Multiple sequence alignment - TraesCS3B01G101700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G101700 chr3B 100.000 4697 0 0 1 4697 68468076 68463380 0.000000e+00 8674
1 TraesCS3B01G101700 chr3B 79.810 2843 464 59 881 3695 571451003 571453763 0.000000e+00 1969
2 TraesCS3B01G101700 chr3B 96.503 143 5 0 4555 4697 778242546 778242688 2.180000e-58 237
3 TraesCS3B01G101700 chr3D 90.571 3680 290 30 881 4544 43801774 43798136 0.000000e+00 4820
4 TraesCS3B01G101700 chr3D 80.967 331 36 17 14 321 43802393 43802067 2.180000e-58 237
5 TraesCS3B01G101700 chr3A 91.888 3353 228 25 881 4214 55723787 55720460 0.000000e+00 4645
6 TraesCS3B01G101700 chr3A 89.710 379 26 11 4186 4555 55720447 55720073 5.500000e-129 472
7 TraesCS3B01G101700 chr3A 81.172 239 29 11 293 521 55724079 55723847 1.340000e-40 178
8 TraesCS3B01G101700 chr6B 84.136 2698 388 22 1007 3676 95431303 95433988 0.000000e+00 2575
9 TraesCS3B01G101700 chrUn 97.260 146 4 0 4552 4697 214932103 214931958 1.010000e-61 248
10 TraesCS3B01G101700 chrUn 97.260 146 4 0 4552 4697 379540262 379540407 1.010000e-61 248
11 TraesCS3B01G101700 chrUn 96.454 141 5 0 4554 4694 307295279 307295419 2.830000e-57 233
12 TraesCS3B01G101700 chr7B 97.260 146 4 0 4552 4697 408936061 408936206 1.010000e-61 248
13 TraesCS3B01G101700 chr5A 96.528 144 5 0 4554 4697 216670943 216670800 6.070000e-59 239
14 TraesCS3B01G101700 chr2A 95.862 145 6 0 4553 4697 777753637 777753781 7.860000e-58 235
15 TraesCS3B01G101700 chr2A 95.139 144 7 0 4554 4697 197673405 197673262 1.310000e-55 228
16 TraesCS3B01G101700 chr7A 95.833 144 6 0 4554 4697 576353150 576353007 2.830000e-57 233


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G101700 chr3B 68463380 68468076 4696 True 8674.0 8674 100.000 1 4697 1 chr3B.!!$R1 4696
1 TraesCS3B01G101700 chr3B 571451003 571453763 2760 False 1969.0 1969 79.810 881 3695 1 chr3B.!!$F1 2814
2 TraesCS3B01G101700 chr3D 43798136 43802393 4257 True 2528.5 4820 85.769 14 4544 2 chr3D.!!$R1 4530
3 TraesCS3B01G101700 chr3A 55720073 55724079 4006 True 1765.0 4645 87.590 293 4555 3 chr3A.!!$R1 4262
4 TraesCS3B01G101700 chr6B 95431303 95433988 2685 False 2575.0 2575 84.136 1007 3676 1 chr6B.!!$F1 2669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 237 0.032403 TGCTCCACATGTTTGCTTGC 59.968 50.0 13.37 6.2 0.00 4.01 F
618 703 0.039180 TCTCTTCGGGTGAGTAGGCA 59.961 55.0 0.00 0.0 33.59 4.75 F
706 791 0.108281 GGGGGTTTCGCTAGACTGTC 60.108 60.0 0.00 0.0 0.00 3.51 F
752 837 0.110486 TTTTCGGCCTGCTCTTCCTT 59.890 50.0 0.00 0.0 0.00 3.36 F
988 1101 0.110486 GGGGCTGACAAAACAGGAGA 59.890 55.0 0.00 0.0 38.22 3.71 F
991 1104 0.235926 GCTGACAAAACAGGAGACGC 59.764 55.0 0.00 0.0 38.22 5.19 F
2954 3105 0.320771 AAATTCTCTGCGCTGGACGT 60.321 50.0 14.70 0.0 46.11 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 1752 0.749454 GTGCCCCAGCCAGTAAGATG 60.749 60.000 0.00 0.00 38.69 2.90 R
2333 2471 0.251354 CTCCAGGTGTCCACATCCAG 59.749 60.000 0.00 0.00 0.00 3.86 R
2639 2780 2.969950 TGTAGGTTACTGACAGCACCTT 59.030 45.455 25.02 13.53 40.32 3.50 R
2954 3105 0.249120 ATCGAAATCACCGGACTGCA 59.751 50.000 9.46 0.00 0.00 4.41 R
3000 3151 4.018050 ACCCCTTCAAGATCATTAGCAACT 60.018 41.667 0.00 0.00 0.00 3.16 R
3001 3152 4.273318 ACCCCTTCAAGATCATTAGCAAC 58.727 43.478 0.00 0.00 0.00 4.17 R
4606 4829 0.034198 TTGTGTCGGGAATTCGCAGA 59.966 50.000 20.97 15.59 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.019564 CTCTTGCCGATTTCCAGGAAAT 58.980 45.455 25.18 25.18 43.77 2.17
65 66 4.580167 TCTTGCCGATTTCCAGGAAATATG 59.420 41.667 24.99 19.60 41.56 1.78
67 68 3.117701 TGCCGATTTCCAGGAAATATGGA 60.118 43.478 32.15 22.68 45.15 3.41
128 141 2.659016 CCGCTCCTGCAGTTCAGA 59.341 61.111 13.81 1.29 45.72 3.27
146 159 3.817084 TCAGACATTGTTTCTCTGCAAGG 59.183 43.478 0.00 0.00 32.88 3.61
185 198 3.164028 GCAACAACCTTTGCGTCTC 57.836 52.632 0.00 0.00 42.38 3.36
188 201 2.719798 CAACAACCTTTGCGTCTCTTG 58.280 47.619 0.00 0.00 0.00 3.02
192 205 0.468226 ACCTTTGCGTCTCTTGTCCA 59.532 50.000 0.00 0.00 0.00 4.02
194 207 1.466167 CCTTTGCGTCTCTTGTCCATG 59.534 52.381 0.00 0.00 0.00 3.66
195 208 1.466167 CTTTGCGTCTCTTGTCCATGG 59.534 52.381 4.97 4.97 0.00 3.66
202 215 3.806521 CGTCTCTTGTCCATGGATCAATC 59.193 47.826 19.62 4.90 0.00 2.67
224 237 0.032403 TGCTCCACATGTTTGCTTGC 59.968 50.000 13.37 6.20 0.00 4.01
225 238 0.316204 GCTCCACATGTTTGCTTGCT 59.684 50.000 0.00 0.00 0.00 3.91
226 239 1.541147 GCTCCACATGTTTGCTTGCTA 59.459 47.619 0.00 0.00 0.00 3.49
249 268 2.102070 ACAGTGTGTTGTCAAACGGA 57.898 45.000 0.00 0.00 39.30 4.69
251 270 1.063469 CAGTGTGTTGTCAAACGGACC 59.937 52.381 0.00 0.00 46.38 4.46
252 271 1.065709 AGTGTGTTGTCAAACGGACCT 60.066 47.619 0.00 0.00 46.38 3.85
253 272 2.168936 AGTGTGTTGTCAAACGGACCTA 59.831 45.455 0.00 0.00 46.38 3.08
254 273 2.937799 GTGTGTTGTCAAACGGACCTAA 59.062 45.455 0.00 0.00 46.38 2.69
276 295 2.317040 CTAAGCTAGGAACCGGATCCA 58.683 52.381 30.29 16.18 42.27 3.41
279 298 0.831307 GCTAGGAACCGGATCCAGTT 59.169 55.000 30.29 13.34 42.27 3.16
280 299 1.209747 GCTAGGAACCGGATCCAGTTT 59.790 52.381 30.29 13.80 42.27 2.66
281 300 2.355818 GCTAGGAACCGGATCCAGTTTT 60.356 50.000 30.29 13.44 42.27 2.43
282 301 2.200373 AGGAACCGGATCCAGTTTTG 57.800 50.000 30.29 0.00 42.27 2.44
283 302 1.423921 AGGAACCGGATCCAGTTTTGT 59.576 47.619 30.29 7.05 42.27 2.83
285 304 2.228103 GGAACCGGATCCAGTTTTGTTC 59.772 50.000 24.93 13.19 39.42 3.18
286 305 2.649531 ACCGGATCCAGTTTTGTTCA 57.350 45.000 9.46 0.00 0.00 3.18
287 306 2.504367 ACCGGATCCAGTTTTGTTCAG 58.496 47.619 9.46 0.00 0.00 3.02
289 308 3.071892 ACCGGATCCAGTTTTGTTCAGTA 59.928 43.478 9.46 0.00 0.00 2.74
291 310 3.125316 CGGATCCAGTTTTGTTCAGTAGC 59.875 47.826 13.41 0.00 0.00 3.58
302 332 6.909550 TTTGTTCAGTAGCACCCATATTTT 57.090 33.333 0.00 0.00 0.00 1.82
303 333 5.895636 TGTTCAGTAGCACCCATATTTTG 57.104 39.130 0.00 0.00 0.00 2.44
312 342 4.646492 AGCACCCATATTTTGTCAATCTCC 59.354 41.667 0.00 0.00 0.00 3.71
321 351 6.729690 ATTTTGTCAATCTCCACAAGGAAA 57.270 33.333 0.00 0.00 45.19 3.13
322 352 5.514274 TTTGTCAATCTCCACAAGGAAAC 57.486 39.130 0.00 0.00 45.19 2.78
334 364 5.425217 TCCACAAGGAAACTATCTAGCATGA 59.575 40.000 0.00 0.00 42.23 3.07
337 367 6.988580 CACAAGGAAACTATCTAGCATGATCA 59.011 38.462 0.00 0.00 42.68 2.92
342 372 6.426328 GGAAACTATCTAGCATGATCACTTGG 59.574 42.308 0.00 0.00 0.00 3.61
343 373 5.480642 ACTATCTAGCATGATCACTTGGG 57.519 43.478 0.00 0.00 0.00 4.12
347 377 4.711399 TCTAGCATGATCACTTGGGATTG 58.289 43.478 0.00 0.00 0.00 2.67
364 439 3.376918 GCCTCCCACAGCTTTGCC 61.377 66.667 0.00 0.00 0.00 4.52
366 441 3.058160 CTCCCACAGCTTTGCCCG 61.058 66.667 0.00 0.00 0.00 6.13
369 444 4.047059 CCACAGCTTTGCCCGCAG 62.047 66.667 0.00 0.00 0.00 5.18
373 449 1.968017 CAGCTTTGCCCGCAGAAGA 60.968 57.895 12.67 0.00 0.00 2.87
376 452 1.916697 GCTTTGCCCGCAGAAGAGTC 61.917 60.000 12.67 0.00 0.00 3.36
380 456 0.901827 TGCCCGCAGAAGAGTCAATA 59.098 50.000 0.00 0.00 0.00 1.90
476 557 2.034305 CAGCTAATTGGGATGCTGCTTC 59.966 50.000 6.97 6.97 44.72 3.86
484 566 4.631773 ATGCTGCTTCGAGTGCAT 57.368 50.000 14.05 11.67 39.86 3.96
517 602 5.904362 GGAAATGCCTAAGAACATCAACT 57.096 39.130 0.00 0.00 0.00 3.16
519 604 6.786207 GGAAATGCCTAAGAACATCAACTAC 58.214 40.000 0.00 0.00 0.00 2.73
520 605 6.374333 GGAAATGCCTAAGAACATCAACTACA 59.626 38.462 0.00 0.00 0.00 2.74
521 606 6.992063 AATGCCTAAGAACATCAACTACAG 57.008 37.500 0.00 0.00 0.00 2.74
522 607 5.738619 TGCCTAAGAACATCAACTACAGA 57.261 39.130 0.00 0.00 0.00 3.41
523 608 6.299805 TGCCTAAGAACATCAACTACAGAT 57.700 37.500 0.00 0.00 0.00 2.90
524 609 7.418337 TGCCTAAGAACATCAACTACAGATA 57.582 36.000 0.00 0.00 0.00 1.98
525 610 7.492524 TGCCTAAGAACATCAACTACAGATAG 58.507 38.462 0.00 0.00 34.25 2.08
526 611 7.124298 TGCCTAAGAACATCAACTACAGATAGT 59.876 37.037 0.00 0.00 43.91 2.12
527 612 7.436673 GCCTAAGAACATCAACTACAGATAGTG 59.563 40.741 0.00 0.00 41.00 2.74
528 613 8.470805 CCTAAGAACATCAACTACAGATAGTGT 58.529 37.037 0.00 0.00 41.00 3.55
531 616 8.349568 AGAACATCAACTACAGATAGTGTACA 57.650 34.615 0.00 0.00 41.00 2.90
532 617 8.244802 AGAACATCAACTACAGATAGTGTACAC 58.755 37.037 18.56 18.56 41.00 2.90
533 618 6.864342 ACATCAACTACAGATAGTGTACACC 58.136 40.000 22.28 7.49 41.00 4.16
534 619 6.663953 ACATCAACTACAGATAGTGTACACCT 59.336 38.462 22.28 10.34 41.00 4.00
535 620 7.832685 ACATCAACTACAGATAGTGTACACCTA 59.167 37.037 22.28 13.76 41.00 3.08
536 621 7.860918 TCAACTACAGATAGTGTACACCTAG 57.139 40.000 22.28 12.76 41.00 3.02
537 622 7.627311 TCAACTACAGATAGTGTACACCTAGA 58.373 38.462 22.28 6.20 41.00 2.43
538 623 7.551974 TCAACTACAGATAGTGTACACCTAGAC 59.448 40.741 22.28 9.73 41.00 2.59
539 624 6.047870 ACTACAGATAGTGTACACCTAGACG 58.952 44.000 22.28 9.50 40.32 4.18
540 625 5.095145 ACAGATAGTGTACACCTAGACGA 57.905 43.478 22.28 0.16 37.75 4.20
