826 0.00 0.00 0.00 2.93
191 192 3.819564 TCGGCACATAGATAGCAAACT 57.180 42.857 0.00 0.00 0.00 2.66
192 193 4.137116 TCGGCACATAGATAGCAAACTT 57.863 40.909 0.00 0.00 0.00 2.66
193 194 4.119862 TCGGCACATAGATAGCAAACTTC 58.880 43.478 0.00 0.00 0.00 3.01
194 195 3.248602 CGGCACATAGATAGCAAACTTCC 59.751 47.826 0.00 0.00 0.00 3.46
195 196 4.199310 GGCACATAGATAGCAAACTTCCA 58.801 43.478 0.00 0.00 0.00 3.53
196 197 4.035675 GGCACATAGATAGCAAACTTCCAC 59.964 45.833 0.00 0.00 0.00 4.02
197 198 4.260375 GCACATAGATAGCAAACTTCCACG 60.260 45.833 0.00 0.00 0.00 4.94
198 199 3.871594 ACATAGATAGCAAACTTCCACGC 59.128 43.478 0.00 0.00 0.00 5.34
199 200 2.472695 AGATAGCAAACTTCCACGCA 57.527 45.000 0.00 0.00 0.00 5.24
200 201 2.076863 AGATAGCAAACTTCCACGCAC 58.923 47.619 0.00 0.00 0.00 5.34
201 202 1.130561 GATAGCAAACTTCCACGCACC 59.869 52.381 0.00 0.00 0.00 5.01
202 203 0.107831 TAGCAAACTTCCACGCACCT 59.892 50.000 0.00 0.00 0.00 4.00
203 204 1.166531 AGCAAACTTCCACGCACCTC 61.167 55.000 0.00 0.00 0.00 3.85
204 205 1.166531 GCAAACTTCCACGCACCTCT 61.167 55.000 0.00 0.00 0.00 3.69
205 206 0.588252 CAAACTTCCACGCACCTCTG 59.412 55.000 0.00 0.00 0.00 3.35
206 207 0.180406 AAACTTCCACGCACCTCTGT 59.820 50.000 0.00 0.00 0.00 3.41
207 208 0.180406 AACTTCCACGCACCTCTGTT 59.820 50.000 0.00 0.00 0.00 3.16
208 209 0.249911 ACTTCCACGCACCTCTGTTC 60.250 55.000 0.00 0.00 0.00 3.18
209 210 0.249868 CTTCCACGCACCTCTGTTCA 60.250 55.000 0.00 0.00 0.00 3.18
210 211 0.396435 TTCCACGCACCTCTGTTCAT 59.604 50.000 0.00 0.00 0.00 2.57
211 212 1.262417 TCCACGCACCTCTGTTCATA 58.738 50.000 0.00 0.00 0.00 2.15
212 213 1.204704 TCCACGCACCTCTGTTCATAG 59.795 52.381 0.00 0.00 0.00 2.23
213 214 1.002366 CACGCACCTCTGTTCATAGC 58.998 55.000 0.00 0.00 0.00 2.97
214 215 0.898320 ACGCACCTCTGTTCATAGCT 59.102 50.000 0.00 0.00 0.00 3.32
215 216 2.100197 ACGCACCTCTGTTCATAGCTA 58.900 47.619 0.00 0.00 0.00 3.32
216 217 2.099921 ACGCACCTCTGTTCATAGCTAG 59.900 50.000 0.00 0.00 0.00 3.42
217 218 2.099921 CGCACCTCTGTTCATAGCTAGT 59.900 50.000 0.00 0.00 0.00 2.57
218 219 3.429547 CGCACCTCTGTTCATAGCTAGTT 60.430 47.826 0.00 0.00 0.00 2.24
219 220 4.116238 GCACCTCTGTTCATAGCTAGTTC 58.884 47.826 0.00 0.00 0.00 3.01
220 221 4.142049 GCACCTCTGTTCATAGCTAGTTCT 60.142 45.833 0.00 0.00 0.00 3.01
221 222 5.625656 GCACCTCTGTTCATAGCTAGTTCTT 60.626 44.000 0.00 0.00 0.00 2.52
222 223 6.402222 CACCTCTGTTCATAGCTAGTTCTTT 58.598 40.000 0.00 0.00 0.00 2.52
223 224 6.312426 CACCTCTGTTCATAGCTAGTTCTTTG 59.688 42.308 0.00 0.00 0.00 2.77
224 225 5.814705 CCTCTGTTCATAGCTAGTTCTTTGG 59.185 44.000 0.00 0.00 0.00 3.28
225 226 6.360370 TCTGTTCATAGCTAGTTCTTTGGT 57.640 37.500 0.00 0.00 0.00 3.67
226 227 6.166279 TCTGTTCATAGCTAGTTCTTTGGTG 58.834 40.000 0.00 0.00 0.00 4.17
227 228 6.014584 TCTGTTCATAGCTAGTTCTTTGGTGA 60.015 38.462 0.00 0.00 0.00 4.02
228 229 6.711277 TGTTCATAGCTAGTTCTTTGGTGAT 58.289 36.000 0.00 0.00 0.00 3.06
229 230 7.847096 TGTTCATAGCTAGTTCTTTGGTGATA 58.153 34.615 0.00 0.00 0.00 2.15
230 231 7.764443 TGTTCATAGCTAGTTCTTTGGTGATAC 59.236 37.037 0.00 0.00 0.00 2.24
231 232 7.661536 TCATAGCTAGTTCTTTGGTGATACT 57.338 36.000 0.00 0.00 0.00 2.12
232 233 7.717568 TCATAGCTAGTTCTTTGGTGATACTC 58.282 38.462 0.00 0.00 0.00 2.59
233 234 5.346181 AGCTAGTTCTTTGGTGATACTCC 57.654 43.478 0.00 0.00 0.00 3.85
234 235 4.777896 AGCTAGTTCTTTGGTGATACTCCA 59.222 41.667 0.00 0.00 0.00 3.86
235 236 5.248477 AGCTAGTTCTTTGGTGATACTCCAA 59.752 40.000 0.00 0.00 42.29 3.53
236 237 6.069963 AGCTAGTTCTTTGGTGATACTCCAAT 60.070 38.462 6.20 0.00 43.25 3.16
237 238 6.258947 GCTAGTTCTTTGGTGATACTCCAATC 59.741 42.308 6.20 0.00 43.25 2.67
238 239 5.501156 AGTTCTTTGGTGATACTCCAATCC 58.499 41.667 6.20 0.00 43.25 3.01
239 240 5.251700 AGTTCTTTGGTGATACTCCAATCCT 59.748 40.000 6.20 0.00 43.25 3.24
240 241 5.779241 TCTTTGGTGATACTCCAATCCTT 57.221 39.130 6.20 0.00 43.25 3.36
241 242 5.745227 TCTTTGGTGATACTCCAATCCTTC 58.255 41.667 6.20 0.00 43.25 3.46
242 243 5.250543 TCTTTGGTGATACTCCAATCCTTCA 59.749 40.000 6.20 0.00 43.25 3.02
243 244 4.760530 TGGTGATACTCCAATCCTTCAG 57.239 45.455 0.00 0.00 31.50 3.02
244 245 3.455910 TGGTGATACTCCAATCCTTCAGG 59.544 47.826 0.00 0.00 31.50 3.86
