Multiple sequence alignment - TraesCS3B01G100600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G100600 chr3B 100.000 6225 0 0 1 6225 66882968 66876744 0.000000e+00 11496.0
1 TraesCS3B01G100600 chr3B 83.460 526 78 5 5461 5977 505268484 505267959 1.210000e-131 481.0
2 TraesCS3B01G100600 chr3D 93.844 4077 174 30 2181 6224 43013720 43009688 0.000000e+00 6067.0
3 TraesCS3B01G100600 chr3D 86.323 1667 92 69 582 2154 43015342 43013718 0.000000e+00 1690.0
4 TraesCS3B01G100600 chr3D 84.291 522 73 5 5465 5977 388448856 388448335 9.320000e-138 501.0
5 TraesCS3B01G100600 chr3A 93.696 3252 126 24 3010 6223 55037864 55034654 0.000000e+00 4796.0
6 TraesCS3B01G100600 chr3A 84.705 1883 125 71 401 2154 55040495 55038647 0.000000e+00 1731.0
7 TraesCS3B01G100600 chr3A 93.846 780 41 5 2181 2957 55038649 55037874 0.000000e+00 1168.0
8 TraesCS3B01G100600 chr3A 94.345 336 16 3 1 334 50954341 50954675 4.300000e-141 512.0
9 TraesCS3B01G100600 chr3A 83.270 526 79 5 5461 5977 509543740 509543215 5.650000e-130 475.0
10 TraesCS3B01G100600 chr4A 94.152 342 17 3 1 341 701656440 701656779 9.250000e-143 518.0
11 TraesCS3B01G100600 chr4A 93.860 342 17 4 1 341 701653124 701653462 4.300000e-141 512.0
12 TraesCS3B01G100600 chr4A 94.578 332 15 3 1 330 693531282 693531612 1.550000e-140 510.0
13 TraesCS3B01G100600 chr4A 94.277 332 16 3 1 330 692476021 692476351 7.200000e-139 505.0
14 TraesCS3B01G100600 chr6B 94.880 332 14 3 1 330 539731730 539731400 3.330000e-142 516.0
15 TraesCS3B01G100600 chr6B 94.611 334 12 2 1 334 229723980 229724307 4.300000e-141 512.0
16 TraesCS3B01G100600 chr5D 94.562 331 16 2 1 331 404868733 404869061 1.550000e-140 510.0
17 TraesCS3B01G100600 chr2A 94.242 330 18 1 1 330 17552445 17552117 2.590000e-138 503.0
18 TraesCS3B01G100600 chr2A 76.862 631 91 31 3601 4213 48441556 48440963 7.840000e-79 305.0
19 TraesCS3B01G100600 chr5A 77.813 631 106 27 3601 4225 622418809 622419411 5.930000e-95 359.0
20 TraesCS3B01G100600 chr5A 94.118 34 2 0 508 541 456297485 456297518 1.100000e-02 52.8
21 TraesCS3B01G100600 chrUn 78.145 636 81 32 3606 4216 410721799 410722401 9.930000e-93 351.0
22 TraesCS3B01G100600 chr2D 77.984 645 83 33 3606 4225 44536921 44536311 3.570000e-92 350.0
23 TraesCS3B01G100600 chr6A 80.357 448 82 5 5542 5983 148529348 148529795 1.000000e-87 335.0
24 TraesCS3B01G100600 chr1B 83.221 149 17 4 6080 6224 428109127 428108983 5.060000e-26 130.0
25 TraesCS3B01G100600 chr1D 81.879 149 21 2 6079 6224 316010363 316010218 3.050000e-23 121.0
26 TraesCS3B01G100600 chr7D 94.118 34 2 0 508 541 47518197 47518230 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G100600 chr3B 66876744 66882968 6224 True 11496.0 11496 100.0000 1 6225 1 chr3B.!!$R1 6224
1 TraesCS3B01G100600 chr3B 505267959 505268484 525 True 481.0 481 83.4600 5461 5977 1 chr3B.!!$R2 516
2 TraesCS3B01G100600 chr3D 43009688 43015342 5654 True 3878.5 6067 90.0835 582 6224 2 chr3D.!!$R2 5642
3 TraesCS3B01G100600 chr3D 388448335 388448856 521 True 501.0 501 84.2910 5465 5977 1 chr3D.!!$R1 512
4 TraesCS3B01G100600 chr3A 55034654 55040495 5841 True 2565.0 4796 90.7490 401 6223 3 chr3A.!!$R2 5822
5 TraesCS3B01G100600 chr3A 509543215 509543740 525 True 475.0 475 83.2700 5461 5977 1 chr3A.!!$R1 516
6 TraesCS3B01G100600 chr4A 701653124 701656779 3655 False 515.0 518 94.0060 1 341 2 chr4A.!!$F3 340
7 TraesCS3B01G100600 chr2A 48440963 48441556 593 True 305.0 305 76.8620 3601 4213 1 chr2A.!!$R2 612
8 TraesCS3B01G100600 chr5A 622418809 622419411 602 False 359.0 359 77.8130 3601 4225 1 chr5A.!!$F2 624
9 TraesCS3B01G100600 chrUn 410721799 410722401 602 False 351.0 351 78.1450 3606 4216 1 chrUn.!!$F1 610
10 TraesCS3B01G100600 chr2D 44536311 44536921 610 True 350.0 350 77.9840 3606 4225 1 chr2D.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 372 0.105964 CGGTGTCACCTCCTGTTTCA 59.894 55.000 19.82 0.00 35.66 2.69 F
421 423 0.170339 GCATACCTTTGTTGACCCGC 59.830 55.000 0.00 0.00 0.00 6.13 F
1787 1939 0.317020 AGCACTGCTTCGCGTTTTTC 60.317 50.000 5.77 0.00 33.89 2.29 F
2589 2773 1.498865 GCAATATGACGTCAGGCGGG 61.499 60.000 24.41 12.68 46.52 6.13 F
3965 4660 1.220749 GACCTGGGCTGCATCGTAA 59.779 57.895 0.50 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1760 1912 0.642291 CGAAGCAGTGCTCATACACG 59.358 55.0 20.03 13.06 45.45 4.49 R
2339 2520 1.767759 ATGCAAGGCCTATTCACACC 58.232 50.0 5.16 0.00 0.00 4.16 R
2714 2898 1.242989 TTGCTATGCGTTCCAAAGCA 58.757 45.0 2.32 2.32 46.72 3.91 R
3978 4673 0.606401 ATACAGCTGTGTGCCACCAC 60.606 55.0 29.57 0.00 44.23 4.16 R
5272 5985 0.599991 CTGTCACTGCGGCTTGTACA 60.600 55.0 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.990967 CGCATGGGTGGGCTGTTT 60.991 61.111 0.68 0.00 0.00 2.83
217 219 4.838486 GTCCGCGCTCACGAGAGG 62.838 72.222 11.94 3.33 42.18 3.69
223 225 1.431440 CGCTCACGAGAGGAAGAGG 59.569 63.158 11.94 0.00 43.93 3.69
236 238 2.697751 AGGAAGAGGACGATCTGATTGG 59.302 50.000 9.61 0.00 0.00 3.16
251 253 8.023706 CGATCTGATTGGATAAAGATCTAACGA 58.976 37.037 0.00 0.00 41.82 3.85
283 285 1.254026 CGATCCGATGGCTAGGGTTA 58.746 55.000 0.00 0.00 0.00 2.85
300 302 2.824071 TTAGACCGGCCGAAGCGTTC 62.824 60.000 30.73 12.41 41.24 3.95
332 334 2.513666 CGCCTAGCATCGCCCAAA 60.514 61.111 0.00 0.00 0.00 3.28
336 338 1.536709 GCCTAGCATCGCCCAAAAATG 60.537 52.381 0.00 0.00 0.00 2.32
339 341 3.119173 CCTAGCATCGCCCAAAAATGAAA 60.119 43.478 0.00 0.00 0.00 2.69
