Multiple sequence alignment - TraesCS3B01G101300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G101300 chr3B 100.000 9172 0 0 1 9172 68407173 68398002 0.000000e+00 16938.0
1 TraesCS3B01G101300 chr3B 79.301 1459 241 45 3184 4623 119084383 119085799 0.000000e+00 965.0
2 TraesCS3B01G101300 chr3B 79.121 1456 248 42 3184 4623 136489346 136487931 0.000000e+00 953.0
3 TraesCS3B01G101300 chr3B 96.697 545 14 3 8629 9172 68438111 68438652 0.000000e+00 904.0
4 TraesCS3B01G101300 chr3B 81.658 398 68 5 8053 8449 119089905 119090298 8.880000e-85 326.0
5 TraesCS3B01G101300 chr3B 93.548 186 12 0 4831 5016 67947265 67947450 2.520000e-70 278.0
6 TraesCS3B01G101300 chr3B 80.564 319 47 12 5295 5608 136487048 136486740 1.990000e-56 231.0
7 TraesCS3B01G101300 chr3B 97.059 136 4 0 831 966 611179095 611178960 7.160000e-56 230.0
8 TraesCS3B01G101300 chr3B 94.406 143 7 1 817 959 593869149 593869290 1.550000e-52 219.0
9 TraesCS3B01G101300 chr3B 92.157 153 8 4 5011 5160 68192315 68192466 7.210000e-51 213.0
10 TraesCS3B01G101300 chr3D 93.812 8128 402 53 957 9014 43779097 43787193 0.000000e+00 12129.0
11 TraesCS3B01G101300 chr3D 78.926 1452 248 41 3184 4623 73759593 73760998 0.000000e+00 933.0
12 TraesCS3B01G101300 chr3D 83.467 375 56 6 8077 8449 73764916 73765286 2.450000e-90 344.0
13 TraesCS3B01G101300 chr3D 93.596 203 13 0 243 445 43778267 43778469 4.160000e-78 303.0
14 TraesCS3B01G101300 chr3D 77.753 445 77 16 5174 5608 73761506 73761938 4.250000e-63 254.0
15 TraesCS3B01G101300 chr3D 95.364 151 6 1 101 250 43778079 43778229 1.190000e-58 239.0
16 TraesCS3B01G101300 chr3D 84.274 248 13 13 591 836 43778878 43779101 1.550000e-52 219.0
17 TraesCS3B01G101300 chr3D 88.889 180 13 3 9000 9172 43787225 43787404 2.010000e-51 215.0
18 TraesCS3B01G101300 chr3D 95.833 48 2 0 3 50 43778048 43778095 2.750000e-10 78.7
19 TraesCS3B01G101300 chr3D 93.750 48 3 0 249 296 536330622 536330575 1.280000e-08 73.1
20 TraesCS3B01G101300 chr3D 89.474 57 3 2 46 102 84672485 84672432 1.650000e-07 69.4
21 TraesCS3B01G101300 chr3A 92.855 5738 314 50 3258 8924 55563416 55557704 0.000000e+00 8237.0
22 TraesCS3B01G101300 chr3A 91.611 3171 184 44 5089 8197 55603334 55600184 0.000000e+00 4307.0
23 TraesCS3B01G101300 chr3A 91.317 1716 107 19 5089 6766 55605057 55603346 0.000000e+00 2305.0
24 TraesCS3B01G101300 chr3A 79.289 1463 248 38 3177 4623 86624801 86626224 0.000000e+00 972.0
25 TraesCS3B01G101300 chr3A 91.181 601 41 9 2656 3251 55607171 55606578 0.000000e+00 806.0
26 TraesCS3B01G101300 chr3A 92.308 442 33 1 2215 2656 55607905 55607465 2.170000e-175 627.0
27 TraesCS3B01G101300 chr3A 92.623 366 18 3 8560 8924 55600083 55599726 1.370000e-142 518.0
28 TraesCS3B01G101300 chr3A 89.640 222 15 3 591 812 55572958 55572745 9.070000e-70 276.0
29 TraesCS3B01G101300 chr3A 89.640 222 15 3 591 812 55616727 55616514 9.070000e-70 276.0
30 TraesCS3B01G101300 chr3A 88.889 171 19 0 5295 5465 86626819 86626989 2.590000e-50 211.0
31 TraesCS3B01G101300 chr3A 92.000 150 11 1 101 250 55573354 55573206 9.330000e-50 209.0
32 TraesCS3B01G101300 chr3A 91.333 150 12 1 101 250 55617123 55616975 4.340000e-48 204.0
33 TraesCS3B01G101300 chr3A 92.000 100 4 4 8953 9048 55557710 55557611 4.470000e-28 137.0
34 TraesCS3B01G101300 chr3A 90.217 92 2 2 9088 9172 55557608 55557517 7.530000e-21 113.0
35 TraesCS3B01G101300 chr3A 90.217 92 2 2 9088 9172 55599602 55599511 7.530000e-21 113.0
36 TraesCS3B01G101300 chr3A 96.774 62 2 0 8953 9014 55599732 55599671 4.530000e-18 104.0
37 TraesCS3B01G101300 chr3A 93.878 49 1 1 53 101 41998856 41998810 1.280000e-08 73.1
38 TraesCS3B01G101300 chr3A 95.556 45 2 0 3 47 55573385 55573341 1.280000e-08 73.1
39 TraesCS3B01G101300 chr3A 95.556 45 2 0 3 47 55617154 55617110 1.280000e-08 73.1
40 TraesCS3B01G101300 chrUn 94.009 1302 60 8 7625 8924 381218965 381220250 0.000000e+00 1956.0
41 TraesCS3B01G101300 chrUn 96.960 625 19 0 3826 4450 471930937 471931561 0.000000e+00 1050.0
42 TraesCS3B01G101300 chrUn 90.939 607 33 9 957 1545 463918117 463918719 0.000000e+00 797.0
43 TraesCS3B01G101300 chrUn 90.034 592 36 13 6811 7379 472805566 472806157 0.000000e+00 745.0
44 TraesCS3B01G101300 chrUn 89.613 491 34 8 6039 6512 475147720 475147230 7.870000e-170 608.0
45 TraesCS3B01G101300 chrUn 89.640 222 15 3 591 812 32515425 32515638 9.070000e-70 276.0
46 TraesCS3B01G101300 chrUn 92.000 150 11 1 101 250 32515029 32515177 9.330000e-50 209.0
47 TraesCS3B01G101300 chrUn 92.000 150 11 1 101 250 262108286 262108434 9.330000e-50 209.0
48 TraesCS3B01G101300 chrUn 92.000 150 11 1 101 250 282922821 282922673 9.330000e-50 209.0
49 TraesCS3B01G101300 chrUn 92.000 150 11 1 101 250 441820956 441821104 9.330000e-50 209.0
50 TraesCS3B01G101300 chrUn 90.000 130 6 2 591 720 262108682 262108804 2.650000e-35 161.0
51 TraesCS3B01G101300 chrUn 90.000 130 6 2 591 720 282922425 282922303 2.650000e-35 161.0
52 TraesCS3B01G101300 chrUn 83.448 145 19 4 1711 1852 96471029 96471171 7.470000e-26 130.0
53 TraesCS3B01G101300 chrUn 80.795 151 25 4 1712 1860 147088675 147088823 2.090000e-21 115.0
54 TraesCS3B01G101300 chrUn 80.795 151 25 4 1712 1860 210791179 210791031 2.090000e-21 115.0
55 TraesCS3B01G101300 chrUn 90.217 92 2 2 9088 9172 381220370 381220461 7.530000e-21 113.0
56 TraesCS3B01G101300 chrUn 90.217 92 2 2 9088 9172 387676761 387676670 7.530000e-21 113.0
57 TraesCS3B01G101300 chrUn 90.217 92 2 2 9088 9172 388111092 388111183 7.530000e-21 113.0
58 TraesCS3B01G101300 chrUn 80.132 151 26 4 1712 1860 146902790 146902938 9.740000e-20 110.0
59 TraesCS3B01G101300 chrUn 80.132 151 26 4 1712 1860 146930253 146930401 9.740000e-20 110.0
60 TraesCS3B01G101300 chrUn 80.132 151 26 4 1712 1860 147063443 147063591 9.740000e-20 110.0
61 TraesCS3B01G101300 chrUn 80.132 151 26 4 1712 1860 210807711 210807563 9.740000e-20 110.0
62 TraesCS3B01G101300 chrUn 80.132 151 26 4 1712 1860 306657560 306657708 9.740000e-20 110.0
63 TraesCS3B01G101300 chrUn 95.161 62 3 0 8953 9014 381220244 381220305 2.110000e-16 99.0
64 TraesCS3B01G101300 chrUn 95.556 45 2 0 3 47 32514998 32515042 1.280000e-08 73.1
65 TraesCS3B01G101300 chrUn 95.556 45 2 0 3 47 262108255 262108299 1.280000e-08 73.1
66 TraesCS3B01G101300 chrUn 95.556 45 2 0 3 47 282922852 282922808 1.280000e-08 73.1
67 TraesCS3B01G101300 chrUn 95.556 45 2 0 3 47 441820925 441820969 1.280000e-08 73.1
68 TraesCS3B01G101300 chr5A 78.723 376 54 8 1259 1617 590600691 590601057 2.580000e-55 228.0
69 TraesCS3B01G101300 chr5A 95.070 142 6 1 819 960 652657852 652657712 1.200000e-53 222.0
70 TraesCS3B01G101300 chr5A 92.623 122 6 3 482 601 69844782 69844902 1.220000e-38 172.0
71 TraesCS3B01G101300 chr5A 92.157 51 2 2 51 101 44983654 44983606 4.590000e-08 71.3
72 TraesCS3B01G101300 chr5B 97.710 131 3 0 830 960 96879071 96878941 9.270000e-55 226.0
73 TraesCS3B01G101300 chr5B 94.366 142 6 2 818 958 109317147 109317007 5.580000e-52 217.0
74 TraesCS3B01G101300 chr5B 79.012 324 37 16 1259 1562 577305676 577305988 9.400000e-45 193.0
75 TraesCS3B01G101300 chr5B 90.076 131 11 2 478 606 350415088 350414958 1.580000e-37 169.0
76 TraesCS3B01G101300 chr2B 97.015 134 3 1 826 958 677014661 677014528 3.330000e-54 224.0
77 TraesCS3B01G101300 chr5D 80.435 322 36 14 1259 1562 469556898 469557210 4.310000e-53 220.0
78 TraesCS3B01G101300 chr5D 86.452 155 19 2 1712 1864 175300057 175299903 1.580000e-37 169.0
79 TraesCS3B01G101300 chr7B 93.662 142 9 0 826 967 350883086 350883227 7.210000e-51 213.0
80 TraesCS3B01G101300 chr7B 95.745 47 2 0 249 295 605072450 605072404 9.880000e-10 76.8
81 TraesCS3B01G101300 chr2D 93.151 146 8 2 832 977 622315658 622315801 7.210000e-51 213.0
82 TraesCS3B01G101300 chr2D 85.430 151 19 3 1712 1861 600403789 600403937 4.440000e-33 154.0
83 TraesCS3B01G101300 chr2D 84.967 153 18 4 1712 1861 241661894 241662044 5.740000e-32 150.0
84 TraesCS3B01G101300 chr2D 93.478 46 3 0 249 294 351973395 351973350 1.650000e-07 69.4
85 TraesCS3B01G101300 chr6B 90.123 162 15 1 820 981 678328948 678328788 9.330000e-50 209.0
86 TraesCS3B01G101300 chr6B 95.536 112 4 1 486 597 288130820 288130930 2.630000e-40 178.0
87 TraesCS3B01G101300 chr6B 86.275 153 16 4 1712 1861 617176582 617176732 2.650000e-35 161.0
88 TraesCS3B01G101300 chr6B 92.000 50 2 1 51 100 42749496 42749449 1.650000e-07 69.4
89 TraesCS3B01G101300 chr7D 95.536 112 5 0 482 593 379324126 379324237 7.320000e-41 180.0