262 263 8.709308 TCCTTCAGGAATTTGGAAAATAAAACA 58.291 29.630 0.00 0.00 42.18 2.83
263 264 9.336171 CCTTCAGGAATTTGGAAAATAAAACAA 57.664 29.630 0.00 0.00 37.39 2.83
267 268 9.729023 CAGGAATTTGGAAAATAAAACAAAACC 57.271 29.630 0.00 0.00 36.53 3.27
268 269 8.908903 AGGAATTTGGAAAATAAAACAAAACCC 58.091 29.630 0.00 0.00 36.53 4.11
269 270 7.858382 GGAATTTGGAAAATAAAACAAAACCCG 59.142 33.333 0.00 0.00 36.53 5.28
270 271 8.507524 AATTTGGAAAATAAAACAAAACCCGA 57.492 26.923 0.00 0.00 36.53 5.14
271 272 8.684386 ATTTGGAAAATAAAACAAAACCCGAT 57.316 26.923 0.00 0.00 36.53 4.18
272 273 9.780186 ATTTGGAAAATAAAACAAAACCCGATA 57.220 25.926 0.00 0.00 36.53 2.92
273 274 9.609346 TTTGGAAAATAAAACAAAACCCGATAA 57.391 25.926 0.00 0.00 30.67 1.75
274 275 9.609346 TTGGAAAATAAAACAAAACCCGATAAA 57.391 25.926 0.00 0.00 0.00 1.40
275 276 9.780186 TGGAAAATAAAACAAAACCCGATAAAT 57.220 25.926 0.00 0.00 0.00 1.40
280 281 6.693761 AAAACAAAACCCGATAAATAACGC 57.306 33.333 0.00 0.00 0.00 4.84
281 282 5.373981 AACAAAACCCGATAAATAACGCA 57.626 34.783 0.00 0.00 0.00 5.24
282 283 5.570234 ACAAAACCCGATAAATAACGCAT 57.430 34.783 0.00 0.00 0.00 4.73
283 284 5.575019 ACAAAACCCGATAAATAACGCATC 58.425 37.500 0.00 0.00 0.00 3.91
284 285 4.823790 AAACCCGATAAATAACGCATCC 57.176 40.909 0.00 0.00 0.00 3.51
285 286 2.409975 ACCCGATAAATAACGCATCCG 58.590 47.619 0.00 0.00 41.14 4.18
286 287 1.730064 CCCGATAAATAACGCATCCGG 59.270 52.381 0.00 0.00 39.22 5.14
287 288 1.730064 CCGATAAATAACGCATCCGGG 59.270 52.381 0.00 0.00 39.22 5.73
288 289 1.127951 CGATAAATAACGCATCCGGGC 59.872 52.381 0.00 0.00 39.22 6.13
297 298 4.082523 CATCCGGGCGTCACAGGT 62.083 66.667 0.00 0.00 0.00 4.00
298 299 4.082523 ATCCGGGCGTCACAGGTG 62.083 66.667 0.00 0.00 0.00 4.00
301 302 4.293648 CGGGCGTCACAGGTGTCA 62.294 66.667 0.00 0.00 0.00 3.58
302 303 2.665185 GGGCGTCACAGGTGTCAC 60.665 66.667 0.00 0.00 0.00 3.67
303 304 2.108157 GGCGTCACAGGTGTCACA 59.892 61.111 5.12 0.00 0.00 3.58
304 305 1.956170 GGCGTCACAGGTGTCACAG 60.956 63.158 5.12 0.00 0.00 3.66
305 306 1.956170 GCGTCACAGGTGTCACAGG 60.956 63.158 5.12 0.00 0.00 4.00
306 307 1.441729 CGTCACAGGTGTCACAGGT 59.558 57.895 5.12 0.00 0.00 4.00
307 308 0.875908 CGTCACAGGTGTCACAGGTG 60.876 60.000 16.13 16.13 0.00 4.00
308 309 0.178068 GTCACAGGTGTCACAGGTGT 59.822 55.000 19.56 11.03 0.00 4.16
309 310 0.464036 TCACAGGTGTCACAGGTGTC 59.536 55.000 19.56 0.00 0.00 3.67
310 311 0.177836 CACAGGTGTCACAGGTGTCA 59.822 55.000 14.72 0.00 0.00 3.58
311 312 0.178068 ACAGGTGTCACAGGTGTCAC 59.822 55.000 17.55 17.55 44.76 3.67
312 313 0.177836 CAGGTGTCACAGGTGTCACA 59.822 55.000 23.88 10.06 46.39 3.58
320 321 1.327690 ACAGGTGTCACAGGTGTCGT 61.328 55.000 5.12 0.00 0.00 4.34
322 323 2.244651 GGTGTCACAGGTGTCGTGC 61.245 63.158 5.12 0.00 34.27 5.34
336 337 2.434359 GTGCACAGCGTCCCTACC 60.434 66.667 13.17 0.00 0.00 3.18
531 548 2.200373 TGCTTGTCTTTTAGGGAGGC 57.800 50.000 0.00 0.00 0.00 4.70
563 581 8.886719 CACATATATGGTGCGATATCTGAATTT 58.113 33.333 16.96 0.00 0.00 1.82
619 637 4.144297 TCAGAACTTACCAAAGCAAGCAT 58.856 39.130 0.00 0.00 36.05 3.79
633 651 4.333690 AGCAAGCATGAAACAAGATCTCT 58.666 39.130 0.00 0.00 0.00 3.10
661 680 9.105844 TCTTAATGGGATTTGGTTTTTAATGGA 57.894 29.630 0.00 0.00 0.00 3.41
665 684 5.608860 TGGGATTTGGTTTTTAATGGAAGGT 59.391 36.000 0.00 0.00 0.00 3.50
668 687 7.179516 GGGATTTGGTTTTTAATGGAAGGTAGA 59.820 37.037 0.00 0.00 0.00 2.59
700 719 4.704540 TGGTGATGCGAAAATAAACCAGAT 59.295 37.500 0.00 0.00 32.62 2.90
701 720 5.163663 TGGTGATGCGAAAATAAACCAGATC 60.164 40.000 0.00 0.00 32.62 2.75
753 772 4.870021 AAATCTGTGGAAGGGAAGCTAT 57.130 40.909 0.00 0.00 0.00 2.97
755 774 1.757118 TCTGTGGAAGGGAAGCTATCG 59.243 52.381 0.00 0.00 0.00 2.92
774 795 3.012518 TCGACTCCCTTTTACGAGTAGG 58.987 50.000 0.00 0.00 39.44 3.18
933 954 3.057876 TGCTACAAAAATAGTGCCAACGG 60.058 43.478 0.00 0.00 0.00 4.44
954 975 7.514784 ACGGTGTGTATATATACTTGCACTA 57.485 36.000 25.94 8.35 34.68 2.74
974 995 6.109359 CACTAGTAAAGAAACATCTCCCCAG 58.891 44.000 0.00 0.00 0.00 4.45
983 1004 1.364328 ACATCTCCCCAGGAAGAGAGT 59.636 52.381 13.07 9.21 42.19 3.24
1134 1205 0.948623 TGATGTGGTTGTCGAAGCCG 60.949 55.000 0.00 0.00 37.07 5.52
1146 1217 1.203758 TCGAAGCCGCAACAAGATCTA 59.796 47.619 0.00 0.00 35.37 1.98