340 342 2.963432 AGCATCGCCCAAAAATGAAAG 58.037 42.857 0.00 0.00 0.00 2.62
341 343 2.001872 GCATCGCCCAAAAATGAAAGG 58.998 47.619 0.00 0.00 0.00 3.11
343 345 0.320050 TCGCCCAAAAATGAAAGGCC 59.680 50.000 0.00 0.00 40.65 5.19
344 346 0.321346 CGCCCAAAAATGAAAGGCCT 59.679 50.000 0.00 0.00 40.65 5.19
345 347 1.672737 CGCCCAAAAATGAAAGGCCTC 60.673 52.381 5.23 0.00 40.65 4.70
346 348 1.672737 GCCCAAAAATGAAAGGCCTCG 60.673 52.381 5.23 0.00 37.66 4.63
347 349 1.892474 CCCAAAAATGAAAGGCCTCGA 59.108 47.619 5.23 0.00 0.00 4.04
348 350 2.352715 CCCAAAAATGAAAGGCCTCGAC 60.353 50.000 5.23 0.60 0.00 4.20
349 351 2.558359 CCAAAAATGAAAGGCCTCGACT 59.442 45.455 5.23 0.00 0.00 4.18
350 352 3.366374 CCAAAAATGAAAGGCCTCGACTC 60.366 47.826 5.23 0.95 0.00 3.36
351 353 2.115343 AAATGAAAGGCCTCGACTCC 57.885 50.000 5.23 0.00 0.00 3.85
352 354 0.108138 AATGAAAGGCCTCGACTCCG 60.108 55.000 5.23 0.00 37.07 4.63
353 355 1.961180 ATGAAAGGCCTCGACTCCGG 61.961 60.000 5.23 0.00 36.24 5.14
354 356 2.603776 AAAGGCCTCGACTCCGGT 60.604 61.111 5.23 0.00 36.24 5.28
355 357 2.837371 GAAAGGCCTCGACTCCGGTG 62.837 65.000 5.23 0.00 36.24 4.94
356 358 4.680537 AGGCCTCGACTCCGGTGT 62.681 66.667 9.33 9.33 36.24 4.16
357 359 4.131088 GGCCTCGACTCCGGTGTC 62.131 72.222 23.68 23.68 36.24 3.67
358 360 3.371063 GCCTCGACTCCGGTGTCA 61.371 66.667 30.16 18.61 36.82 3.58
359 361 2.567049 CCTCGACTCCGGTGTCAC 59.433 66.667 30.16 10.73 36.82 3.67
360 362 2.567049 CTCGACTCCGGTGTCACC 59.433 66.667 30.16 12.40 36.82 4.02
361 363 1.972223 CTCGACTCCGGTGTCACCT 60.972 63.158 30.16 0.37 35.66 4.00
362 364 1.924320 CTCGACTCCGGTGTCACCTC 61.924 65.000 30.16 9.41 35.66 3.85
363 365 2.971452 GACTCCGGTGTCACCTCC 59.029 66.667 27.42 3.60 35.66 4.30
364 366 1.606889 GACTCCGGTGTCACCTCCT 60.607 63.158 27.42 0.00 35.66 3.69
365 367 1.878656 GACTCCGGTGTCACCTCCTG 61.879 65.000 27.42 9.48 35.66 3.86
366 368 1.908793 CTCCGGTGTCACCTCCTGT 60.909 63.158 19.82 0.00 35.66 4.00
367 369 1.458777 TCCGGTGTCACCTCCTGTT 60.459 57.895 19.82 0.00 35.66 3.16
368 370 1.052124 TCCGGTGTCACCTCCTGTTT 61.052 55.000 19.82 0.00 35.66 2.83
369 371 0.602905 CCGGTGTCACCTCCTGTTTC 60.603 60.000 19.82 0.00 35.66 2.78
370 372 0.105964 CGGTGTCACCTCCTGTTTCA 59.894 55.000 19.82 0.00 35.66 2.69
371 373 1.873903 CGGTGTCACCTCCTGTTTCAG 60.874 57.143 19.82 0.00 35.66 3.02
372 374 1.141053 GGTGTCACCTCCTGTTTCAGT 59.859 52.381 15.22 0.00 34.73 3.41
373 375 2.421529 GGTGTCACCTCCTGTTTCAGTT 60.422 50.000 15.22 0.00 34.73 3.16
374 376 2.872858 GTGTCACCTCCTGTTTCAGTTC 59.127 50.000 0.00 0.00 0.00 3.01
375 377 2.158813 TGTCACCTCCTGTTTCAGTTCC 60.159 50.000 0.00 0.00 0.00 3.62
376 378 2.123589 TCACCTCCTGTTTCAGTTCCA 58.876 47.619 0.00 0.00 0.00 3.53
377 379 2.158813 TCACCTCCTGTTTCAGTTCCAC 60.159 50.000 0.00 0.00 0.00 4.02
378 380 1.143073 ACCTCCTGTTTCAGTTCCACC 59.857 52.381 0.00 0.00 0.00 4.61
379 381 1.142870 CCTCCTGTTTCAGTTCCACCA 59.857 52.381 0.00 0.00 0.00 4.17
380 382 2.222027 CTCCTGTTTCAGTTCCACCAC 58.778 52.381 0.00 0.00 0.00 4.16
381 383 1.562008 TCCTGTTTCAGTTCCACCACA 59.438 47.619 0.00 0.00 0.00 4.17
382 384 2.174639 TCCTGTTTCAGTTCCACCACAT 59.825 45.455 0.00 0.00 0.00 3.21
383 385 2.958355 CCTGTTTCAGTTCCACCACATT 59.042 45.455 0.00 0.00 0.00 2.71
384 386 3.384467 CCTGTTTCAGTTCCACCACATTT 59.616 43.478 0.00 0.00 0.00 2.32
385 387 4.362279 CTGTTTCAGTTCCACCACATTTG 58.638 43.478 0.00 0.00 0.00 2.32
386 388 3.766591 TGTTTCAGTTCCACCACATTTGT 59.233 39.130 0.00 0.00 0.00 2.83
387 389 4.950475 TGTTTCAGTTCCACCACATTTGTA 59.050 37.500 0.00 0.00 0.00 2.41
388 390 5.067153 TGTTTCAGTTCCACCACATTTGTAG 59.933 40.000 0.00 0.00 0.00 2.74
389 391 3.750371 TCAGTTCCACCACATTTGTAGG 58.250 45.455 0.00 0.00 0.00 3.18
390 392 3.137544 TCAGTTCCACCACATTTGTAGGT 59.862 43.478 0.00 0.00 35.65 3.08
391 393 4.348461 TCAGTTCCACCACATTTGTAGGTA 59.652 41.667 5.04 0.00 33.49 3.08
392 394 4.695455 CAGTTCCACCACATTTGTAGGTAG 59.305 45.833 5.04 0.28 33.49 3.18
393 395 3.992943 TCCACCACATTTGTAGGTAGG 57.007 47.619 5.04 8.36 33.49 3.18
394 396 2.026636 TCCACCACATTTGTAGGTAGGC 60.027 50.000 5.04 0.00 33.49 3.93
395 397 2.290641 CCACCACATTTGTAGGTAGGCA 60.291 50.000 5.04 0.00 33.49 4.75
396 398 2.747446 CACCACATTTGTAGGTAGGCAC 59.253 50.000 5.04 0.00 33.49 5.01
397 399 2.006888 CCACATTTGTAGGTAGGCACG 58.993 52.381 0.00 0.00 0.00 5.34
398 400 1.396996 CACATTTGTAGGTAGGCACGC 59.603 52.381 0.00 0.00 0.00 5.34
399 401 0.650512 CATTTGTAGGTAGGCACGCG 59.349 55.000 3.53 3.53 0.00 6.01
408 410 3.761445 TAGGCACGCGACGCATACC 62.761 63.158 21.35 16.49 0.00 2.73
421 423 0.170339 GCATACCTTTGTTGACCCGC 59.830 55.000 0.00 0.00 0.00 6.13
422 424 1.529226 CATACCTTTGTTGACCCGCA 58.471 50.000 0.00 0.00 0.00 5.69
435 437 0.550914 ACCCGCAGAGAGAGAGAGAT 59.449 55.000 0.00 0.00 0.00 2.75
436 438 0.953727 CCCGCAGAGAGAGAGAGATG 59.046 60.000 0.00 0.00 0.00 2.90
437 439 0.953727 CCGCAGAGAGAGAGAGATGG 59.046 60.000 0.00 0.00 0.00 3.51
438 440 1.476652 CCGCAGAGAGAGAGAGATGGA 60.477 57.143 0.00 0.00 0.00 3.41
439 441 1.875514 CGCAGAGAGAGAGAGATGGAG 59.124 57.143 0.00 0.00 0.00 3.86
440 442 2.485302 CGCAGAGAGAGAGAGATGGAGA 60.485 54.545 0.00 0.00 0.00 3.71
441 443 3.144506 GCAGAGAGAGAGAGATGGAGAG 58.855 54.545 0.00 0.00 0.00 3.20
442 444 3.748083 CAGAGAGAGAGAGATGGAGAGG 58.252 54.545 0.00 0.00 0.00 3.69
478 480 1.203523 CCTCTCTCTGTTGGGTCTTCG 59.796 57.143 0.00 0.00 0.00 3.79