541 626 5.682659 ACAGATAGTGTACACCTAGACGAT 58.317 41.667 22.28 3.91 37.75 3.73
542 627 5.527951 ACAGATAGTGTACACCTAGACGATG 59.472 44.000 22.28 12.34 37.75 3.84
543 628 5.049336 CAGATAGTGTACACCTAGACGATGG 60.049 48.000 22.28 0.00 0.00 3.51
544 629 1.749634 AGTGTACACCTAGACGATGGC 59.250 52.381 22.28 0.00 0.00 4.40
545 630 0.736636 TGTACACCTAGACGATGGCG 59.263 55.000 0.00 0.00 44.79 5.69
546 631 0.594284 GTACACCTAGACGATGGCGC 60.594 60.000 0.00 0.00 42.48 6.53
547 632 0.750546 TACACCTAGACGATGGCGCT 60.751 55.000 7.64 0.00 42.48 5.92
548 633 1.141881 CACCTAGACGATGGCGCTT 59.858 57.895 7.64 0.00 42.48 4.68
549 634 1.141881 ACCTAGACGATGGCGCTTG 59.858 57.895 7.64 0.00 42.48 4.01
550 635 2.240500 CCTAGACGATGGCGCTTGC 61.241 63.158 7.64 0.00 42.48 4.01
551 636 2.580470 CTAGACGATGGCGCTTGCG 61.580 63.158 7.64 10.90 42.48 4.85
563 648 2.978010 CTTGCGGGCGTCCTGTTT 60.978 61.111 3.66 0.00 31.34 2.83
564 649 2.966309 CTTGCGGGCGTCCTGTTTC 61.966 63.158 3.66 0.00 31.34 2.78
566 651 4.699522 GCGGGCGTCCTGTTTCCT 62.700 66.667 3.66 0.00 31.34 3.36
567 652 2.032071 CGGGCGTCCTGTTTCCTT 59.968 61.111 3.66 0.00 0.00 3.36
568 653 2.033194 CGGGCGTCCTGTTTCCTTC 61.033 63.158 3.66 0.00 0.00 3.46
569 654 1.375326 GGGCGTCCTGTTTCCTTCT 59.625 57.895 0.00 0.00 0.00 2.85
570 655 0.250770 GGGCGTCCTGTTTCCTTCTT 60.251 55.000 0.00 0.00 0.00 2.52
571 656 0.875059 GGCGTCCTGTTTCCTTCTTG 59.125 55.000 0.00 0.00 0.00 3.02
572 657 1.542547 GGCGTCCTGTTTCCTTCTTGA 60.543 52.381 0.00 0.00 0.00 3.02
573 658 2.218603 GCGTCCTGTTTCCTTCTTGAA 58.781 47.619 0.00 0.00 0.00 2.69
574 659 2.224314 GCGTCCTGTTTCCTTCTTGAAG 59.776 50.000 3.55 3.55 0.00 3.02
575 660 2.808543 CGTCCTGTTTCCTTCTTGAAGG 59.191 50.000 20.21 20.21 41.35 3.46
576 661 2.554462 GTCCTGTTTCCTTCTTGAAGGC 59.446 50.000 21.16 10.47 39.80 4.35
577 662 1.537202 CCTGTTTCCTTCTTGAAGGCG 59.463 52.381 21.16 9.03 39.80 5.52
578 663 2.222027 CTGTTTCCTTCTTGAAGGCGT 58.778 47.619 21.16 0.00 39.80 5.68
579 664 2.218603 TGTTTCCTTCTTGAAGGCGTC 58.781 47.619 21.16 14.20 39.80 5.19
580 665 2.158813 TGTTTCCTTCTTGAAGGCGTCT 60.159 45.455 21.16 0.00 39.80 4.18
581 666 2.457366 TTCCTTCTTGAAGGCGTCTC 57.543 50.000 21.16 0.00 39.80 3.36
582 667 0.608640 TCCTTCTTGAAGGCGTCTCC 59.391 55.000 21.16 0.00 39.80 3.71
583 668 0.737715 CCTTCTTGAAGGCGTCTCCG 60.738 60.000 15.43 0.00 40.77 4.63
584 669 0.243907 CTTCTTGAAGGCGTCTCCGA 59.756 55.000 1.41 0.00 40.77 4.55
585 670 0.677288 TTCTTGAAGGCGTCTCCGAA 59.323 50.000 1.41 0.00 40.77 4.30
586 671 0.243907 TCTTGAAGGCGTCTCCGAAG 59.756 55.000 1.41 0.00 40.77 3.79
600 685 3.516578 CGAAGGTCCCACTCAGTTC 57.483 57.895 0.00 0.00 0.00 3.01
601 686 0.969894 CGAAGGTCCCACTCAGTTCT 59.030 55.000 0.00 0.00 0.00 3.01
602 687 1.067495 CGAAGGTCCCACTCAGTTCTC 60.067 57.143 0.00 0.00 0.00 2.87
603 688 2.252714 GAAGGTCCCACTCAGTTCTCT 58.747 52.381 0.00 0.00 0.00 3.10
604 689 2.407340 AGGTCCCACTCAGTTCTCTT 57.593 50.000 0.00 0.00 0.00 2.85
605 690 2.252714 AGGTCCCACTCAGTTCTCTTC 58.747 52.381 0.00 0.00 0.00 2.87
606 691 1.067495 GGTCCCACTCAGTTCTCTTCG 60.067 57.143 0.00 0.00 0.00 3.79
607 692 1.067495 GTCCCACTCAGTTCTCTTCGG 60.067 57.143 0.00 0.00 0.00 4.30
608 693 0.247736 CCCACTCAGTTCTCTTCGGG 59.752 60.000 0.00 0.00 0.00 5.14
609 694 0.969894 CCACTCAGTTCTCTTCGGGT 59.030 55.000 0.00 0.00 0.00 5.28
610 695 1.337260 CCACTCAGTTCTCTTCGGGTG 60.337 57.143 0.00 0.00 0.00 4.61
611 696 1.613925 CACTCAGTTCTCTTCGGGTGA 59.386 52.381 0.00 0.00 0.00 4.02
612 697 1.889829 ACTCAGTTCTCTTCGGGTGAG 59.110 52.381 0.00 0.00 37.91 3.51
613 698 1.889829 CTCAGTTCTCTTCGGGTGAGT 59.110 52.381 0.00 0.00 33.59 3.41
614 699 3.082548 CTCAGTTCTCTTCGGGTGAGTA 58.917 50.000 0.00 0.00 33.59 2.59
615 700 3.082548 TCAGTTCTCTTCGGGTGAGTAG 58.917 50.000 0.00 0.00 33.59 2.57
616 701 2.164624 CAGTTCTCTTCGGGTGAGTAGG 59.835 54.545 0.00 0.00 33.59 3.18
617 702 1.135053 GTTCTCTTCGGGTGAGTAGGC 60.135 57.143 0.00 0.00 33.59 3.93
618 703 0.039180 TCTCTTCGGGTGAGTAGGCA 59.961 55.000 0.00 0.00 33.59 4.75
619 704 0.457851 CTCTTCGGGTGAGTAGGCAG 59.542 60.000 0.00 0.00 0.00 4.85
620 705 0.251653 TCTTCGGGTGAGTAGGCAGT 60.252 55.000 0.00 0.00 0.00 4.40
621 706 0.108615 CTTCGGGTGAGTAGGCAGTG 60.109 60.000 0.00 0.00 0.00 3.66
622 707 1.541310 TTCGGGTGAGTAGGCAGTGG 61.541 60.000 0.00 0.00 0.00 4.00
623 708 1.982395 CGGGTGAGTAGGCAGTGGA 60.982 63.158 0.00 0.00 0.00 4.02
624 709 1.330655 CGGGTGAGTAGGCAGTGGAT 61.331 60.000 0.00 0.00 0.00 3.41
625 710 1.789523 GGGTGAGTAGGCAGTGGATA 58.210 55.000 0.00 0.00 0.00 2.59
626 711 2.330216 GGGTGAGTAGGCAGTGGATAT 58.670 52.381 0.00 0.00 0.00 1.63
627 712 2.706190 GGGTGAGTAGGCAGTGGATATT 59.294 50.000 0.00 0.00 0.00 1.28
628 713 3.495100 GGGTGAGTAGGCAGTGGATATTG 60.495 52.174 0.00 0.00 0.00 1.90
629 714 3.388024 GGTGAGTAGGCAGTGGATATTGA 59.612 47.826 0.00 0.00 0.00 2.57
630 715 4.502259 GGTGAGTAGGCAGTGGATATTGAG 60.502 50.000 0.00 0.00 0.00 3.02
631 716 4.100189 GTGAGTAGGCAGTGGATATTGAGT 59.900 45.833 0.00 0.00 0.00 3.41
632 717 4.716784 TGAGTAGGCAGTGGATATTGAGTT 59.283 41.667 0.00 0.00 0.00 3.01
633 718 5.028549 AGTAGGCAGTGGATATTGAGTTG 57.971 43.478 0.00 0.00 0.00 3.16
634 719 3.287867 AGGCAGTGGATATTGAGTTGG 57.712 47.619 0.00 0.00 0.00 3.77
635 720 1.678101 GGCAGTGGATATTGAGTTGGC 59.322 52.381 0.00 0.00 0.00 4.52
636 721 1.678101 GCAGTGGATATTGAGTTGGCC 59.322 52.381 0.00 0.00 0.00 5.36
637 722 1.942657 CAGTGGATATTGAGTTGGCCG 59.057 52.381 0.00 0.00 0.00 6.13
638 723 1.134098 AGTGGATATTGAGTTGGCCGG 60.134 52.381 0.00 0.00 0.00 6.13
639 724 0.465460 TGGATATTGAGTTGGCCGGC 60.465 55.000 21.18 21.18 0.00 6.13
640 725 1.507141 GGATATTGAGTTGGCCGGCG 61.507 60.000 22.54 0.00 0.00 6.46
641 726 2.117941 GATATTGAGTTGGCCGGCGC 62.118 60.000 22.54 14.37 0.00 6.53
689 774 0.958091 TTTTTGTGCTCATGGTCGGG 59.042 50.000 0.00 0.00 0.00 5.14
690 775 0.893270 TTTTGTGCTCATGGTCGGGG 60.893 55.000 0.00 0.00 0.00 5.73
691 776 2.762969 TTTGTGCTCATGGTCGGGGG 62.763 60.000 0.00 0.00 0.00 5.40
692 777 3.717294 GTGCTCATGGTCGGGGGT 61.717 66.667 0.00 0.00 0.00 4.95
693 778 2.933287 TGCTCATGGTCGGGGGTT 60.933 61.111 0.00 0.00 0.00 4.11
694 779 2.355115 GCTCATGGTCGGGGGTTT 59.645 61.111 0.00 0.00 0.00 3.27
695 780 1.749258 GCTCATGGTCGGGGGTTTC 60.749 63.158 0.00 0.00 0.00 2.78
696 781 1.449601 CTCATGGTCGGGGGTTTCG 60.450 63.158 0.00 0.00 0.00 3.46
697 782 3.131478 CATGGTCGGGGGTTTCGC 61.131 66.667 0.00 0.00 0.00 4.70
698 783 3.327404 ATGGTCGGGGGTTTCGCT 61.327 61.111 0.00 0.00 0.00 4.93
699 784 1.991167 ATGGTCGGGGGTTTCGCTA 60.991 57.895 0.00 0.00 0.00 4.26
700 785 1.968050 ATGGTCGGGGGTTTCGCTAG 61.968 60.000 0.00 0.00 0.00 3.42
701 786 2.353610 GGTCGGGGGTTTCGCTAGA 61.354 63.158 0.00 0.00 0.00 2.43
702 787 1.153686 GTCGGGGGTTTCGCTAGAC 60.154 63.158 0.00 0.00 0.00 2.59
703 788 1.304713 TCGGGGGTTTCGCTAGACT 60.305 57.895 0.00 0.00 0.00 3.24
704 789 1.153628 CGGGGGTTTCGCTAGACTG 60.154 63.158 0.00 0.00 0.00 3.51
705 790 1.885163 CGGGGGTTTCGCTAGACTGT 61.885 60.000 0.00 0.00 0.00 3.55
706 791 0.108281 GGGGGTTTCGCTAGACTGTC 60.108 60.000 0.00 0.00 0.00 3.51
707 792 0.108281 GGGGTTTCGCTAGACTGTCC 60.108 60.000 3.76 0.00 0.00 4.02
708 793 0.108281 GGGTTTCGCTAGACTGTCCC 60.108 60.000 3.76 0.00 0.00 4.46
709 794 0.896226 GGTTTCGCTAGACTGTCCCT 59.104 55.000 3.76 0.00 0.00 4.20
710 795 1.275573 GGTTTCGCTAGACTGTCCCTT 59.724 52.381 3.76 0.00 0.00 3.95
711 796 2.494870 GGTTTCGCTAGACTGTCCCTTA 59.505 50.000 3.76 0.00 0.00 2.69
712 797 3.056322 GGTTTCGCTAGACTGTCCCTTAA 60.056 47.826 3.76 0.00 0.00 1.85
713 798 4.382793 GGTTTCGCTAGACTGTCCCTTAAT 60.383 45.833 3.76 0.00 0.00 1.40
714 799 4.650754 TTCGCTAGACTGTCCCTTAATC 57.349 45.455 3.76 0.00 0.00 1.75
715 800 3.628008 TCGCTAGACTGTCCCTTAATCA 58.372 45.455 3.76 0.00 0.00 2.57
716 801 4.021229 TCGCTAGACTGTCCCTTAATCAA 58.979 43.478 3.76 0.00 0.00 2.57
717 802 4.649674 TCGCTAGACTGTCCCTTAATCAAT 59.350 41.667 3.76 0.00 0.00 2.57
718 803 4.985409 CGCTAGACTGTCCCTTAATCAATC 59.015 45.833 3.76 0.00 0.00 2.67
719 804 5.451937 CGCTAGACTGTCCCTTAATCAATCA 60.452 44.000 3.76 0.00 0.00 2.57
720 805 6.349300 GCTAGACTGTCCCTTAATCAATCAA 58.651 40.000 3.76 0.00 0.00 2.57
721 806 6.481644 GCTAGACTGTCCCTTAATCAATCAAG 59.518 42.308 3.76 0.00 0.00 3.02
722 807 5.189180 AGACTGTCCCTTAATCAATCAAGC 58.811 41.667 3.76 0.00 0.00 4.01
723 808 4.922206 ACTGTCCCTTAATCAATCAAGCA 58.078 39.130 0.00 0.00 0.00 3.91
724 809 5.513233 ACTGTCCCTTAATCAATCAAGCAT 58.487 37.500 0.00 0.00 0.00 3.79
725 810 5.591877 ACTGTCCCTTAATCAATCAAGCATC 59.408 40.000 0.00 0.00 0.00 3.91
726 811 5.759059 TGTCCCTTAATCAATCAAGCATCT 58.241 37.500 0.00 0.00 0.00 2.90
727 812 6.189859 TGTCCCTTAATCAATCAAGCATCTT 58.810 36.000 0.00 0.00 0.00 2.40
728 813 6.664816 TGTCCCTTAATCAATCAAGCATCTTT 59.335 34.615 0.00 0.00 0.00 2.52
729 814 6.976925 GTCCCTTAATCAATCAAGCATCTTTG 59.023 38.462 0.00 0.00 0.00 2.77