90 TraesCS3B01G101300 chr7D 93.966 116 5 2 478 593 615266603 615266716 3.400000e-39 174.0
91 TraesCS3B01G101300 chr7D 86.275 153 16 4 1712 1861 34756866 34757016 2.650000e-35 161.0
92 TraesCS3B01G101300 chr7D 85.621 153 20 2 1711 1861 535326814 535326662 9.530000e-35 159.0
93 TraesCS3B01G101300 chr1A 87.421 159 16 3 1711 1866 155857860 155857703 7.320000e-41 180.0
94 TraesCS3B01G101300 chr1A 90.769 130 7 5 480 608 343396690 343396815 1.580000e-37 169.0
95 TraesCS3B01G101300 chr1A 89.922 129 12 1 479 606 577843328 577843456 2.050000e-36 165.0
96 TraesCS3B01G101300 chr1D 91.406 128 7 3 483 609 386156831 386156707 1.220000e-38 172.0
97 TraesCS3B01G101300 chr1D 85.417 144 17 4 1712 1852 104291533 104291675 7.420000e-31 147.0
98 TraesCS3B01G101300 chr1D 82.635 167 22 6 1711 1873 361207755 361207918 3.450000e-29 141.0
99 TraesCS3B01G101300 chr1B 93.220 118 7 1 480 597 624662912 624663028 1.220000e-38 172.0
100 TraesCS3B01G101300 chr1B 92.000 50 2 2 53 102 401443423 401443376 1.650000e-07 69.4
101 TraesCS3B01G101300 chr4D 84.568 162 21 3 1712 1870 74079504 74079344 3.430000e-34 158.0
102 TraesCS3B01G101300 chr4D 84.211 152 19 4 1712 1860 296729394 296729543 9.600000e-30 143.0
103 TraesCS3B01G101300 chr4D 90.566 53 4 1 246 298 48718634 48718685 1.650000e-07 69.4
104 TraesCS3B01G101300 chr6D 85.621 153 17 4 1712 1861 410398279 410398429 1.230000e-33 156.0
105 TraesCS3B01G101300 chr6D 84.967 153 18 4 1712 1861 256728602 256728452 5.740000e-32 150.0
106 TraesCS3B01G101300 chr6D 84.967 153 18 4 1712 1861 256729399 256729249 5.740000e-32 150.0
107 TraesCS3B01G101300 chr6D 84.868 152 20 3 1712 1861 392273226 392273076 5.740000e-32 150.0
108 TraesCS3B01G101300 chr6D 84.314 153 20 4 1712 1861 349988587 349988436 7.420000e-31 147.0
109 TraesCS3B01G101300 chr6D 83.766 154 19 5 1711 1861 320698232 320698082 3.450000e-29 141.0
110 TraesCS3B01G101300 chr6D 87.879 99 11 1 1712 1810 296197005 296196908 2.090000e-21 115.0
111 TraesCS3B01G101300 chr6D 84.615 117 14 3 1711 1824 27511165 27511280 7.530000e-21 113.0
112 TraesCS3B01G101300 chr6D 92.157 51 4 0 50 100 460808334 460808284 1.280000e-08 73.1
113 TraesCS3B01G101300 chr2A 97.959 49 1 0 52 100 709838647 709838695 1.640000e-12 86.1
114 TraesCS3B01G101300 chr2A 95.652 46 2 0 249 294 469789726 469789681 3.550000e-09 75.0
115 TraesCS3B01G101300 chr7A 90.476 63 4 2 45 107 725268538 725268598 2.120000e-11 82.4
116 TraesCS3B01G101300 chr4B 95.745 47 2 0 54 100 38414121 38414075 9.880000e-10 76.8
117 TraesCS3B01G101300 chr4B 93.750 48 3 0 249 296 255388219 255388172 1.280000e-08 73.1
118 TraesCS3B01G101300 chr4B 92.000 50 4 0 246 295 600920027 600920076 4.590000e-08 71.3
119 TraesCS3B01G101300 chr6A 92.000 50 4 0 252 301 101842665 101842616 4.590000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G101300 chr3B 68398002 68407173 9171 True 16938.000000 16938 100.000000 1 9172 1 chr3B.!!$R1 9171
1 TraesCS3B01G101300 chr3B 119084383 119085799 1416 False 965.000000 965 79.301000 3184 4623 1 chr3B.!!$F4 1439
2 TraesCS3B01G101300 chr3B 68438111 68438652 541 False 904.000000 904 96.697000 8629 9172 1 chr3B.!!$F3 543
3 TraesCS3B01G101300 chr3B 136486740 136489346 2606 True 592.000000 953 79.842500 3184 5608 2 chr3B.!!$R3 2424
4 TraesCS3B01G101300 chr3D 43778048 43787404 9356 False 2197.283333 12129 91.961333 3 9172 6 chr3D.!!$F1 9169
5 TraesCS3B01G101300 chr3D 73759593 73765286 5693 False 510.333333 933 80.048667 3184 8449 3 chr3D.!!$F2 5265
6 TraesCS3B01G101300 chr3A 55557517 55563416 5899 True 2829.000000 8237 91.690667 3258 9172 3 chr3A.!!$R2 5914
7 TraesCS3B01G101300 chr3A 55599511 55607905 8394 True 1254.285714 4307 92.290143 2215 9172 7 chr3A.!!$R4 6957
8 TraesCS3B01G101300 chr3A 86624801 86626989 2188 False 591.500000 972 84.089000 3177 5465 2 chr3A.!!$F1 2288
9 TraesCS3B01G101300 chrUn 471930937 471931561 624 False 1050.000000 1050 96.960000 3826 4450 1 chrUn.!!$F9 624
10 TraesCS3B01G101300 chrUn 463918117 463918719 602 False 797.000000 797 90.939000 957 1545 1 chrUn.!!$F8 588
11 TraesCS3B01G101300 chrUn 472805566 472806157 591 False 745.000000 745 90.034000 6811 7379 1 chrUn.!!$F10 568
12 TraesCS3B01G101300 chrUn 381218965 381220461 1496 False 722.666667 1956 93.129000 7625 9172 3 chrUn.!!$F13 1547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 917 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.0 0.00 4.55 F
1115 1536 0.114364 TACACCTCTCCTGTGCTCCA 59.886 55.000 0.00 0.0 37.22 3.86 F
2178 2618 0.250901 GGCTTTGCTTGGAGGACTCA 60.251 55.000 1.32 0.0 0.00 3.41 F
2626 3072 1.194218 TCGACATCAGGCATCCTTCA 58.806 50.000 0.00 0.0 0.00 3.02 F
2627 3073 1.764723 TCGACATCAGGCATCCTTCAT 59.235 47.619 0.00 0.0 0.00 2.57 F
3650 4403 2.165357 AGAGGCAAATGAAATCCCCC 57.835 50.000 0.00 0.0 0.00 5.40 F
3967 4720 5.011635 ACAAACAAGGAGGTTTTGTTCAGTT 59.988 36.000 4.09 0.0 45.28 3.16 F
5574 6619 1.003839 AGCGTCGCCAAGATGGAAA 60.004 52.632 14.86 0.0 40.96 3.13 F
6934 10451 0.396435 TCACATCCGGCTTCTGTGTT 59.604 50.000 19.06 0.0 40.81 3.32 F
6981 10498 0.458260 ACACACACACGCACACTCTA 59.542 50.000 0.00 0.0 0.00 2.43 F
7823 11379 1.189524 CCCGGGTAAGGGCGATGATA 61.190 60.000 14.18 0.0 45.72 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2438 0.675083 CCAATTTCAGGCTGCACACA 59.325 50.000 10.34 0.00 0.00 3.72 R
2188 2628 2.087646 GCTTTAGGTCCTTGCTTCCTG 58.912 52.381 0.00 0.00 33.34 3.86 R
4095 4848 1.620323 AGAAACTTCCCCTGCAAATGC 59.380 47.619 0.00 0.00 42.50 3.56 R
4573 5331 0.804364 CTTCCGCAAGTTGCATGCTA 59.196 50.000 26.56 8.83 45.36 3.49 R
4694 5703 6.942532 ACTTGTCACTTTGCTCTTTGATAA 57.057 33.333 0.00 0.00 0.00 1.75 R
4860 5873 2.729194 TGCTAATACACCGCCCAAAAT 58.271 42.857 0.00 0.00 0.00 1.82 R
5986 7083 0.109365 CTCTCGACTGTCCAGTGCAG 60.109 60.000 4.35 0.71 42.66 4.41 R
6983 10500 0.799534 GCATTTTGCGCGCATCTCTT 60.800 50.000 36.83 15.39 31.71 2.85 R
7923 11480 1.486211 AGCTACATAGGCCAACGACT 58.514 50.000 5.01 0.00 0.00 4.18 R
7978 11535 2.098614 TGCTCAGTCTCTCCTCATGTC 58.901 52.381 0.00 0.00 0.00 3.06 R
8722 12370 2.613026 TTATACCAGGTGCATGACGG 57.387 50.000 0.76 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.840666 AGTGGACATACATGGGGCTATAG 59.159 47.826 0.00 0.00 0.00 1.31
43 44 3.583086 GTGGACATACATGGGGCTATAGT 59.417 47.826 0.84 0.00 0.00 2.12
44 45 4.775780 GTGGACATACATGGGGCTATAGTA 59.224 45.833 0.84 0.00 0.00 1.82
45 46 5.425539 GTGGACATACATGGGGCTATAGTAT 59.574 44.000 0.84 0.00 0.00 2.12
46 47 5.425217 TGGACATACATGGGGCTATAGTATG 59.575 44.000 14.43 14.43 44.55 2.39
52 53 9.905713 CATACATGGGGCTATAGTATGTATTTT 57.094 33.333 19.70 8.15 40.84 1.82
85 86 9.814899 CATAAATAATTTGGATTGCTTACCACA 57.185 29.630 0.00 0.00 35.81 4.17
87 88 8.721019 AAATAATTTGGATTGCTTACCACATG 57.279 30.769 0.00 0.00 35.81 3.21
88 89 5.743636 AATTTGGATTGCTTACCACATGT 57.256 34.783 0.00 0.00 35.81 3.21
89 90 4.517952 TTTGGATTGCTTACCACATGTG 57.482 40.909 19.31 19.31 35.81 3.21
90 91 3.153369 TGGATTGCTTACCACATGTGT 57.847 42.857 23.79 14.29 0.00 3.72
91 92 3.081061 TGGATTGCTTACCACATGTGTC 58.919 45.455 23.79 11.95 0.00 3.67
92 93 3.081061 GGATTGCTTACCACATGTGTCA 58.919 45.455 23.79 8.71 0.00 3.58
93 94 3.119849 GGATTGCTTACCACATGTGTCAC 60.120 47.826 23.79 9.40 0.00 3.67
94 95 1.507562 TGCTTACCACATGTGTCACG 58.492 50.000 23.79 11.29 0.00 4.35
95 96 1.202592 TGCTTACCACATGTGTCACGT 60.203 47.619 23.79 16.29 0.00 4.49
96 97 1.194547 GCTTACCACATGTGTCACGTG 59.805 52.381 23.79 21.25 40.80 4.49
98 99 4.454948 CCACATGTGTCACGTGGT 57.545 55.556 25.31 11.12 44.27 4.16
99 100 3.597550 CCACATGTGTCACGTGGTA 57.402 52.632 25.31 1.73 44.27 3.25
100 101 1.428448 CCACATGTGTCACGTGGTAG 58.572 55.000 25.31 15.71 44.27 3.18
101 102 1.428448 CACATGTGTCACGTGGTAGG 58.572 55.000 25.31 10.83 39.36 3.18
102 103 0.320374 ACATGTGTCACGTGGTAGGG 59.680 55.000 25.31 4.19 39.36 3.53
103 104 0.391130 CATGTGTCACGTGGTAGGGG 60.391 60.000 17.00 0.00 31.65 4.79
104 105 2.047560 GTGTCACGTGGTAGGGGC 60.048 66.667 17.00 0.00 0.00 5.80
105 106 2.203728 TGTCACGTGGTAGGGGCT 60.204 61.111 17.00 0.00 0.00 5.19
106 107 1.077086 TGTCACGTGGTAGGGGCTA 59.923 57.895 17.00 0.00 0.00 3.93
107 108 0.324923 TGTCACGTGGTAGGGGCTAT 60.325 55.000 17.00 0.00 0.00 2.97
108 109 1.063792 TGTCACGTGGTAGGGGCTATA 60.064 52.381 17.00 0.00 0.00 1.31
139 140 4.202020 TGGCTACAGTAAGTCGCTATTCTG 60.202 45.833 0.00 0.00 38.83 3.02
151 152 2.483714 CGCTATTCTGGTACACATGGCT 60.484 50.000 0.00 0.00 31.05 4.75
157 158 4.682778 TCTGGTACACATGGCTATAACC 57.317 45.455 0.00 0.00 0.00 2.85