536 554 3.013921 GAGTCGAGTCAGAGTCAATCCT 58.986 50.000 15.47 0.00 39.67 3.24
551 569 3.771479 TCAATCCTGACTGCTGATGTAGT 59.229 43.478 0.00 0.00 41.76 2.73
556 584 1.338105 TGACTGCTGATGTAGTGCCAC 60.338 52.381 0.00 0.00 39.21 5.01
557 585 0.979665 ACTGCTGATGTAGTGCCACT 59.020 50.000 1.54 1.54 37.73 4.00
569 597 1.488812 AGTGCCACTACCACAAACAGA 59.511 47.619 0.00 0.00 35.69 3.41
616 654 3.793144 GCCTCAGGAAGCAACGCG 61.793 66.667 3.53 3.53 0.00 6.01
624 662 1.197721 AGGAAGCAACGCGAAATCAAG 59.802 47.619 15.93 0.00 0.00 3.02
625 663 0.977674 GAAGCAACGCGAAATCAAGC 59.022 50.000 15.93 5.56 0.00 4.01
626 664 0.593128 AAGCAACGCGAAATCAAGCT 59.407 45.000 15.93 7.96 0.00 3.74
627 665 1.438651 AGCAACGCGAAATCAAGCTA 58.561 45.000 15.93 0.00 0.00 3.32
628 666 1.394917 AGCAACGCGAAATCAAGCTAG 59.605 47.619 15.93 0.00 0.00 3.42
629 667 1.393539 GCAACGCGAAATCAAGCTAGA 59.606 47.619 15.93 0.00 0.00 2.43
638 679 5.445939 GCGAAATCAAGCTAGAAAATCGACA 60.446 40.000 10.63 0.00 0.00 4.35
640 681 6.183360 CGAAATCAAGCTAGAAAATCGACAGT 60.183 38.462 0.00 0.00 0.00 3.55
654 695 2.499693 TCGACAGTATTGATTGCCCTCA 59.500 45.455 0.00 0.00 0.00 3.86
672 713 2.360350 CAGGCCACAGCACGGATT 60.360 61.111 5.01 0.00 42.56 3.01
698 739 1.220529 CCATACATGGCACGCAGTAG 58.779 55.000 0.00 0.00 39.66 2.57
712 753 3.556775 ACGCAGTAGTAAAACGCAAGAAA 59.443 39.130 0.00 0.00 41.94 2.52
728 781 6.636850 ACGCAAGAAATATGTCAAGTTTTCAC 59.363 34.615 0.00 0.00 43.62 3.18
732 785 6.373779 AGAAATATGTCAAGTTTTCACTGCG 58.626 36.000 0.00 0.00 31.60 5.18
733 786 4.685169 ATATGTCAAGTTTTCACTGCGG 57.315 40.909 0.00 0.00 31.60 5.69
735 788 1.939934 TGTCAAGTTTTCACTGCGGAG 59.060 47.619 0.85 0.85 31.60 4.63
750 804 3.669251 GCGGAGAGCTGGATTATTACT 57.331 47.619 0.00 0.00 44.04 2.24
752 806 3.257127 GCGGAGAGCTGGATTATTACTCT 59.743 47.826 0.00 0.00 44.04 3.24
758 812 7.475137 AGAGCTGGATTATTACTCTCATACC 57.525 40.000 0.00 0.00 32.30 2.73
759 813 7.013220 AGAGCTGGATTATTACTCTCATACCA 58.987 38.462 0.00 0.00 32.30 3.25
760 814 7.677745 AGAGCTGGATTATTACTCTCATACCAT 59.322 37.037 0.00 0.00 32.30 3.55
761 815 7.619050 AGCTGGATTATTACTCTCATACCATG 58.381 38.462 0.00 0.00 0.00 3.66
762 816 6.820656 GCTGGATTATTACTCTCATACCATGG 59.179 42.308 11.19 11.19 0.00 3.66
763 817 7.310671 GCTGGATTATTACTCTCATACCATGGA 60.311 40.741 21.47 2.01 0.00 3.41
764 818 8.504811 TGGATTATTACTCTCATACCATGGAA 57.495 34.615 21.47 0.00 0.00 3.53
765 819 9.116080 TGGATTATTACTCTCATACCATGGAAT 57.884 33.333 21.47 6.75 0.00 3.01
766 820 9.965902 GGATTATTACTCTCATACCATGGAATT 57.034 33.333 21.47 0.00 0.00 2.17
774 828 9.745018 ACTCTCATACCATGGAATTATTAATGG 57.255 33.333 21.47 14.17 44.31 3.16
777 831 8.579850 TCATACCATGGAATTATTAATGGCTC 57.420 34.615 21.47 0.00 42.83 4.70
779 833 5.714863 ACCATGGAATTATTAATGGCTCCA 58.285 37.500 21.47 13.49 42.83 3.86
782 836 4.141287 TGGAATTATTAATGGCTCCACCG 58.859 43.478 9.12 0.00 43.94 4.94
783 837 4.142038 GGAATTATTAATGGCTCCACCGT 58.858 43.478 0.00 0.00 43.94 4.83
784 838 4.023193 GGAATTATTAATGGCTCCACCGTG 60.023 45.833 0.00 0.00 43.94 4.94
790 844 2.614829 ATGGCTCCACCGTGTTATAC 57.385 50.000 0.00 0.00 43.94 1.47
802 856 1.135315 GTGTTATACACGCTGACCCGA 60.135 52.381 0.00 0.00 39.53 5.14
803 857 1.133598 TGTTATACACGCTGACCCGAG 59.866 52.381 0.00 0.00 0.00 4.63
804 858 1.402968 GTTATACACGCTGACCCGAGA 59.597 52.381 0.00 0.00 0.00 4.04
805 859 1.977056 TATACACGCTGACCCGAGAT 58.023 50.000 0.00 0.00 0.00 2.75
807 861 0.678684 TACACGCTGACCCGAGATCA 60.679 55.000 0.00 0.00 0.00 2.92
808 862 1.323271 ACACGCTGACCCGAGATCAT 61.323 55.000 0.00 0.00 0.00 2.45
809 863 0.596083 CACGCTGACCCGAGATCATC 60.596 60.000 0.00 0.00 0.00 2.92
813 868 1.617850 GCTGACCCGAGATCATCATCT 59.382 52.381 0.00 0.00 42.59 2.90
816 871 2.630098 TGACCCGAGATCATCATCTTCC 59.370 50.000 0.00 0.00 39.71 3.46
822 877 3.119884 CGAGATCATCATCTTCCTCCTCG 60.120 52.174 0.00 0.00 39.71 4.63
830 885 1.686355 TCTTCCTCCTCGATCTCAGC 58.314 55.000 0.00 0.00 0.00 4.26
837 892 0.826715 CCTCGATCTCAGCCCAGAAA 59.173 55.000 0.00 0.00 0.00 2.52
838 893 1.415659 CCTCGATCTCAGCCCAGAAAT 59.584 52.381 0.00 0.00 0.00 2.17
839 894 2.547642 CCTCGATCTCAGCCCAGAAATC 60.548 54.545 0.00 0.00 0.00 2.17
840 895 2.364970 CTCGATCTCAGCCCAGAAATCT 59.635 50.000 0.00 0.00 0.00 2.40
841 896 2.768527 TCGATCTCAGCCCAGAAATCTT 59.231 45.455 0.00 0.00 0.00 2.40
842 897 3.198635 TCGATCTCAGCCCAGAAATCTTT 59.801 43.478 0.00 0.00 0.00 2.52
869 924 4.247380 CAGCTCCTCGGGCCATCC 62.247 72.222 4.39 0.00 0.00 3.51
913 971 1.415200 CCCCTTCCTCTGGCTAGTAC 58.585 60.000 0.00 0.00 0.00 2.73
915 973 2.035632 CCCTTCCTCTGGCTAGTACTG 58.964 57.143 5.39 0.00 0.00 2.74
916 974 2.624557 CCCTTCCTCTGGCTAGTACTGT 60.625 54.545 5.39 0.00 0.00 3.55
917 975 3.372784 CCCTTCCTCTGGCTAGTACTGTA 60.373 52.174 5.39 0.00 0.00 2.74
918 976 3.886505 CCTTCCTCTGGCTAGTACTGTAG 59.113 52.174 5.39 0.00 0.00 2.74
919 977 4.528920 CTTCCTCTGGCTAGTACTGTAGT 58.471 47.826 5.39 0.22 0.00 2.73
920 978 5.397672 CCTTCCTCTGGCTAGTACTGTAGTA 60.398 48.000 5.39 2.60 0.00 1.82
965 1042 1.216678 TCCACCAACCACACCAAGAAT 59.783 47.619 0.00 0.00 0.00 2.40
1201 1303 2.949909 ATGGCCGCCGTCAAGTACA 61.950 57.895 4.58 0.00 0.00 2.90
1203 1315 2.356553 GCCGCCGTCAAGTACACA 60.357 61.111 0.00 0.00 0.00 3.72
1205 1317 1.300311 CCGCCGTCAAGTACACACA 60.300 57.895 0.00 0.00 0.00 3.72
1211 1323 3.797256 GCCGTCAAGTACACACATATCTC 59.203 47.826 0.00 0.00 0.00 2.75