730 815 6.664816 TCCCTTAATCAATCAAGCATCTTTGT 59.335 34.615 0.00 0.00 0.00 2.83
731 816 7.178983 TCCCTTAATCAATCAAGCATCTTTGTT 59.821 33.333 0.00 0.00 0.00 2.83
732 817 7.277098 CCCTTAATCAATCAAGCATCTTTGTTG 59.723 37.037 0.00 0.00 0.00 3.33
733 818 7.816031 CCTTAATCAATCAAGCATCTTTGTTGT 59.184 33.333 0.00 0.00 0.00 3.32
734 819 9.199982 CTTAATCAATCAAGCATCTTTGTTGTT 57.800 29.630 0.00 0.00 0.00 2.83
735 820 9.545105 TTAATCAATCAAGCATCTTTGTTGTTT 57.455 25.926 0.00 0.00 0.00 2.83
736 821 8.441312 AATCAATCAAGCATCTTTGTTGTTTT 57.559 26.923 0.00 0.00 0.00 2.43
737 822 7.467557 TCAATCAAGCATCTTTGTTGTTTTC 57.532 32.000 0.00 0.00 0.00 2.29
738 823 6.198778 TCAATCAAGCATCTTTGTTGTTTTCG 59.801 34.615 0.00 0.00 0.00 3.46
739 824 4.358851 TCAAGCATCTTTGTTGTTTTCGG 58.641 39.130 0.00 0.00 0.00 4.30
740 825 2.742774 AGCATCTTTGTTGTTTTCGGC 58.257 42.857 0.00 0.00 0.00 5.54
741 826 1.792367 GCATCTTTGTTGTTTTCGGCC 59.208 47.619 0.00 0.00 0.00 6.13
742 827 2.545742 GCATCTTTGTTGTTTTCGGCCT 60.546 45.455 0.00 0.00 0.00 5.19
743 828 2.861462 TCTTTGTTGTTTTCGGCCTG 57.139 45.000 0.00 0.00 0.00 4.85
744 829 1.202359 TCTTTGTTGTTTTCGGCCTGC 60.202 47.619 0.00 0.00 0.00 4.85
745 830 0.820871 TTTGTTGTTTTCGGCCTGCT 59.179 45.000 0.00 0.00 0.00 4.24
746 831 0.383949 TTGTTGTTTTCGGCCTGCTC 59.616 50.000 0.00 0.00 0.00 4.26
747 832 0.465460 TGTTGTTTTCGGCCTGCTCT 60.465 50.000 0.00 0.00 0.00 4.09
748 833 0.668535 GTTGTTTTCGGCCTGCTCTT 59.331 50.000 0.00 0.00 0.00 2.85
749 834 0.951558 TTGTTTTCGGCCTGCTCTTC 59.048 50.000 0.00 0.00 0.00 2.87
750 835 0.889186 TGTTTTCGGCCTGCTCTTCC 60.889 55.000 0.00 0.00 0.00 3.46
751 836 0.606673 GTTTTCGGCCTGCTCTTCCT 60.607 55.000 0.00 0.00 0.00 3.36
752 837 0.110486 TTTTCGGCCTGCTCTTCCTT 59.890 50.000 0.00 0.00 0.00 3.36
753 838 0.981183 TTTCGGCCTGCTCTTCCTTA 59.019 50.000 0.00 0.00 0.00 2.69
754 839 1.204146 TTCGGCCTGCTCTTCCTTAT 58.796 50.000 0.00 0.00 0.00 1.73
755 840 2.082140 TCGGCCTGCTCTTCCTTATA 57.918 50.000 0.00 0.00 0.00 0.98
756 841 2.394632 TCGGCCTGCTCTTCCTTATAA 58.605 47.619 0.00 0.00 0.00 0.98
757 842 2.769663 TCGGCCTGCTCTTCCTTATAAA 59.230 45.455 0.00 0.00 0.00 1.40
758 843 2.872858 CGGCCTGCTCTTCCTTATAAAC 59.127 50.000 0.00 0.00 0.00 2.01
759 844 3.215151 GGCCTGCTCTTCCTTATAAACC 58.785 50.000 0.00 0.00 0.00 3.27
760 845 2.872858 GCCTGCTCTTCCTTATAAACCG 59.127 50.000 0.00 0.00 0.00 4.44
761 846 3.467803 CCTGCTCTTCCTTATAAACCGG 58.532 50.000 0.00 0.00 0.00 5.28
762 847 3.467803 CTGCTCTTCCTTATAAACCGGG 58.532 50.000 6.32 0.00 0.00 5.73
763 848 2.219458 GCTCTTCCTTATAAACCGGGC 58.781 52.381 6.32 0.00 0.00 6.13
764 849 2.847441 CTCTTCCTTATAAACCGGGCC 58.153 52.381 6.32 0.00 0.00 5.80
765 850 2.171870 CTCTTCCTTATAAACCGGGCCA 59.828 50.000 6.32 0.00 0.00 5.36
766 851 2.577105 TCTTCCTTATAAACCGGGCCAA 59.423 45.455 6.32 0.00 0.00 4.52
767 852 3.203487 TCTTCCTTATAAACCGGGCCAAT 59.797 43.478 6.32 0.00 0.00 3.16
768 853 3.673543 TCCTTATAAACCGGGCCAATT 57.326 42.857 6.32 0.00 0.00 2.32
769 854 3.558033 TCCTTATAAACCGGGCCAATTC 58.442 45.455 6.32 0.00 0.00 2.17
770 855 3.203487 TCCTTATAAACCGGGCCAATTCT 59.797 43.478 6.32 0.00 0.00 2.40
771 856 4.412858 TCCTTATAAACCGGGCCAATTCTA 59.587 41.667 6.32 0.00 0.00 2.10
772 857 5.073965 TCCTTATAAACCGGGCCAATTCTAT 59.926 40.000 6.32 0.00 0.00 1.98
773 858 5.773176 CCTTATAAACCGGGCCAATTCTATT 59.227 40.000 6.32 0.00 0.00 1.73
774 859 6.072119 CCTTATAAACCGGGCCAATTCTATTC 60.072 42.308 6.32 0.00 0.00 1.75
775 860 3.382083 AAACCGGGCCAATTCTATTCT 57.618 42.857 6.32 0.00 0.00 2.40
776 861 3.382083 AACCGGGCCAATTCTATTCTT 57.618 42.857 6.32 0.00 0.00 2.52
777 862 3.382083 ACCGGGCCAATTCTATTCTTT 57.618 42.857 6.32 0.00 0.00 2.52
778 863 3.708451 ACCGGGCCAATTCTATTCTTTT 58.292 40.909 6.32 0.00 0.00 2.27
779 864 4.093743 ACCGGGCCAATTCTATTCTTTTT 58.906 39.130 6.32 0.00 0.00 1.94
801 886 6.844097 TTTATGAAAATTGTAGGACCACCC 57.156 37.500 0.00 0.00 36.73 4.61
802 887 7.511028 TTTTTATGAAAATTGTAGGACCACCCT 59.489 33.333 0.00 0.00 38.14 4.34
812 897 2.759985 GACCACCCTGTCCTCTTGA 58.240 57.895 0.00 0.00 0.00 3.02
813 898 0.321996 GACCACCCTGTCCTCTTGAC 59.678 60.000 0.00 0.00 44.72 3.18
859 944 8.798402 AGATAGTGTACACCTAGATTATCAAGC 58.202 37.037 22.28 1.66 0.00 4.01
862 947 6.154534 AGTGTACACCTAGATTATCAAGCACA 59.845 38.462 22.28 0.00 0.00 4.57
863 948 6.986817 GTGTACACCTAGATTATCAAGCACAT 59.013 38.462 15.42 0.00 0.00 3.21
864 949 7.495934 GTGTACACCTAGATTATCAAGCACATT 59.504 37.037 15.42 0.00 0.00 2.71
866 951 8.979574 GTACACCTAGATTATCAAGCACATTAC 58.020 37.037 0.00 0.00 0.00 1.89
868 953 7.712639 ACACCTAGATTATCAAGCACATTACTG 59.287 37.037 0.00 0.00 0.00 2.74
869 954 7.928167 CACCTAGATTATCAAGCACATTACTGA 59.072 37.037 0.00 0.00 0.00 3.41
870 955 8.147058 ACCTAGATTATCAAGCACATTACTGAG 58.853 37.037 0.00 0.00 0.00 3.35
872 957 9.755804 CTAGATTATCAAGCACATTACTGAGAA 57.244 33.333 0.00 0.00 0.00 2.87
874 959 9.453572 AGATTATCAAGCACATTACTGAGAAAA 57.546 29.630 0.00 0.00 0.00 2.29
879 964 9.846248 ATCAAGCACATTACTGAGAAAAATTAC 57.154 29.630 0.00 0.00 0.00 1.89
890 999 8.006298 ACTGAGAAAAATTACACACCATTGAA 57.994 30.769 0.00 0.00 0.00 2.69
988 1101 0.110486 GGGGCTGACAAAACAGGAGA 59.890 55.000 0.00 0.00 38.22 3.71
989 1102 1.239347 GGGCTGACAAAACAGGAGAC 58.761 55.000 0.00 0.00 38.22 3.36
991 1104 0.235926 GCTGACAAAACAGGAGACGC 59.764 55.000 0.00 0.00 38.22 5.19
1212 1341 6.222038 AGGAACTCTAATCGCTTTGATACA 57.778 37.500 0.00 0.00 35.84 2.29
1340 1469 6.992715 AGAATTAGGGTAATGATCAAGGAACG 59.007 38.462 0.00 0.00 0.00 3.95
1623 1752 0.740149 TTGGCATGCCATTGTCGATC 59.260 50.000 38.78 8.31 46.64 3.69
1653 1782 1.140852 GCTGGGGCACTGTGTGATATA 59.859 52.381 9.86 0.00 35.23 0.86
1702 1834 4.826274 AGTGAAGCTTATGTGGCTCTAA 57.174 40.909 0.00 0.00 39.30 2.10
1751 1883 6.640907 ACAATGATTCGCCTTGTAAAGTTTTC 59.359 34.615 0.00 0.00 44.25 2.29
1827 1959 2.315925 TCCCTGACGATGAAGCAATC 57.684 50.000 0.00 0.00 0.00 2.67
1828 1960 1.554617 TCCCTGACGATGAAGCAATCA 59.445 47.619 0.00 0.00 43.67 2.57
1911 2049 4.101585 TCTCATGAGGCTAACTGTTATGGG 59.898 45.833 22.42 0.00 0.00 4.00
2097 2235 2.568623 ATCTTCTTGCCAAGTTCGGT 57.431 45.000 4.04 0.00 0.00 4.69
2166 2304 4.083590 GCAAGTCCAAGTCATGAGTTCTTC 60.084 45.833 13.00 6.44 0.00 2.87
2181 2319 4.455606 AGTTCTTCTCAACTTCAACCCTG 58.544 43.478 0.00 0.00 32.34 4.45
2259 2397 3.969976 TGGGAATGCTTAGAGTGCTAGAT 59.030 43.478 0.00 0.00 0.00 1.98
2333 2471 3.127533 CCGGTTGCTGCTACTGGC 61.128 66.667 25.06 4.35 35.39 4.85
2517 2655 3.790437 CCATCCCTGGCTGCGTCT 61.790 66.667 0.00 0.00 35.23 4.18
2639 2780 5.773176 GGTTCCCTTATGGAGTTTCAAAGAA 59.227 40.000 0.00 0.00 46.24 2.52
2723 2864 3.935818 TTGGTTACCTTGTGGACTGAA 57.064 42.857 2.07 0.00 37.04 3.02
2827 2975 2.854805 GCCAAGTTCGTTCAGTCTTTGC 60.855 50.000 0.00 0.00 0.00 3.68
2914 3062 5.984725 AGTACGATCAAACCATGGACAATA 58.015 37.500 21.47 0.00 0.00 1.90
2931 3079 5.163301 GGACAATAGCTTTGGAGTATGGAGA 60.163 44.000 0.00 0.00 0.00 3.71
2947 3095 2.226437 TGGAGAACAAAATTCTCTGCGC 59.774 45.455 14.53 0.00 43.28 6.09
2954 3105 0.320771 AAATTCTCTGCGCTGGACGT 60.321 50.000 14.70 0.00 46.11 4.34
3000 3151 1.271856 TGGAGATAAACTGTGCCGGA 58.728 50.000 5.05 0.00 0.00 5.14
3001 3152 1.207089 TGGAGATAAACTGTGCCGGAG 59.793 52.381 5.05 0.00 0.00 4.63
3004 3155 2.673368 GAGATAAACTGTGCCGGAGTTG 59.327 50.000 5.05 0.00 33.85 3.16
3022 3173 4.530875 AGTTGCTAATGATCTTGAAGGGG 58.469 43.478 0.00 0.00 0.00 4.79
3031 3182 3.397618 TGATCTTGAAGGGGTTCTTGGAA 59.602 43.478 0.00 0.00 35.50 3.53
3048 3199 3.381045 TGGAAACGCTGAGCTAATATCG 58.619 45.455 1.78 0.00 0.00 2.92
3051 3202 4.318121 GGAAACGCTGAGCTAATATCGTTG 60.318 45.833 1.78 0.00 39.60 4.10
3056 3207 5.350365 ACGCTGAGCTAATATCGTTGAAAAA 59.650 36.000 1.78 0.00 0.00 1.94
3094 3245 5.412617 TCTGGTATGGACCCTGAATACTA 57.587 43.478 0.00 0.00 46.32 1.82
3098 3249 5.601313 TGGTATGGACCCTGAATACTAGAAC 59.399 44.000 0.00 0.00 46.32 3.01
3103 3254 4.710375 GGACCCTGAATACTAGAACACTGA 59.290 45.833 0.00 0.00 0.00 3.41
3104 3255 5.394333 GGACCCTGAATACTAGAACACTGAC 60.394 48.000 0.00 0.00 0.00 3.51
3105 3256 5.084519 ACCCTGAATACTAGAACACTGACA 58.915 41.667 0.00 0.00 0.00 3.58
3132 3283 2.367567 AGCACGAGAACTTTGGGTAGAA 59.632 45.455 0.00 0.00 0.00 2.10
3153 3304 2.103263 AGACTGTCACCAACTGGAGAAC 59.897 50.000 10.88 0.00 36.57 3.01
3156 3307 1.416401 TGTCACCAACTGGAGAACCTC 59.584 52.381 1.86 0.00 36.57 3.85
3175 3335 1.355066 CTTCTCACCGGAAGAAGCGC 61.355 60.000 26.79 0.00 43.70 5.92
3181 3341 1.519455 CCGGAAGAAGCGCCTACAG 60.519 63.158 2.29 0.00 0.00 2.74
3239 3399 3.722147 ACAATCTAGCATACTTCTGCCG 58.278 45.455 0.00 0.00 43.33 5.69
3242 3402 2.656002 TCTAGCATACTTCTGCCGAGT 58.344 47.619 0.00 0.00 43.33 4.18
3243 3403 2.359214 TCTAGCATACTTCTGCCGAGTG 59.641 50.000 0.00 0.00 43.33 3.51