185 186 3.060339 GCACTTTGAAAAATTGCCTGACG 60.060 43.478 4.27 0.00 0.00 4.35
236 237 9.857957 TTGTTTTCGGGAACAAAAATATATACC 57.142 29.630 12.67 0.00 44.13 2.73
240 241 6.536447 TCGGGAACAAAAATATATACCCTCC 58.464 40.000 0.00 0.00 34.55 4.30
242 243 6.466759 CGGGAACAAAAATATATACCCTCCCT 60.467 42.308 0.00 0.00 37.27 4.20
243 244 7.256763 CGGGAACAAAAATATATACCCTCCCTA 60.257 40.741 0.00 0.00 37.27 3.53
244 245 8.621073 GGGAACAAAAATATATACCCTCCCTAT 58.379 37.037 0.00 0.00 36.61 2.57
300 347 4.030913 TGGATCGGAAGGAGTAGTTGAAT 58.969 43.478 0.00 0.00 0.00 2.57
306 353 5.591877 TCGGAAGGAGTAGTTGAATAGGTAC 59.408 44.000 0.00 0.00 0.00 3.34
313 360 9.435570 AGGAGTAGTTGAATAGGTACACATAAT 57.564 33.333 0.00 0.00 0.00 1.28
319 366 7.495934 AGTTGAATAGGTACACATAATGACAGC 59.504 37.037 0.00 0.00 0.00 4.40
323 370 2.864343 GGTACACATAATGACAGCGGTC 59.136 50.000 10.32 10.32 44.57 4.79
379 426 8.428852 TGCTATGATCTGGCTACTGTAAAAATA 58.571 33.333 0.00 0.00 31.45 1.40
412 459 0.097674 CCATCAAGCGGCTTTCTTCG 59.902 55.000 13.53 1.26 0.00 3.79
416 463 0.868406 CAAGCGGCTTTCTTCGAACT 59.132 50.000 13.53 0.00 0.00 3.01
445 492 7.000472 TGACTTTGTTGGAGATGAAGATTTCT 59.000 34.615 0.00 0.00 0.00 2.52
446 493 7.503566 TGACTTTGTTGGAGATGAAGATTTCTT 59.496 33.333 0.00 0.00 39.23 2.52
447 494 8.242729 ACTTTGTTGGAGATGAAGATTTCTTT 57.757 30.769 0.00 0.00 36.11 2.52
448 495 8.699130 ACTTTGTTGGAGATGAAGATTTCTTTT 58.301 29.630 0.00 0.00 36.11 2.27
449 496 9.538508 CTTTGTTGGAGATGAAGATTTCTTTTT 57.461 29.630 0.00 0.00 36.11 1.94
485 900 6.376299 TGGAGAGATGAAGATTTCCACAAATG 59.624 38.462 0.00 0.00 31.94 2.32
486 901 6.376581 GGAGAGATGAAGATTTCCACAAATGT 59.623 38.462 0.00 0.00 31.94 2.71
487 902 7.554118 GGAGAGATGAAGATTTCCACAAATGTA 59.446 37.037 0.00 0.00 31.94 2.29
488 903 8.273780 AGAGATGAAGATTTCCACAAATGTAC 57.726 34.615 0.00 0.00 31.94 2.90
489 904 8.105829 AGAGATGAAGATTTCCACAAATGTACT 58.894 33.333 0.00 0.00 31.94 2.73
490 905 8.273780 AGATGAAGATTTCCACAAATGTACTC 57.726 34.615 0.00 0.00 31.94 2.59
491 906 6.817765 TGAAGATTTCCACAAATGTACTCC 57.182 37.500 0.00 0.00 31.94 3.85
492 907 5.710099 TGAAGATTTCCACAAATGTACTCCC 59.290 40.000 0.00 0.00 31.94 4.30
493 908 5.520748 AGATTTCCACAAATGTACTCCCT 57.479 39.130 0.00 0.00 31.94 4.20
494 909 5.501156 AGATTTCCACAAATGTACTCCCTC 58.499 41.667 0.00 0.00 31.94 4.30
495 910 3.713826 TTCCACAAATGTACTCCCTCC 57.286 47.619 0.00 0.00 0.00 4.30
496 911 1.553248 TCCACAAATGTACTCCCTCCG 59.447 52.381 0.00 0.00 0.00 4.63
497 912 1.278127 CCACAAATGTACTCCCTCCGT 59.722 52.381 0.00 0.00 0.00 4.69
498 913 2.290071 CCACAAATGTACTCCCTCCGTT 60.290 50.000 0.00 0.00 0.00 4.44
499 914 3.000727 CACAAATGTACTCCCTCCGTTC 58.999 50.000 0.00 0.00 0.00 3.95
500 915 2.027469 ACAAATGTACTCCCTCCGTTCC 60.027 50.000 0.00 0.00 0.00 3.62
501 916 0.822164 AATGTACTCCCTCCGTTCCG 59.178 55.000 0.00 0.00 0.00 4.30
502 917 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
503 918 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
504 919 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
505 920 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
506 921 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
507 922 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
508 923 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
509 924 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
510 925 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
511 926 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
512 927 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
513 928 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
514 929 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
515 930 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
516 931 2.156117 CGTTCCGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 35.93 4.85
517 932 3.720920 CGTTCCGAATTACTTGTCGCAAG 60.721 47.826 15.16 15.16 35.93 4.01
535 950 6.644191 CGCAAGAATGGATGTATCTAGATG 57.356 41.667 15.79 0.00 43.02 2.90
536 951 6.162079 CGCAAGAATGGATGTATCTAGATGT 58.838 40.000 15.79 1.25 43.02 3.06
537 952 7.315890 CGCAAGAATGGATGTATCTAGATGTA 58.684 38.462 15.79 4.44 43.02 2.29
538 953 7.978414 CGCAAGAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 43.02 2.29
539 954 9.664332 GCAAGAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 6.57 0.00 1.89
566 981 7.664082 AATTCTAGATACATCCATTTCAGCG 57.336 36.000 0.00 0.00 0.00 5.18
567 982 6.405278 TTCTAGATACATCCATTTCAGCGA 57.595 37.500 0.00 0.00 0.00 4.93
568 983 5.773575 TCTAGATACATCCATTTCAGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
569 984 4.679373 AGATACATCCATTTCAGCGACT 57.321 40.909 0.00 0.00 0.00 4.18
570 985 5.791336 AGATACATCCATTTCAGCGACTA 57.209 39.130 0.00 0.00 0.00 2.59
571 986 5.777802 AGATACATCCATTTCAGCGACTAG 58.222 41.667 0.00 0.00 0.00 2.57
572 987 3.895232 ACATCCATTTCAGCGACTAGT 57.105 42.857 0.00 0.00 0.00 2.57
573 988 6.490381 AGATACATCCATTTCAGCGACTAGTA 59.510 38.462 0.00 0.00 0.00 1.82
574 989 5.339008 ACATCCATTTCAGCGACTAGTAA 57.661 39.130 0.00 0.00 0.00 2.24
575 990 5.918608 ACATCCATTTCAGCGACTAGTAAT 58.081 37.500 0.00 0.00 0.00 1.89
576 991 6.349300 ACATCCATTTCAGCGACTAGTAATT 58.651 36.000 0.00 0.00 0.00 1.40
577 992 6.823689 ACATCCATTTCAGCGACTAGTAATTT 59.176 34.615 0.00 0.00 0.00 1.82
578 993 7.985184 ACATCCATTTCAGCGACTAGTAATTTA 59.015 33.333 0.00 0.00 0.00 1.40
579 994 8.491152 CATCCATTTCAGCGACTAGTAATTTAG 58.509 37.037 0.00 0.00 0.00 1.85
580 995 7.778083 TCCATTTCAGCGACTAGTAATTTAGA 58.222 34.615 0.00 0.00 0.00 2.10
581 996 8.255206 TCCATTTCAGCGACTAGTAATTTAGAA 58.745 33.333 0.00 0.00 0.00 2.10
582 997 8.328864 CCATTTCAGCGACTAGTAATTTAGAAC 58.671 37.037 0.00 0.00 0.00 3.01
583 998 7.502177 TTTCAGCGACTAGTAATTTAGAACG 57.498 36.000 0.00 0.00 0.00 3.95
584 999 5.575957 TCAGCGACTAGTAATTTAGAACGG 58.424 41.667 0.00 0.00 0.00 4.44
585 1000 5.355071 TCAGCGACTAGTAATTTAGAACGGA 59.645 40.000 0.00 0.00 0.00 4.69
586 1001 5.681982 CAGCGACTAGTAATTTAGAACGGAG 59.318 44.000 0.00 0.00 0.00 4.63
587 1002 4.974888 GCGACTAGTAATTTAGAACGGAGG 59.025 45.833 0.00 0.00 0.00 4.30
588 1003 5.517904 CGACTAGTAATTTAGAACGGAGGG 58.482 45.833 0.00 0.00 0.00 4.30
589 1004 5.297776 CGACTAGTAATTTAGAACGGAGGGA 59.702 44.000 0.00 0.00 0.00 4.20
599 1014 9.543231 AATTTAGAACGGAGGGAGTATCATATA 57.457 33.333 0.00 0.00 36.25 0.86
616 1031 9.712305 GTATCATATAGCTAAACAAGTGGACAT 57.288 33.333 0.00 0.00 0.00 3.06
625 1040 1.271926 ACAAGTGGACATAAGTGGGGC 60.272 52.381 0.00 0.00 0.00 5.80
626 1041 0.331616 AAGTGGACATAAGTGGGGCC 59.668 55.000 0.00 0.00 0.00 5.80
627 1042 0.844661 AGTGGACATAAGTGGGGCCA 60.845 55.000 4.39 0.00 0.00 5.36
628 1043 0.394352 GTGGACATAAGTGGGGCCAG 60.394 60.000 4.39 0.00 0.00 4.85
629 1044 0.844661 TGGACATAAGTGGGGCCAGT 60.845 55.000 4.39 0.00 0.00 4.00
630 1045 1.209621 GGACATAAGTGGGGCCAGTA 58.790 55.000 4.39 0.00 0.00 2.74
631 1046 1.134189 GGACATAAGTGGGGCCAGTAC 60.134 57.143 4.39 0.63 0.00 2.73
632 1047 0.539986 ACATAAGTGGGGCCAGTACG 59.460 55.000 4.39 0.00 0.00 3.67
633 1048 0.539986 CATAAGTGGGGCCAGTACGT 59.460 55.000 4.39 2.05 0.00 3.57
634 1049 1.758280 CATAAGTGGGGCCAGTACGTA 59.242 52.381 4.39 4.42 0.00 3.57
656 1071 2.641197 CTACAACAAGTGGCCCCAC 58.359 57.895 9.42 9.42 46.50 4.61
681 1096 6.166279 CAGTATGTATGGCCATAACTGGTAG 58.834 44.000 31.56 16.92 45.10 3.18
682 1097 4.640771 ATGTATGGCCATAACTGGTAGG 57.359 45.455 27.04 0.00 45.10 3.18
683 1098 3.389866 TGTATGGCCATAACTGGTAGGT 58.610 45.455 27.04 0.00 45.10 3.08
684 1099 3.135712 TGTATGGCCATAACTGGTAGGTG 59.864 47.826 27.04 0.00 45.10 4.00
760 1175 4.375406 GCCTAGGACTGGCCAGTA 57.625 61.111 37.87 21.94 44.32 2.74
831 1252 4.287766 AGCCGGTTCTTCTTAAGTTCAT 57.712 40.909 1.90 0.00 0.00 2.57
832 1253 5.416271 AGCCGGTTCTTCTTAAGTTCATA 57.584 39.130 1.90 0.00 0.00 2.15
833 1254 5.176592 AGCCGGTTCTTCTTAAGTTCATAC 58.823 41.667 1.90 0.00 0.00 2.39
834 1255 5.046520 AGCCGGTTCTTCTTAAGTTCATACT 60.047 40.000 1.90 0.00 35.68 2.12
835 1256 5.291371 GCCGGTTCTTCTTAAGTTCATACTC 59.709 44.000 1.90 0.00 31.99 2.59
836 1257 5.811100 CCGGTTCTTCTTAAGTTCATACTCC 59.189 44.000 1.63 0.00 31.99 3.85
837 1258 5.811100 CGGTTCTTCTTAAGTTCATACTCCC 59.189 44.000 1.63 0.00 31.99 4.30
838 1259 6.351117 CGGTTCTTCTTAAGTTCATACTCCCT 60.351 42.308 1.63 0.00 31.99 4.20
839 1260 7.042950 GGTTCTTCTTAAGTTCATACTCCCTC 58.957 42.308 1.63 0.00 31.99 4.30
840 1261 6.793505 TCTTCTTAAGTTCATACTCCCTCC 57.206 41.667 1.63 0.00 31.99 4.30