1214 1326 5.163652 CCGTCAAGTACACACATATCTCTCA 60.164 44.000 0.00 0.00 0.00 3.27
1215 1327 6.460261 CCGTCAAGTACACACATATCTCTCAT 60.460 42.308 0.00 0.00 0.00 2.90
1216 1328 6.634837 CGTCAAGTACACACATATCTCTCATC 59.365 42.308 0.00 0.00 0.00 2.92
1217 1329 6.634837 GTCAAGTACACACATATCTCTCATCG 59.365 42.308 0.00 0.00 0.00 3.84
1218 1330 5.697473 AGTACACACATATCTCTCATCGG 57.303 43.478 0.00 0.00 0.00 4.18
1219 1331 3.377346 ACACACATATCTCTCATCGGC 57.623 47.619 0.00 0.00 0.00 5.54
1222 1334 2.560542 ACACATATCTCTCATCGGCTCC 59.439 50.000 0.00 0.00 0.00 4.70
1225 1337 1.814793 TATCTCTCATCGGCTCCTCG 58.185 55.000 0.00 0.00 0.00 4.63
1234 1346 1.471119 TCGGCTCCTCGTATTCAACT 58.529 50.000 0.00 0.00 0.00 3.16
1235 1347 2.646930 TCGGCTCCTCGTATTCAACTA 58.353 47.619 0.00 0.00 0.00 2.24
1236 1348 2.617308 TCGGCTCCTCGTATTCAACTAG 59.383 50.000 0.00 0.00 0.00 2.57
1237 1349 2.745102 GGCTCCTCGTATTCAACTAGC 58.255 52.381 0.00 0.00 0.00 3.42
1238 1350 2.362717 GGCTCCTCGTATTCAACTAGCT 59.637 50.000 0.00 0.00 0.00 3.32
1239 1351 3.376540 GCTCCTCGTATTCAACTAGCTG 58.623 50.000 0.00 0.00 0.00 4.24
1240 1352 3.797184 GCTCCTCGTATTCAACTAGCTGG 60.797 52.174 0.00 0.00 0.00 4.85
1257 1382 3.387374 AGCTGGTCAGTTCATCTATCCAG 59.613 47.826 0.00 0.00 42.91 3.86
1343 1480 2.737252 CGAGAAGAGCAAGGTAACCAAC 59.263 50.000 0.00 0.00 37.17 3.77
1481 1618 9.298774 GATTCAGAAAGAATTTTGGATAAGCAG 57.701 33.333 0.00 0.00 46.76 4.24
1637 1789 2.952245 CAGTTGCAGTCAGGCAGC 59.048 61.111 0.00 0.00 45.88 5.25
1766 1918 3.387091 TGCTCCGGCACCGTGTAT 61.387 61.111 8.49 0.00 44.28 2.29
1768 1920 2.889617 CTCCGGCACCGTGTATGA 59.110 61.111 8.49 0.00 37.81 2.15
1773 1925 1.079127 GGCACCGTGTATGAGCACT 60.079 57.895 0.00 0.00 37.24 4.40
1774 1926 1.361668 GGCACCGTGTATGAGCACTG 61.362 60.000 0.00 0.00 37.24 3.66
1776 1928 0.390340 CACCGTGTATGAGCACTGCT 60.390 55.000 2.22 2.22 43.88 4.24
1777 1929 0.321671 ACCGTGTATGAGCACTGCTT 59.678 50.000 4.67 0.00 39.88 3.91
1780 1932 0.371645 GTGTATGAGCACTGCTTCGC 59.628 55.000 4.67 0.42 39.88 4.70
1781 1933 1.078201 TGTATGAGCACTGCTTCGCG 61.078 55.000 4.67 0.00 39.88 5.87
1782 1934 1.078759 GTATGAGCACTGCTTCGCGT 61.079 55.000 5.77 0.00 39.88 6.01
1784 1936 1.230635 ATGAGCACTGCTTCGCGTTT 61.231 50.000 5.77 0.00 39.88 3.60
1785 1937 1.279840 GAGCACTGCTTCGCGTTTT 59.720 52.632 5.77 0.00 39.88 2.43
1787 1939 0.317020 AGCACTGCTTCGCGTTTTTC 60.317 50.000 5.77 0.00 33.89 2.29
1963 2141 7.066766 GCCTGAGATTTTAATATATCCTGGCTG 59.933 40.741 18.22 0.00 35.59 4.85
1991 2169 9.908152 TCCTGATATGAACTGTATTTATACACG 57.092 33.333 0.00 0.00 38.28 4.49
1992 2170 9.140286 CCTGATATGAACTGTATTTATACACGG 57.860 37.037 0.00 0.00 38.28 4.94
2013 2191 3.004106 GGCCTGTTCATGACATATGCTTC 59.996 47.826 1.58 0.00 37.69 3.86
2065 2245 2.413837 GCCAATAATAGGCGATGACGT 58.586 47.619 0.00 0.00 43.15 4.34
2149 2330 6.459670 TTTCAGGGGACACTTTCTTAAAAC 57.540 37.500 0.00 0.00 0.00 2.43
2154 2335 6.771267 CAGGGGACACTTTCTTAAAACTTACT 59.229 38.462 0.00 0.00 0.00 2.24
2155 2336 6.996879 AGGGGACACTTTCTTAAAACTTACTC 59.003 38.462 0.00 0.00 0.00 2.59
2156 2337 6.206243 GGGGACACTTTCTTAAAACTTACTCC 59.794 42.308 0.00 0.00 0.00 3.85
2157 2338 6.206243 GGGACACTTTCTTAAAACTTACTCCC 59.794 42.308 0.00 0.00 0.00 4.30
2158 2339 6.996879 GGACACTTTCTTAAAACTTACTCCCT 59.003 38.462 0.00 0.00 0.00 4.20
2159 2340 7.172875 GGACACTTTCTTAAAACTTACTCCCTC 59.827 40.741 0.00 0.00 0.00 4.30
2160 2341 7.803131 ACACTTTCTTAAAACTTACTCCCTCT 58.197 34.615 0.00 0.00 0.00 3.69
2161 2342 8.931568 ACACTTTCTTAAAACTTACTCCCTCTA 58.068 33.333 0.00 0.00 0.00 2.43
2162 2343 9.205719 CACTTTCTTAAAACTTACTCCCTCTAC 57.794 37.037 0.00 0.00 0.00 2.59
2163 2344 9.156940 ACTTTCTTAAAACTTACTCCCTCTACT 57.843 33.333 0.00 0.00 0.00 2.57
2167 2348 9.986157 TCTTAAAACTTACTCCCTCTACTATGA 57.014 33.333 0.00 0.00 0.00 2.15
2172 2353 9.939424 AAACTTACTCCCTCTACTATGATTAGT 57.061 33.333 0.00 0.00 41.57 2.24
2173 2354 9.577222 AACTTACTCCCTCTACTATGATTAGTC 57.423 37.037 0.00 0.00 39.42 2.59
2174 2355 8.725256 ACTTACTCCCTCTACTATGATTAGTCA 58.275 37.037 0.00 0.00 39.42 3.41
2175 2356 9.226606 CTTACTCCCTCTACTATGATTAGTCAG 57.773 40.741 0.00 0.00 39.42 3.51
2176 2357 7.156694 ACTCCCTCTACTATGATTAGTCAGT 57.843 40.000 0.00 0.00 39.42 3.41
2177 2358 7.001674 ACTCCCTCTACTATGATTAGTCAGTG 58.998 42.308 0.00 0.00 39.42 3.66
2178 2359 7.147284 ACTCCCTCTACTATGATTAGTCAGTGA 60.147 40.741 0.00 0.00 39.42 3.41
2179 2360 7.227873 TCCCTCTACTATGATTAGTCAGTGAG 58.772 42.308 0.00 0.00 39.42 3.51
2180 2361 7.001674 CCCTCTACTATGATTAGTCAGTGAGT 58.998 42.308 5.64 5.64 39.42 3.41
2181 2362 8.158132 CCCTCTACTATGATTAGTCAGTGAGTA 58.842 40.741 3.42 3.42 39.42 2.59
2182 2363 8.995220 CCTCTACTATGATTAGTCAGTGAGTAC 58.005 40.741 7.21 0.00 39.42 2.73
2189 2370 7.404671 TGATTAGTCAGTGAGTACATGCTAA 57.595 36.000 7.21 3.72 0.00 3.09
2195 2376 5.800941 GTCAGTGAGTACATGCTAACTGTAC 59.199 44.000 14.28 4.09 44.54 2.90
2196 2377 5.103000 CAGTGAGTACATGCTAACTGTACC 58.897 45.833 8.87 3.62 46.54 3.34
2206 2387 4.002982 TGCTAACTGTACCAAGCAAGATG 58.997 43.478 6.19 0.00 41.74 2.90
2217 2398 5.625150 ACCAAGCAAGATGAGTAAAGAAGT 58.375 37.500 0.00 0.00 0.00 3.01
2238 2419 9.965902 AGAAGTTCCAAATAATATGGCTATAGG 57.034 33.333 1.04 0.00 37.88 2.57
2244 2425 8.660435 TCCAAATAATATGGCTATAGGCTATCC 58.340 37.037 25.03 7.78 41.27 2.59
2362 2543 4.342092 GGTGTGAATAGGCCTTGCATTATT 59.658 41.667 12.58 2.43 0.00 1.40
2371 2555 5.272402 AGGCCTTGCATTATTCTAACCTTT 58.728 37.500 0.00 0.00 0.00 3.11