1150 1221 1.016627 GCCGCAACAAGATCTATGCA 58.983 50.000 21.12 0.00 38.69 3.96
1230 1301 4.382320 TACGTGACCCTTGCCGCC 62.382 66.667 0.00 0.00 0.00 6.13
1251 1322 1.366854 GGTTCGCCGTGGAATCCTTC 61.367 60.000 0.00 0.00 0.00 3.46
1254 1325 2.165301 CGCCGTGGAATCCTTCGAC 61.165 63.158 15.92 6.41 35.38 4.20
1260 1331 0.963225 TGGAATCCTTCGACGTCACA 59.037 50.000 17.16 0.00 0.00 3.58
1570 1641 7.147479 ACCATCTTGCTACTTTGATAGGTGTAT 60.147 37.037 0.00 0.00 0.00 2.29
1581 1652 9.988815 ACTTTGATAGGTGTATTGTGATAGATC 57.011 33.333 0.00 0.00 0.00 2.75
1589 1660 5.403766 GTGTATTGTGATAGATCAAGAGGCG 59.596 44.000 0.00 0.00 38.75 5.52
1612 1683 0.450482 CGTACGCCAAAGAGCAAACG 60.450 55.000 0.52 0.00 35.22 3.60
1619 1690 3.603770 CGCCAAAGAGCAAACGATAAAAG 59.396 43.478 0.00 0.00 0.00 2.27
1633 1704 3.242413 CGATAAAAGAGACATTGGGTGCG 60.242 47.826 0.00 0.00 0.00 5.34
1681 1752 5.497464 TGTATTGTCAGAGTTGGATCCAA 57.503 39.130 23.63 23.63 0.00 3.53
1717 1788 7.945664 CCGGGTTAGGCTAATCTATCTATCTAT 59.054 40.741 16.63 0.00 0.00 1.98
1765 1836 4.515567 CGAGGCTACTGATGTGTCATAGTA 59.484 45.833 0.00 0.00 32.98 1.82
1780 1852 6.942576 GTGTCATAGTATTAGGGCATTCCAAT 59.057 38.462 0.00 0.00 38.24 3.16
1800 1872 3.810310 TGACAACCCGCAAAAATTCTT 57.190 38.095 0.00 0.00 0.00 2.52
1851 1924 0.839277 ATGAACATGGATGCGGGAGA 59.161 50.000 0.00 0.00 0.00 3.71
1853 1926 0.107703 GAACATGGATGCGGGAGACA 60.108 55.000 0.00 0.00 0.00 3.41
1855 1928 1.267574 ACATGGATGCGGGAGACAGT 61.268 55.000 0.00 0.00 0.00 3.55
1859 1948 0.249657 GGATGCGGGAGACAGTCATC 60.250 60.000 2.66 0.00 37.87 2.92
1904 1993 2.035321 ACCGGACAAAATTCGTGCAAAT 59.965 40.909 9.46 0.00 0.00 2.32
1906 1995 4.230657 CCGGACAAAATTCGTGCAAATAA 58.769 39.130 0.00 0.00 0.00 1.40
1928 2017 9.747898 AATAAGGCCGGAATTCATATAAACATA 57.252 29.630 5.05 0.00 0.00 2.29
1973 2063 9.072375 TGGCGGATTTTCATATAAACATAATGA 57.928 29.630 0.00 0.00 0.00 2.57
2001 2094 6.389091 TCATTGCATTTACATCAAAGTGGTC 58.611 36.000 0.00 0.00 0.00 4.02
2049 2145 3.382048 ACCTAATCTAAATCGCCGTCC 57.618 47.619 0.00 0.00 0.00 4.79
2050 2146 2.288030 ACCTAATCTAAATCGCCGTCCG 60.288 50.000 0.00 0.00 38.61 4.79
2070 2170 2.633488 GGAATCCCTTTGTCTTCCTCG 58.367 52.381 0.00 0.00 35.36 4.63
2240 2345 1.520192 CCATGTGGGATCGACGGAA 59.480 57.895 0.00 0.00 40.01 4.30
2270 2375 1.068194 AGAGAAGAACCGAGCAAGACG 60.068 52.381 0.00 0.00 0.00 4.18
2271 2376 0.959553 AGAAGAACCGAGCAAGACGA 59.040 50.000 0.00 0.00 0.00 4.20
2272 2377 1.061485 GAAGAACCGAGCAAGACGAC 58.939 55.000 0.00 0.00 0.00 4.34
2275 2380 1.816835 AGAACCGAGCAAGACGACATA 59.183 47.619 0.00 0.00 0.00 2.29
2386 2493 2.426023 GACACTGAGGTGGCGGTT 59.574 61.111 1.29 0.00 46.85 4.44
2436 2544 0.906282 TCTGTCTCTGCCTGCATGGA 60.906 55.000 6.40 0.00 38.35 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.906660 GTTCTGTGACACATAAATTTTTCCATA 57.093 29.630 9.11 0.00 0.00 2.74
37 38 8.641541 AGTTCTGTGACACATAAATTTTTCCAT 58.358 29.630 9.11 0.00 0.00 3.41
38 39 8.006298 AGTTCTGTGACACATAAATTTTTCCA 57.994 30.769 9.11 0.00 0.00 3.53
39 40 9.959749 TTAGTTCTGTGACACATAAATTTTTCC 57.040 29.630 9.11 0.00 0.00 3.13
42 43 9.445786 CGTTTAGTTCTGTGACACATAAATTTT 57.554 29.630 9.11 0.00 0.00 1.82
43 44 8.073768 CCGTTTAGTTCTGTGACACATAAATTT 58.926 33.333 9.11 0.00 0.00 1.82
44 45 7.308348 CCCGTTTAGTTCTGTGACACATAAATT 60.308 37.037 9.11 6.44 0.00 1.82
45 46 6.148811 CCCGTTTAGTTCTGTGACACATAAAT 59.851 38.462 9.11 10.13 0.00 1.40
46 47 5.467399 CCCGTTTAGTTCTGTGACACATAAA 59.533 40.000 9.11 8.21 0.00 1.40
47 48 4.992319 CCCGTTTAGTTCTGTGACACATAA 59.008 41.667 9.11 5.46 0.00 1.90
48 49 4.561938 CCCCGTTTAGTTCTGTGACACATA 60.562 45.833 9.11 0.00 0.00 2.29
49 50 3.399330 CCCGTTTAGTTCTGTGACACAT 58.601 45.455 9.11 0.00 0.00 3.21
50 51 2.484065 CCCCGTTTAGTTCTGTGACACA 60.484 50.000 8.26 8.26 0.00 3.72
51 52 2.140717 CCCCGTTTAGTTCTGTGACAC 58.859 52.381 0.00 0.00 0.00 3.67
52 53 2.040939 TCCCCGTTTAGTTCTGTGACA 58.959 47.619 0.00 0.00 0.00 3.58
53 54 2.825861 TCCCCGTTTAGTTCTGTGAC 57.174 50.000 0.00 0.00 0.00 3.67
54 55 4.360951 AATTCCCCGTTTAGTTCTGTGA 57.639 40.909 0.00 0.00 0.00 3.58
55 56 4.320935 CCAAATTCCCCGTTTAGTTCTGTG 60.321 45.833 0.00 0.00 0.00 3.66