3244 3404 1.186200 AGCATACTTCTGCCGAGTGA 58.814 50.000 0.00 0.00 43.33 3.41
3245 3405 1.134965 AGCATACTTCTGCCGAGTGAC 60.135 52.381 0.00 0.00 43.33 3.67
3261 3421 1.804748 GTGACGGTGGAAGATTTGACC 59.195 52.381 0.00 0.00 0.00 4.02
3394 3557 2.298729 GACAGCTTGGAGAGAGTGTTCT 59.701 50.000 0.00 0.00 36.01 3.01
3405 3568 3.757493 AGAGAGTGTTCTACGAATCGGTT 59.243 43.478 7.80 0.00 32.53 4.44
3441 3610 1.255667 TTCCGGGGCTACAGTCACTC 61.256 60.000 0.00 0.00 0.00 3.51
3531 3700 0.555769 TGAAGGGCTGTGGGAAACTT 59.444 50.000 0.00 0.00 0.00 2.66
3620 3792 2.629051 GTGGAACGATTTAGTCTGGGG 58.371 52.381 0.00 0.00 0.00 4.96
3646 3818 2.698855 AAGTGTCAAGCGCTGGATAT 57.301 45.000 19.46 4.04 38.09 1.63
3699 3871 5.535333 CATTTTGCAACTGAAGGATGAACT 58.465 37.500 0.00 0.00 0.00 3.01
3734 3910 3.049674 CGTGTTGGCGGTGATGCT 61.050 61.111 0.00 0.00 34.52 3.79
3783 3959 0.176910 TGTTGGCTGTTGTCTGTCGA 59.823 50.000 0.00 0.00 0.00 4.20
3789 3965 2.288273 GGCTGTTGTCTGTCGAGTAAGT 60.288 50.000 0.00 0.00 0.00 2.24
3812 3988 1.344953 TGACAGGAGGTGCAGTGGTT 61.345 55.000 0.00 0.00 0.00 3.67
3813 3989 0.886490 GACAGGAGGTGCAGTGGTTG 60.886 60.000 0.00 0.00 0.00 3.77
3814 3990 1.149174 CAGGAGGTGCAGTGGTTGT 59.851 57.895 0.00 0.00 0.00 3.32
3815 3991 0.886490 CAGGAGGTGCAGTGGTTGTC 60.886 60.000 0.00 0.00 0.00 3.18
3816 3992 1.056700 AGGAGGTGCAGTGGTTGTCT 61.057 55.000 0.00 0.00 0.00 3.41
3818 3994 1.071699 GGAGGTGCAGTGGTTGTCTAA 59.928 52.381 0.00 0.00 0.00 2.10
3819 3995 2.417719 GAGGTGCAGTGGTTGTCTAAG 58.582 52.381 0.00 0.00 0.00 2.18
3820 3996 0.875059 GGTGCAGTGGTTGTCTAAGC 59.125 55.000 0.00 0.00 34.93 3.09
3821 3997 1.543429 GGTGCAGTGGTTGTCTAAGCT 60.543 52.381 0.00 0.00 35.38 3.74
3864 4040 3.058224 TCTCGATATCGCGACATGACATT 60.058 43.478 20.34 0.00 39.60 2.71
3869 4045 2.362169 TCGCGACATGACATTGAAGA 57.638 45.000 3.71 0.00 0.00 2.87
3920 4096 1.135489 TCCTCGACGTGCAATGTACTC 60.135 52.381 0.00 0.00 35.18 2.59
3921 4097 1.402325 CCTCGACGTGCAATGTACTCA 60.402 52.381 0.00 0.00 35.18 3.41
3924 4100 2.030628 TCGACGTGCAATGTACTCAAGA 60.031 45.455 0.00 0.00 35.18 3.02
3942 4118 3.151542 AGATCATCCCCAGGGTACTTT 57.848 47.619 4.22 0.00 36.47 2.66
4042 4219 8.375493 ACTCTGGTTATCCATAGAGTACAAAA 57.625 34.615 11.27 0.00 43.11 2.44
4098 4275 8.512138 ACATAAGTAATTTGTAACACTTCCTGC 58.488 33.333 0.00 0.00 33.47 4.85
4201 4378 4.081406 TGTATTTTGGCAAGAGCATCAGT 58.919 39.130 0.00 0.00 44.61 3.41
4202 4379 3.587797 ATTTTGGCAAGAGCATCAGTG 57.412 42.857 0.00 0.00 44.61 3.66
4203 4380 1.250328 TTTGGCAAGAGCATCAGTGG 58.750 50.000 0.00 0.00 44.61 4.00
4204 4381 0.111061 TTGGCAAGAGCATCAGTGGT 59.889 50.000 0.00 0.00 44.61 4.16
4208 4385 2.819608 GGCAAGAGCATCAGTGGTAAAA 59.180 45.455 0.00 0.00 44.61 1.52
4252 4467 8.631275 ATTGGGGGTTGTAAAATTTATATGGT 57.369 30.769 0.00 0.00 0.00 3.55
4327 4544 7.403312 TTTGTTCCTTTGAGAACTTCAATGA 57.597 32.000 6.04 0.00 44.90 2.57
4351 4569 5.876357 ACTTCTCTCTACTCACTGTCTTCT 58.124 41.667 0.00 0.00 0.00 2.85
4379 4598 8.188139 TCCTCCGAAATTTATGAATTACTTTGC 58.812 33.333 0.00 0.00 34.44 3.68
4382 4601 8.519526 TCCGAAATTTATGAATTACTTTGCTGT 58.480 29.630 0.00 0.00 34.44 4.40
4386 4605 9.439500 AAATTTATGAATTACTTTGCTGTGCAT 57.561 25.926 0.00 0.00 34.81 3.96
4394 4613 2.629137 ACTTTGCTGTGCATCATCCAAA 59.371 40.909 0.00 3.04 38.76 3.28
4406 4625 5.045872 GCATCATCCAAAGGAATTACTTGC 58.954 41.667 2.96 0.00 34.34 4.01
4428 4647 4.507756 GCGAAATTTATTGGAGGATTTGGC 59.492 41.667 0.00 0.00 36.54 4.52
4446 4666 1.588082 CCAGCCCATGCAACTCAAC 59.412 57.895 0.00 0.00 41.13 3.18
4448 4668 0.892755 CAGCCCATGCAACTCAACAT 59.107 50.000 0.00 0.00 41.13 2.71
4449 4669 2.093890 CAGCCCATGCAACTCAACATA 58.906 47.619 0.00 0.00 41.13 2.29
4509 4731 2.472695 AAGCTCCGAATTGTAGTGCA 57.527 45.000 0.00 0.00 0.00 4.57
4555 4778 0.992695 AGGGGGAGCAAAAGGAGTAC 59.007 55.000 0.00 0.00 0.00 2.73
4556 4779 0.992695 GGGGGAGCAAAAGGAGTACT 59.007 55.000 0.00 0.00 0.00 2.73
4557 4780 1.065345 GGGGGAGCAAAAGGAGTACTC 60.065 57.143 14.87 14.87 0.00 2.59
4566 4789 4.256462 GGAGTACTCCCTCCGTCC 57.744 66.667 28.87 4.17 43.94 4.79
4567 4790 1.455402 GGAGTACTCCCTCCGTCCC 60.455 68.421 28.87 3.11 43.94 4.46
4568 4791 1.823041 GAGTACTCCCTCCGTCCCG 60.823 68.421 12.13 0.00 0.00 5.14
4569 4792 2.262774 GAGTACTCCCTCCGTCCCGA 62.263 65.000 12.13 0.00 0.00 5.14
4570 4793 1.379044 GTACTCCCTCCGTCCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
4571 4794 0.967380 GTACTCCCTCCGTCCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
4572 4795 0.251742 TACTCCCTCCGTCCCGAAAA 60.252 55.000 0.00 0.00 0.00 2.29
4573 4796 1.123246 ACTCCCTCCGTCCCGAAAAA 61.123 55.000 0.00 0.00 0.00 1.94
4574 4797 0.672711 CTCCCTCCGTCCCGAAAAAC 60.673 60.000 0.00 0.00 0.00 2.43
4575 4798 1.071814 CCCTCCGTCCCGAAAAACA 59.928 57.895 0.00 0.00 0.00 2.83
4576 4799 0.322187 CCCTCCGTCCCGAAAAACAT 60.322 55.000 0.00 0.00 0.00 2.71
4577 4800 0.802494 CCTCCGTCCCGAAAAACATG 59.198 55.000 0.00 0.00 0.00 3.21
4578 4801 1.519408 CTCCGTCCCGAAAAACATGT 58.481 50.000 0.00 0.00 0.00 3.21
4579 4802 1.463444 CTCCGTCCCGAAAAACATGTC 59.537 52.381 0.00 0.00 0.00 3.06
4580 4803 0.165079 CCGTCCCGAAAAACATGTCG 59.835 55.000 0.00 0.00 37.01 4.35
4581 4804 0.452122 CGTCCCGAAAAACATGTCGC 60.452 55.000 0.00 0.00 35.93 5.19
4582 4805 0.589223 GTCCCGAAAAACATGTCGCA 59.411 50.000 0.00 0.00 35.93 5.10
4583 4806 0.871722 TCCCGAAAAACATGTCGCAG 59.128 50.000 0.00 0.00 35.93 5.18
4584 4807 0.591170 CCCGAAAAACATGTCGCAGT 59.409 50.000 0.00 0.00 35.93 4.40
4585 4808 1.662876 CCCGAAAAACATGTCGCAGTG 60.663 52.381 0.00 0.00 35.93 3.66
4586 4809 1.262950 CCGAAAAACATGTCGCAGTGA 59.737 47.619 0.00 0.00 35.93 3.41
4601 4824 3.849123 GCAGTGACATTTTTGCGAAAAC 58.151 40.909 14.09 2.19 37.56 2.43
4602 4825 3.302415 GCAGTGACATTTTTGCGAAAACC 60.302 43.478 14.09 7.39 37.56 3.27
4603 4826 3.245048 CAGTGACATTTTTGCGAAAACCC 59.755 43.478 14.09 7.07 37.56 4.11
4604 4827 3.132111 AGTGACATTTTTGCGAAAACCCT 59.868 39.130 14.09 3.60 37.56 4.34
4605 4828 3.489416 GTGACATTTTTGCGAAAACCCTC 59.511 43.478 14.09 9.19 37.56 4.30
4606 4829 3.383185 TGACATTTTTGCGAAAACCCTCT 59.617 39.130 14.09 0.00 37.56 3.69
4607 4830 3.977427 ACATTTTTGCGAAAACCCTCTC 58.023 40.909 14.09 0.00 37.56 3.20
4608 4831 3.636764 ACATTTTTGCGAAAACCCTCTCT 59.363 39.130 14.09 0.00 37.56 3.10
4609 4832 3.708563 TTTTTGCGAAAACCCTCTCTG 57.291 42.857 7.81 0.00 30.07 3.35
4610 4833 0.951558 TTTGCGAAAACCCTCTCTGC 59.048 50.000 0.00 0.00 0.00 4.26
4611 4834 1.227999 TTGCGAAAACCCTCTCTGCG 61.228 55.000 0.00 0.00 0.00 5.18
4612 4835 1.374252 GCGAAAACCCTCTCTGCGA 60.374 57.895 0.00 0.00 0.00 5.10
4613 4836 0.949105 GCGAAAACCCTCTCTGCGAA 60.949 55.000 0.00 0.00 0.00 4.70
4614 4837 1.726853 CGAAAACCCTCTCTGCGAAT 58.273 50.000 0.00 0.00 0.00 3.34
4615 4838 2.076863 CGAAAACCCTCTCTGCGAATT 58.923 47.619 0.00 0.00 0.00 2.17
4616 4839 2.094417 CGAAAACCCTCTCTGCGAATTC 59.906 50.000 0.00 0.00 0.00 2.17
4617 4840 2.115343 AAACCCTCTCTGCGAATTCC 57.885 50.000 0.00 0.00 0.00 3.01
4618 4841 0.253327 AACCCTCTCTGCGAATTCCC 59.747 55.000 0.00 0.00 0.00 3.97
4619 4842 1.227380 CCCTCTCTGCGAATTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
4620 4843 1.676678 CCCTCTCTGCGAATTCCCGA 61.677 60.000 0.00 0.00 0.00 5.14
4621 4844 0.528684 CCTCTCTGCGAATTCCCGAC 60.529 60.000 0.00 0.00 0.00 4.79
4622 4845 0.173481 CTCTCTGCGAATTCCCGACA 59.827 55.000 0.00 0.00 0.00 4.35
4623 4846 0.108804 TCTCTGCGAATTCCCGACAC 60.109 55.000 0.00 0.00 0.00 3.67
4624 4847 0.389817 CTCTGCGAATTCCCGACACA 60.390 55.000 0.00 0.00 0.00 3.72
4625 4848 0.034198 TCTGCGAATTCCCGACACAA 59.966 50.000 0.00 0.00 0.00 3.33
4626 4849 0.165944 CTGCGAATTCCCGACACAAC 59.834 55.000 0.00 0.00 0.00 3.32
4627 4850 1.231958 TGCGAATTCCCGACACAACC 61.232 55.000 0.00 0.00 0.00 3.77
4628 4851 1.918868 GCGAATTCCCGACACAACCC 61.919 60.000 0.00 0.00 0.00 4.11
4629 4852 1.632046 CGAATTCCCGACACAACCCG 61.632 60.000 0.00 0.00 0.00 5.28
4630 4853 1.918868 GAATTCCCGACACAACCCGC 61.919 60.000 0.00 0.00 0.00 6.13
4631 4854 2.684192 AATTCCCGACACAACCCGCA 62.684 55.000 0.00 0.00 0.00 5.69
4632 4855 3.818121 TTCCCGACACAACCCGCAG 62.818 63.158 0.00 0.00 0.00 5.18
4633 4856 4.619227 CCCGACACAACCCGCAGT 62.619 66.667 0.00 0.00 0.00 4.40
4634 4857 3.041940 CCGACACAACCCGCAGTC 61.042 66.667 0.00 0.00 0.00 3.51
4635 4858 3.041940 CGACACAACCCGCAGTCC 61.042 66.667 0.00 0.00 0.00 3.85
4636 4859 2.668550 GACACAACCCGCAGTCCC 60.669 66.667 0.00 0.00 0.00 4.46
4637 4860 3.168528 ACACAACCCGCAGTCCCT 61.169 61.111 0.00 0.00 0.00 4.20
4638 4861 2.669569 CACAACCCGCAGTCCCTG 60.670 66.667 0.00 0.00 34.12 4.45
4639 4862 3.953775 ACAACCCGCAGTCCCTGG 61.954 66.667 0.00 0.00 31.21 4.45
4640 4863 3.953775 CAACCCGCAGTCCCTGGT 61.954 66.667 0.00 0.00 31.21 4.00
4641 4864 3.637273 AACCCGCAGTCCCTGGTC 61.637 66.667 0.00 0.00 31.21 4.02