2375 2559 7.255277 GGCCTTGCATTATTCTAACCTTTAGAG 60.255 40.741 0.00 0.00 0.00 2.43
2412 2596 6.590292 TCTCTAATGACGACTTCCAAATGAAC 59.410 38.462 0.00 0.00 0.00 3.18
2413 2597 6.464222 TCTAATGACGACTTCCAAATGAACT 58.536 36.000 0.00 0.00 0.00 3.01
2511 2695 4.158025 GCACAGTTAGAGGCTGAAGTAGTA 59.842 45.833 0.00 0.00 37.40 1.82
2589 2773 1.498865 GCAATATGACGTCAGGCGGG 61.499 60.000 24.41 12.68 46.52 6.13
2637 2821 5.416862 AAACATCACGCGATTATATGCAA 57.583 34.783 15.93 0.00 0.00 4.08
2674 2858 3.057315 CACAAAGCCCGAAATGTGAGATT 60.057 43.478 0.00 0.00 44.52 2.40
2756 2940 9.648832 GCAATTTCCTTGTCTCCATGGTAACAG 62.649 44.444 12.58 1.17 43.69 3.16
2775 2959 7.066645 GGTAACAGAAGTTTCCTTTTGTACAGT 59.933 37.037 0.00 0.00 43.16 3.55
2778 2962 9.841295 AACAGAAGTTTCCTTTTGTACAGTATA 57.159 29.630 0.00 0.00 43.16 1.47
2817 3001 1.280133 TCTGCCTATGACAAAGCTGCT 59.720 47.619 0.00 0.00 0.00 4.24
2947 3131 3.492309 CCATTCACCTGAGATTCGAGAGG 60.492 52.174 0.00 0.00 0.00 3.69
2963 3147 5.933617 TCGAGAGGCTAGTATGTACCTTAA 58.066 41.667 0.00 0.00 30.95 1.85
2977 3161 5.009631 TGTACCTTAATGTCTTGCTTGCAT 58.990 37.500 0.00 0.00 0.00 3.96
2998 3182 5.686834 CATCTCAAATGTGTTGTCTGTCTG 58.313 41.667 0.00 0.00 0.00 3.51
3002 3186 5.423886 TCAAATGTGTTGTCTGTCTGTGTA 58.576 37.500 0.00 0.00 0.00 2.90
3004 3188 6.542005 TCAAATGTGTTGTCTGTCTGTGTATT 59.458 34.615 0.00 0.00 0.00 1.89
3005 3189 6.545504 AATGTGTTGTCTGTCTGTGTATTC 57.454 37.500 0.00 0.00 0.00 1.75
3006 3190 5.017294 TGTGTTGTCTGTCTGTGTATTCA 57.983 39.130 0.00 0.00 0.00 2.57
3007 3191 5.610398 TGTGTTGTCTGTCTGTGTATTCAT 58.390 37.500 0.00 0.00 0.00 2.57
3008 3192 6.054941 TGTGTTGTCTGTCTGTGTATTCATT 58.945 36.000 0.00 0.00 0.00 2.57
3090 3280 6.544564 GGTTTAATTGATCCCATCGAGGTAAA 59.455 38.462 0.00 0.00 34.66 2.01
3271 3463 6.097129 AGCTTGGGTACTTACTCTTCTCATAC 59.903 42.308 0.00 0.00 0.00 2.39
3349 3541 6.280855 TGTCAGCAGTAGTAATACATGTGT 57.719 37.500 9.11 0.00 0.00 3.72
3428 3622 5.856126 TTTTGCGAACTATTGTCCTACAG 57.144 39.130 0.00 0.00 0.00 2.74
3461 3655 5.392380 GGATGTGCTATCCACTGTTTTGAAG 60.392 44.000 13.58 0.00 44.92 3.02
3965 4660 1.220749 GACCTGGGCTGCATCGTAA 59.779 57.895 0.50 0.00 0.00 3.18
3978 4673 2.802816 GCATCGTAATTGCCTCTGGTAG 59.197 50.000 0.00 0.00 33.95 3.18
4003 4698 4.123497 TGGCACACAGCTGTATACTAAG 57.877 45.455 21.20 7.85 44.79 2.18
4020 4726 7.891183 ATACTAAGTTGTTCATGTGTCTGAC 57.109 36.000 0.00 0.00 0.00 3.51
4046 4752 7.645058 ATGTTTGCTTATGTTTACATAGCCT 57.355 32.000 15.34 0.00 39.69 4.58
4047 4753 8.746052 ATGTTTGCTTATGTTTACATAGCCTA 57.254 30.769 15.34 6.83 39.69 3.93
4053 4759 7.282224 TGCTTATGTTTACATAGCCTAAGTTGG 59.718 37.037 15.34 0.00 39.69 3.77
4068 4777 5.466393 CCTAAGTTGGCAAACATTCCAAAAG 59.534 40.000 6.76 0.00 43.25 2.27
4107 4816 1.581934 TCCTTGTTTGCTCAGTGACG 58.418 50.000 0.00 0.00 0.00 4.35
4342 5055 6.656693 ACTGGTAAAATCATGGAAGTCTCAAG 59.343 38.462 0.00 0.00 0.00 3.02
4364 5077 7.450323 TCAAGGAAGATACAAAAAGGGTAAAGG 59.550 37.037 0.00 0.00 0.00 3.11
4880 5593 7.147966 ACAGGTAAATCCAAATTAACCCGATTC 60.148 37.037 0.00 0.00 39.02 2.52
4929 5642 0.618458 TACCAGTGCCAATCCTGACC 59.382 55.000 0.00 0.00 0.00 4.02
4945 5658 2.673368 CTGACCGTGCTATTTGGTTCTC 59.327 50.000 0.00 0.00 35.75 2.87
5058 5771 6.889177 TGATCAATATGACCTTTTGCTGGTTA 59.111 34.615 0.00 0.00 38.03 2.85
5128 5841 0.321122 CGAATCCAGGGCCTATCAGC 60.321 60.000 5.28 0.00 0.00 4.26
5149 5862 1.545706 GGGGGATGGCTCCGATCTAC 61.546 65.000 0.00 0.00 43.11 2.59
5268 5981 4.128925 TGGTCATCTCTCTGTAACATGC 57.871 45.455 0.00 0.00 0.00 4.06
5272 5985 6.042437 TGGTCATCTCTCTGTAACATGCATAT 59.958 38.462 0.00 0.00 0.00 1.78
5342 6056 3.438360 CTCAAAACTGAAGGCACACAAC 58.562 45.455 0.00 0.00 0.00 3.32
5343 6057 2.822561 TCAAAACTGAAGGCACACAACA 59.177 40.909 0.00 0.00 0.00 3.33
5344 6058 2.923020 CAAAACTGAAGGCACACAACAC 59.077 45.455 0.00 0.00 0.00 3.32
5345 6059 1.832883 AACTGAAGGCACACAACACA 58.167 45.000 0.00 0.00 0.00 3.72
5346 6060 1.832883 ACTGAAGGCACACAACACAA 58.167 45.000 0.00 0.00 0.00 3.33
5450 6167 7.716799 ATATATACTTCCTTGCTCTCTCTGG 57.283 40.000 0.00 0.00 0.00 3.86
5454 6171 0.322975 TCCTTGCTCTCTCTGGCAAC 59.677 55.000 0.00 0.00 42.45 4.17
5459 6176 1.447489 CTCTCTCTGGCAACCGCAG 60.447 63.158 0.00 0.00 41.24 5.18
5661 6612 0.251354 TCTGCTCCCTGATCTTGTGC 59.749 55.000 0.00 0.00 0.00 4.57
5723 6674 3.125573 GAAACCGCCGCCCTCTTC 61.126 66.667 0.00 0.00 0.00 2.87
5754 6705 0.325933 CTCTGTTGTCCTGGGCATGA 59.674 55.000 0.00 0.33 0.00 3.07
5759 6710 2.292267 GTTGTCCTGGGCATGATGTAG 58.708 52.381 0.00 0.00 0.00 2.74
5836 6787 0.250513 GATCGGAGCTGTGGGTTCTT 59.749 55.000 0.00 0.00 0.00 2.52
5839 6790 0.250295 CGGAGCTGTGGGTTCTTTCA 60.250 55.000 0.00 0.00 0.00 2.69
5848 6799 3.725754 GGTTCTTTCACCCTCTGCA 57.274 52.632 0.00 0.00 0.00 4.41
5898 6849 2.401766 CGCACATCCTGTTCCTGGC 61.402 63.158 0.00 0.00 0.00 4.85
5921 6872 3.109619 CAATAAGAACGAGAGGAGTCGC 58.890 50.000 0.00 0.00 44.06 5.19
5971 7043 8.747677 GGTGTATCCAACATGGTACAAGAGTTC 61.748 44.444 0.00 2.53 41.10 3.01
6212 7901 1.824230 TGGTTTGGATGTGCTAATGGC 59.176 47.619 0.00 0.00 42.22 4.40
6224 7913 3.679980 GTGCTAATGGCGATGACGATATT 59.320 43.478 0.00 0.00 45.43 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.658422 CAAACAGCCCACCCATGC 59.342 61.111 0.00 0.00 0.00 4.06
26 27 0.109597 GGCTTCGTCCATGCAAACAG 60.110 55.000 0.00 0.00 0.00 3.16