56 57 3.824443 CCAAATTCCCCGTTTAGTTCTGT 59.176 43.478 0.00 0.00 0.00 3.41
57 58 4.076394 TCCAAATTCCCCGTTTAGTTCTG 58.924 43.478 0.00 0.00 0.00 3.02
58 59 4.376225 TCCAAATTCCCCGTTTAGTTCT 57.624 40.909 0.00 0.00 0.00 3.01
59 60 5.456548 TTTCCAAATTCCCCGTTTAGTTC 57.543 39.130 0.00 0.00 0.00 3.01
60 61 5.128991 TGTTTTCCAAATTCCCCGTTTAGTT 59.871 36.000 0.00 0.00 0.00 2.24
61 62 4.650131 TGTTTTCCAAATTCCCCGTTTAGT 59.350 37.500 0.00 0.00 0.00 2.24
62 63 5.203060 TGTTTTCCAAATTCCCCGTTTAG 57.797 39.130 0.00 0.00 0.00 1.85
63 64 5.105064 TGTTGTTTTCCAAATTCCCCGTTTA 60.105 36.000 0.00 0.00 34.07 2.01
64 65 4.193090 GTTGTTTTCCAAATTCCCCGTTT 58.807 39.130 0.00 0.00 34.07 3.60
65 66 3.197983 TGTTGTTTTCCAAATTCCCCGTT 59.802 39.130 0.00 0.00 34.07 4.44
66 67 2.766828 TGTTGTTTTCCAAATTCCCCGT 59.233 40.909 0.00 0.00 34.07 5.28
67 68 3.460857 TGTTGTTTTCCAAATTCCCCG 57.539 42.857 0.00 0.00 34.07 5.73
68 69 4.518249 TGTTGTTGTTTTCCAAATTCCCC 58.482 39.130 0.00 0.00 34.07 4.81
69 70 5.412904 TGTTGTTGTTGTTTTCCAAATTCCC 59.587 36.000 0.00 0.00 34.07 3.97
70 71 6.487689 TGTTGTTGTTGTTTTCCAAATTCC 57.512 33.333 0.00 0.00 34.07 3.01
71 72 7.355778 TGTTGTTGTTGTTGTTTTCCAAATTC 58.644 30.769 0.00 0.00 34.07 2.17
72 73 7.264373 TGTTGTTGTTGTTGTTTTCCAAATT 57.736 28.000 0.00 0.00 34.07 1.82
73 74 6.567511 GCTGTTGTTGTTGTTGTTTTCCAAAT 60.568 34.615 0.00 0.00 34.07 2.32
74 75 5.277538 GCTGTTGTTGTTGTTGTTTTCCAAA 60.278 36.000 0.00 0.00 34.07 3.28
75 76 4.212214 GCTGTTGTTGTTGTTGTTTTCCAA 59.788 37.500 0.00 0.00 0.00 3.53
76 77 3.743396 GCTGTTGTTGTTGTTGTTTTCCA 59.257 39.130 0.00 0.00 0.00 3.53
77 78 3.743396 TGCTGTTGTTGTTGTTGTTTTCC 59.257 39.130 0.00 0.00 0.00 3.13
78 79 4.981389 TGCTGTTGTTGTTGTTGTTTTC 57.019 36.364 0.00 0.00 0.00 2.29
79 80 5.741388 TTTGCTGTTGTTGTTGTTGTTTT 57.259 30.435 0.00 0.00 0.00 2.43
80 81 5.504830 GGTTTTGCTGTTGTTGTTGTTGTTT 60.505 36.000 0.00 0.00 0.00 2.83
81 82 4.024472 GGTTTTGCTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
82 83 3.496507 GGTTTTGCTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
83 84 3.745458 AGGTTTTGCTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
84 85 4.001618 AGGTTTTGCTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
85 86 3.676291 AGGTTTTGCTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
86 87 5.637387 ACTAAAGGTTTTGCTGTTGTTGTTG 59.363 36.000 0.00 0.00 0.00 3.33
87 88 5.789521 ACTAAAGGTTTTGCTGTTGTTGTT 58.210 33.333 0.00 0.00 0.00 2.83
88 89 5.400066 ACTAAAGGTTTTGCTGTTGTTGT 57.600 34.783 0.00 0.00 0.00 3.32
89 90 4.803613 GGACTAAAGGTTTTGCTGTTGTTG 59.196 41.667 0.00 0.00 0.00 3.33
90 91 4.142026 GGGACTAAAGGTTTTGCTGTTGTT 60.142 41.667 0.00 0.00 0.00 2.83
91 92 3.383505 GGGACTAAAGGTTTTGCTGTTGT 59.616 43.478 0.00 0.00 0.00 3.32
92 93 3.383185 TGGGACTAAAGGTTTTGCTGTTG 59.617 43.478 0.00 0.00 0.00 3.33
93 94 3.637769 TGGGACTAAAGGTTTTGCTGTT 58.362 40.909 0.00 0.00 0.00 3.16
94 95 3.306472 TGGGACTAAAGGTTTTGCTGT 57.694 42.857 0.00 0.00 0.00 4.40
95 96 4.142049 TGTTTGGGACTAAAGGTTTTGCTG 60.142 41.667 0.00 0.00 0.00 4.41
96 97 4.027437 TGTTTGGGACTAAAGGTTTTGCT 58.973 39.130 0.00 0.00 0.00 3.91
97 98 4.394439 TGTTTGGGACTAAAGGTTTTGC 57.606 40.909 0.00 0.00 0.00 3.68
98 99 5.972935 ACTTGTTTGGGACTAAAGGTTTTG 58.027 37.500 0.00 0.00 0.00 2.44
99 100 6.403049 CAACTTGTTTGGGACTAAAGGTTTT 58.597 36.000 0.00 0.00 0.00 2.43
100 101 5.972935 CAACTTGTTTGGGACTAAAGGTTT 58.027 37.500 0.00 0.00 0.00 3.27
101 102 5.592104 CAACTTGTTTGGGACTAAAGGTT 57.408 39.130 0.00 0.00 0.00 3.50
113 114 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
114 115 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
115 116 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
116 117 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
117 118 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
118 119 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
119 120 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
120 121 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
121 122 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
122 123 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
123 124 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