4644 4867 4.436998 CCGCAGTCCCTGGTCGTC 62.437 72.222 0.00 0.00 31.21 4.20
4645 4868 3.374402 CGCAGTCCCTGGTCGTCT 61.374 66.667 0.00 0.00 31.21 4.18
4646 4869 2.574399 GCAGTCCCTGGTCGTCTC 59.426 66.667 0.00 0.00 31.21 3.36
4647 4870 3.007973 GCAGTCCCTGGTCGTCTCC 62.008 68.421 0.00 0.00 31.21 3.71
4648 4871 2.037527 AGTCCCTGGTCGTCTCCC 59.962 66.667 0.00 0.00 0.00 4.30
4649 4872 2.037527 GTCCCTGGTCGTCTCCCT 59.962 66.667 0.00 0.00 0.00 4.20
4650 4873 2.053277 GTCCCTGGTCGTCTCCCTC 61.053 68.421 0.00 0.00 0.00 4.30
4651 4874 3.141488 CCCTGGTCGTCTCCCTCG 61.141 72.222 0.00 0.00 0.00 4.63
4652 4875 3.827898 CCTGGTCGTCTCCCTCGC 61.828 72.222 0.00 0.00 0.00 5.03
4653 4876 3.062466 CTGGTCGTCTCCCTCGCA 61.062 66.667 0.00 0.00 0.00 5.10
4654 4877 3.057547 CTGGTCGTCTCCCTCGCAG 62.058 68.421 0.00 0.00 0.00 5.18
4655 4878 4.500116 GGTCGTCTCCCTCGCAGC 62.500 72.222 0.00 0.00 0.00 5.25
4656 4879 4.500116 GTCGTCTCCCTCGCAGCC 62.500 72.222 0.00 0.00 0.00 4.85
4657 4880 4.742649 TCGTCTCCCTCGCAGCCT 62.743 66.667 0.00 0.00 0.00 4.58
4658 4881 4.200283 CGTCTCCCTCGCAGCCTC 62.200 72.222 0.00 0.00 0.00 4.70
4659 4882 3.071206 GTCTCCCTCGCAGCCTCA 61.071 66.667 0.00 0.00 0.00 3.86
4660 4883 3.071206 TCTCCCTCGCAGCCTCAC 61.071 66.667 0.00 0.00 0.00 3.51
4661 4884 3.073735 CTCCCTCGCAGCCTCACT 61.074 66.667 0.00 0.00 0.00 3.41
4662 4885 3.071206 TCCCTCGCAGCCTCACTC 61.071 66.667 0.00 0.00 0.00 3.51
4663 4886 4.504916 CCCTCGCAGCCTCACTCG 62.505 72.222 0.00 0.00 0.00 4.18
4664 4887 3.753434 CCTCGCAGCCTCACTCGT 61.753 66.667 0.00 0.00 0.00 4.18
4665 4888 2.202544 CTCGCAGCCTCACTCGTC 60.203 66.667 0.00 0.00 0.00 4.20
4666 4889 2.673341 TCGCAGCCTCACTCGTCT 60.673 61.111 0.00 0.00 0.00 4.18
4667 4890 2.202544 CGCAGCCTCACTCGTCTC 60.203 66.667 0.00 0.00 0.00 3.36
4668 4891 2.183046 GCAGCCTCACTCGTCTCC 59.817 66.667 0.00 0.00 0.00 3.71
4669 4892 2.888863 CAGCCTCACTCGTCTCCC 59.111 66.667 0.00 0.00 0.00 4.30
4670 4893 2.363147 AGCCTCACTCGTCTCCCC 60.363 66.667 0.00 0.00 0.00 4.81
4671 4894 2.363147 GCCTCACTCGTCTCCCCT 60.363 66.667 0.00 0.00 0.00 4.79
4672 4895 2.716017 GCCTCACTCGTCTCCCCTG 61.716 68.421 0.00 0.00 0.00 4.45
4673 4896 2.716017 CCTCACTCGTCTCCCCTGC 61.716 68.421 0.00 0.00 0.00 4.85
4674 4897 3.057547 CTCACTCGTCTCCCCTGCG 62.058 68.421 0.00 0.00 0.00 5.18
4675 4898 4.803426 CACTCGTCTCCCCTGCGC 62.803 72.222 0.00 0.00 0.00 6.09
4692 4915 4.824515 CGCCGGAGTCCTCCCTCT 62.825 72.222 5.05 0.00 46.96 3.69
4693 4916 2.835895 GCCGGAGTCCTCCCTCTC 60.836 72.222 5.05 0.00 46.96 3.20
4694 4917 2.517402 CCGGAGTCCTCCCTCTCG 60.517 72.222 7.77 0.00 46.96 4.04
4695 4918 2.517402 CGGAGTCCTCCCTCTCGG 60.517 72.222 7.77 0.00 46.96 4.63
4696 4919 2.835895 GGAGTCCTCCCTCTCGGC 60.836 72.222 0.41 0.00 43.94 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.046507 GAGCACAGCCACAGAGGG 60.047 66.667 0.00 0.00 38.09 4.30
4 5 1.375652 CAGAGCACAGCCACAGAGG 60.376 63.158 0.00 0.00 41.84 3.69
5 6 2.033755 GCAGAGCACAGCCACAGAG 61.034 63.158 0.00 0.00 0.00 3.35
6 7 2.031616 GCAGAGCACAGCCACAGA 59.968 61.111 0.00 0.00 0.00 3.41
7 8 3.054503 GGCAGAGCACAGCCACAG 61.055 66.667 12.62 0.00 45.97 3.66
38 39 1.373570 CTGGAAATCGGCAAGAGACC 58.626 55.000 0.00 0.00 0.00 3.85
40 41 1.275666 TCCTGGAAATCGGCAAGAGA 58.724 50.000 0.00 0.00 0.00 3.10
87 88 5.603596 CGTGCTGGTATAGGGTTGTTAATA 58.396 41.667 0.00 0.00 0.00 0.98
88 89 4.448210 CGTGCTGGTATAGGGTTGTTAAT 58.552 43.478 0.00 0.00 0.00 1.40
89 90 3.864243 CGTGCTGGTATAGGGTTGTTAA 58.136 45.455 0.00 0.00 0.00 2.01
128 141 1.615392 GGCCTTGCAGAGAAACAATGT 59.385 47.619 0.00 0.00 0.00 2.71
146 159 1.153509 GCCATTGCTCCATGTTGGC 60.154 57.895 0.00 0.00 45.31 4.52
181 194 4.133078 GGATTGATCCATGGACAAGAGAC 58.867 47.826 18.99 14.15 46.38 3.36
185 198 5.172455 AGCAAGGATTGATCCATGGACAAG 61.172 45.833 18.99 11.53 44.15 3.16
188 201 2.941480 AGCAAGGATTGATCCATGGAC 58.059 47.619 18.99 11.83 44.15 4.02
202 215 0.963962 AGCAAACATGTGGAGCAAGG 59.036 50.000 16.60 0.00 0.00 3.61
204 217 1.538634 GCAAGCAAACATGTGGAGCAA 60.539 47.619 16.60 0.00 0.00 3.91
224 237 4.085055 CGTTTGACAACACACTGTAGCTAG 60.085 45.833 0.00 0.00 32.54 3.42
225 238 3.799963 CGTTTGACAACACACTGTAGCTA 59.200 43.478 0.00 0.00 32.54 3.32
226 239 2.607635 CGTTTGACAACACACTGTAGCT 59.392 45.455 0.00 0.00 32.54 3.32
230 243 1.735571 GTCCGTTTGACAACACACTGT 59.264 47.619 0.00 0.00 43.85 3.55
232 245 1.065709 AGGTCCGTTTGACAACACACT 60.066 47.619 0.00 0.00 46.38 3.55
233 246 1.375551 AGGTCCGTTTGACAACACAC 58.624 50.000 0.00 0.00 46.38 3.82
234 247 2.937799 GTTAGGTCCGTTTGACAACACA 59.062 45.455 0.00 0.00 46.38 3.72
235 248 2.288729 GGTTAGGTCCGTTTGACAACAC 59.711 50.000 0.00 0.00 46.38 3.32
249 268 3.029570 CGGTTCCTAGCTTAGGTTAGGT 58.970 50.000 13.40 0.00 46.32 3.08
250 269 2.364647 CCGGTTCCTAGCTTAGGTTAGG 59.635 54.545 8.30 8.30 46.32 2.69
251 270 3.294214 TCCGGTTCCTAGCTTAGGTTAG 58.706 50.000 0.00 0.00 46.32 2.34
252 271 3.386932 TCCGGTTCCTAGCTTAGGTTA 57.613 47.619 0.00 0.00 46.32 2.85
253 272 2.242882 TCCGGTTCCTAGCTTAGGTT 57.757 50.000 0.00 0.00 46.32 3.50
254 273 2.317973 GATCCGGTTCCTAGCTTAGGT 58.682 52.381 0.00 0.00 46.32 3.08
270 289 4.072131 TGCTACTGAACAAAACTGGATCC 58.928 43.478 4.20 4.20 0.00 3.36
276 295 3.290948 TGGGTGCTACTGAACAAAACT 57.709 42.857 0.00 0.00 0.00 2.66
279 298 6.266558 ACAAAATATGGGTGCTACTGAACAAA 59.733 34.615 0.00 0.00 0.00 2.83
280 299 5.772672 ACAAAATATGGGTGCTACTGAACAA 59.227 36.000 0.00 0.00 0.00 2.83
281 300 5.321102 ACAAAATATGGGTGCTACTGAACA 58.679 37.500 0.00 0.00 0.00 3.18
282 301 5.414454 TGACAAAATATGGGTGCTACTGAAC 59.586 40.000 0.00 0.00 0.00 3.18
283 302 5.565509 TGACAAAATATGGGTGCTACTGAA 58.434 37.500 0.00 0.00 0.00 3.02
285 304 5.895636 TTGACAAAATATGGGTGCTACTG 57.104 39.130 0.00 0.00 0.00 2.74
286 305 6.426587 AGATTGACAAAATATGGGTGCTACT 58.573 36.000 0.00 0.00 0.00 2.57
287 306 6.238759 GGAGATTGACAAAATATGGGTGCTAC 60.239 42.308 0.00 0.00 0.00 3.58
289 308 4.646492 GGAGATTGACAAAATATGGGTGCT 59.354 41.667 0.00 0.00 0.00 4.40
291 310 5.418524 TGTGGAGATTGACAAAATATGGGTG 59.581 40.000 0.00 0.00 0.00 4.61
302 332 4.437682 AGTTTCCTTGTGGAGATTGACA 57.562 40.909 0.00 0.00 44.24 3.58
303 333 6.410540 AGATAGTTTCCTTGTGGAGATTGAC 58.589 40.000 0.00 0.00 44.24 3.18
312 342 6.988580 TGATCATGCTAGATAGTTTCCTTGTG 59.011 38.462 0.00 0.00 0.00 3.33
321 351 5.150715 TCCCAAGTGATCATGCTAGATAGT 58.849 41.667 0.00 0.00 0.00 2.12
322 352 5.735285 TCCCAAGTGATCATGCTAGATAG 57.265 43.478 0.00 0.00 0.00 2.08
334 364 3.911719 GGAGGCAATCCCAAGTGAT 57.088 52.632 0.00 0.00 43.01 3.06
343 373 0.529378 CAAAGCTGTGGGAGGCAATC 59.471 55.000 0.00 0.00 0.00 2.67
347 377 3.376918 GGCAAAGCTGTGGGAGGC 61.377 66.667 5.91 0.00 0.00 4.70
354 384 2.203337 TTCTGCGGGCAAAGCTGT 60.203 55.556 0.00 0.00 35.48 4.40
355 430 1.919956 CTCTTCTGCGGGCAAAGCTG 61.920 60.000 0.00 0.84 35.28 4.24
373 449 4.904251 AGGCCACATATGAGAGTATTGACT 59.096 41.667 10.38 0.00 39.20 3.41
376 452 5.468072 GTGAAGGCCACATATGAGAGTATTG 59.532 44.000 10.38 0.00 45.03 1.90
380 456 3.550437 GTGAAGGCCACATATGAGAGT 57.450 47.619 10.38 0.00 45.03 3.24
406 487 7.503566 TCCATGAAAGAAGAGAACTGAAACAAT 59.496 33.333 0.00 0.00 0.00 2.71
441 522 9.474313 TCCCAATTAGCTGAAAATAATTACAGT 57.526 29.630 0.00 0.00 31.90 3.55
458 539 2.547211 CTCGAAGCAGCATCCCAATTAG 59.453 50.000 0.00 0.00 0.00 1.73
463 544 1.078918 CACTCGAAGCAGCATCCCA 60.079 57.895 0.00 0.00 0.00 4.37
476 557 5.356882 TTCCTTTTTCAAGTATGCACTCG 57.643 39.130 0.00 0.00 32.29 4.18
484 566 8.357402 GTTCTTAGGCATTTCCTTTTTCAAGTA 58.643 33.333 0.00 0.00 44.75 2.24
508 593 7.178628 AGGTGTACACTATCTGTAGTTGATGTT 59.821 37.037 24.55 0.00 39.12 2.71
509 594 6.663953 AGGTGTACACTATCTGTAGTTGATGT 59.336 38.462 24.55 0.00 39.12 3.06
517 602 6.225981 TCGTCTAGGTGTACACTATCTGTA 57.774 41.667 24.55 4.69 33.91 2.74
518 603 5.095145 TCGTCTAGGTGTACACTATCTGT 57.905 43.478 24.55 6.40 36.82 3.41
519 604 5.049336 CCATCGTCTAGGTGTACACTATCTG 60.049 48.000 24.55 11.20 0.00 2.90
520 605 5.064558 CCATCGTCTAGGTGTACACTATCT 58.935 45.833 24.55 15.75 0.00 1.98
521 606 4.320348 GCCATCGTCTAGGTGTACACTATC 60.320 50.000 24.55 9.15 0.00 2.08
522 607 3.568853 GCCATCGTCTAGGTGTACACTAT 59.431 47.826 24.55 16.04 0.00 2.12
523 608 2.947652 GCCATCGTCTAGGTGTACACTA 59.052 50.000 24.55 13.80 0.00 2.74
524 609 1.749634 GCCATCGTCTAGGTGTACACT 59.250 52.381 24.55 13.41 0.00 3.55
525 610 1.533338 CGCCATCGTCTAGGTGTACAC 60.533 57.143 18.01 18.01 0.00 2.90
526 611 0.736636 CGCCATCGTCTAGGTGTACA 59.263 55.000 0.00 0.00 0.00 2.90
527 612 0.594284 GCGCCATCGTCTAGGTGTAC 60.594 60.000 0.00 0.00 37.71 2.90
528 613 0.750546 AGCGCCATCGTCTAGGTGTA 60.751 55.000 2.29 0.00 37.71 2.90
529 614 1.605058 AAGCGCCATCGTCTAGGTGT 61.605 55.000 2.29 0.00 37.71 4.16
530 615 1.141881 AAGCGCCATCGTCTAGGTG 59.858 57.895 2.29 0.00 38.14 4.00
531 616 1.141881 CAAGCGCCATCGTCTAGGT 59.858 57.895 2.29 0.00 38.14 3.08