841 1262 5.360144 TCTTCTTAAGTTCATACTCCCTCCG 59.640 44.000 1.63 0.00 31.99 4.63
842 1263 4.607239 TCTTAAGTTCATACTCCCTCCGT 58.393 43.478 1.63 0.00 31.99 4.69
843 1264 4.643784 TCTTAAGTTCATACTCCCTCCGTC 59.356 45.833 1.63 0.00 31.99 4.79
844 1265 1.777941 AGTTCATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
845 1266 0.384669 GTTCATACTCCCTCCGTCCG 59.615 60.000 0.00 0.00 0.00 4.79
846 1267 0.256752 TTCATACTCCCTCCGTCCGA 59.743 55.000 0.00 0.00 0.00 4.55
847 1268 0.256752 TCATACTCCCTCCGTCCGAA 59.743 55.000 0.00 0.00 0.00 4.30
848 1269 1.108776 CATACTCCCTCCGTCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
849 1270 1.479323 CATACTCCCTCCGTCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
850 1271 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
851 1272 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
852 1273 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
853 1274 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
854 1275 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
855 1276 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
856 1277 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
857 1278 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
858 1279 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
859 1280 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
860 1281 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
861 1282 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
862 1283 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
863 1284 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
864 1285 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
865 1286 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
866 1287 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
867 1288 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
868 1289 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
869 1290 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
877 1298 9.439500 ACTTGTCATCAAAATGGATAAAAATGG 57.561 29.630 0.00 0.00 33.42 3.16
878 1299 9.656040 CTTGTCATCAAAATGGATAAAAATGGA 57.344 29.630 0.00 0.00 33.42 3.41
880 1301 9.602568 TGTCATCAAAATGGATAAAAATGGATG 57.397 29.630 0.00 0.00 33.42 3.51
881 1302 9.603921 GTCATCAAAATGGATAAAAATGGATGT 57.396 29.630 0.00 0.00 33.42 3.06
937 1358 9.918630 CTCCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
944 1365 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
945 1366 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
946 1367 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
947 1368 7.339212 TCATTTTGATGACAAGTATTTCCGGAT 59.661 33.333 4.15 0.00 37.32 4.18
948 1369 6.435430 TTTGATGACAAGTATTTCCGGATG 57.565 37.500 4.15 0.97 37.32 3.51
949 1370 4.450976 TGATGACAAGTATTTCCGGATGG 58.549 43.478 4.15 0.00 0.00 3.51
950 1371 4.163268 TGATGACAAGTATTTCCGGATGGA 59.837 41.667 4.15 0.00 44.61 3.41
951 1372 8.543352 TTTGATGACAAGTATTTCCGGATGGAG 61.543 40.741 4.15 0.00 40.39 3.86
975 1396 5.768164 GGGAGTACTCACTTTTTCCATTTGA 59.232 40.000 23.91 0.00 34.21 2.69
1054 1475 7.011857 CAGAAGGACAAGAGTATAAATTGGCTC 59.988 40.741 0.00 0.00 32.35 4.70
1115 1536 0.114364 TACACCTCTCCTGTGCTCCA 59.886 55.000 0.00 0.00 37.22 3.86
1332 1767 9.095065 GAAATATCGCCCGTTACATATTTCTAT 57.905 33.333 16.77 0.00 41.21 1.98
1342 1777 9.973246 CCGTTACATATTTCTATATGATGTTGC 57.027 33.333 11.08 0.00 44.22 4.17
1389 1824 1.665679 AGTTGAACAACAGAGTGCGTG 59.334 47.619 17.85 0.00 43.47 5.34
1441 1876 4.353383 GGTACCTCCCCATCTATTGTTC 57.647 50.000 4.06 0.00 0.00 3.18
1447 1882 6.399013 ACCTCCCCATCTATTGTTCCTATAA 58.601 40.000 0.00 0.00 0.00 0.98
1448 1883 7.031917 ACCTCCCCATCTATTGTTCCTATAAT 58.968 38.462 0.00 0.00 0.00 1.28
1449 1884 7.182930 ACCTCCCCATCTATTGTTCCTATAATC 59.817 40.741 0.00 0.00 0.00 1.75
1453 1888 7.995488 CCCCATCTATTGTTCCTATAATCATCC 59.005 40.741 0.00 0.00 0.00 3.51
1498 1933 9.196552 GTTTAATTTCTGCATAATATCCAAGCC 57.803 33.333 0.00 0.00 0.00 4.35
1503 1938 2.171003 GCATAATATCCAAGCCCCACC 58.829 52.381 0.00 0.00 0.00 4.61
1508 1943 0.343372 TATCCAAGCCCCACCTCTCT 59.657 55.000 0.00 0.00 0.00 3.10
1548 1987 4.383010 CCATCTGGTTAGTGTATGCAGTGA 60.383 45.833 0.79 0.00 0.00 3.41
1563 2002 5.239359 TGCAGTGATTCTACAAATGATGC 57.761 39.130 0.00 0.00 0.00 3.91
1567 2006 5.065090 CAGTGATTCTACAAATGATGCGGAA 59.935 40.000 0.00 0.00 0.00 4.30
1570 2009 5.647658 TGATTCTACAAATGATGCGGAAACT 59.352 36.000 0.00 0.00 0.00 2.66
1574 2013 4.946784 ACAAATGATGCGGAAACTAGAC 57.053 40.909 0.00 0.00 0.00 2.59
1590 2029 7.764443 GGAAACTAGACAATCAGCACATAACTA 59.236 37.037 0.00 0.00 0.00 2.24
1599 2038 9.066892 ACAATCAGCACATAACTAAAAGAAAGA 57.933 29.630 0.00 0.00 0.00 2.52
1678 2117 4.201523 TGGAGGTCCAGCGTAACA 57.798 55.556 0.00 0.00 42.01 2.41
1685 2124 2.027192 AGGTCCAGCGTAACACATCAAT 60.027 45.455 0.00 0.00 0.00 2.57
1705 2144 5.880332 TCAATATCAAACTGCAGTACCCTTC 59.120 40.000 22.01 0.00 0.00 3.46
1721 2160 1.683917 CCTTCAGTGATACTCCCTCCG 59.316 57.143 0.00 0.00 0.00 4.63
1742 2181 8.122952 CCTCCGTTCACAAATATAAGATGTTTC 58.877 37.037 0.00 0.00 0.00 2.78
1767 2206 6.018262 CGGATATTTCAACGTGAACCACATAT 60.018 38.462 0.00 0.00 35.89 1.78
1795 2234 6.153680 ACTTAAATGAGTGAACAAACCCACAA 59.846 34.615 0.00 0.00 35.84 3.33
1796 2235 5.413309 AAATGAGTGAACAAACCCACAAA 57.587 34.783 0.00 0.00 35.84 2.83
1861 2300 3.567478 ATAGTTGTGAATGGAGGGAGC 57.433 47.619 0.00 0.00 0.00 4.70
1915 2354 5.893687 TGTAATAATCATGCAGCAAACTGG 58.106 37.500 0.00 0.00 44.63 4.00
1940 2379 5.053145 AGAATTAGAAGCACGGCATAGAAG 58.947 41.667 0.00 0.00 0.00 2.85
1953 2392 7.437267 GCACGGCATAGAAGTTTAGATACTAAA 59.563 37.037 0.00 0.00 0.00 1.85
1999 2438 5.401531 TTTAGGTAGAAGCATCACGTCTT 57.598 39.130 0.00 0.00 38.20 3.01
2021 2460 2.295909 GTGTGCAGCCTGAAATTGGTAA 59.704 45.455 0.00 0.00 0.00 2.85
2042 2481 4.859304 AGATGCTTCAAATCTTGTGCAA 57.141 36.364 2.07 0.00 41.39 4.08
2049 2488 7.380536 TGCTTCAAATCTTGTGCAATATTTCT 58.619 30.769 0.00 0.00 37.88 2.52
2050 2489 8.522003 TGCTTCAAATCTTGTGCAATATTTCTA 58.478 29.630 0.00 0.00 37.88 2.10
2102 2542 2.159627 CACTCCACAAAATAGGCGTGTC 59.840 50.000 0.00 0.00 36.22 3.67
2121 2561 7.060864 GGCGTGTCGAATAAATTCTATAGAGAC 59.939 40.741 2.02 5.24 34.69 3.36
2178 2618 0.250901 GGCTTTGCTTGGAGGACTCA 60.251 55.000 1.32 0.00 0.00 3.41
2197 2641 4.777896 ACTCATAACCTCTACAGGAAGCAA 59.222 41.667 0.00 0.00 43.65 3.91
2217 2661 3.788227 AGGACCTAAAGCACATGTCAA 57.212 42.857 0.00 0.00 0.00 3.18
2384 2828 6.628919 AGCCATATAAACGGGAAATACAAC 57.371 37.500 0.00 0.00 0.00 3.32
2577 3023 4.445019 GCCTTATAAACTGGAAGAGAGGGG 60.445 50.000 0.00 0.00 37.43 4.79
2602 3048 9.281371 GGGTATTAATCTTGGTCCATACTAAAC 57.719 37.037 0.00 0.00 0.00 2.01
2617 3063 8.141909 TCCATACTAAACTAATTCGACATCAGG 58.858 37.037 0.00 0.00 0.00 3.86
2626 3072 1.194218 TCGACATCAGGCATCCTTCA 58.806 50.000 0.00 0.00 0.00 3.02
2627 3073 1.764723 TCGACATCAGGCATCCTTCAT 59.235 47.619 0.00 0.00 0.00 2.57
2786 3530 6.882610 ACACATGATTTAGCTCTTTTGTGA 57.117 33.333 16.49 0.00 0.00 3.58
2807 3551 7.939782 TGTGAAAACATGACAATCACACTATT 58.060 30.769 17.74 0.00 43.79 1.73
2906 3651 5.125578 TCTGCACTACTGTGACGATCTAATT 59.874 40.000 0.00 0.00 46.55 1.40
2910 3655 6.020281 GCACTACTGTGACGATCTAATTTCAG 60.020 42.308 0.00 0.00 46.55 3.02
2916 3661 6.108687 TGTGACGATCTAATTTCAGAAGCAT 58.891 36.000 0.00 0.00 0.00 3.79
3027 3774 8.617290 TGGAACATCTTTACTTTTTAGGAGTC 57.383 34.615 0.00 0.00 0.00 3.36
3028 3775 7.386848 TGGAACATCTTTACTTTTTAGGAGTCG 59.613 37.037 0.00 0.00 0.00 4.18
3029 3776 7.387122 GGAACATCTTTACTTTTTAGGAGTCGT 59.613 37.037 0.00 0.00 0.00 4.34
3157 3906 9.906660 CTACTAATGAGTATTTGTCATCCTCTC 57.093 37.037 0.00 0.00 37.53 3.20
3518 4271 9.554395 TGGTTAATATGATACAATCACACGAAT 57.446 29.630 0.00 0.00 43.01 3.34
3532 4285 4.080582 TCACACGAATCATTAAGGGTCCAT 60.081 41.667 0.00 0.00 0.00 3.41
3580 4333 2.894763 TGTTTTTGCAGCAAGCTCAT 57.105 40.000 8.12 0.00 45.94 2.90
3598 4351 5.246656 AGCTCATATGAGAGAAAGGATGGAG 59.753 44.000 32.38 5.78 44.74 3.86
3624 4377 6.360370 ACTATTGGAGCAAGTAAGAACAGA 57.640 37.500 0.00 0.00 0.00 3.41
3650 4403 2.165357 AGAGGCAAATGAAATCCCCC 57.835 50.000 0.00 0.00 0.00 5.40
3967 4720 5.011635 ACAAACAAGGAGGTTTTGTTCAGTT 59.988 36.000 4.09 0.00 45.28 3.16
4095 4848 6.108687 GGGGCTTTAGAAAATTTGGAATCAG 58.891 40.000 0.00 0.00 0.00 2.90
4277 5030 7.587037 TCATTTTTGTGAGGAGTTGAAAGAT 57.413 32.000 0.00 0.00 0.00 2.40
4496 5254 9.120538 GCTACAACCTTGAATATTCTTATTCCA 57.879 33.333 16.24 0.00 42.02 3.53