124 125 2.431419 GAGTTTCACCTCTAGCCTACCC 59.569 54.545 0.00 0.00 0.00 3.69
125 126 3.097614 TGAGTTTCACCTCTAGCCTACC 58.902 50.000 0.00 0.00 32.50 3.18
126 127 6.321690 TCTTATGAGTTTCACCTCTAGCCTAC 59.678 42.308 0.00 0.00 32.50 3.18
127 128 6.432581 TCTTATGAGTTTCACCTCTAGCCTA 58.567 40.000 0.00 0.00 32.50 3.93
128 129 5.273208 TCTTATGAGTTTCACCTCTAGCCT 58.727 41.667 0.00 0.00 32.50 4.58
129 130 5.599999 TCTTATGAGTTTCACCTCTAGCC 57.400 43.478 0.00 0.00 32.50 3.93
130 131 7.049799 AGATCTTATGAGTTTCACCTCTAGC 57.950 40.000 0.00 0.00 32.50 3.42
131 132 7.012894 ACGAGATCTTATGAGTTTCACCTCTAG 59.987 40.741 0.00 0.00 32.50 2.43
132 133 6.829298 ACGAGATCTTATGAGTTTCACCTCTA 59.171 38.462 0.00 0.00 32.50 2.43
133 134 5.654650 ACGAGATCTTATGAGTTTCACCTCT 59.345 40.000 0.00 0.00 32.50 3.69
134 135 5.746245 CACGAGATCTTATGAGTTTCACCTC 59.254 44.000 0.00 0.00 0.00 3.85
135 136 5.419155 TCACGAGATCTTATGAGTTTCACCT 59.581 40.000 0.00 0.00 0.00 4.00
136 137 5.517054 GTCACGAGATCTTATGAGTTTCACC 59.483 44.000 9.49 0.00 0.00 4.02
137 138 6.093404 TGTCACGAGATCTTATGAGTTTCAC 58.907 40.000 9.49 0.66 0.00 3.18
138 139 6.267496 TGTCACGAGATCTTATGAGTTTCA 57.733 37.500 9.49 3.20 0.00 2.69
139 140 6.809196 AGTTGTCACGAGATCTTATGAGTTTC 59.191 38.462 9.49 1.05 0.00 2.78
140 141 6.692486 AGTTGTCACGAGATCTTATGAGTTT 58.308 36.000 9.49 0.00 0.00 2.66
141 142 6.071896 TGAGTTGTCACGAGATCTTATGAGTT 60.072 38.462 9.49 0.00 0.00 3.01
142 143 5.416013 TGAGTTGTCACGAGATCTTATGAGT 59.584 40.000 9.49 0.00 0.00 3.41
143 144 5.884771 TGAGTTGTCACGAGATCTTATGAG 58.115 41.667 9.49 0.00 0.00 2.90
144 145 5.897377 TGAGTTGTCACGAGATCTTATGA 57.103 39.130 0.00 0.83 0.00 2.15
145 146 5.461407 CCATGAGTTGTCACGAGATCTTATG 59.539 44.000 0.00 0.00 34.75 1.90
146 147 5.127845 ACCATGAGTTGTCACGAGATCTTAT 59.872 40.000 0.00 0.00 34.75 1.73
147 148 4.462834 ACCATGAGTTGTCACGAGATCTTA 59.537 41.667 0.00 0.00 34.75 2.10
148 149 3.259374 ACCATGAGTTGTCACGAGATCTT 59.741 43.478 0.00 0.00 34.75 2.40
149 150 2.828520 ACCATGAGTTGTCACGAGATCT 59.171 45.455 0.00 0.00 34.75 2.75
150 151 3.238108 ACCATGAGTTGTCACGAGATC 57.762 47.619 0.00 0.00 34.75 2.75
151 152 3.589988 GAACCATGAGTTGTCACGAGAT 58.410 45.455 0.00 0.00 39.40 2.75
152 153 2.607038 CGAACCATGAGTTGTCACGAGA 60.607 50.000 0.00 0.00 39.40 4.04
153 154 1.721389 CGAACCATGAGTTGTCACGAG 59.279 52.381 0.00 0.00 39.40 4.18
154 155 1.604438 CCGAACCATGAGTTGTCACGA 60.604 52.381 0.00 0.00 39.40 4.35
155 156 0.790207 CCGAACCATGAGTTGTCACG 59.210 55.000 0.00 0.00 39.40 4.35
156 157 0.517316 GCCGAACCATGAGTTGTCAC 59.483 55.000 0.00 0.00 39.40 3.67
157 158 0.107643 TGCCGAACCATGAGTTGTCA 59.892 50.000 0.00 0.00 39.40 3.58
158 159 0.517316 GTGCCGAACCATGAGTTGTC 59.483 55.000 0.00 0.00 39.40 3.18
159 160 0.179032 TGTGCCGAACCATGAGTTGT 60.179 50.000 0.00 0.00 39.40 3.32
160 161 1.167851 ATGTGCCGAACCATGAGTTG 58.832 50.000 0.00 0.00 39.40 3.16
161 162 2.236146 TCTATGTGCCGAACCATGAGTT 59.764 45.455 0.00 0.00 43.07 3.01
162 163 1.831106 TCTATGTGCCGAACCATGAGT 59.169 47.619 0.00 0.00 0.00 3.41
163 164 2.602257 TCTATGTGCCGAACCATGAG 57.398 50.000 0.00 0.00 0.00 2.90
164 165 3.554960 GCTATCTATGTGCCGAACCATGA 60.555 47.826 0.00 0.00 0.00 3.07
165 166 2.738846 GCTATCTATGTGCCGAACCATG 59.261 50.000 0.00 0.00 0.00 3.66
166 167 2.368548 TGCTATCTATGTGCCGAACCAT 59.631 45.455 0.00 0.00 0.00 3.55
167 168 1.760029 TGCTATCTATGTGCCGAACCA 59.240 47.619 0.00 0.00 0.00 3.67
168 169 2.526304 TGCTATCTATGTGCCGAACC 57.474 50.000 0.00 0.00 0.00 3.62
169 170 3.871594 AGTTTGCTATCTATGTGCCGAAC 59.128 43.478 0.00 0.00 0.00 3.95
170 171 4.137116 AGTTTGCTATCTATGTGCCGAA 57.863 40.909 0.00 0.00 0.00 4.30
171 172 3.819564 AGTTTGCTATCTATGTGCCGA 57.180 42.857 0.00 0.00 0.00 5.54
172 173 3.248602 GGAAGTTTGCTATCTATGTGCCG 59.751 47.826 0.00 0.00 0.00 5.69
173 174 4.035675 GTGGAAGTTTGCTATCTATGTGCC 59.964 45.833 0.00 0.00 0.00 5.01
174 175 4.260375 CGTGGAAGTTTGCTATCTATGTGC 60.260 45.833 0.00 0.00 0.00 4.57
175 176 4.260375 GCGTGGAAGTTTGCTATCTATGTG 60.260 45.833 0.00 0.00 0.00 3.21
176 177 3.871594 GCGTGGAAGTTTGCTATCTATGT 59.128 43.478 0.00 0.00 0.00 2.29
177 178 3.871006 TGCGTGGAAGTTTGCTATCTATG 59.129 43.478 0.00 0.00 0.00 2.23