532 617 2.240500 GCAAGCGCCATCGTCTAGG 61.241 63.158 2.29 0.00 38.14 3.02
533 618 2.580470 CGCAAGCGCCATCGTCTAG 61.580 63.158 2.29 0.00 38.14 2.43
534 619 2.582226 CGCAAGCGCCATCGTCTA 60.582 61.111 2.29 0.00 38.14 2.59
546 631 2.966309 GAAACAGGACGCCCGCAAG 61.966 63.158 0.00 0.00 37.58 4.01
547 632 2.975799 GAAACAGGACGCCCGCAA 60.976 61.111 0.00 0.00 37.58 4.85
549 634 4.699522 AGGAAACAGGACGCCCGC 62.700 66.667 0.00 0.00 37.58 6.13
550 635 2.032071 AAGGAAACAGGACGCCCG 59.968 61.111 0.00 0.00 37.58 6.13
551 636 0.250770 AAGAAGGAAACAGGACGCCC 60.251 55.000 0.00 0.00 0.00 6.13
552 637 0.875059 CAAGAAGGAAACAGGACGCC 59.125 55.000 0.00 0.00 0.00 5.68
553 638 1.878953 TCAAGAAGGAAACAGGACGC 58.121 50.000 0.00 0.00 0.00 5.19
577 662 0.898789 TGAGTGGGACCTTCGGAGAC 60.899 60.000 0.00 0.00 34.32 3.36
578 663 0.612174 CTGAGTGGGACCTTCGGAGA 60.612 60.000 0.00 0.00 0.00 3.71
579 664 0.900647 ACTGAGTGGGACCTTCGGAG 60.901 60.000 8.56 0.00 0.00 4.63
580 665 0.471211 AACTGAGTGGGACCTTCGGA 60.471 55.000 8.56 0.00 0.00 4.55
581 666 0.037232 GAACTGAGTGGGACCTTCGG 60.037 60.000 0.00 0.00 0.00 4.30
582 667 0.969894 AGAACTGAGTGGGACCTTCG 59.030 55.000 0.00 0.00 0.00 3.79
583 668 2.252714 AGAGAACTGAGTGGGACCTTC 58.747 52.381 0.00 0.00 0.00 3.46
584 669 2.407340 AGAGAACTGAGTGGGACCTT 57.593 50.000 0.00 0.00 0.00 3.50
585 670 2.252714 GAAGAGAACTGAGTGGGACCT 58.747 52.381 0.00 0.00 0.00 3.85
586 671 1.067495 CGAAGAGAACTGAGTGGGACC 60.067 57.143 0.00 0.00 0.00 4.46
587 672 1.067495 CCGAAGAGAACTGAGTGGGAC 60.067 57.143 0.00 0.00 0.00 4.46
588 673 1.257743 CCGAAGAGAACTGAGTGGGA 58.742 55.000 0.00 0.00 0.00 4.37
589 674 0.247736 CCCGAAGAGAACTGAGTGGG 59.752 60.000 0.00 0.00 0.00 4.61
590 675 0.969894 ACCCGAAGAGAACTGAGTGG 59.030 55.000 0.00 0.00 0.00 4.00
591 676 1.613925 TCACCCGAAGAGAACTGAGTG 59.386 52.381 0.00 0.00 0.00 3.51
592 677 1.889829 CTCACCCGAAGAGAACTGAGT 59.110 52.381 0.00 0.00 35.09 3.41
593 678 1.889829 ACTCACCCGAAGAGAACTGAG 59.110 52.381 5.87 0.00 36.91 3.35
594 679 1.996798 ACTCACCCGAAGAGAACTGA 58.003 50.000 5.87 0.00 36.91 3.41
595 680 2.164624 CCTACTCACCCGAAGAGAACTG 59.835 54.545 5.87 0.00 36.91 3.16
596 681 2.448453 CCTACTCACCCGAAGAGAACT 58.552 52.381 5.87 0.00 36.91 3.01
597 682 1.135053 GCCTACTCACCCGAAGAGAAC 60.135 57.143 5.87 0.00 36.91 3.01
598 683 1.183549 GCCTACTCACCCGAAGAGAA 58.816 55.000 5.87 0.00 36.91 2.87
599 684 0.039180 TGCCTACTCACCCGAAGAGA 59.961 55.000 5.87 0.00 36.91 3.10
600 685 0.457851 CTGCCTACTCACCCGAAGAG 59.542 60.000 0.00 0.00 39.04 2.85
601 686 0.251653 ACTGCCTACTCACCCGAAGA 60.252 55.000 0.00 0.00 0.00 2.87
602 687 0.108615 CACTGCCTACTCACCCGAAG 60.109 60.000 0.00 0.00 0.00 3.79
603 688 1.541310 CCACTGCCTACTCACCCGAA 61.541 60.000 0.00 0.00 0.00 4.30
604 689 1.982395 CCACTGCCTACTCACCCGA 60.982 63.158 0.00 0.00 0.00 5.14
605 690 1.330655 ATCCACTGCCTACTCACCCG 61.331 60.000 0.00 0.00 0.00 5.28
606 691 1.789523 TATCCACTGCCTACTCACCC 58.210 55.000 0.00 0.00 0.00 4.61
607 692 3.388024 TCAATATCCACTGCCTACTCACC 59.612 47.826 0.00 0.00 0.00 4.02
608 693 4.100189 ACTCAATATCCACTGCCTACTCAC 59.900 45.833 0.00 0.00 0.00 3.51
609 694 4.290093 ACTCAATATCCACTGCCTACTCA 58.710 43.478 0.00 0.00 0.00 3.41
610 695 4.946478 ACTCAATATCCACTGCCTACTC 57.054 45.455 0.00 0.00 0.00 2.59
611 696 4.141620 CCAACTCAATATCCACTGCCTACT 60.142 45.833 0.00 0.00 0.00 2.57
612 697 4.130118 CCAACTCAATATCCACTGCCTAC 58.870 47.826 0.00 0.00 0.00 3.18
613 698 3.433598 GCCAACTCAATATCCACTGCCTA 60.434 47.826 0.00 0.00 0.00 3.93
614 699 2.684927 GCCAACTCAATATCCACTGCCT 60.685 50.000 0.00 0.00 0.00 4.75
615 700 1.678101 GCCAACTCAATATCCACTGCC 59.322 52.381 0.00 0.00 0.00 4.85
616 701 1.678101 GGCCAACTCAATATCCACTGC 59.322 52.381 0.00 0.00 0.00 4.40
617 702 1.942657 CGGCCAACTCAATATCCACTG 59.057 52.381 2.24 0.00 0.00 3.66
618 703 1.134098 CCGGCCAACTCAATATCCACT 60.134 52.381 2.24 0.00 0.00 4.00
619 704 1.308998 CCGGCCAACTCAATATCCAC 58.691 55.000 2.24 0.00 0.00 4.02
620 705 0.465460 GCCGGCCAACTCAATATCCA 60.465 55.000 18.11 0.00 0.00 3.41
621 706 1.507141 CGCCGGCCAACTCAATATCC 61.507 60.000 23.46 0.00 0.00 2.59
622 707 1.941812 CGCCGGCCAACTCAATATC 59.058 57.895 23.46 0.00 0.00 1.63
623 708 2.186826 GCGCCGGCCAACTCAATAT 61.187 57.895 23.46 0.00 0.00 1.28
624 709 2.822255 GCGCCGGCCAACTCAATA 60.822 61.111 23.46 0.00 0.00 1.90
670 755 0.958091 CCCGACCATGAGCACAAAAA 59.042 50.000 0.00 0.00 0.00 1.94
671 756 0.893270 CCCCGACCATGAGCACAAAA 60.893 55.000 0.00 0.00 0.00 2.44
672 757 1.303236 CCCCGACCATGAGCACAAA 60.303 57.895 0.00 0.00 0.00 2.83
673 758 2.350895 CCCCGACCATGAGCACAA 59.649 61.111 0.00 0.00 0.00 3.33
674 759 3.716195 CCCCCGACCATGAGCACA 61.716 66.667 0.00 0.00 0.00 4.57
675 760 2.764637 AAACCCCCGACCATGAGCAC 62.765 60.000 0.00 0.00 0.00 4.40
676 761 2.478335 GAAACCCCCGACCATGAGCA 62.478 60.000 0.00 0.00 0.00 4.26
677 762 1.749258 GAAACCCCCGACCATGAGC 60.749 63.158 0.00 0.00 0.00 4.26
678 763 1.449601 CGAAACCCCCGACCATGAG 60.450 63.158 0.00 0.00 0.00 2.90
679 764 2.666207 CGAAACCCCCGACCATGA 59.334 61.111 0.00 0.00 0.00 3.07
680 765 2.246761 TAGCGAAACCCCCGACCATG 62.247 60.000 0.00 0.00 0.00 3.66
681 766 1.968050 CTAGCGAAACCCCCGACCAT 61.968 60.000 0.00 0.00 0.00 3.55
682 767 2.604079 TAGCGAAACCCCCGACCA 60.604 61.111 0.00 0.00 0.00 4.02
683 768 2.186125 CTAGCGAAACCCCCGACC 59.814 66.667 0.00 0.00 0.00 4.79
684 769 1.153686 GTCTAGCGAAACCCCCGAC 60.154 63.158 0.00 0.00 0.00 4.79
685 770 1.304713 AGTCTAGCGAAACCCCCGA 60.305 57.895 0.00 0.00 0.00 5.14
686 771 1.153628 CAGTCTAGCGAAACCCCCG 60.154 63.158 0.00 0.00 0.00 5.73
687 772 0.108281 GACAGTCTAGCGAAACCCCC 60.108 60.000 0.00 0.00 0.00 5.40
688 773 0.108281 GGACAGTCTAGCGAAACCCC 60.108 60.000 0.00 0.00 0.00 4.95
689 774 0.108281 GGGACAGTCTAGCGAAACCC 60.108 60.000 0.00 0.00 0.00 4.11
690 775 0.896226 AGGGACAGTCTAGCGAAACC 59.104 55.000 0.00 0.00 0.00 3.27
691 776 2.745515 AAGGGACAGTCTAGCGAAAC 57.254 50.000 0.00 0.00 0.00 2.78
692 777 4.464951 TGATTAAGGGACAGTCTAGCGAAA 59.535 41.667 0.00 0.00 0.00 3.46
693 778 4.021229 TGATTAAGGGACAGTCTAGCGAA 58.979 43.478 0.00 0.00 0.00 4.70
694 779 3.628008 TGATTAAGGGACAGTCTAGCGA 58.372 45.455 0.00 0.00 0.00 4.93
695 780 4.386867 TTGATTAAGGGACAGTCTAGCG 57.613 45.455 0.00 0.00 0.00 4.26
696 781 5.918608 TGATTGATTAAGGGACAGTCTAGC 58.081 41.667 0.00 0.00 0.00 3.42
697 782 6.481644 GCTTGATTGATTAAGGGACAGTCTAG 59.518 42.308 0.00 0.00 0.00 2.43
698 783 6.070251 TGCTTGATTGATTAAGGGACAGTCTA 60.070 38.462 0.00 0.00 0.00 2.59
699 784 5.189180 GCTTGATTGATTAAGGGACAGTCT 58.811 41.667 0.00 0.00 0.00 3.24
700 785 4.943705 TGCTTGATTGATTAAGGGACAGTC 59.056 41.667 0.00 0.00 0.00 3.51
701 786 4.922206 TGCTTGATTGATTAAGGGACAGT 58.078 39.130 0.00 0.00 0.00 3.55
702 787 5.826737 AGATGCTTGATTGATTAAGGGACAG 59.173 40.000 0.00 0.00 0.00 3.51
703 788 5.759059 AGATGCTTGATTGATTAAGGGACA 58.241 37.500 0.00 0.00 0.00 4.02
704 789 6.705863 AAGATGCTTGATTGATTAAGGGAC 57.294 37.500 0.00 0.00 0.00 4.46
705 790 6.664816 ACAAAGATGCTTGATTGATTAAGGGA 59.335 34.615 0.00 0.00 0.00 4.20
706 791 6.870769 ACAAAGATGCTTGATTGATTAAGGG 58.129 36.000 0.00 0.00 0.00 3.95
707 792 7.816031 ACAACAAAGATGCTTGATTGATTAAGG 59.184 33.333 0.00 0.00 0.00 2.69
708 793 8.752766 ACAACAAAGATGCTTGATTGATTAAG 57.247 30.769 0.00 0.00 0.00 1.85
709 794 9.545105 AAACAACAAAGATGCTTGATTGATTAA 57.455 25.926 0.00 0.00 0.00 1.40
710 795 9.545105 AAAACAACAAAGATGCTTGATTGATTA 57.455 25.926 0.00 0.00 0.00 1.75
711 796 8.441312 AAAACAACAAAGATGCTTGATTGATT 57.559 26.923 0.00 0.00 0.00 2.57
712 797 7.095940 CGAAAACAACAAAGATGCTTGATTGAT 60.096 33.333 0.00 0.00 0.00 2.57
713 798 6.198778 CGAAAACAACAAAGATGCTTGATTGA 59.801 34.615 0.00 0.00 0.00 2.57
714 799 6.349426 CGAAAACAACAAAGATGCTTGATTG 58.651 36.000 0.00 0.00 0.00 2.67
715 800 5.463061 CCGAAAACAACAAAGATGCTTGATT 59.537 36.000 0.00 0.00 0.00 2.57
716 801 4.984161 CCGAAAACAACAAAGATGCTTGAT 59.016 37.500 0.00 0.00 0.00 2.57
717 802 4.358851 CCGAAAACAACAAAGATGCTTGA 58.641 39.130 0.00 0.00 0.00 3.02
718 803 3.060339 GCCGAAAACAACAAAGATGCTTG 60.060 43.478 0.00 0.00 0.00 4.01
719 804 3.123050 GCCGAAAACAACAAAGATGCTT 58.877 40.909 0.00 0.00 0.00 3.91
720 805 2.545742 GGCCGAAAACAACAAAGATGCT 60.546 45.455 0.00 0.00 0.00 3.79
721 806 1.792367 GGCCGAAAACAACAAAGATGC 59.208 47.619 0.00 0.00 0.00 3.91
722 807 3.052036 CAGGCCGAAAACAACAAAGATG 58.948 45.455 0.00 0.00 0.00 2.90
723 808 2.545742 GCAGGCCGAAAACAACAAAGAT 60.546 45.455 0.00 0.00 0.00 2.40
724 809 1.202359 GCAGGCCGAAAACAACAAAGA 60.202 47.619 0.00 0.00 0.00 2.52
725 810 1.202405 AGCAGGCCGAAAACAACAAAG 60.202 47.619 0.00 0.00 0.00 2.77
726 811 0.820871 AGCAGGCCGAAAACAACAAA 59.179 45.000 0.00 0.00 0.00 2.83
727 812 0.383949 GAGCAGGCCGAAAACAACAA 59.616 50.000 0.00 0.00 0.00 2.83