4642 5651 6.405842 CCCTTCCCTGATTTTGTAATAGTTGC 60.406 42.308 0.00 0.00 0.00 4.17
4643 5652 6.405842 CCTTCCCTGATTTTGTAATAGTTGCC 60.406 42.308 0.00 0.00 0.00 4.52
4716 5725 8.633075 TTTTTATCAAAGAGCAAAGTGACAAG 57.367 30.769 0.00 0.00 0.00 3.16
4720 5729 6.545504 TCAAAGAGCAAAGTGACAAGTATC 57.454 37.500 0.00 0.00 0.00 2.24
4906 5920 7.083875 TGCTAATACATTTGAAGTGCCTTAC 57.916 36.000 0.00 0.00 0.00 2.34
4937 5951 5.976458 ACAACAATGGTTTCACTTCACAAT 58.024 33.333 0.00 0.00 34.21 2.71
4999 6013 9.973246 GTAATAAATGTTGTAGATCACACACTG 57.027 33.333 0.00 0.00 36.69 3.66
5162 6192 5.654901 AGGACTCTGTCATGGATCTACTA 57.345 43.478 0.00 0.00 33.68 1.82
5341 6384 5.132648 AGGTGGGATGAAGATGCAGTAAATA 59.867 40.000 0.00 0.00 0.00 1.40
5454 6497 6.228258 TCGTGTGGTTTATCTAAAAGAAGCT 58.772 36.000 0.00 0.00 0.00 3.74
5574 6619 1.003839 AGCGTCGCCAAGATGGAAA 60.004 52.632 14.86 0.00 40.96 3.13
5751 6835 6.313905 CCGAGTGATTATATTGTAATGCCTCC 59.686 42.308 0.00 0.00 0.00 4.30
5753 6837 8.251026 CGAGTGATTATATTGTAATGCCTCCTA 58.749 37.037 0.00 0.00 0.00 2.94
5846 6937 4.324563 CCTTGGGTGAGAGTGTTGGATATT 60.325 45.833 0.00 0.00 0.00 1.28
5892 6989 9.903682 CTTAAATACATGGCAATCTCATAAAGG 57.096 33.333 0.00 0.00 0.00 3.11
5986 7083 1.413812 CATGCTAAAATTCTGGCCCCC 59.586 52.381 0.00 0.00 0.00 5.40
6181 7600 1.202592 TGAGGCTTTGTACAACGCAGA 60.203 47.619 30.76 15.66 37.31 4.26
6235 7660 6.207417 GCTATATGATGCACCTGTTTTGGTAT 59.793 38.462 0.00 0.00 38.45 2.73
6281 7707 8.974060 AATTACTCAAACCACTCAAGAAACTA 57.026 30.769 0.00 0.00 0.00 2.24
6373 7823 2.248280 TAACATGTCCGTGTGCTTGT 57.752 45.000 0.00 0.00 31.49 3.16
6424 7875 5.245531 TGAACCATTGTCATTAGTCCTCAC 58.754 41.667 0.00 0.00 0.00 3.51
6443 7894 5.163258 CCTCACTGTCAATTTAGGGAGCTAT 60.163 44.000 7.54 0.00 41.94 2.97
6450 7916 5.997746 GTCAATTTAGGGAGCTATATGCACA 59.002 40.000 0.00 0.00 45.94 4.57
6462 7928 9.014297 GGAGCTATATGCACATTAATTTAGGTT 57.986 33.333 0.00 0.00 45.94 3.50
6605 8080 2.888414 TGTCGGTGACTCAACTACATGA 59.112 45.455 0.00 0.00 33.15 3.07
6897 10414 5.255687 ACTCATAATTGTCACATCAAGGCA 58.744 37.500 0.00 0.00 0.00 4.75
6931 10448 2.359900 GAATTCACATCCGGCTTCTGT 58.640 47.619 0.00 0.00 0.00 3.41
6934 10451 0.396435 TCACATCCGGCTTCTGTGTT 59.604 50.000 19.06 0.00 40.81 3.32
6944 10461 4.281182 CCGGCTTCTGTGTTACTAGGATAT 59.719 45.833 0.00 0.00 0.00 1.63
6949 10466 7.201884 GGCTTCTGTGTTACTAGGATATACACA 60.202 40.741 10.09 10.09 44.70 3.72
6957 10474 7.343574 TGTTACTAGGATATACACAGCCAGAAA 59.656 37.037 0.00 0.00 0.00 2.52
6972 10489 2.514902 CAGAAAAACCACACACACACG 58.485 47.619 0.00 0.00 0.00 4.49
6980 10497 1.083806 CACACACACACGCACACTCT 61.084 55.000 0.00 0.00 0.00 3.24
6981 10498 0.458260 ACACACACACGCACACTCTA 59.542 50.000 0.00 0.00 0.00 2.43
6983 10500 1.930503 CACACACACGCACACTCTAAA 59.069 47.619 0.00 0.00 0.00 1.85
6985 10502 2.607635 ACACACACGCACACTCTAAAAG 59.392 45.455 0.00 0.00 0.00 2.27
6992 10532 3.648179 GCACACTCTAAAAGAGATGCG 57.352 47.619 10.80 1.79 45.07 4.73
7039 10579 6.723977 AGTTATAAAGAACCAAGGAAATGCCA 59.276 34.615 0.00 0.00 40.02 4.92
7040 10580 3.751479 AAAGAACCAAGGAAATGCCAC 57.249 42.857 0.00 0.00 40.02 5.01
7042 10582 2.519013 AGAACCAAGGAAATGCCACTC 58.481 47.619 0.00 0.00 40.02 3.51
7055 10595 2.491621 CACTCGCGAGATGGCAGA 59.508 61.111 40.58 0.00 40.84 4.26
7095 10637 2.884639 GCCGCCAACCATATAGAAACAT 59.115 45.455 0.00 0.00 0.00 2.71
7333 10878 4.100498 TCATCGGTAAGTATTGGAACCTCC 59.900 45.833 0.00 0.00 36.96 4.30
7706 11262 2.959707 ACCTAGCCTATCCGAACTTGAG 59.040 50.000 0.00 0.00 0.00 3.02
7823 11379 1.189524 CCCGGGTAAGGGCGATGATA 61.190 60.000 14.18 0.00 45.72 2.15
7956 11513 9.231297 GGCCTATGTAGCTTGATTAATTAATGA 57.769 33.333 15.39 4.23 0.00 2.57
7978 11535 7.639113 TGATAGCCATAAAAACACTAAAGGG 57.361 36.000 0.00 0.00 0.00 3.95
7998 11555 2.098614 GACATGAGGAGAGACTGAGCA 58.901 52.381 0.00 0.00 0.00 4.26
8038 11630 2.647846 AATTTCATCCAGGGGCCTTT 57.352 45.000 0.84 0.00 0.00 3.11
8216 11863 7.366513 TGATGACGCATGTGAAAAGATAAAAA 58.633 30.769 14.43 0.00 0.00 1.94
8369 12016 7.436933 TGCATACACTAATTCAGAGATACTGG 58.563 38.462 0.00 0.00 45.76 4.00
8455 12102 4.152647 AGGGATGCATACGTAGAAGATGA 58.847 43.478 1.24 0.00 0.00 2.92
8703 12351 1.596203 CGGCCATGCACTCATCGAT 60.596 57.895 2.24 0.00 0.00 3.59
8722 12370 3.975670 CGATCATGCTAACCTAGACGTTC 59.024 47.826 0.00 0.00 0.00 3.95
8910 12559 9.330063 CTCAATTGAATACTAGCTTCCACAATA 57.670 33.333 9.88 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.277174 CCACTTGCTTACCAACATGTACAA 59.723 41.667 0.00 0.00 0.00 2.41
13 14 3.627577 CCCATGTATGTCCACTTGCTTAC 59.372 47.826 0.00 0.00 0.00 2.34
19 20 1.298953 AGCCCCATGTATGTCCACTT 58.701 50.000 0.00 0.00 0.00 3.16
59 60 9.814899 TGTGGTAAGCAATCCAAATTATTTATG 57.185 29.630 0.00 0.00 35.38 1.90
61 62 9.814899 CATGTGGTAAGCAATCCAAATTATTTA 57.185 29.630 0.00 0.00 35.38 1.40
62 63 8.320617 ACATGTGGTAAGCAATCCAAATTATTT 58.679 29.630 0.00 0.00 35.38 1.40
63 64 7.765360 CACATGTGGTAAGCAATCCAAATTATT 59.235 33.333 18.51 0.00 35.38 1.40
64 65 7.093377 ACACATGTGGTAAGCAATCCAAATTAT 60.093 33.333 28.64 0.00 35.38 1.28
65 66 6.210385 ACACATGTGGTAAGCAATCCAAATTA 59.790 34.615 28.64 0.00 35.38 1.40
66 67 5.011943 ACACATGTGGTAAGCAATCCAAATT 59.988 36.000 28.64 0.00 35.38 1.82
67 68 4.527816 ACACATGTGGTAAGCAATCCAAAT 59.472 37.500 28.64 0.00 35.38 2.32
68 69 3.894427 ACACATGTGGTAAGCAATCCAAA 59.106 39.130 28.64 0.00 35.38 3.28
69 70 3.495331 ACACATGTGGTAAGCAATCCAA 58.505 40.909 28.64 0.00 35.38 3.53
70 71 3.081061 GACACATGTGGTAAGCAATCCA 58.919 45.455 28.64 0.00 34.19 3.41
71 72 3.081061 TGACACATGTGGTAAGCAATCC 58.919 45.455 28.64 6.08 34.19 3.01
72 73 3.424829 CGTGACACATGTGGTAAGCAATC 60.425 47.826 28.64 14.99 34.19 2.67
73 74 2.483877 CGTGACACATGTGGTAAGCAAT 59.516 45.455 28.64 5.90 34.19 3.56
74 75 1.870402 CGTGACACATGTGGTAAGCAA 59.130 47.619 28.64 4.27 34.19 3.91
75 76 1.202592 ACGTGACACATGTGGTAAGCA 60.203 47.619 28.64 15.24 31.87 3.91
76 77 1.194547 CACGTGACACATGTGGTAAGC 59.805 52.381 28.64 13.03 44.71 3.09
83 84 0.320374 CCCTACCACGTGACACATGT 59.680 55.000 19.30 7.66 33.47 3.21
84 85 0.391130 CCCCTACCACGTGACACATG 60.391 60.000 19.30 0.00 0.00 3.21
85 86 1.980052 CCCCTACCACGTGACACAT 59.020 57.895 19.30 0.00 0.00 3.21
86 87 2.874664 GCCCCTACCACGTGACACA 61.875 63.158 19.30 0.00 0.00 3.72
87 88 1.252904 TAGCCCCTACCACGTGACAC 61.253 60.000 19.30 0.00 0.00 3.67
88 89 0.324923 ATAGCCCCTACCACGTGACA 60.325 55.000 19.30 2.69 0.00 3.58
89 90 1.612463 CTATAGCCCCTACCACGTGAC 59.388 57.143 19.30 0.00 0.00 3.67
90 91 1.216175 ACTATAGCCCCTACCACGTGA 59.784 52.381 19.30 0.00 0.00 4.35
91 92 1.700955 ACTATAGCCCCTACCACGTG 58.299 55.000 9.08 9.08 0.00 4.49
92 93 3.181425 ACATACTATAGCCCCTACCACGT 60.181 47.826 0.00 0.00 0.00 4.49
93 94 3.428532 ACATACTATAGCCCCTACCACG 58.571 50.000 0.00 0.00 0.00 4.94
94 95 5.363005 CCATACATACTATAGCCCCTACCAC 59.637 48.000 0.00 0.00 0.00 4.16
95 96 5.525484 CCATACATACTATAGCCCCTACCA 58.475 45.833 0.00 0.00 0.00 3.25
96 97 4.344390 GCCATACATACTATAGCCCCTACC 59.656 50.000 0.00 0.00 0.00 3.18
97 98 5.209659 AGCCATACATACTATAGCCCCTAC 58.790 45.833 0.00 0.00 0.00 3.18
98 99 5.483174 AGCCATACATACTATAGCCCCTA 57.517 43.478 0.00 0.00 0.00 3.53
99 100 4.354208 AGCCATACATACTATAGCCCCT 57.646 45.455 0.00 0.00 0.00 4.79
100 101 4.960469 TGTAGCCATACATACTATAGCCCC 59.040 45.833 0.00 0.00 36.98 5.80
101 102 5.657302 ACTGTAGCCATACATACTATAGCCC 59.343 44.000 0.00 0.00 41.05 5.19
102 103 6.777213 ACTGTAGCCATACATACTATAGCC 57.223 41.667 0.00 0.00 41.05 3.93
103 104 8.958506 ACTTACTGTAGCCATACATACTATAGC 58.041 37.037 0.00 0.00 41.05 2.97
105 106 9.159364 CGACTTACTGTAGCCATACATACTATA 57.841 37.037 0.00 0.00 41.05 1.31
106 107 7.361885 GCGACTTACTGTAGCCATACATACTAT 60.362 40.741 0.00 0.00 41.05 2.12
107 108 6.072838 GCGACTTACTGTAGCCATACATACTA 60.073 42.308 0.00 0.00 41.05 1.82
108 109 5.278364 GCGACTTACTGTAGCCATACATACT 60.278 44.000 0.00 0.00 41.05 2.12
139 140 2.103601 ACCGGTTATAGCCATGTGTACC 59.896 50.000 0.00 0.00 0.00 3.34
151 152 7.507733 TTTTTCAAAGTGCTAACCGGTTATA 57.492 32.000 26.70 16.14 0.00 0.98
157 158 4.084589 GGCAATTTTTCAAAGTGCTAACCG 60.085 41.667 18.04 0.00 33.67 4.44
244 245 9.927668 TGTCGCTCAAATGAATATATCTATCAA 57.072 29.630 0.00 0.00 0.00 2.57
254 301 8.773645 CCATATTACTTGTCGCTCAAATGAATA 58.226 33.333 0.00 0.00 35.48 1.75
257 304 6.345298 TCCATATTACTTGTCGCTCAAATGA 58.655 36.000 0.00 0.00 35.48 2.57
259 306 6.146184 CGATCCATATTACTTGTCGCTCAAAT 59.854 38.462 0.00 0.00 35.48 2.32