28 29 1.154225 CGGCTTCGTCCATGCAAAC 60.154 57.895 0.00 0.00 0.00 2.93
31 32 4.015406 ACCGGCTTCGTCCATGCA 62.015 61.111 0.00 0.00 0.00 3.96
154 155 3.719144 CACGCGTTTTCCCCCGTC 61.719 66.667 10.22 0.00 0.00 4.79
178 180 0.034476 GAAAAGGAACCCCGTCTCGT 59.966 55.000 0.00 0.00 37.58 4.18
188 190 2.674084 CGCGGACGGGAAAAGGAAC 61.674 63.158 0.00 0.00 34.97 3.62
217 219 4.599047 ATCCAATCAGATCGTCCTCTTC 57.401 45.455 0.00 0.00 0.00 2.87
223 225 9.134734 GTTAGATCTTTATCCAATCAGATCGTC 57.865 37.037 0.00 0.00 44.37 4.20
236 238 5.568296 CGTCCCGATTCGTTAGATCTTTATC 59.432 44.000 0.00 0.00 0.00 1.75
269 271 0.314302 CGGTCTAACCCTAGCCATCG 59.686 60.000 0.00 0.00 33.75 3.84
276 278 1.000233 TTCGGCCGGTCTAACCCTA 60.000 57.895 27.83 0.00 33.75 3.53
283 285 4.736896 GAACGCTTCGGCCGGTCT 62.737 66.667 27.83 3.86 37.76 3.85
332 334 1.676014 CGGAGTCGAGGCCTTTCATTT 60.676 52.381 6.77 0.00 39.00 2.32
336 338 2.184579 CCGGAGTCGAGGCCTTTC 59.815 66.667 6.77 2.62 39.00 2.62
339 341 4.680537 ACACCGGAGTCGAGGCCT 62.681 66.667 9.46 3.86 39.00 5.19
340 342 4.131088 GACACCGGAGTCGAGGCC 62.131 72.222 16.44 0.00 39.00 5.19
341 343 3.371063 TGACACCGGAGTCGAGGC 61.371 66.667 24.23 4.28 41.41 4.70
343 345 1.924320 GAGGTGACACCGGAGTCGAG 61.924 65.000 24.23 2.87 44.90 4.04
344 346 1.970114 GAGGTGACACCGGAGTCGA 60.970 63.158 24.23 12.56 44.90 4.20
345 347 2.567049 GAGGTGACACCGGAGTCG 59.433 66.667 24.23 5.56 44.90 4.18
346 348 1.606889 AGGAGGTGACACCGGAGTC 60.607 63.158 23.40 23.40 46.96 3.36
347 349 1.908793 CAGGAGGTGACACCGGAGT 60.909 63.158 18.93 6.23 46.96 3.85
348 350 1.472662 AACAGGAGGTGACACCGGAG 61.473 60.000 18.93 1.26 46.96 4.63
349 351 1.052124 AAACAGGAGGTGACACCGGA 61.052 55.000 18.93 0.00 46.96 5.14
350 352 0.602905 GAAACAGGAGGTGACACCGG 60.603 60.000 18.93 12.12 46.96 5.28
351 353 0.105964 TGAAACAGGAGGTGACACCG 59.894 55.000 18.93 7.31 46.96 4.94
352 354 1.141053 ACTGAAACAGGAGGTGACACC 59.859 52.381 17.43 17.43 42.11 4.16
353 355 2.622064 ACTGAAACAGGAGGTGACAC 57.378 50.000 0.00 0.00 35.51 3.67
354 356 2.158813 GGAACTGAAACAGGAGGTGACA 60.159 50.000 0.00 0.00 35.51 3.58
355 357 2.158813 TGGAACTGAAACAGGAGGTGAC 60.159 50.000 0.00 0.00 35.51 3.67
356 358 2.123589 TGGAACTGAAACAGGAGGTGA 58.876 47.619 0.00 0.00 35.51 4.02
357 359 2.222027 GTGGAACTGAAACAGGAGGTG 58.778 52.381 0.00 0.00 35.51 4.00
358 360 1.143073 GGTGGAACTGAAACAGGAGGT 59.857 52.381 0.00 0.00 35.51 3.85
359 361 1.142870 TGGTGGAACTGAAACAGGAGG 59.857 52.381 0.00 0.00 35.51 4.30
360 362 2.222027 GTGGTGGAACTGAAACAGGAG 58.778 52.381 0.00 0.00 35.51 3.69
361 363 1.562008 TGTGGTGGAACTGAAACAGGA 59.438 47.619 0.00 0.00 35.51 3.86
362 364 2.051334 TGTGGTGGAACTGAAACAGG 57.949 50.000 0.00 0.00 35.51 4.00
363 365 4.142182 ACAAATGTGGTGGAACTGAAACAG 60.142 41.667 0.00 0.00 36.74 3.16
364 366 3.766591 ACAAATGTGGTGGAACTGAAACA 59.233 39.130 0.00 0.00 36.74 2.83
365 367 4.385358 ACAAATGTGGTGGAACTGAAAC 57.615 40.909 0.00 0.00 36.74 2.78
366 368 4.582656 CCTACAAATGTGGTGGAACTGAAA 59.417 41.667 0.00 0.00 36.74 2.69
367 369 4.141287 CCTACAAATGTGGTGGAACTGAA 58.859 43.478 0.00 0.00 36.74 3.02
368 370 3.137544 ACCTACAAATGTGGTGGAACTGA 59.862 43.478 3.78 0.00 36.74 3.41
369 371 3.486383 ACCTACAAATGTGGTGGAACTG 58.514 45.455 3.78 0.00 36.74 3.16
370 372 3.876309 ACCTACAAATGTGGTGGAACT 57.124 42.857 3.78 0.00 36.74 3.01
371 373 4.007659 CCTACCTACAAATGTGGTGGAAC 58.992 47.826 15.07 0.00 33.22 3.62
372 374 3.560453 GCCTACCTACAAATGTGGTGGAA 60.560 47.826 15.07 0.85 33.22 3.53
373 375 2.026636 GCCTACCTACAAATGTGGTGGA 60.027 50.000 15.07 0.00 33.22 4.02
374 376 2.290641 TGCCTACCTACAAATGTGGTGG 60.291 50.000 14.12 11.91 33.61 4.61
375 377 2.747446 GTGCCTACCTACAAATGTGGTG 59.253 50.000 14.12 2.39 33.61 4.17
376 378 2.614481 CGTGCCTACCTACAAATGTGGT 60.614 50.000 10.87 10.87 35.04 4.16
377 379 2.006888 CGTGCCTACCTACAAATGTGG 58.993 52.381 0.00 0.00 0.00 4.17
378 380 1.396996 GCGTGCCTACCTACAAATGTG 59.603 52.381 0.00 0.00 0.00 3.21
379 381 1.734163 GCGTGCCTACCTACAAATGT 58.266 50.000 0.00 0.00 0.00 2.71
380 382 0.650512 CGCGTGCCTACCTACAAATG 59.349 55.000 0.00 0.00 0.00 2.32
381 383 0.533491 TCGCGTGCCTACCTACAAAT 59.467 50.000 5.77 0.00 0.00 2.32
382 384 0.388907 GTCGCGTGCCTACCTACAAA 60.389 55.000 5.77 0.00 0.00 2.83
383 385 1.213537 GTCGCGTGCCTACCTACAA 59.786 57.895 5.77 0.00 0.00 2.41
384 386 2.879907 GTCGCGTGCCTACCTACA 59.120 61.111 5.77 0.00 0.00 2.74
385 387 2.277756 CGTCGCGTGCCTACCTAC 60.278 66.667 5.77 0.00 0.00 3.18
386 388 4.183686 GCGTCGCGTGCCTACCTA 62.184 66.667 5.77 0.00 0.00 3.08
388 390 3.761445 TATGCGTCGCGTGCCTACC 62.761 63.158 21.95 1.17 0.00 3.18
389 391 2.278336 TATGCGTCGCGTGCCTAC 60.278 61.111 21.95 4.36 0.00 3.18
390 392 2.278336 GTATGCGTCGCGTGCCTA 60.278 61.111 21.95 13.35 0.00 3.93
393 395 2.736682 AAAGGTATGCGTCGCGTGC 61.737 57.895 21.95 19.87 0.00 5.34
394 396 1.058748 CAAAGGTATGCGTCGCGTG 59.941 57.895 21.95 0.52 0.00 5.34
395 397 0.947180 AACAAAGGTATGCGTCGCGT 60.947 50.000 17.33 17.33 0.00 6.01
396 398 0.518355 CAACAAAGGTATGCGTCGCG 60.518 55.000 13.38 0.00 0.00 5.87
397 399 0.793861 TCAACAAAGGTATGCGTCGC 59.206 50.000 11.10 11.10 0.00 5.19
398 400 1.127951 GGTCAACAAAGGTATGCGTCG 59.872 52.381 0.00 0.00 0.00 5.12
399 401 1.467342 GGGTCAACAAAGGTATGCGTC 59.533 52.381 0.00 0.00 0.00 5.19
408 410 1.151668 CTCTCTGCGGGTCAACAAAG 58.848 55.000 0.00 0.00 0.00 2.77
421 423 3.497405 CCCTCTCCATCTCTCTCTCTCTG 60.497 56.522 0.00 0.00 0.00 3.35