178 179 3.871594 GTGCGTGGAAGTTTGCTATCTAT 59.128 43.478 0.00 0.00 0.00 1.98
179 180 3.259064 GTGCGTGGAAGTTTGCTATCTA 58.741 45.455 0.00 0.00 0.00 1.98
180 181 2.076863 GTGCGTGGAAGTTTGCTATCT 58.923 47.619 0.00 0.00 0.00 1.98
181 182 1.130561 GGTGCGTGGAAGTTTGCTATC 59.869 52.381 0.00 0.00 0.00 2.08
182 183 1.165270 GGTGCGTGGAAGTTTGCTAT 58.835 50.000 0.00 0.00 0.00 2.97
183 184 0.107831 AGGTGCGTGGAAGTTTGCTA 59.892 50.000 0.00 0.00 0.00 3.49
184 185 1.152963 AGGTGCGTGGAAGTTTGCT 60.153 52.632 0.00 0.00 0.00 3.91
185 186 1.166531 AGAGGTGCGTGGAAGTTTGC 61.167 55.000 0.00 0.00 0.00 3.68
186 187 0.588252 CAGAGGTGCGTGGAAGTTTG 59.412 55.000 0.00 0.00 0.00 2.93
187 188 0.180406 ACAGAGGTGCGTGGAAGTTT 59.820 50.000 0.00 0.00 0.00 2.66
188 189 0.180406 AACAGAGGTGCGTGGAAGTT 59.820 50.000 0.00 0.00 0.00 2.66
189 190 0.249911 GAACAGAGGTGCGTGGAAGT 60.250 55.000 0.00 0.00 0.00 3.01
190 191 0.249868 TGAACAGAGGTGCGTGGAAG 60.250 55.000 0.00 0.00 0.00 3.46
191 192 0.396435 ATGAACAGAGGTGCGTGGAA 59.604 50.000 0.00 0.00 0.00 3.53
192 193 1.204704 CTATGAACAGAGGTGCGTGGA 59.795 52.381 0.00 0.00 0.00 4.02
193 194 1.645034 CTATGAACAGAGGTGCGTGG 58.355 55.000 0.00 0.00 0.00 4.94
194 195 1.002366 GCTATGAACAGAGGTGCGTG 58.998 55.000 0.00 0.00 0.00 5.34
195 196 0.898320 AGCTATGAACAGAGGTGCGT 59.102 50.000 0.43 0.00 0.00 5.24
196 197 2.099921 ACTAGCTATGAACAGAGGTGCG 59.900 50.000 10.67 5.25 32.24 5.34
197 198 3.810310 ACTAGCTATGAACAGAGGTGC 57.190 47.619 10.67 0.00 32.24 5.01
198 199 5.590530 AGAACTAGCTATGAACAGAGGTG 57.409 43.478 10.67 4.64 32.24 4.00
199 200 6.402222 CAAAGAACTAGCTATGAACAGAGGT 58.598 40.000 6.41 6.41 34.50 3.85
200 201 5.814705 CCAAAGAACTAGCTATGAACAGAGG 59.185 44.000 0.00 0.00 0.00 3.69
201 202 6.312426 CACCAAAGAACTAGCTATGAACAGAG 59.688 42.308 0.00 0.00 0.00 3.35
202 203 6.014584 TCACCAAAGAACTAGCTATGAACAGA 60.015 38.462 0.00 0.00 0.00 3.41
203 204 6.166279 TCACCAAAGAACTAGCTATGAACAG 58.834 40.000 0.00 0.00 0.00 3.16
204 205 6.109156 TCACCAAAGAACTAGCTATGAACA 57.891 37.500 0.00 0.00 0.00 3.18
205 206 7.982354 AGTATCACCAAAGAACTAGCTATGAAC 59.018 37.037 0.00 0.00 0.00 3.18
206 207 8.079211 AGTATCACCAAAGAACTAGCTATGAA 57.921 34.615 0.00 0.00 0.00 2.57
207 208 7.201920 GGAGTATCACCAAAGAACTAGCTATGA 60.202 40.741 0.00 0.00 36.25 2.15
208 209 6.926272 GGAGTATCACCAAAGAACTAGCTATG 59.074 42.308 0.00 0.00 36.25 2.23
209 210 6.611642 TGGAGTATCACCAAAGAACTAGCTAT 59.388 38.462 0.00 0.00 36.25 2.97
210 211 5.955959 TGGAGTATCACCAAAGAACTAGCTA 59.044 40.000 0.00 0.00 36.25 3.32
211 212 4.777896 TGGAGTATCACCAAAGAACTAGCT 59.222 41.667 0.00 0.00 36.25 3.32
212 213 5.086104 TGGAGTATCACCAAAGAACTAGC 57.914 43.478 0.00 0.00 36.25 3.42
222 223 3.455910 CCTGAAGGATTGGAGTATCACCA 59.544 47.826 0.00 0.00 34.60 4.17
223 224 3.711704 TCCTGAAGGATTGGAGTATCACC 59.288 47.826 0.00 0.00 39.78 4.02
224 225 5.359194 TTCCTGAAGGATTGGAGTATCAC 57.641 43.478 0.00 0.00 44.98 3.06
225 226 6.581388 AATTCCTGAAGGATTGGAGTATCA 57.419 37.500 0.00 0.00 44.98 2.15
226 227 7.269477 CAAATTCCTGAAGGATTGGAGTATC 57.731 40.000 0.00 0.00 44.98 2.24
233 234 9.723601 TTTATTTTCCAAATTCCTGAAGGATTG 57.276 29.630 0.00 3.02 44.98 2.67
235 236 9.725019 GTTTTATTTTCCAAATTCCTGAAGGAT 57.275 29.630 0.00 0.00 44.98 3.24
236 237 8.709308 TGTTTTATTTTCCAAATTCCTGAAGGA 58.291 29.630 0.00 0.00 43.73 3.36
237 238 8.900983 TGTTTTATTTTCCAAATTCCTGAAGG 57.099 30.769 0.00 0.00 0.00 3.46
241 242 9.729023 GGTTTTGTTTTATTTTCCAAATTCCTG 57.271 29.630 0.00 0.00 0.00 3.86
242 243 8.908903 GGGTTTTGTTTTATTTTCCAAATTCCT 58.091 29.630 0.00 0.00 0.00 3.36
243 244 7.858382 CGGGTTTTGTTTTATTTTCCAAATTCC 59.142 33.333 0.00 0.00 0.00 3.01
244 245 8.613482 TCGGGTTTTGTTTTATTTTCCAAATTC 58.387 29.630 0.00 0.00 0.00 2.17
245 246 8.507524 TCGGGTTTTGTTTTATTTTCCAAATT 57.492 26.923 0.00 0.00 0.00 1.82
246 247 8.684386 ATCGGGTTTTGTTTTATTTTCCAAAT 57.316 26.923 0.00 0.00 0.00 2.32
247 248 9.609346 TTATCGGGTTTTGTTTTATTTTCCAAA 57.391 25.926 0.00 0.00 0.00 3.28
248 249 9.609346 TTTATCGGGTTTTGTTTTATTTTCCAA 57.391 25.926 0.00 0.00 0.00 3.53
249 250 9.780186 ATTTATCGGGTTTTGTTTTATTTTCCA 57.220 25.926 0.00 0.00 0.00 3.53
254 255 8.862074 GCGTTATTTATCGGGTTTTGTTTTATT 58.138 29.630 0.00 0.00 0.00 1.40