266 313 4.923871 CCTTCCGATCCATATTACTTGTCG 59.076 45.833 0.00 0.00 0.00 4.35
300 347 3.702548 ACCGCTGTCATTATGTGTACCTA 59.297 43.478 0.00 0.00 0.00 3.08
306 353 5.578336 CCATATAGACCGCTGTCATTATGTG 59.422 44.000 19.47 13.71 44.33 3.21
313 360 2.557056 GCTACCATATAGACCGCTGTCA 59.443 50.000 11.07 0.00 44.33 3.58
319 366 7.010183 CCATTAAATTCGCTACCATATAGACCG 59.990 40.741 0.00 0.00 0.00 4.79
323 370 7.110155 ACCCCATTAAATTCGCTACCATATAG 58.890 38.462 0.00 0.00 0.00 1.31
412 459 6.205464 TCATCTCCAACAAAGTCATGAAGTTC 59.795 38.462 0.00 0.00 0.00 3.01
416 463 6.298361 TCTTCATCTCCAACAAAGTCATGAA 58.702 36.000 0.00 0.00 0.00 2.57
450 497 7.928307 ATCTTCATCTCTCCATTTCGAAAAA 57.072 32.000 15.66 2.87 0.00 1.94
451 498 7.928307 AATCTTCATCTCTCCATTTCGAAAA 57.072 32.000 15.66 0.00 0.00 2.29
452 499 7.066284 GGAAATCTTCATCTCTCCATTTCGAAA 59.934 37.037 13.91 13.91 33.07 3.46
453 500 6.540189 GGAAATCTTCATCTCTCCATTTCGAA 59.460 38.462 0.00 0.00 33.07 3.71
454 501 6.051717 GGAAATCTTCATCTCTCCATTTCGA 58.948 40.000 0.00 0.00 33.07 3.71
455 502 5.819379 TGGAAATCTTCATCTCTCCATTTCG 59.181 40.000 0.00 0.00 33.07 3.46
456 503 6.600822 TGTGGAAATCTTCATCTCTCCATTTC 59.399 38.462 0.00 0.00 35.52 2.17
457 504 6.487828 TGTGGAAATCTTCATCTCTCCATTT 58.512 36.000 0.00 0.00 35.52 2.32
458 505 6.070951 TGTGGAAATCTTCATCTCTCCATT 57.929 37.500 0.00 0.00 35.52 3.16
459 506 5.705397 TGTGGAAATCTTCATCTCTCCAT 57.295 39.130 0.00 0.00 35.52 3.41
461 508 6.376581 ACATTTGTGGAAATCTTCATCTCTCC 59.623 38.462 0.00 0.00 28.65 3.71
462 509 7.388460 ACATTTGTGGAAATCTTCATCTCTC 57.612 36.000 0.00 0.00 28.65 3.20
463 510 8.105829 AGTACATTTGTGGAAATCTTCATCTCT 58.894 33.333 0.00 0.00 28.65 3.10
464 511 8.273780 AGTACATTTGTGGAAATCTTCATCTC 57.726 34.615 0.00 0.00 28.65 2.75
465 512 7.337942 GGAGTACATTTGTGGAAATCTTCATCT 59.662 37.037 0.00 0.00 28.65 2.90
466 513 7.415653 GGGAGTACATTTGTGGAAATCTTCATC 60.416 40.741 0.00 0.00 28.65 2.92
467 514 6.378280 GGGAGTACATTTGTGGAAATCTTCAT 59.622 38.462 0.00 0.00 28.65 2.57
468 515 5.710099 GGGAGTACATTTGTGGAAATCTTCA 59.290 40.000 0.00 0.00 28.65 3.02
469 516 5.946377 AGGGAGTACATTTGTGGAAATCTTC 59.054 40.000 0.00 0.00 28.65 2.87
470 517 5.892348 AGGGAGTACATTTGTGGAAATCTT 58.108 37.500 0.00 0.00 28.65 2.40
473 520 4.600062 GGAGGGAGTACATTTGTGGAAAT 58.400 43.478 0.00 0.00 31.52 2.17
496 911 3.430895 TCTTGCGACAAGTAATTCGGAAC 59.569 43.478 15.83 0.00 40.13 3.62
497 912 3.655486 TCTTGCGACAAGTAATTCGGAA 58.345 40.909 15.83 0.00 42.34 4.30
498 913 3.306917 TCTTGCGACAAGTAATTCGGA 57.693 42.857 15.83 0.00 35.73 4.55
499 914 4.334443 CATTCTTGCGACAAGTAATTCGG 58.666 43.478 15.83 4.32 35.73 4.30
500 915 4.092821 TCCATTCTTGCGACAAGTAATTCG 59.907 41.667 15.83 0.00 38.31 3.34
501 916 5.545658 TCCATTCTTGCGACAAGTAATTC 57.454 39.130 15.83 0.00 0.00 2.17
502 917 5.415701 ACATCCATTCTTGCGACAAGTAATT 59.584 36.000 15.83 0.00 0.00 1.40
503 918 4.943705 ACATCCATTCTTGCGACAAGTAAT 59.056 37.500 15.83 12.13 0.00 1.89
504 919 4.323417 ACATCCATTCTTGCGACAAGTAA 58.677 39.130 15.83 10.88 0.00 2.24
505 920 3.937814 ACATCCATTCTTGCGACAAGTA 58.062 40.909 15.83 9.45 0.00 2.24
506 921 2.783135 ACATCCATTCTTGCGACAAGT 58.217 42.857 15.83 0.02 0.00 3.16
507 922 4.813161 AGATACATCCATTCTTGCGACAAG 59.187 41.667 11.78 11.78 0.00 3.16
508 923 4.769688 AGATACATCCATTCTTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
509 924 4.406648 AGATACATCCATTCTTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
510 925 5.773575 TCTAGATACATCCATTCTTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
511 926 6.015095 ACATCTAGATACATCCATTCTTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
512 927 6.162079 ACATCTAGATACATCCATTCTTGCG 58.838 40.000 4.54 0.00 0.00 4.85
513 928 9.664332 AATACATCTAGATACATCCATTCTTGC 57.336 33.333 4.54 0.00 0.00 4.01
540 955 9.208022 CGCTGAAATGGATGTATCTAGAATTAA 57.792 33.333 0.00 0.00 0.00 1.40
541 956 8.585018 TCGCTGAAATGGATGTATCTAGAATTA 58.415 33.333 0.00 0.00 0.00 1.40
542 957 7.386299 GTCGCTGAAATGGATGTATCTAGAATT 59.614 37.037 0.00 0.00 0.00 2.17
543 958 6.870965 GTCGCTGAAATGGATGTATCTAGAAT 59.129 38.462 0.00 0.00 0.00 2.40
544 959 6.040955 AGTCGCTGAAATGGATGTATCTAGAA 59.959 38.462 0.00 0.00 0.00 2.10
545 960 5.536538 AGTCGCTGAAATGGATGTATCTAGA 59.463 40.000 0.00 0.00 0.00 2.43
546 961 5.777802 AGTCGCTGAAATGGATGTATCTAG 58.222 41.667 0.00 0.00 0.00 2.43
547 962 5.791336 AGTCGCTGAAATGGATGTATCTA 57.209 39.130 0.00 0.00 0.00 1.98
548 963 4.679373 AGTCGCTGAAATGGATGTATCT 57.321 40.909 0.00 0.00 0.00 1.98
549 964 5.533482 ACTAGTCGCTGAAATGGATGTATC 58.467 41.667 0.00 0.00 0.00 2.24
550 965 5.537300 ACTAGTCGCTGAAATGGATGTAT 57.463 39.130 0.00 0.00 0.00 2.29
551 966 6.459670 TTACTAGTCGCTGAAATGGATGTA 57.540 37.500 0.00 0.00 0.00 2.29
552 967 3.895232 ACTAGTCGCTGAAATGGATGT 57.105 42.857 0.00 0.00 0.00 3.06
553 968 6.851222 AATTACTAGTCGCTGAAATGGATG 57.149 37.500 0.00 0.00 0.00 3.51
554 969 8.421784 TCTAAATTACTAGTCGCTGAAATGGAT 58.578 33.333 0.00 0.00 0.00 3.41
555 970 7.778083 TCTAAATTACTAGTCGCTGAAATGGA 58.222 34.615 0.00 0.00 0.00 3.41
556 971 8.328864 GTTCTAAATTACTAGTCGCTGAAATGG 58.671 37.037 0.00 0.00 0.00 3.16
557 972 8.050750 CGTTCTAAATTACTAGTCGCTGAAATG 58.949 37.037 0.00 0.00 0.00 2.32
558 973 7.222224 CCGTTCTAAATTACTAGTCGCTGAAAT 59.778 37.037 0.00 0.00 0.00 2.17
559 974 6.529125 CCGTTCTAAATTACTAGTCGCTGAAA 59.471 38.462 0.00 0.00 0.00 2.69
560 975 6.032094 CCGTTCTAAATTACTAGTCGCTGAA 58.968 40.000 0.00 0.00 0.00 3.02
561 976 5.355071 TCCGTTCTAAATTACTAGTCGCTGA 59.645 40.000 0.00 0.00 0.00 4.26
562 977 5.575957 TCCGTTCTAAATTACTAGTCGCTG 58.424 41.667 0.00 0.00 0.00 5.18
563 978 5.221009 CCTCCGTTCTAAATTACTAGTCGCT 60.221 44.000 0.00 0.00 0.00 4.93
564 979 4.974888 CCTCCGTTCTAAATTACTAGTCGC 59.025 45.833 0.00 0.00 0.00 5.19
565 980 5.297776 TCCCTCCGTTCTAAATTACTAGTCG 59.702 44.000 0.00 0.00 0.00 4.18
566 981 6.320926 ACTCCCTCCGTTCTAAATTACTAGTC 59.679 42.308 0.00 0.00 0.00 2.59
567 982 6.193504 ACTCCCTCCGTTCTAAATTACTAGT 58.806 40.000 0.00 0.00 0.00 2.57
568 983 6.712179 ACTCCCTCCGTTCTAAATTACTAG 57.288 41.667 0.00 0.00 0.00 2.57
569 984 8.000709 TGATACTCCCTCCGTTCTAAATTACTA 58.999 37.037 0.00 0.00 0.00 1.82
570 985 6.837568 TGATACTCCCTCCGTTCTAAATTACT 59.162 38.462 0.00 0.00 0.00 2.24
571 986 7.047460 TGATACTCCCTCCGTTCTAAATTAC 57.953 40.000 0.00 0.00 0.00 1.89
572 987 7.850935 ATGATACTCCCTCCGTTCTAAATTA 57.149 36.000 0.00 0.00 0.00 1.40
573 988 6.749036 ATGATACTCCCTCCGTTCTAAATT 57.251 37.500 0.00 0.00 0.00 1.82
574 989 9.191479 CTATATGATACTCCCTCCGTTCTAAAT 57.809 37.037 0.00 0.00 0.00 1.40
575 990 7.122353 GCTATATGATACTCCCTCCGTTCTAAA 59.878 40.741 0.00 0.00 0.00 1.85
576 991 6.602406 GCTATATGATACTCCCTCCGTTCTAA 59.398 42.308 0.00 0.00 0.00 2.10
577 992 6.069556 AGCTATATGATACTCCCTCCGTTCTA 60.070 42.308 0.00 0.00 0.00 2.10
578 993 4.951094 GCTATATGATACTCCCTCCGTTCT 59.049 45.833 0.00 0.00 0.00 3.01
579 994 4.951094 AGCTATATGATACTCCCTCCGTTC 59.049 45.833 0.00 0.00 0.00 3.95
580 995 4.936802 AGCTATATGATACTCCCTCCGTT 58.063 43.478 0.00 0.00 0.00 4.44
581 996 4.594675 AGCTATATGATACTCCCTCCGT 57.405 45.455 0.00 0.00 0.00 4.69
582 997 6.377429 TGTTTAGCTATATGATACTCCCTCCG 59.623 42.308 0.00 0.00 0.00 4.63
583 998 7.719871 TGTTTAGCTATATGATACTCCCTCC 57.280 40.000 0.00 0.00 0.00 4.30
584 999 8.808092 ACTTGTTTAGCTATATGATACTCCCTC 58.192 37.037 0.00 0.00 0.00 4.30
585 1000 8.589338 CACTTGTTTAGCTATATGATACTCCCT 58.411 37.037 0.00 0.00 0.00 4.20
586 1001 7.819900 CCACTTGTTTAGCTATATGATACTCCC 59.180 40.741 0.00 0.00 0.00 4.30
587 1002 8.585881 TCCACTTGTTTAGCTATATGATACTCC 58.414 37.037 0.00 0.00 0.00 3.85
588 1003 9.413048 GTCCACTTGTTTAGCTATATGATACTC 57.587 37.037 0.00 0.00 0.00 2.59
589 1004 8.924303 TGTCCACTTGTTTAGCTATATGATACT 58.076 33.333 0.00 0.00 0.00 2.12
599 1014 5.003804 CCACTTATGTCCACTTGTTTAGCT 58.996 41.667 0.00 0.00 0.00 3.32
616 1031 1.758280 CATACGTACTGGCCCCACTTA 59.242 52.381 0.00 0.00 0.00 2.24
625 1040 3.513680 TGTTGTAGCCATACGTACTGG 57.486 47.619 15.59 15.59 34.39 4.00
626 1041 4.326278 CACTTGTTGTAGCCATACGTACTG 59.674 45.833 0.00 0.00 34.39 2.74
627 1042 4.491676 CACTTGTTGTAGCCATACGTACT 58.508 43.478 0.00 0.00 34.39 2.73
628 1043 3.615496 CCACTTGTTGTAGCCATACGTAC 59.385 47.826 0.00 0.00 34.39 3.67
629 1044 3.852286 CCACTTGTTGTAGCCATACGTA 58.148 45.455 0.00 0.00 34.39 3.57
630 1045 2.695359 CCACTTGTTGTAGCCATACGT 58.305 47.619 0.00 0.00 34.39 3.57
631 1046 1.396996 GCCACTTGTTGTAGCCATACG 59.603 52.381 0.00 0.00 34.39 3.06