422 424 2.713167 CCCTCTCCATCTCTCTCTCTCT 59.287 54.545 0.00 0.00 0.00 3.10
437 439 4.436998 CACCGCCACGTCCCTCTC 62.437 72.222 0.00 0.00 0.00 3.20
462 464 0.966920 GACCGAAGACCCAACAGAGA 59.033 55.000 0.00 0.00 0.00 3.10
508 510 3.936453 GACTCTGACTCGACTCTACATGT 59.064 47.826 2.69 2.69 0.00 3.21
509 511 3.935828 TGACTCTGACTCGACTCTACATG 59.064 47.826 0.00 0.00 0.00 3.21
510 512 4.209307 TGACTCTGACTCGACTCTACAT 57.791 45.455 0.00 0.00 0.00 2.29
515 517 3.013921 AGGATTGACTCTGACTCGACTC 58.986 50.000 0.00 0.00 0.00 3.36
516 518 2.752354 CAGGATTGACTCTGACTCGACT 59.248 50.000 0.00 0.00 33.11 4.18
518 520 3.073274 TCAGGATTGACTCTGACTCGA 57.927 47.619 0.00 0.00 35.37 4.04
536 554 0.975887 TGGCACTACATCAGCAGTCA 59.024 50.000 0.00 0.00 0.00 3.41
539 557 2.967599 TAGTGGCACTACATCAGCAG 57.032 50.000 22.96 0.00 0.00 4.24
548 566 2.701423 TCTGTTTGTGGTAGTGGCACTA 59.299 45.455 22.96 22.96 0.00 2.74
551 569 2.571212 CTTCTGTTTGTGGTAGTGGCA 58.429 47.619 0.00 0.00 0.00 4.92
556 584 3.744660 AGAAGCCTTCTGTTTGTGGTAG 58.255 45.455 6.08 0.00 38.91 3.18
557 585 3.857157 AGAAGCCTTCTGTTTGTGGTA 57.143 42.857 6.08 0.00 38.91 3.25
616 654 7.066374 ACTGTCGATTTTCTAGCTTGATTTC 57.934 36.000 0.00 0.00 0.00 2.17
624 662 6.848296 GCAATCAATACTGTCGATTTTCTAGC 59.152 38.462 0.00 0.00 0.00 3.42
625 663 7.348201 GGCAATCAATACTGTCGATTTTCTAG 58.652 38.462 0.00 0.00 0.00 2.43
626 664 6.260050 GGGCAATCAATACTGTCGATTTTCTA 59.740 38.462 0.00 0.00 0.00 2.10
627 665 5.066505 GGGCAATCAATACTGTCGATTTTCT 59.933 40.000 0.00 0.00 0.00 2.52
628 666 5.066505 AGGGCAATCAATACTGTCGATTTTC 59.933 40.000 0.00 0.00 0.00 2.29
629 667 4.949856 AGGGCAATCAATACTGTCGATTTT 59.050 37.500 0.00 0.00 0.00 1.82
638 679 3.287867 CCTGTGAGGGCAATCAATACT 57.712 47.619 0.00 0.00 0.00 2.12
654 695 3.196207 AATCCGTGCTGTGGCCTGT 62.196 57.895 3.32 0.00 37.74 4.00
698 739 8.502161 AACTTGACATATTTCTTGCGTTTTAC 57.498 30.769 0.00 0.00 0.00 2.01
712 753 4.323417 TCCGCAGTGAAAACTTGACATAT 58.677 39.130 0.00 0.00 0.00 1.78
728 781 2.540265 AATAATCCAGCTCTCCGCAG 57.460 50.000 0.00 0.00 42.61 5.18
732 785 6.603940 ATGAGAGTAATAATCCAGCTCTCC 57.396 41.667 14.71 1.66 46.81 3.71
735 788 7.233389 TGGTATGAGAGTAATAATCCAGCTC 57.767 40.000 0.00 0.00 0.00 4.09
749 803 8.680903 GCCATTAATAATTCCATGGTATGAGAG 58.319 37.037 12.58 0.00 38.81 3.20
750 804 8.393259 AGCCATTAATAATTCCATGGTATGAGA 58.607 33.333 12.58 0.00 38.81 3.27
752 806 7.615365 GGAGCCATTAATAATTCCATGGTATGA 59.385 37.037 12.58 0.28 38.81 2.15
754 808 7.397192 GTGGAGCCATTAATAATTCCATGGTAT 59.603 37.037 12.58 4.51 38.81 2.73
755 809 6.719370 GTGGAGCCATTAATAATTCCATGGTA 59.281 38.462 12.58 1.50 38.81 3.25
756 810 5.539955 GTGGAGCCATTAATAATTCCATGGT 59.460 40.000 12.58 0.00 38.81 3.55
757 811 5.047092 GGTGGAGCCATTAATAATTCCATGG 60.047 44.000 4.97 4.97 39.48 3.66
758 812 5.335897 CGGTGGAGCCATTAATAATTCCATG 60.336 44.000 13.81 8.53 37.10 3.66
759 813 4.766891 CGGTGGAGCCATTAATAATTCCAT 59.233 41.667 13.81 0.00 37.10 3.41
760 814 4.141287 CGGTGGAGCCATTAATAATTCCA 58.859 43.478 8.95 8.95 36.97 3.53
761 815 4.023193 CACGGTGGAGCCATTAATAATTCC 60.023 45.833 0.00 0.00 36.97 3.01
762 816 4.578928 ACACGGTGGAGCCATTAATAATTC 59.421 41.667 13.48 0.00 36.97 2.17
763 817 4.532834 ACACGGTGGAGCCATTAATAATT 58.467 39.130 13.48 0.00 36.97 1.40
764 818 4.164843 ACACGGTGGAGCCATTAATAAT 57.835 40.909 13.48 0.00 36.97 1.28
765 819 3.637911 ACACGGTGGAGCCATTAATAA 57.362 42.857 13.48 0.00 36.97 1.40
766 820 3.637911 AACACGGTGGAGCCATTAATA 57.362 42.857 13.48 0.00 36.97 0.98
767 821 2.507407 AACACGGTGGAGCCATTAAT 57.493 45.000 13.48 0.00 36.97 1.40
768 822 3.637911 ATAACACGGTGGAGCCATTAA 57.362 42.857 13.48 0.00 36.97 1.40
769 823 3.451540 TGTATAACACGGTGGAGCCATTA 59.548 43.478 13.48 1.28 36.97 1.90
770 824 2.237643 TGTATAACACGGTGGAGCCATT 59.762 45.455 13.48 0.00 36.97 3.16
771 825 1.834896 TGTATAACACGGTGGAGCCAT 59.165 47.619 13.48 0.93 36.97 4.40
772 826 1.066716 GTGTATAACACGGTGGAGCCA 60.067 52.381 13.48 0.00 39.53 4.75
773 827 1.648504 GTGTATAACACGGTGGAGCC 58.351 55.000 13.48 0.00 39.53 4.70
782 836 1.135315 TCGGGTCAGCGTGTATAACAC 60.135 52.381 0.01 0.01 45.26 3.32
783 837 1.133598 CTCGGGTCAGCGTGTATAACA 59.866 52.381 0.00 0.00 0.00 2.41
784 838 1.402968 TCTCGGGTCAGCGTGTATAAC 59.597 52.381 0.00 0.00 0.00 1.89
790 844 0.596083 GATGATCTCGGGTCAGCGTG 60.596 60.000 0.00 0.00 0.00 5.34
802 856 4.111255 TCGAGGAGGAAGATGATGATCT 57.889 45.455 0.00 0.00 41.00 2.75
803 857 4.706476 AGATCGAGGAGGAAGATGATGATC 59.294 45.833 0.00 0.00 0.00 2.92
804 858 4.676109 AGATCGAGGAGGAAGATGATGAT 58.324 43.478 0.00 0.00 0.00 2.45
805 859 4.078537 GAGATCGAGGAGGAAGATGATGA 58.921 47.826 0.00 0.00 0.00 2.92
807 861 4.081406 CTGAGATCGAGGAGGAAGATGAT 58.919 47.826 0.00 0.00 0.00 2.45
808 862 3.485394 CTGAGATCGAGGAGGAAGATGA 58.515 50.000 0.00 0.00 0.00 2.92
809 863 2.030007 GCTGAGATCGAGGAGGAAGATG 60.030 54.545 0.00 0.00 0.00 2.90
813 868 0.757188 GGGCTGAGATCGAGGAGGAA 60.757 60.000 0.00 0.00 0.00 3.36
816 871 0.467106 TCTGGGCTGAGATCGAGGAG 60.467 60.000 0.00 0.00 0.00 3.69
822 877 4.946157 TGAAAAGATTTCTGGGCTGAGATC 59.054 41.667 4.65 0.00 0.00 2.75
830 885 4.584325 TGACCTTGTGAAAAGATTTCTGGG 59.416 41.667 4.65 4.30 0.00 4.45
837 892 3.073650 AGGAGCTGACCTTGTGAAAAGAT 59.926 43.478 0.00 0.00 36.86 2.40
838 893 2.439507 AGGAGCTGACCTTGTGAAAAGA 59.560 45.455 0.00 0.00 36.86 2.52