255 256 8.027771 TGCGTTATTTATCGGGTTTTGTTTTAT 58.972 29.630 0.00 0.00 0.00 1.40
256 257 7.365741 TGCGTTATTTATCGGGTTTTGTTTTA 58.634 30.769 0.00 0.00 0.00 1.52
257 258 6.214399 TGCGTTATTTATCGGGTTTTGTTTT 58.786 32.000 0.00 0.00 0.00 2.43
258 259 5.770417 TGCGTTATTTATCGGGTTTTGTTT 58.230 33.333 0.00 0.00 0.00 2.83
259 260 5.373981 TGCGTTATTTATCGGGTTTTGTT 57.626 34.783 0.00 0.00 0.00 2.83
260 261 5.449451 GGATGCGTTATTTATCGGGTTTTGT 60.449 40.000 0.00 0.00 0.00 2.83
261 262 4.973663 GGATGCGTTATTTATCGGGTTTTG 59.026 41.667 0.00 0.00 0.00 2.44
262 263 4.260866 CGGATGCGTTATTTATCGGGTTTT 60.261 41.667 0.00 0.00 0.00 2.43
263 264 3.249080 CGGATGCGTTATTTATCGGGTTT 59.751 43.478 0.00 0.00 0.00 3.27
264 265 2.803956 CGGATGCGTTATTTATCGGGTT 59.196 45.455 0.00 0.00 0.00 4.11
265 266 2.409975 CGGATGCGTTATTTATCGGGT 58.590 47.619 0.00 0.00 0.00 5.28
266 267 1.730064 CCGGATGCGTTATTTATCGGG 59.270 52.381 5.72 0.00 35.77 5.14
267 268 1.730064 CCCGGATGCGTTATTTATCGG 59.270 52.381 0.73 0.00 0.00 4.18
268 269 1.127951 GCCCGGATGCGTTATTTATCG 59.872 52.381 0.73 0.00 0.00 2.92
269 270 2.894307 GCCCGGATGCGTTATTTATC 57.106 50.000 0.73 0.00 0.00 1.75
280 281 4.082523 ACCTGTGACGCCCGGATG 62.083 66.667 0.73 0.00 0.00 3.51
281 282 4.082523 CACCTGTGACGCCCGGAT 62.083 66.667 0.73 0.00 0.00 4.18
284 285 4.293648 TGACACCTGTGACGCCCG 62.294 66.667 3.94 0.00 0.00 6.13
285 286 2.665185 GTGACACCTGTGACGCCC 60.665 66.667 3.94 0.00 31.48 6.13
286 287 1.956170 CTGTGACACCTGTGACGCC 60.956 63.158 3.94 0.00 34.84 5.68
287 288 1.956170 CCTGTGACACCTGTGACGC 60.956 63.158 3.94 5.36 34.84 5.19
288 289 0.875908 CACCTGTGACACCTGTGACG 60.876 60.000 15.78 0.00 34.84 4.35
289 290 0.178068 ACACCTGTGACACCTGTGAC 59.822 55.000 23.63 0.00 32.67 3.67
290 291 0.464036 GACACCTGTGACACCTGTGA 59.536 55.000 23.63 0.00 0.00 3.58
291 292 0.177836 TGACACCTGTGACACCTGTG 59.822 55.000 18.06 18.06 30.93 3.66
292 293 0.178068 GTGACACCTGTGACACCTGT 59.822 55.000 18.00 1.82 45.65 4.00
293 294 2.992089 GTGACACCTGTGACACCTG 58.008 57.895 18.00 0.00 45.65 4.00
297 298 0.177836 CACCTGTGACACCTGTGACA 59.822 55.000 15.78 0.95 39.74 3.58
298 299 0.178068 ACACCTGTGACACCTGTGAC 59.822 55.000 23.63 0.00 32.67 3.67
299 300 0.464036 GACACCTGTGACACCTGTGA 59.536 55.000 23.63 0.00 0.00 3.58
300 301 0.875908 CGACACCTGTGACACCTGTG 60.876 60.000 18.06 18.06 0.00 3.66
301 302 1.327690 ACGACACCTGTGACACCTGT 61.328 55.000 3.94 1.82 0.00 4.00
302 303 0.875908 CACGACACCTGTGACACCTG 60.876 60.000 3.94 0.00 39.73 4.00
303 304 1.441729 CACGACACCTGTGACACCT 59.558 57.895 3.94 0.00 39.73 4.00
304 305 2.244651 GCACGACACCTGTGACACC 61.245 63.158 3.94 0.00 39.73 4.16
305 306 1.520564 TGCACGACACCTGTGACAC 60.521 57.895 3.94 0.00 39.73 3.67
306 307 1.520564 GTGCACGACACCTGTGACA 60.521 57.895 0.00 0.00 44.02 3.58
307 308 3.319904 GTGCACGACACCTGTGAC 58.680 61.111 0.00 0.00 44.02 3.67
320 321 3.702048 GGGTAGGGACGCTGTGCA 61.702 66.667 1.57 0.00 35.67 4.57
322 323 1.079127 CTTGGGTAGGGACGCTGTG 60.079 63.158 1.57 0.00 39.24 3.66
350 351 3.347216 AGTTCAAGATGGGTGTATGCAC 58.653 45.455 5.22 5.22 44.53 4.57
422 426 7.918033 CCGGTGCACATATTAAATAACAATCAA 59.082 33.333 20.43 0.00 0.00 2.57
430 434 6.091577 CGCTAATCCGGTGCACATATTAAATA 59.908 38.462 20.43 0.36 0.00 1.40
503 520 8.472007 TCCCTAAAAGACAAGCATAAGAAAAA 57.528 30.769 0.00 0.00 0.00 1.94
504 521 7.176690 CCTCCCTAAAAGACAAGCATAAGAAAA 59.823 37.037 0.00 0.00 0.00 2.29
505 522 6.659242 CCTCCCTAAAAGACAAGCATAAGAAA 59.341 38.462 0.00 0.00 0.00 2.52
506 523 6.180472 CCTCCCTAAAAGACAAGCATAAGAA 58.820 40.000 0.00 0.00 0.00 2.52
514 531 2.762535 TCGCCTCCCTAAAAGACAAG 57.237 50.000 0.00 0.00 0.00 3.16
515 532 2.838202 AGATCGCCTCCCTAAAAGACAA 59.162 45.455 0.00 0.00 0.00 3.18
531 548 4.096732 TCGCACCATATATGTGAGATCG 57.903 45.455 11.73 8.56 32.87 3.69
582 600 8.514594 GGTAAGTTCTGATTCAATTCAATCACA 58.485 33.333 0.00 0.00 37.77 3.58
619 637 7.180946 TCCCATTAAGAGAGAGATCTTGTTTCA 59.819 37.037 0.00 0.00 39.81 2.69
661 680 0.104620 ACCACCCACCACTCTACCTT 60.105 55.000 0.00 0.00 0.00 3.50
665 684 1.275666 CATCACCACCCACCACTCTA 58.724 55.000 0.00 0.00 0.00 2.43
668 687 2.436109 GCATCACCACCCACCACT 59.564 61.111 0.00 0.00 0.00 4.00