652 1067 0.843309 TGGCCATACATACTGGTGGG 59.157 55.000 0.00 0.00 36.10 4.61
654 1069 4.756642 CAGTTATGGCCATACATACTGGTG 59.243 45.833 31.56 17.75 36.10 4.17
655 1070 4.202461 CCAGTTATGGCCATACATACTGGT 60.202 45.833 39.11 17.94 41.45 4.00
656 1071 4.326826 CCAGTTATGGCCATACATACTGG 58.673 47.826 37.61 37.61 41.09 4.00
681 1096 4.468868 ACACTAGTAATCCAAGTACCCACC 59.531 45.833 0.00 0.00 0.00 4.61
682 1097 5.672421 ACACTAGTAATCCAAGTACCCAC 57.328 43.478 0.00 0.00 0.00 4.61
683 1098 6.325545 CCATACACTAGTAATCCAAGTACCCA 59.674 42.308 0.00 0.00 33.13 4.51
684 1099 6.740681 GCCATACACTAGTAATCCAAGTACCC 60.741 46.154 0.00 0.00 33.13 3.69
748 1163 0.912486 ATCCAAGTACTGGCCAGTCC 59.088 55.000 41.00 30.72 45.98 3.85
749 1164 2.359900 CAATCCAAGTACTGGCCAGTC 58.640 52.381 41.00 29.41 45.98 3.51
750 1165 1.614317 GCAATCCAAGTACTGGCCAGT 60.614 52.381 38.92 38.92 45.98 4.00
751 1166 1.098050 GCAATCCAAGTACTGGCCAG 58.902 55.000 31.60 31.60 45.98 4.85
752 1167 0.403655 TGCAATCCAAGTACTGGCCA 59.596 50.000 4.71 4.71 45.98 5.36
753 1168 1.767759 ATGCAATCCAAGTACTGGCC 58.232 50.000 0.00 0.00 45.98 5.36
754 1169 2.099756 GGAATGCAATCCAAGTACTGGC 59.900 50.000 16.26 0.00 45.98 4.85
755 1170 3.355378 TGGAATGCAATCCAAGTACTGG 58.645 45.455 21.40 0.14 46.36 4.00
787 1202 7.542130 GGCTAAGTGTCTGTAATCCAATTTTTG 59.458 37.037 0.00 0.00 0.00 2.44
789 1204 6.128007 CGGCTAAGTGTCTGTAATCCAATTTT 60.128 38.462 0.00 0.00 0.00 1.82
793 1208 3.369052 CCGGCTAAGTGTCTGTAATCCAA 60.369 47.826 0.00 0.00 0.00 3.53
804 1225 4.040095 ACTTAAGAAGAACCGGCTAAGTGT 59.960 41.667 10.09 0.00 0.00 3.55
831 1252 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
832 1253 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
833 1254 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
834 1255 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
835 1256 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
836 1257 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
837 1258 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
838 1259 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
839 1260 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
840 1261 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
841 1262 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
842 1263 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
843 1264 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
844 1265 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
851 1272 9.439500 CCATTTTTATCCATTTTGATGACAAGT 57.561 29.630 0.00 0.00 37.32 3.16
852 1273 9.656040 TCCATTTTTATCCATTTTGATGACAAG 57.344 29.630 0.00 0.00 37.32 3.16
854 1275 9.602568 CATCCATTTTTATCCATTTTGATGACA 57.397 29.630 0.00 0.00 0.00 3.58
855 1276 9.603921 ACATCCATTTTTATCCATTTTGATGAC 57.396 29.630 0.00 0.00 32.39 3.06
911 1332 9.918630 ACTTGTCATCAAAATGAATAAAAGGAG 57.081 29.630 0.00 0.00 43.42 3.69
919 1340 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
920 1341 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
921 1342 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
922 1343 6.851609 TCCGGAAATACTTGTCATCAAAATG 58.148 36.000 0.00 0.00 32.87 2.32
923 1344 7.416664 CCATCCGGAAATACTTGTCATCAAAAT 60.417 37.037 9.01 0.00 32.87 1.82
924 1345 6.127758 CCATCCGGAAATACTTGTCATCAAAA 60.128 38.462 9.01 0.00 32.87 2.44
925 1346 5.356751 CCATCCGGAAATACTTGTCATCAAA 59.643 40.000 9.01 0.00 32.87 2.69
926 1347 4.881273 CCATCCGGAAATACTTGTCATCAA 59.119 41.667 9.01 0.00 0.00 2.57
927 1348 4.163268 TCCATCCGGAAATACTTGTCATCA 59.837 41.667 9.01 0.00 38.83 3.07
928 1349 4.703897 TCCATCCGGAAATACTTGTCATC 58.296 43.478 9.01 0.00 38.83 2.92
929 1350 4.444876 CCTCCATCCGGAAATACTTGTCAT 60.445 45.833 9.01 0.00 42.21 3.06
930 1351 3.118408 CCTCCATCCGGAAATACTTGTCA 60.118 47.826 9.01 0.00 42.21 3.58
931 1352 3.467803 CCTCCATCCGGAAATACTTGTC 58.532 50.000 9.01 0.00 42.21 3.18
932 1353 2.172717 CCCTCCATCCGGAAATACTTGT 59.827 50.000 9.01 0.00 42.21 3.16
933 1354 2.438021 TCCCTCCATCCGGAAATACTTG 59.562 50.000 9.01 0.00 42.21 3.16
934 1355 2.706190 CTCCCTCCATCCGGAAATACTT 59.294 50.000 9.01 0.00 42.21 2.24
935 1356 2.330216 CTCCCTCCATCCGGAAATACT 58.670 52.381 9.01 0.00 42.21 2.12
936 1357 2.047830 ACTCCCTCCATCCGGAAATAC 58.952 52.381 9.01 0.00 42.21 1.89
937 1358 2.489528 ACTCCCTCCATCCGGAAATA 57.510 50.000 9.01 0.00 42.21 1.40
938 1359 2.047830 GTACTCCCTCCATCCGGAAAT 58.952 52.381 9.01 0.00 42.21 2.17
939 1360 1.007963 AGTACTCCCTCCATCCGGAAA 59.992 52.381 9.01 0.00 42.21 3.13
940 1361 0.635009 AGTACTCCCTCCATCCGGAA 59.365 55.000 9.01 0.00 42.21 4.30
941 1362 0.185416 GAGTACTCCCTCCATCCGGA 59.815 60.000 6.61 6.61 39.79 5.14
942 1363 0.106167 TGAGTACTCCCTCCATCCGG 60.106 60.000 20.11 0.00 0.00 5.14
943 1364 1.033574 GTGAGTACTCCCTCCATCCG 58.966 60.000 20.11 0.00 0.00 4.18
944 1365 2.463047 AGTGAGTACTCCCTCCATCC 57.537 55.000 20.11 0.00 28.79 3.51
945 1366 4.828072 AAAAGTGAGTACTCCCTCCATC 57.172 45.455 20.11 2.65 35.69 3.51
946 1367 4.019231 GGAAAAAGTGAGTACTCCCTCCAT 60.019 45.833 20.11 3.70 35.69 3.41
947 1368 3.326880 GGAAAAAGTGAGTACTCCCTCCA 59.673 47.826 20.11 0.00 35.69 3.86
948 1369 3.326880 TGGAAAAAGTGAGTACTCCCTCC 59.673 47.826 20.11 11.63 35.69 4.30
949 1370 4.618920 TGGAAAAAGTGAGTACTCCCTC 57.381 45.455 20.11 10.45 35.69 4.30
950 1371 5.584551 AATGGAAAAAGTGAGTACTCCCT 57.415 39.130 20.11 11.43 35.69 4.20
951 1372 5.768164 TCAAATGGAAAAAGTGAGTACTCCC 59.232 40.000 20.11 8.98 35.69 4.30
952 1373 6.877611 TCAAATGGAAAAAGTGAGTACTCC 57.122 37.500 20.11 11.29 35.69 3.85
953 1374 8.567948 TCATTCAAATGGAAAAAGTGAGTACTC 58.432 33.333 16.32 16.32 39.39 2.59
954 1375 8.463930 TCATTCAAATGGAAAAAGTGAGTACT 57.536 30.769 0.00 0.00 39.39 2.73
955 1376 9.696917 AATCATTCAAATGGAAAAAGTGAGTAC 57.303 29.630 3.05 0.00 39.39 2.73
975 1396 6.981762 TTGTTTGCAAGTTGTCAAATCATT 57.018 29.167 20.61 0.00 35.06 2.57
1013 1434 7.654022 TGTCCTTCTGTTGGTAAAAAGAAAT 57.346 32.000 0.00 0.00 38.82 2.17
1054 1475 9.699703 TGCTGCTATATATAGAGATACTACTCG 57.300 37.037 21.65 0.00 41.25 4.18
1115 1536 2.543653 GCTGCCATTGAACTGTTTCGTT 60.544 45.455 0.00 0.00 34.04 3.85
1160 1585 3.736759 GTGAAAAGTTGTCCTCGTCTCTC 59.263 47.826 0.00 0.00 0.00 3.20
1342 1777 6.740002 CGTCTTGATTTAAAACAGCTGATGAG 59.260 38.462 23.35 2.98 0.00 2.90
1441 1876 5.793817 TCGACATGTTGGGATGATTATAGG 58.206 41.667 13.27 0.00 0.00 2.57
1447 1882 1.839994 ACCTCGACATGTTGGGATGAT 59.160 47.619 15.09 0.00 0.00 2.45
1448 1883 1.275666 ACCTCGACATGTTGGGATGA 58.724 50.000 15.09 0.00 0.00 2.92
1449 1884 2.430694 TCTACCTCGACATGTTGGGATG 59.569 50.000 15.09 11.21 0.00 3.51
1453 1888 3.594603 ACTTCTACCTCGACATGTTGG 57.405 47.619 13.27 11.76 0.00 3.77
1498 1933 1.352083 TGAAGTTCCAGAGAGGTGGG 58.648 55.000 0.00 0.00 38.26 4.61
1503 1938 3.683822 GTGCTTCATGAAGTTCCAGAGAG 59.316 47.826 30.88 8.16 40.45 3.20
1508 1943 2.655090 TGGTGCTTCATGAAGTTCCA 57.345 45.000 30.93 30.93 40.45 3.53
1548 1987 7.011482 GTCTAGTTTCCGCATCATTTGTAGAAT 59.989 37.037 0.00 0.00 0.00 2.40
1563 2002 3.325870 TGTGCTGATTGTCTAGTTTCCG 58.674 45.455 0.00 0.00 0.00 4.30
1567 2006 9.502091 TTTTAGTTATGTGCTGATTGTCTAGTT 57.498 29.630 0.00 0.00 0.00 2.24
1570 2009 9.719355 TTCTTTTAGTTATGTGCTGATTGTCTA 57.281 29.630 0.00 0.00 0.00 2.59
1645 2084 5.045797 GGACCTCCAGTTCCAGTTAACTAAT 60.046 44.000 8.04 0.00 37.61 1.73
1678 2117 5.590259 GGGTACTGCAGTTTGATATTGATGT 59.410 40.000 27.06 0.00 0.00 3.06
1685 2124 4.832248 CTGAAGGGTACTGCAGTTTGATA 58.168 43.478 27.06 2.78 44.19 2.15
1742 2181 3.433957 TGTGGTTCACGTTGAAATATCCG 59.566 43.478 0.00 0.00 38.22 4.18
1767 2206 8.192110 GTGGGTTTGTTCACTCATTTAAGTTTA 58.808 33.333 0.00 0.00 27.08 2.01
1861 2300 8.764287 GTTTCATTATGAGGTTTCAAAAAGGTG 58.236 33.333 0.00 0.00 36.78 4.00
1915 2354 5.529791 TCTATGCCGTGCTTCTAATTCTAC 58.470 41.667 0.00 0.00 0.00 2.59
1995 2434 1.024271 TTTCAGGCTGCACACAAGAC 58.976 50.000 10.34 0.00 0.00 3.01
1999 2438 0.675083 CCAATTTCAGGCTGCACACA 59.325 50.000 10.34 0.00 0.00 3.72
2021 2460 4.859304 TTGCACAAGATTTGAAGCATCT 57.141 36.364 11.90 0.00 41.75 2.90
2049 2488 6.154021 GTGGGTATTTGTAGGTGAGTCTTCTA 59.846 42.308 0.00 0.00 0.00 2.10
2050 2489 5.046520 GTGGGTATTTGTAGGTGAGTCTTCT 60.047 44.000 0.00 0.00 0.00 2.85
2178 2618 4.162509 GTCCTTGCTTCCTGTAGAGGTTAT 59.837 45.833 5.71 0.00 40.76 1.89
2188 2628 2.087646 GCTTTAGGTCCTTGCTTCCTG 58.912 52.381 0.00 0.00 33.34 3.86
2197 2641 3.788227 TTGACATGTGCTTTAGGTCCT 57.212 42.857 1.15 0.00 0.00 3.85