728 813 0.465460 AGAGCAGGCCGAAAACAACA 60.465 50.000 0.00 0.00 0.00 3.33
729 814 0.668535 AAGAGCAGGCCGAAAACAAC 59.331 50.000 0.00 0.00 0.00 3.32
730 815 0.951558 GAAGAGCAGGCCGAAAACAA 59.048 50.000 0.00 0.00 0.00 2.83
731 816 0.889186 GGAAGAGCAGGCCGAAAACA 60.889 55.000 0.00 0.00 0.00 2.83
732 817 0.606673 AGGAAGAGCAGGCCGAAAAC 60.607 55.000 0.00 0.00 0.00 2.43
733 818 0.110486 AAGGAAGAGCAGGCCGAAAA 59.890 50.000 0.00 0.00 0.00 2.29
734 819 0.981183 TAAGGAAGAGCAGGCCGAAA 59.019 50.000 0.00 0.00 0.00 3.46
735 820 1.204146 ATAAGGAAGAGCAGGCCGAA 58.796 50.000 0.00 0.00 0.00 4.30
736 821 2.082140 TATAAGGAAGAGCAGGCCGA 57.918 50.000 0.00 0.00 0.00 5.54
737 822 2.872858 GTTTATAAGGAAGAGCAGGCCG 59.127 50.000 0.00 0.00 0.00 6.13
738 823 3.215151 GGTTTATAAGGAAGAGCAGGCC 58.785 50.000 0.00 0.00 0.00 5.19
739 824 2.872858 CGGTTTATAAGGAAGAGCAGGC 59.127 50.000 0.00 0.00 0.00 4.85
740 825 3.467803 CCGGTTTATAAGGAAGAGCAGG 58.532 50.000 0.00 0.00 0.00 4.85
741 826 3.467803 CCCGGTTTATAAGGAAGAGCAG 58.532 50.000 0.00 0.00 0.00 4.24
742 827 2.420967 GCCCGGTTTATAAGGAAGAGCA 60.421 50.000 0.00 0.00 0.00 4.26
743 828 2.219458 GCCCGGTTTATAAGGAAGAGC 58.781 52.381 0.00 0.00 0.00 4.09
744 829 2.171870 TGGCCCGGTTTATAAGGAAGAG 59.828 50.000 0.00 0.00 0.00 2.85
745 830 2.198336 TGGCCCGGTTTATAAGGAAGA 58.802 47.619 0.00 0.00 0.00 2.87
746 831 2.721425 TGGCCCGGTTTATAAGGAAG 57.279 50.000 0.00 0.00 0.00 3.46
747 832 3.673543 ATTGGCCCGGTTTATAAGGAA 57.326 42.857 0.00 0.00 0.00 3.36
748 833 3.203487 AGAATTGGCCCGGTTTATAAGGA 59.797 43.478 0.00 0.00 0.00 3.36
749 834 3.562182 AGAATTGGCCCGGTTTATAAGG 58.438 45.455 0.00 0.00 0.00 2.69
750 835 6.715264 AGAATAGAATTGGCCCGGTTTATAAG 59.285 38.462 0.00 0.00 0.00 1.73
751 836 6.607019 AGAATAGAATTGGCCCGGTTTATAA 58.393 36.000 0.00 0.00 0.00 0.98
752 837 6.195600 AGAATAGAATTGGCCCGGTTTATA 57.804 37.500 0.00 0.00 0.00 0.98
753 838 5.061721 AGAATAGAATTGGCCCGGTTTAT 57.938 39.130 0.00 0.00 0.00 1.40
754 839 4.513406 AGAATAGAATTGGCCCGGTTTA 57.487 40.909 0.00 0.00 0.00 2.01
755 840 3.382083 AGAATAGAATTGGCCCGGTTT 57.618 42.857 0.00 0.00 0.00 3.27
756 841 3.382083 AAGAATAGAATTGGCCCGGTT 57.618 42.857 0.00 0.00 0.00 4.44
757 842 3.382083 AAAGAATAGAATTGGCCCGGT 57.618 42.857 0.00 0.00 0.00 5.28
758 843 4.736126 AAAAAGAATAGAATTGGCCCGG 57.264 40.909 0.00 0.00 0.00 5.73
776 861 7.511028 AGGGTGGTCCTACAATTTTCATAAAAA 59.489 33.333 0.00 0.00 45.98 1.94
777 862 7.013834 AGGGTGGTCCTACAATTTTCATAAAA 58.986 34.615 0.00 0.00 45.98 1.52
778 863 6.435904 CAGGGTGGTCCTACAATTTTCATAAA 59.564 38.462 0.00 0.00 46.12 1.40
779 864 5.949354 CAGGGTGGTCCTACAATTTTCATAA 59.051 40.000 0.00 0.00 46.12 1.90
780 865 5.014755 ACAGGGTGGTCCTACAATTTTCATA 59.985 40.000 0.00 0.00 46.12 2.15
781 866 4.202673 ACAGGGTGGTCCTACAATTTTCAT 60.203 41.667 0.00 0.00 46.12 2.57
782 867 3.139397 ACAGGGTGGTCCTACAATTTTCA 59.861 43.478 0.00 0.00 46.12 2.69
783 868 3.756963 GACAGGGTGGTCCTACAATTTTC 59.243 47.826 0.00 0.00 46.12 2.29
784 869 3.763057 GACAGGGTGGTCCTACAATTTT 58.237 45.455 0.00 0.00 46.12 1.82
785 870 3.434940 GACAGGGTGGTCCTACAATTT 57.565 47.619 0.00 0.00 46.12 1.82
794 879 0.321996 GTCAAGAGGACAGGGTGGTC 59.678 60.000 0.00 0.00 46.19 4.02
795 880 2.453242 GTCAAGAGGACAGGGTGGT 58.547 57.895 0.00 0.00 46.19 4.16
833 918 8.798402 GCTTGATAATCTAGGTGTACACTATCT 58.202 37.037 24.55 15.75 0.00 1.98
834 919 8.577296 TGCTTGATAATCTAGGTGTACACTATC 58.423 37.037 24.55 20.34 0.00 2.08
835 920 8.361139 GTGCTTGATAATCTAGGTGTACACTAT 58.639 37.037 24.55 16.04 0.00 2.12
836 921 7.340999 TGTGCTTGATAATCTAGGTGTACACTA 59.659 37.037 24.55 13.80 0.00 2.74
837 922 6.154534 TGTGCTTGATAATCTAGGTGTACACT 59.845 38.462 24.55 13.41 0.00 3.55
838 923 6.338146 TGTGCTTGATAATCTAGGTGTACAC 58.662 40.000 18.01 18.01 0.00 2.90
839 924 6.538945 TGTGCTTGATAATCTAGGTGTACA 57.461 37.500 0.00 0.00 0.00 2.90
840 925 8.979574 GTAATGTGCTTGATAATCTAGGTGTAC 58.020 37.037 0.00 0.00 0.00 2.90
859 944 8.349245 TGGTGTGTAATTTTTCTCAGTAATGTG 58.651 33.333 0.00 0.00 0.00 3.21
862 947 9.912634 CAATGGTGTGTAATTTTTCTCAGTAAT 57.087 29.630 0.00 0.00 0.00 1.89
863 948 9.126151 TCAATGGTGTGTAATTTTTCTCAGTAA 57.874 29.630 0.00 0.00 0.00 2.24
864 949 8.684386 TCAATGGTGTGTAATTTTTCTCAGTA 57.316 30.769 0.00 0.00 0.00 2.74
890 999 9.975218 ACAAGTTCCCTCATTGTTAATAACTAT 57.025 29.630 4.67 0.00 33.49 2.12
897 1006 4.069304 CGGACAAGTTCCCTCATTGTTAA 58.931 43.478 0.00 0.00 42.27 2.01
898 1007 3.670625 CGGACAAGTTCCCTCATTGTTA 58.329 45.455 0.00 0.00 42.27 2.41
901 1010 0.804989 GCGGACAAGTTCCCTCATTG 59.195 55.000 0.00 0.00 42.27 2.82
902 1011 0.693049 AGCGGACAAGTTCCCTCATT 59.307 50.000 0.00 0.00 42.27 2.57
903 1012 1.207329 GTAGCGGACAAGTTCCCTCAT 59.793 52.381 0.00 0.00 42.27 2.90
904 1013 0.606604 GTAGCGGACAAGTTCCCTCA 59.393 55.000 0.00 0.00 42.27 3.86
905 1014 0.458025 CGTAGCGGACAAGTTCCCTC 60.458 60.000 0.00 0.00 42.27 4.30
906 1015 1.590147 CGTAGCGGACAAGTTCCCT 59.410 57.895 0.00 0.00 42.27 4.20
907 1016 4.180496 CGTAGCGGACAAGTTCCC 57.820 61.111 0.00 0.00 42.27 3.97
961 1074 0.476338 TTTGTCAGCCCCTGTGCTTA 59.524 50.000 0.00 0.00 40.32 3.09
969 1082 0.110486 TCTCCTGTTTTGTCAGCCCC 59.890 55.000 0.00 0.00 34.47 5.80
1025 1148 2.552599 TGGCAAACGTGTCCTTGATA 57.447 45.000 1.93 0.00 0.00 2.15
1212 1341 9.784531 CTTGTAGACAATGAAACCCAGATATAT 57.215 33.333 0.00 0.00 35.02 0.86
1623 1752 0.749454 GTGCCCCAGCCAGTAAGATG 60.749 60.000 0.00 0.00 38.69 2.90
1653 1782 1.617322 TGCTCGACTCTTGTGTAGGT 58.383 50.000 0.00 0.00 0.00 3.08
1702 1834 4.080863 GGTGAACACTGATATCTTGGGTCT 60.081 45.833 3.98 0.00 0.00 3.85
1751 1883 2.693591 TCACTAGGAAGCCGATGGTAAG 59.306 50.000 0.00 0.00 0.00 2.34
1827 1959 3.623906 ATGATCAGGTCCTTGACAGTG 57.376 47.619 0.09 0.00 33.68 3.66
1828 1960 4.647564 AAATGATCAGGTCCTTGACAGT 57.352 40.909 0.09 0.00 33.68 3.55
2166 2304 5.299279 TCTTAAAAGCAGGGTTGAAGTTGAG 59.701 40.000 0.00 0.00 0.00 3.02
2175 2313 3.497332 GTTCCCTCTTAAAAGCAGGGTT 58.503 45.455 18.70 0.00 40.93 4.11
2178 2316 2.084546 CGGTTCCCTCTTAAAAGCAGG 58.915 52.381 0.00 2.84 0.00 4.85
2181 2319 0.809385 GGCGGTTCCCTCTTAAAAGC 59.191 55.000 0.00 0.00 0.00 3.51
2259 2397 3.510459 TCTGATTGGAGTGAAGGACAGA 58.490 45.455 0.00 0.00 0.00 3.41
2333 2471 0.251354 CTCCAGGTGTCCACATCCAG 59.749 60.000 0.00 0.00 0.00 3.86
2570 2708 5.063880 ACTTGTGGTCTGTTTCCATAGTTC 58.936 41.667 0.00 0.00 37.30 3.01
2639 2780 2.969950 TGTAGGTTACTGACAGCACCTT 59.030 45.455 25.02 13.53 40.32 3.50
2827 2975 4.021104 TGACCACAGTGGAGAGTCTTTATG 60.021 45.833 27.39 0.00 40.96 1.90
2914 3062 4.640771 TTGTTCTCCATACTCCAAAGCT 57.359 40.909 0.00 0.00 0.00 3.74
2931 3079 2.030805 GTCCAGCGCAGAGAATTTTGTT 60.031 45.455 11.47 0.00 0.00 2.83
2954 3105 0.249120 ATCGAAATCACCGGACTGCA 59.751 50.000 9.46 0.00 0.00 4.41
3000 3151 4.018050 ACCCCTTCAAGATCATTAGCAACT 60.018 41.667 0.00 0.00 0.00 3.16
3001 3152 4.273318 ACCCCTTCAAGATCATTAGCAAC 58.727 43.478 0.00 0.00 0.00 4.17
3004 3155 4.786425 AGAACCCCTTCAAGATCATTAGC 58.214 43.478 0.00 0.00 0.00 3.09
3022 3173 1.230324 AGCTCAGCGTTTCCAAGAAC 58.770 50.000 0.00 0.00 0.00 3.01
3031 3182 4.041740 TCAACGATATTAGCTCAGCGTT 57.958 40.909 11.64 11.64 41.88 4.84
3048 3199 9.341899 AGATTTGTCGCTGTTATATTTTTCAAC 57.658 29.630 0.00 0.00 0.00 3.18
3051 3202 7.968405 ACCAGATTTGTCGCTGTTATATTTTTC 59.032 33.333 0.00 0.00 0.00 2.29
3056 3207 6.650807 CCATACCAGATTTGTCGCTGTTATAT 59.349 38.462 0.00 0.00 0.00 0.86
3094 3245 0.883814 GCTGCTGCTGTCAGTGTTCT 60.884 55.000 8.53 0.00 42.29 3.01
3098 3249 2.944429 GTGCTGCTGCTGTCAGTG 59.056 61.111 17.00 0.00 42.29 3.66
3103 3254 1.958205 GTTCTCGTGCTGCTGCTGT 60.958 57.895 17.00 0.00 40.48 4.40
3104 3255 1.226686 AAGTTCTCGTGCTGCTGCTG 61.227 55.000 17.00 9.33 40.48 4.41
3105 3256 0.533755 AAAGTTCTCGTGCTGCTGCT 60.534 50.000 17.00 0.00 40.48 4.24
3132 3283 2.088104 TCTCCAGTTGGTGACAGTCT 57.912 50.000 1.31 0.00 44.54 3.24
3164 3324 1.078759 CACTGTAGGCGCTTCTTCCG 61.079 60.000 7.64 0.00 0.00 4.30
3175 3335 0.537143 TGCAAGTTGCCCACTGTAGG 60.537 55.000 24.59 0.00 44.23 3.18
3181 3341 4.261741 CCATATATTCTGCAAGTTGCCCAC 60.262 45.833 24.59 0.00 44.23 4.61
3189 3349 6.938596 TGTTGGAGATCCATATATTCTGCAAG 59.061 38.462 15.96 0.00 44.80 4.01
3239 3399 2.737252 GTCAAATCTTCCACCGTCACTC 59.263 50.000 0.00 0.00 0.00 3.51
3242 3402 1.418264 TGGTCAAATCTTCCACCGTCA 59.582 47.619 0.00 0.00 0.00 4.35
3243 3403 2.076863 CTGGTCAAATCTTCCACCGTC 58.923 52.381 0.00 0.00 0.00 4.79
3244 3404 1.420138 ACTGGTCAAATCTTCCACCGT 59.580 47.619 0.00 0.00 0.00 4.83
3245 3405 2.185004 ACTGGTCAAATCTTCCACCG 57.815 50.000 0.00 0.00 0.00 4.94
3405 3568 3.899981 AAGAGCATGTTCCGCGGCA 62.900 57.895 23.51 14.97 0.00 5.69
3467 3636 3.473647 CCCCTCCGCAGATGCAGA 61.474 66.667 5.55 0.00 42.21 4.26
3620 3792 1.532868 AGCGCTTGACACTTTCATCAC 59.467 47.619 2.64 0.00 32.84 3.06