700 719 6.873605 CGCCTCAACTATCACCATATATTTGA 59.126 38.462 0.00 0.00 32.95 2.69
701 720 6.092670 CCGCCTCAACTATCACCATATATTTG 59.907 42.308 0.00 0.00 0.00 2.32
734 753 2.366916 CGATAGCTTCCCTTCCACAGAT 59.633 50.000 0.00 0.00 0.00 2.90
735 754 1.757118 CGATAGCTTCCCTTCCACAGA 59.243 52.381 0.00 0.00 0.00 3.41
753 772 3.012518 CCTACTCGTAAAAGGGAGTCGA 58.987 50.000 0.00 0.00 42.27 4.20
847 868 4.018649 TGTATGCGCATGAAAAGTGATG 57.981 40.909 32.48 0.00 0.00 3.07
917 938 2.691011 ACACACCGTTGGCACTATTTTT 59.309 40.909 0.00 0.00 0.00 1.94
918 939 2.303175 ACACACCGTTGGCACTATTTT 58.697 42.857 0.00 0.00 0.00 1.82
954 975 4.175962 TCCTGGGGAGATGTTTCTTTACT 58.824 43.478 0.00 0.00 30.30 2.24
964 985 1.761784 CACTCTCTTCCTGGGGAGATG 59.238 57.143 16.38 13.45 37.85 2.90
974 995 1.423395 CGTGTGCTTCACTCTCTTCC 58.577 55.000 9.94 0.00 44.16 3.46
1134 1205 2.350197 GCGGATGCATAGATCTTGTTGC 60.350 50.000 0.00 9.18 42.15 4.17
1150 1221 0.327259 CCCCAGATCATGATGCGGAT 59.673 55.000 14.30 0.00 0.00 4.18
1230 1301 2.106683 GGATTCCACGGCGAACCAG 61.107 63.158 16.62 0.00 34.57 4.00
1251 1322 3.238241 GCGATCCGTGTGACGTCG 61.238 66.667 11.62 0.00 41.15 5.12
1454 1525 1.860950 CCGACAGCCGATTCATACAAG 59.139 52.381 0.00 0.00 41.76 3.16
1570 1641 2.766263 ACCGCCTCTTGATCTATCACAA 59.234 45.455 0.00 0.00 36.36 3.33
1581 1652 1.870901 GCGTACGTACCGCCTCTTG 60.871 63.158 23.13 9.18 45.20 3.02
1589 1660 0.388907 TGCTCTTTGGCGTACGTACC 60.389 55.000 19.67 11.03 34.52 3.34
1612 1683 3.487544 GCGCACCCAATGTCTCTTTTATC 60.488 47.826 0.30 0.00 0.00 1.75
1619 1690 3.499737 CGGCGCACCCAATGTCTC 61.500 66.667 10.83 0.00 0.00 3.36
1681 1752 0.034477 CCTAACCCGGCACCAAATCT 60.034 55.000 0.00 0.00 0.00 2.40
1717 1788 8.932791 CGAATTTGAGGAAGCTTAGTAACTTAA 58.067 33.333 0.00 0.00 0.00 1.85
1719 1790 7.159372 TCGAATTTGAGGAAGCTTAGTAACTT 58.841 34.615 0.00 0.00 0.00 2.66
1721 1792 6.963049 TCGAATTTGAGGAAGCTTAGTAAC 57.037 37.500 0.00 0.00 0.00 2.50
1749 1820 5.602561 TGCCCTAATACTATGACACATCAGT 59.397 40.000 0.00 0.00 38.57 3.41
1765 1836 3.706086 GGTTGTCATTGGAATGCCCTAAT 59.294 43.478 0.00 0.00 36.36 1.73
1780 1852 3.491792 GGAAGAATTTTTGCGGGTTGTCA 60.492 43.478 0.00 0.00 0.00 3.58
1830 1903 0.545646 TCCCGCATCCATGTTCATGA 59.454 50.000 13.51 0.00 0.00 3.07
1851 1924 5.360714 AGTTGTTGTGAAAATGGATGACTGT 59.639 36.000 0.00 0.00 0.00 3.55
1853 1926 5.277974 CGAGTTGTTGTGAAAATGGATGACT 60.278 40.000 0.00 0.00 0.00 3.41
1855 1928 4.819088 TCGAGTTGTTGTGAAAATGGATGA 59.181 37.500 0.00 0.00 0.00 2.92
1859 1948 4.041723 GGTTCGAGTTGTTGTGAAAATGG 58.958 43.478 0.00 0.00 0.00 3.16
1904 1993 9.747898 ATTATGTTTATATGAATTCCGGCCTTA 57.252 29.630 0.00 0.00 0.00 2.69
1906 1995 7.122650 CCATTATGTTTATATGAATTCCGGCCT 59.877 37.037 0.00 0.00 0.00 5.19
1928 2017 7.961351 TCCGCCATTTTTATATGAAATCCATT 58.039 30.769 0.00 0.00 36.71 3.16
1973 2063 8.723311 CCACTTTGATGTAAATGCAATGAAATT 58.277 29.630 0.00 0.00 36.63 1.82
1982 2072 5.648092 ACTAGGACCACTTTGATGTAAATGC 59.352 40.000 0.00 0.00 0.00 3.56
1995 2086 0.707616 AGAGCTGGACTAGGACCACT 59.292 55.000 0.00 8.97 33.57 4.00
1996 2087 0.820871 CAGAGCTGGACTAGGACCAC 59.179 60.000 0.00 5.27 33.57 4.16
2049 2145 2.633488 GAGGAAGACAAAGGGATTCCG 58.367 52.381 0.00 0.00 44.82 4.30
2050 2146 2.027100 ACGAGGAAGACAAAGGGATTCC 60.027 50.000 0.00 0.00 41.29 3.01
2070 2170 3.379865 TAATCGGGCTGCCGGACAC 62.380 63.158 28.21 6.45 35.74 3.67
2087 2187 2.656069 GGCTCCTGGCAGTTCGGTA 61.656 63.158 14.43 0.00 44.01 4.02
2240 2345 1.273886 GGTTCTTCTCTTGCGAGGACT 59.726 52.381 0.00 0.00 37.86 3.85
2270 2375 2.921754 GCCGGCGTACATAGAATATGTC 59.078 50.000 12.58 0.00 33.76 3.06
2271 2376 2.670229 CGCCGGCGTACATAGAATATGT 60.670 50.000 39.71 7.52 36.13 2.29
2272 2377 1.917955 CGCCGGCGTACATAGAATATG 59.082 52.381 39.71 7.29 34.35 1.78
2275 2380 4.647654 CGCCGGCGTACATAGAAT 57.352 55.556 39.71 0.00 34.35 2.40
2379 2486 0.320073 CGAAGAGTTGGTAACCGCCA 60.320 55.000 0.00 0.00 36.62 5.69
2386 2493 1.544691 GTGGAGAGCGAAGAGTTGGTA 59.455 52.381 0.00 0.00 0.00 3.25
2462 2570 0.846401 CATCGCTACCGTCGACAATG 59.154 55.000 17.16 5.77 38.88 2.82
2528 2667 0.691078 GCCCACCCTATGAGGAGTGA 60.691 60.000 12.86 0.00 38.20 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.