2217 2661 3.808189 ACCAGAAGGGGCATATAGCTAT 58.192 45.455 11.77 11.77 42.91 2.97
2602 3048 4.000331 AGGATGCCTGATGTCGAATTAG 58.000 45.455 0.00 0.00 29.57 1.73
2604 3050 3.209410 GAAGGATGCCTGATGTCGAATT 58.791 45.455 0.00 0.00 32.13 2.17
2662 3405 8.554835 TTGGTTCGACACATTTATCTTATTCA 57.445 30.769 0.00 0.00 0.00 2.57
2669 3412 4.028383 CGCATTGGTTCGACACATTTATC 58.972 43.478 0.00 0.00 0.00 1.75
2760 3504 7.013178 TCACAAAAGAGCTAAATCATGTGTTGA 59.987 33.333 13.25 0.00 39.12 3.18
2761 3505 7.140705 TCACAAAAGAGCTAAATCATGTGTTG 58.859 34.615 13.25 0.00 0.00 3.33
2762 3506 7.275888 TCACAAAAGAGCTAAATCATGTGTT 57.724 32.000 13.25 0.00 0.00 3.32
2763 3507 6.882610 TCACAAAAGAGCTAAATCATGTGT 57.117 33.333 13.25 0.00 0.00 3.72
2786 3530 7.370383 GTGGAATAGTGTGATTGTCATGTTTT 58.630 34.615 0.00 0.00 0.00 2.43
2871 3616 5.639082 CACAGTAGTGCAGATTGTCACATTA 59.361 40.000 0.00 0.00 39.21 1.90
2884 3629 4.983671 ATTAGATCGTCACAGTAGTGCA 57.016 40.909 0.00 0.00 45.49 4.57
2906 3651 5.630121 TCTTAGGTGGAAAATGCTTCTGAA 58.370 37.500 0.00 0.00 0.00 3.02
2910 3655 5.703876 CAGTTCTTAGGTGGAAAATGCTTC 58.296 41.667 0.00 0.00 0.00 3.86
2916 3661 3.586470 TGGCAGTTCTTAGGTGGAAAA 57.414 42.857 0.00 0.00 0.00 2.29
2952 3697 9.715121 ACATGAAAATGTTTCAGAGCATTAAAT 57.285 25.926 0.00 0.00 35.92 1.40
2962 3708 5.199024 TCCACCACATGAAAATGTTTCAG 57.801 39.130 0.00 4.73 31.37 3.02
3021 3768 9.715121 TTTCACATAAAAGTAAATACGACTCCT 57.285 29.630 0.00 0.00 0.00 3.69
3131 3880 9.906660 GAGAGGATGACAAATACTCATTAGTAG 57.093 37.037 0.63 0.00 41.46 2.57
3150 3899 9.511404 TGATATATAACAATCCCATGAGAGGAT 57.489 33.333 0.00 0.00 46.38 3.24
3398 4150 9.482175 AGTAGAAGACCATCTATTCTAAGTTGT 57.518 33.333 0.00 0.00 37.30 3.32
3504 4257 6.411376 ACCCTTAATGATTCGTGTGATTGTA 58.589 36.000 0.00 0.00 0.00 2.41
3518 4271 7.460214 AGTTAACCATATGGACCCTTAATGA 57.540 36.000 28.77 0.00 38.94 2.57
3556 4309 4.050553 GAGCTTGCTGCAAAAACATAACA 58.949 39.130 16.74 0.00 45.94 2.41
3565 4318 3.613030 TCTCATATGAGCTTGCTGCAAA 58.387 40.909 25.27 1.42 45.94 3.68
3598 4351 8.198109 TCTGTTCTTACTTGCTCCAATAGTATC 58.802 37.037 0.00 0.00 0.00 2.24
3624 4377 5.128335 GGGATTTCATTTGCCTCTTTCATCT 59.872 40.000 0.00 0.00 0.00 2.90
3650 4403 7.987268 TCGTGATTACAAGCTCTAGTATTTG 57.013 36.000 0.00 0.00 0.00 2.32
4095 4848 1.620323 AGAAACTTCCCCTGCAAATGC 59.380 47.619 0.00 0.00 42.50 3.56
4195 4948 5.883115 TCCAATATGGCTTCATTTCGTGTAA 59.117 36.000 0.00 0.00 37.47 2.41
4496 5254 6.281405 CGGTGACCTTTGTAGCTATTATTCT 58.719 40.000 0.00 0.00 0.00 2.40
4569 5327 1.268386 CCGCAAGTTGCATGCTATCTG 60.268 52.381 26.56 13.21 45.36 2.90
4573 5331 0.804364 CTTCCGCAAGTTGCATGCTA 59.196 50.000 26.56 8.83 45.36 3.49
4694 5703 6.942532 ACTTGTCACTTTGCTCTTTGATAA 57.057 33.333 0.00 0.00 0.00 1.75
4784 5793 9.516314 GCAACACTTTACTTTGTTCTTTCTTAT 57.484 29.630 0.00 0.00 33.59 1.73
4788 5797 7.755582 ATGCAACACTTTACTTTGTTCTTTC 57.244 32.000 0.00 0.00 33.59 2.62
4791 5800 8.682710 TCTTAATGCAACACTTTACTTTGTTCT 58.317 29.630 0.00 0.00 33.59 3.01
4801 5810 7.288810 TGAATTCCTCTTAATGCAACACTTT 57.711 32.000 2.27 0.00 0.00 2.66
4857 5870 4.336993 TGCTAATACACCGCCCAAAATAAG 59.663 41.667 0.00 0.00 0.00 1.73
4860 5873 2.729194 TGCTAATACACCGCCCAAAAT 58.271 42.857 0.00 0.00 0.00 1.82
4906 5920 9.128107 GAAGTGAAACCATTGTTGTAATACATG 57.872 33.333 0.00 0.00 37.80 3.21
5079 6103 8.652290 ACCATTCCCATACTAGAAGAGAATAAC 58.348 37.037 0.00 0.00 0.00 1.89
5087 6111 9.799106 ATTGATAAACCATTCCCATACTAGAAG 57.201 33.333 0.00 0.00 0.00 2.85
5146 6176 6.890979 TCTGACATAGTAGATCCATGACAG 57.109 41.667 14.58 14.58 41.04 3.51
5147 6177 6.779539 ACATCTGACATAGTAGATCCATGACA 59.220 38.462 0.00 0.00 31.53 3.58
5162 6192 8.896744 CAATAATGGTACTTTCACATCTGACAT 58.103 33.333 0.00 0.00 0.00 3.06
5341 6384 5.378230 TCCTTCATGTATTCTGGAAGCAT 57.622 39.130 0.00 0.00 36.34 3.79
5388 6431 7.814587 CCTAAATGGTCCTCAAAAGAATGAAAC 59.185 37.037 0.00 0.00 0.00 2.78
5419 6462 3.402628 AACCACACGATAGCTGTTCTT 57.597 42.857 0.00 0.00 42.67 2.52
5492 6536 5.833082 ACTAGGTGCATATTTCTACACGAG 58.167 41.667 0.00 0.00 33.81 4.18
5688 6766 6.817765 TTGTAAAGCCACTATTCAAGGAAG 57.182 37.500 0.00 0.00 0.00 3.46
5704 6783 5.640732 GGCCAACATAGTCACATTGTAAAG 58.359 41.667 0.00 0.00 0.00 1.85
5751 6835 3.815401 CCACCCCTAATGCGAAGAAATAG 59.185 47.826 0.00 0.00 0.00 1.73
5753 6837 2.025321 ACCACCCCTAATGCGAAGAAAT 60.025 45.455 0.00 0.00 0.00 2.17
5760 6844 6.235664 ACTATTTATAACCACCCCTAATGCG 58.764 40.000 0.00 0.00 0.00 4.73
5862 6957 5.651576 TGAGATTGCCATGTATTTAAGTGCA 59.348 36.000 0.00 0.00 0.00 4.57
5892 6989 5.985911 TCTAAGTATTTTAGTGGTGAGGGC 58.014 41.667 0.00 0.00 0.00 5.19
5972 7069 1.158227 TGCAGGGGGCCAGAATTTT 59.842 52.632 4.39 0.00 43.89 1.82
5986 7083 0.109365 CTCTCGACTGTCCAGTGCAG 60.109 60.000 4.35 0.71 42.66 4.41
6119 7538 3.496870 GGGATGCCACTCCTTAACCATAG 60.497 52.174 0.00 0.00 35.50 2.23
6181 7600 6.371825 AGAAAGCTTACTTGCTAACGCTTAAT 59.628 34.615 0.00 0.00 40.28 1.40
6195 7614 6.985653 TCATATAGCAGGAGAAAGCTTACT 57.014 37.500 0.00 0.00 42.05 2.24
6302 7730 5.261216 TGGAGAAGAAGACACCAAAAGTTT 58.739 37.500 0.00 0.00 0.00 2.66
6307 7735 5.445069 TGAATTGGAGAAGAAGACACCAAA 58.555 37.500 0.00 0.00 42.53 3.28
6424 7875 6.148480 GTGCATATAGCTCCCTAAATTGACAG 59.852 42.308 0.00 0.00 45.94 3.51
6462 7928 7.241042 ACAAACTAGCTAGGTTCAACTCATA 57.759 36.000 21.34 0.00 28.98 2.15
6605 8080 7.612677 ACTCCAAAATATCTACAAACGAGTCT 58.387 34.615 0.00 0.00 0.00 3.24
6777 10294 4.340381 CCAGGGAATAAGGCTTTTCATGAG 59.660 45.833 4.45 1.84 0.00 2.90
6872 10389 5.503031 GCCTTGATGTGACAATTATGAGTCG 60.503 44.000 0.00 0.00 37.58 4.18
6897 10414 7.305474 GGATGTGAATTCGTGTTTCTTGTATT 58.695 34.615 0.04 0.00 0.00 1.89
6931 10448 6.370453 TCTGGCTGTGTATATCCTAGTAACA 58.630 40.000 0.00 0.00 0.00 2.41
6934 10451 7.907841 TTTTCTGGCTGTGTATATCCTAGTA 57.092 36.000 0.00 0.00 0.00 1.82
6944 10461 2.685897 GTGTGGTTTTTCTGGCTGTGTA 59.314 45.455 0.00 0.00 0.00 2.90
6949 10466 1.476488 GTGTGTGTGGTTTTTCTGGCT 59.524 47.619 0.00 0.00 0.00 4.75
6957 10474 1.237954 TGTGCGTGTGTGTGTGGTTT 61.238 50.000 0.00 0.00 0.00 3.27
6972 10489 2.222908 GCGCATCTCTTTTAGAGTGTGC 60.223 50.000 19.08 19.08 44.23 4.57
6980 10497 2.979401 TTTTGCGCGCATCTCTTTTA 57.021 40.000 36.83 15.05 0.00 1.52
6981 10498 1.987770 CATTTTGCGCGCATCTCTTTT 59.012 42.857 36.83 12.74 0.00 2.27
6983 10500 0.799534 GCATTTTGCGCGCATCTCTT 60.800 50.000 36.83 15.39 31.71 2.85
6985 10502 3.292602 GCATTTTGCGCGCATCTC 58.707 55.556 36.83 18.07 31.71 2.75
7039 10579 2.780094 CCTCTGCCATCTCGCGAGT 61.780 63.158 33.33 19.17 31.68 4.18
7040 10580 2.027314 CCTCTGCCATCTCGCGAG 59.973 66.667 30.03 30.03 32.67 5.03
7055 10595 1.908793 ATAGTATGGAGCGGCGCCT 60.909 57.895 30.40 19.35 0.00 5.52
7147 10689 6.737254 ACGTTGTAATATTGCTAAAGTGCT 57.263 33.333 5.11 0.00 0.00 4.40
7609 11154 4.769688 TGTGCCTTAGTGACTATGATTGG 58.230 43.478 7.04 0.74 0.00 3.16
7610 11155 8.501580 CAATATGTGCCTTAGTGACTATGATTG 58.498 37.037 7.04 4.65 0.00 2.67
7611 11156 8.213679 ACAATATGTGCCTTAGTGACTATGATT 58.786 33.333 7.04 0.00 0.00 2.57
7742 11298 7.147567 TGCATGAGTTACCTGAGGATGTAAATA 60.148 37.037 4.99 0.00 0.00 1.40
7823 11379 4.924305 TTCAACTTGTGTACGTCCTACT 57.076 40.909 0.00 0.00 0.00 2.57
7923 11480 1.486211 AGCTACATAGGCCAACGACT 58.514 50.000 5.01 0.00 0.00 4.18
7956 11513 7.179269 TGTCCCTTTAGTGTTTTTATGGCTAT 58.821 34.615 0.00 0.00 0.00 2.97
7961 11518 7.393234 TCCTCATGTCCCTTTAGTGTTTTTATG 59.607 37.037 0.00 0.00 0.00 1.90
7978 11535 2.098614 TGCTCAGTCTCTCCTCATGTC 58.901 52.381 0.00 0.00 0.00 3.06
7998 11555 8.474006 AAATTTAAAAGACGTTTGTTGCTTCT 57.526 26.923 0.00 0.00 0.00 2.85
8038 11630 3.011144 TCAGGGATGGCCTTATTGTTCAA 59.989 43.478 3.32 0.00 0.00 2.69
8143 11790 3.704566 ACGATTGGATAGTAGAGGCACAA 59.295 43.478 0.00 0.00 0.00 3.33
8216 11863 5.337652 CCTTCCAGGAGTTCTCGATAAGTTT 60.338 44.000 0.00 0.00 37.67 2.66
8233 11880 8.378565 AGATAATGGTGTAACATATCCTTCCAG 58.621 37.037 0.00 0.00 39.98 3.86
8369 12016 8.345224 GCAAAAAGCATCCTTATTGTATCTTC 57.655 34.615 0.00 0.00 44.79 2.87
8455 12102 3.576118 CCAGATAGACCACTTCCGATGAT 59.424 47.826 0.00 0.00 0.00 2.45
8703 12351 3.795623 GGAACGTCTAGGTTAGCATGA 57.204 47.619 0.00 0.00 0.00 3.07
8722 12370 2.613026 TTATACCAGGTGCATGACGG 57.387 50.000 0.76 0.00 0.00 4.79
8826 12475 6.316140 TGCTACTAGTGGTAAATCAAATGCTG 59.684 38.462 5.39 0.00 0.00 4.41
8910 12559 7.506938 AGCTATGATAACCAAAATAGGCAACAT 59.493 33.333 0.00 0.00 41.41 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.