3646 3818 0.113580 GGGCCCCAGTTCCTAAACAA 59.886 55.000 12.23 0.00 37.88 2.83
3783 3959 3.258622 GCACCTCCTGTCACTAACTTACT 59.741 47.826 0.00 0.00 0.00 2.24
3789 3965 1.344438 CACTGCACCTCCTGTCACTAA 59.656 52.381 0.00 0.00 0.00 2.24
3812 3988 2.677836 CGCCAAATGCTAAGCTTAGACA 59.322 45.455 32.88 27.62 38.05 3.41
3813 3989 2.539750 GCGCCAAATGCTAAGCTTAGAC 60.540 50.000 32.88 23.74 38.05 2.59
3814 3990 1.670811 GCGCCAAATGCTAAGCTTAGA 59.329 47.619 32.88 19.52 38.05 2.10
3815 3991 1.268743 GGCGCCAAATGCTAAGCTTAG 60.269 52.381 26.20 26.20 38.05 2.18
3816 3992 0.738389 GGCGCCAAATGCTAAGCTTA 59.262 50.000 24.80 5.94 38.05 3.09
3818 3994 1.660560 CTGGCGCCAAATGCTAAGCT 61.661 55.000 32.09 0.00 38.05 3.74
3819 3995 1.226773 CTGGCGCCAAATGCTAAGC 60.227 57.895 32.09 0.00 38.05 3.09
3820 3996 1.226773 GCTGGCGCCAAATGCTAAG 60.227 57.895 32.09 17.17 38.05 2.18
3821 3997 2.884367 GCTGGCGCCAAATGCTAA 59.116 55.556 32.09 4.31 38.05 3.09
3845 4021 2.979813 TCAATGTCATGTCGCGATATCG 59.020 45.455 20.79 20.79 43.27 2.92
3864 4040 0.391661 GAAGGGCATCGCACTCTTCA 60.392 55.000 6.84 0.00 43.87 3.02
3920 4096 2.412591 AGTACCCTGGGGATGATCTTG 58.587 52.381 18.88 0.00 38.96 3.02
3921 4097 2.897823 AGTACCCTGGGGATGATCTT 57.102 50.000 18.88 0.00 38.96 2.40
3924 4100 2.780010 CAGAAAGTACCCTGGGGATGAT 59.220 50.000 18.88 0.00 38.96 2.45
4042 4219 5.238650 CCAACCTTTGAAGTTATTCGAGTGT 59.761 40.000 0.00 0.00 38.34 3.55
4075 4252 7.717875 AGTGCAGGAAGTGTTACAAATTACTTA 59.282 33.333 0.00 0.00 33.83 2.24
4076 4253 6.546034 AGTGCAGGAAGTGTTACAAATTACTT 59.454 34.615 0.00 0.00 36.18 2.24
4077 4254 6.062095 AGTGCAGGAAGTGTTACAAATTACT 58.938 36.000 0.00 0.00 0.00 2.24
4078 4255 6.204882 AGAGTGCAGGAAGTGTTACAAATTAC 59.795 38.462 0.00 0.00 0.00 1.89
4098 4275 2.820059 TTACAGGTGTGCAGAGAGTG 57.180 50.000 0.00 0.00 0.00 3.51
4148 4325 7.201652 GGAAAGGATCATAGTGCAGAGTTTTAC 60.202 40.741 0.00 0.00 0.00 2.01
4214 4391 2.529694 ACCCCCAATCCTATGTAGGGTA 59.470 50.000 6.25 0.00 41.17 3.69
4220 4435 4.957606 TTTACAACCCCCAATCCTATGT 57.042 40.909 0.00 0.00 0.00 2.29
4252 4467 9.812347 ATAAGATGGAGGTCAAAATAATGCATA 57.188 29.630 0.00 0.00 0.00 3.14
4327 4544 6.303839 AGAAGACAGTGAGTAGAGAGAAGTT 58.696 40.000 0.00 0.00 0.00 2.66
4379 4598 4.730949 AATTCCTTTGGATGATGCACAG 57.269 40.909 0.00 0.00 0.00 3.66
4382 4601 5.394443 GCAAGTAATTCCTTTGGATGATGCA 60.394 40.000 0.00 0.00 0.00 3.96
4386 4605 4.584874 TCGCAAGTAATTCCTTTGGATGA 58.415 39.130 0.00 0.00 39.48 2.92
4394 4613 8.062065 TCCAATAAATTTCGCAAGTAATTCCT 57.938 30.769 0.00 0.00 44.94 3.36
4406 4625 5.049828 GGCCAAATCCTCCAATAAATTTCG 58.950 41.667 0.00 0.00 0.00 3.46
4428 4647 1.180456 TGTTGAGTTGCATGGGCTGG 61.180 55.000 0.00 0.00 41.91 4.85
4446 4666 7.390027 CACTATAAAGAGGAATGGAGGGTATG 58.610 42.308 0.00 0.00 0.00 2.39
4448 4668 5.307196 GCACTATAAAGAGGAATGGAGGGTA 59.693 44.000 0.00 0.00 0.00 3.69
4449 4669 4.103311 GCACTATAAAGAGGAATGGAGGGT 59.897 45.833 0.00 0.00 0.00 4.34
4493 4715 4.406069 CAAATGTGCACTACAATTCGGAG 58.594 43.478 19.41 0.00 43.77 4.63
4509 4731 6.015519 TGTTCCTTTATTAGCACTGCAAATGT 60.016 34.615 3.30 0.00 0.00 2.71
4563 4786 0.589223 TGCGACATGTTTTTCGGGAC 59.411 50.000 0.00 0.00 35.73 4.46
4564 4787 0.871722 CTGCGACATGTTTTTCGGGA 59.128 50.000 0.00 0.00 35.73 5.14
4565 4788 0.591170 ACTGCGACATGTTTTTCGGG 59.409 50.000 0.00 0.00 35.73 5.14
4566 4789 1.262950 TCACTGCGACATGTTTTTCGG 59.737 47.619 0.00 0.00 35.73 4.30
4567 4790 2.298300 GTCACTGCGACATGTTTTTCG 58.702 47.619 0.00 0.00 44.69 3.46
4580 4803 3.302415 GGTTTTCGCAAAAATGTCACTGC 60.302 43.478 0.00 0.00 36.77 4.40
4581 4804 3.245048 GGGTTTTCGCAAAAATGTCACTG 59.755 43.478 0.00 0.00 36.77 3.66
4582 4805 3.132111 AGGGTTTTCGCAAAAATGTCACT 59.868 39.130 0.00 0.00 36.77 3.41
4583 4806 3.453424 AGGGTTTTCGCAAAAATGTCAC 58.547 40.909 0.00 0.00 36.77 3.67
4584 4807 3.383185 AGAGGGTTTTCGCAAAAATGTCA 59.617 39.130 0.00 0.00 36.77 3.58
4585 4808 3.977427 AGAGGGTTTTCGCAAAAATGTC 58.023 40.909 0.00 0.00 36.77 3.06
4586 4809 3.636764 AGAGAGGGTTTTCGCAAAAATGT 59.363 39.130 0.00 0.00 36.77 2.71
4587 4810 3.983344 CAGAGAGGGTTTTCGCAAAAATG 59.017 43.478 0.00 0.00 36.77 2.32
4588 4811 3.552890 GCAGAGAGGGTTTTCGCAAAAAT 60.553 43.478 0.00 0.00 36.77 1.82
4589 4812 2.223711 GCAGAGAGGGTTTTCGCAAAAA 60.224 45.455 0.00 0.00 35.07 1.94
4590 4813 1.336755 GCAGAGAGGGTTTTCGCAAAA 59.663 47.619 0.00 0.00 35.07 2.44
4591 4814 0.951558 GCAGAGAGGGTTTTCGCAAA 59.048 50.000 0.00 0.00 35.07 3.68
4592 4815 1.227999 CGCAGAGAGGGTTTTCGCAA 61.228 55.000 0.00 0.00 35.07 4.85
4593 4816 1.667830 CGCAGAGAGGGTTTTCGCA 60.668 57.895 0.00 0.00 35.07 5.10
4594 4817 0.949105 TTCGCAGAGAGGGTTTTCGC 60.949 55.000 0.00 0.00 38.43 4.70
4595 4818 1.726853 ATTCGCAGAGAGGGTTTTCG 58.273 50.000 0.00 0.00 38.43 3.46
4596 4819 2.420372 GGAATTCGCAGAGAGGGTTTTC 59.580 50.000 0.00 0.00 38.43 2.29
4597 4820 2.437413 GGAATTCGCAGAGAGGGTTTT 58.563 47.619 0.00 0.00 38.43 2.43
4598 4821 1.340114 GGGAATTCGCAGAGAGGGTTT 60.340 52.381 16.98 0.00 38.43 3.27
4599 4822 0.253327 GGGAATTCGCAGAGAGGGTT 59.747 55.000 16.98 0.00 38.43 4.11
4600 4823 1.908483 GGGAATTCGCAGAGAGGGT 59.092 57.895 16.98 0.00 38.43 4.34
4601 4824 1.227380 CGGGAATTCGCAGAGAGGG 60.227 63.158 20.97 0.69 38.43 4.30
4602 4825 0.528684 GTCGGGAATTCGCAGAGAGG 60.529 60.000 20.97 5.12 38.43 3.69
4603 4826 0.173481 TGTCGGGAATTCGCAGAGAG 59.827 55.000 20.97 5.78 38.43 3.20
4604 4827 0.108804 GTGTCGGGAATTCGCAGAGA 60.109 55.000 20.97 14.31 38.43 3.10
4605 4828 0.389817 TGTGTCGGGAATTCGCAGAG 60.390 55.000 20.97 6.46 38.43 3.35
4606 4829 0.034198 TTGTGTCGGGAATTCGCAGA 59.966 50.000 20.97 15.59 0.00 4.26
4607 4830 0.165944 GTTGTGTCGGGAATTCGCAG 59.834 55.000 20.97 13.78 0.00 5.18
4608 4831 1.231958 GGTTGTGTCGGGAATTCGCA 61.232 55.000 20.97 6.89 0.00 5.10
4609 4832 1.500396 GGTTGTGTCGGGAATTCGC 59.500 57.895 12.30 12.30 0.00 4.70
4610 4833 1.632046 CGGGTTGTGTCGGGAATTCG 61.632 60.000 0.00 0.00 0.00 3.34
4611 4834 1.918868 GCGGGTTGTGTCGGGAATTC 61.919 60.000 0.00 0.00 0.00 2.17
4612 4835 1.969589 GCGGGTTGTGTCGGGAATT 60.970 57.895 0.00 0.00 0.00 2.17
4613 4836 2.359478 GCGGGTTGTGTCGGGAAT 60.359 61.111 0.00 0.00 0.00 3.01
4614 4837 3.818121 CTGCGGGTTGTGTCGGGAA 62.818 63.158 0.00 0.00 0.00 3.97
4615 4838 4.308458 CTGCGGGTTGTGTCGGGA 62.308 66.667 0.00 0.00 0.00 5.14
4616 4839 4.619227 ACTGCGGGTTGTGTCGGG 62.619 66.667 0.00 0.00 0.00 5.14
4617 4840 3.041940 GACTGCGGGTTGTGTCGG 61.042 66.667 0.00 0.00 0.00 4.79
4618 4841 3.041940 GGACTGCGGGTTGTGTCG 61.042 66.667 0.00 0.00 0.00 4.35
4619 4842 2.668550 GGGACTGCGGGTTGTGTC 60.669 66.667 0.00 0.00 0.00 3.67
4620 4843 3.168528 AGGGACTGCGGGTTGTGT 61.169 61.111 0.00 0.00 37.18 3.72
4631 4854 2.037527 GGGAGACGACCAGGGACT 59.962 66.667 0.00 0.00 43.88 3.85
4632 4855 2.037527 AGGGAGACGACCAGGGAC 59.962 66.667 0.00 0.00 0.00 4.46
4633 4856 2.359404 GAGGGAGACGACCAGGGA 59.641 66.667 0.00 0.00 0.00 4.20
4634 4857 3.141488 CGAGGGAGACGACCAGGG 61.141 72.222 0.00 0.00 0.00 4.45
4635 4858 3.827898 GCGAGGGAGACGACCAGG 61.828 72.222 0.00 0.00 0.00 4.45
4636 4859 3.057547 CTGCGAGGGAGACGACCAG 62.058 68.421 0.00 0.00 0.00 4.00
4637 4860 3.062466 CTGCGAGGGAGACGACCA 61.062 66.667 0.00 0.00 0.00 4.02
4638 4861 4.500116 GCTGCGAGGGAGACGACC 62.500 72.222 0.00 0.00 0.00 4.79
4639 4862 4.500116 GGCTGCGAGGGAGACGAC 62.500 72.222 0.00 0.00 0.00 4.34
4640 4863 4.742649 AGGCTGCGAGGGAGACGA 62.743 66.667 0.00 0.00 0.00 4.20
4641 4864 4.200283 GAGGCTGCGAGGGAGACG 62.200 72.222 0.00 0.00 0.00 4.18
4642 4865 3.071206 TGAGGCTGCGAGGGAGAC 61.071 66.667 0.00 0.00 0.00 3.36
4643 4866 3.071206 GTGAGGCTGCGAGGGAGA 61.071 66.667 0.00 0.00 0.00 3.71
4644 4867 3.073735 AGTGAGGCTGCGAGGGAG 61.074 66.667 0.00 0.00 0.00 4.30
4645 4868 3.071206 GAGTGAGGCTGCGAGGGA 61.071 66.667 0.00 0.00 0.00 4.20
4646 4869 4.504916 CGAGTGAGGCTGCGAGGG 62.505 72.222 0.00 0.00 0.00 4.30
4647 4870 3.691744 GACGAGTGAGGCTGCGAGG 62.692 68.421 0.00 0.00 0.00 4.63
4648 4871 2.202544 GACGAGTGAGGCTGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
4649 4872 2.673341 AGACGAGTGAGGCTGCGA 60.673 61.111 0.00 0.00 0.00 5.10
4650 4873 2.202544 GAGACGAGTGAGGCTGCG 60.203 66.667 0.00 0.00 0.00 5.18
4651 4874 2.183046 GGAGACGAGTGAGGCTGC 59.817 66.667 0.00 0.00 0.00 5.25
4652 4875 2.716017 GGGGAGACGAGTGAGGCTG 61.716 68.421 0.00 0.00 0.00 4.85
4653 4876 2.363147 GGGGAGACGAGTGAGGCT 60.363 66.667 0.00 0.00 0.00 4.58
4654 4877 2.363147 AGGGGAGACGAGTGAGGC 60.363 66.667 0.00 0.00 0.00 4.70
4655 4878 2.716017 GCAGGGGAGACGAGTGAGG 61.716 68.421 0.00 0.00 0.00 3.86
4656 4879 2.888863 GCAGGGGAGACGAGTGAG 59.111 66.667 0.00 0.00 0.00 3.51
4657 4880 3.062466 CGCAGGGGAGACGAGTGA 61.062 66.667 0.00 0.00 0.00 3.41
4658 4881 4.803426 GCGCAGGGGAGACGAGTG 62.803 72.222 0.30 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.