839 894 2.810852 GAGGAGCTGACCTTGTGAAAAG 59.189 50.000 0.00 0.00 40.73 2.27
840 895 2.806745 CGAGGAGCTGACCTTGTGAAAA 60.807 50.000 0.00 0.00 40.73 2.29
841 896 1.270305 CGAGGAGCTGACCTTGTGAAA 60.270 52.381 0.00 0.00 40.73 2.69
842 897 0.318441 CGAGGAGCTGACCTTGTGAA 59.682 55.000 0.00 0.00 40.73 3.18
869 924 0.171455 CAAAGAGGAGGGACGACGAG 59.829 60.000 0.00 0.00 0.00 4.18
921 979 9.877178 GGATGGGAGTGAATTGTTATATACTAG 57.123 37.037 0.00 0.00 0.00 2.57
939 1016 0.609131 GTGTGGTTGGTGGATGGGAG 60.609 60.000 0.00 0.00 0.00 4.30
944 1021 0.850100 TCTTGGTGTGGTTGGTGGAT 59.150 50.000 0.00 0.00 0.00 3.41
1201 1303 2.560542 GGAGCCGATGAGAGATATGTGT 59.439 50.000 0.00 0.00 0.00 3.72
1203 1315 3.088532 GAGGAGCCGATGAGAGATATGT 58.911 50.000 0.00 0.00 0.00 2.29
1205 1317 2.290641 ACGAGGAGCCGATGAGAGATAT 60.291 50.000 0.00 0.00 0.00 1.63
1211 1323 1.609072 TGAATACGAGGAGCCGATGAG 59.391 52.381 0.00 0.00 0.00 2.90
1214 1326 2.032620 AGTTGAATACGAGGAGCCGAT 58.967 47.619 0.00 0.00 0.00 4.18
1215 1327 1.471119 AGTTGAATACGAGGAGCCGA 58.529 50.000 0.00 0.00 0.00 5.54
1216 1328 2.859032 GCTAGTTGAATACGAGGAGCCG 60.859 54.545 0.00 0.00 30.88 5.52
1217 1329 2.362717 AGCTAGTTGAATACGAGGAGCC 59.637 50.000 0.00 0.00 30.88 4.70
1218 1330 3.376540 CAGCTAGTTGAATACGAGGAGC 58.623 50.000 0.00 0.00 30.88 4.70
1219 1331 3.381908 ACCAGCTAGTTGAATACGAGGAG 59.618 47.826 8.34 0.00 30.88 3.69
1222 1334 4.142359 ACTGACCAGCTAGTTGAATACGAG 60.142 45.833 8.34 0.00 33.11 4.18
1225 1337 5.479306 TGAACTGACCAGCTAGTTGAATAC 58.521 41.667 8.34 0.00 37.27 1.89
1234 1346 4.546674 TGGATAGATGAACTGACCAGCTA 58.453 43.478 0.00 0.00 37.01 3.32
1235 1347 3.378512 TGGATAGATGAACTGACCAGCT 58.621 45.455 0.00 0.00 33.77 4.24
1236 1348 3.133721 ACTGGATAGATGAACTGACCAGC 59.866 47.826 0.00 0.00 46.35 4.85
1237 1349 4.202202 GGACTGGATAGATGAACTGACCAG 60.202 50.000 0.00 0.00 47.00 4.00
1238 1350 3.706594 GGACTGGATAGATGAACTGACCA 59.293 47.826 0.00 0.00 35.34 4.02
1239 1351 3.706594 TGGACTGGATAGATGAACTGACC 59.293 47.826 0.00 0.00 0.00 4.02
1240 1352 5.344743 TTGGACTGGATAGATGAACTGAC 57.655 43.478 0.00 0.00 0.00 3.51
1257 1382 4.057432 GAGCAGAGCAGATTAGATTGGAC 58.943 47.826 0.00 0.00 0.00 4.02
1310 1447 1.007271 CTTCTCGGCGGCGATGTAT 60.007 57.895 34.71 0.00 0.00 2.29
1343 1480 2.411628 TAATCGGTGGTGGTGATTGG 57.588 50.000 0.00 0.00 34.40 3.16
1347 1484 1.057471 TGGTTAATCGGTGGTGGTGA 58.943 50.000 0.00 0.00 0.00 4.02
1469 1606 7.577303 AGAAGATATTGTCCTGCTTATCCAAA 58.423 34.615 0.00 0.00 0.00 3.28
1481 1618 5.392380 CCAACAGTGCAAGAAGATATTGTCC 60.392 44.000 0.00 0.00 0.00 4.02
1637 1789 1.493311 GTTCTTCTTGCTGGACGCG 59.507 57.895 3.53 3.53 43.27 6.01
1760 1912 0.642291 CGAAGCAGTGCTCATACACG 59.358 55.000 20.03 13.06 45.45 4.49
1777 1929 5.683743 AGAATTTGAAATTCGAAAAACGCGA 59.316 32.000 21.02 0.00 42.26 5.87
1780 1932 9.382244 AGAGTAGAATTTGAAATTCGAAAAACG 57.618 29.630 21.02 0.00 44.09 3.60
1782 1934 9.180678 GCAGAGTAGAATTTGAAATTCGAAAAA 57.819 29.630 21.02 0.00 33.51 1.94
1784 1936 8.017373 CAGCAGAGTAGAATTTGAAATTCGAAA 58.983 33.333 21.02 10.83 33.51 3.46
1785 1937 7.173218 ACAGCAGAGTAGAATTTGAAATTCGAA 59.827 33.333 21.02 12.91 33.51 3.71
1787 1939 6.835914 ACAGCAGAGTAGAATTTGAAATTCG 58.164 36.000 21.02 9.83 33.51 3.34
1835 2013 1.861575 GCAGAGTTAGGCACGCTTATC 59.138 52.381 0.00 0.00 32.22 1.75
1963 2141 9.929180 TGTATAAATACAGTTCATATCAGGAGC 57.071 33.333 0.00 0.00 38.28 4.70
1991 2169 2.579873 AGCATATGTCATGAACAGGCC 58.420 47.619 4.29 0.00 42.37 5.19
1992 2170 3.303593 CGAAGCATATGTCATGAACAGGC 60.304 47.826 4.29 0.00 42.37 4.85
2013 2191 3.313012 TGTGAGGTGGAAAGTGATACG 57.687 47.619 0.00 0.00 0.00 3.06
2149 2330 9.226606 CTGACTAATCATAGTAGAGGGAGTAAG 57.773 40.741 0.00 0.00 42.47 2.34
2154 2335 7.147284 ACTCACTGACTAATCATAGTAGAGGGA 60.147 40.741 0.00 0.00 42.47 4.20
2155 2336 7.001674 ACTCACTGACTAATCATAGTAGAGGG 58.998 42.308 0.00 0.00 42.47 4.30
2156 2337 8.995220 GTACTCACTGACTAATCATAGTAGAGG 58.005 40.741 0.00 0.00 42.47 3.69
2157 2338 9.549078 TGTACTCACTGACTAATCATAGTAGAG 57.451 37.037 0.00 0.00 42.47 2.43
2160 2341 8.568794 GCATGTACTCACTGACTAATCATAGTA 58.431 37.037 0.00 0.00 42.47 1.82
2161 2342 7.286546 AGCATGTACTCACTGACTAATCATAGT 59.713 37.037 0.00 0.00 45.10 2.12
2162 2343 7.656412 AGCATGTACTCACTGACTAATCATAG 58.344 38.462 0.00 0.00 33.22 2.23
2163 2344 7.588497 AGCATGTACTCACTGACTAATCATA 57.412 36.000 0.00 0.00 33.22 2.15
2164 2345 6.477053 AGCATGTACTCACTGACTAATCAT 57.523 37.500 0.00 0.00 33.22 2.45
2165 2346 5.921962 AGCATGTACTCACTGACTAATCA 57.078 39.130 0.00 0.00 0.00 2.57
2166 2347 7.433719 CAGTTAGCATGTACTCACTGACTAATC 59.566 40.741 8.27 0.00 42.12 1.75
2167 2348 7.093727 ACAGTTAGCATGTACTCACTGACTAAT 60.094 37.037 16.77 0.00 42.12 1.73
2168 2349 6.208797 ACAGTTAGCATGTACTCACTGACTAA 59.791 38.462 16.77 1.35 42.12 2.24
2169 2350 5.710567 ACAGTTAGCATGTACTCACTGACTA 59.289 40.000 16.77 0.00 42.12 2.59
2170 2351 4.524714 ACAGTTAGCATGTACTCACTGACT 59.475 41.667 16.77 5.01 42.12 3.41
2171 2352 4.810790 ACAGTTAGCATGTACTCACTGAC 58.189 43.478 16.77 3.12 42.12 3.51
2172 2353 5.950883 GTACAGTTAGCATGTACTCACTGA 58.049 41.667 16.77 3.69 46.14 3.41
2176 2357 8.195433 TGCTTGGTACAGTTAGCATGTACTCA 62.195 42.308 14.00 8.86 43.65 3.41
2177 2358 5.853355 TGCTTGGTACAGTTAGCATGTACTC 60.853 44.000 14.00 6.88 43.65 2.59
2178 2359 4.020573 TGCTTGGTACAGTTAGCATGTACT 60.021 41.667 14.00 0.00 43.65 2.73
2179 2360 4.250464 TGCTTGGTACAGTTAGCATGTAC 58.750 43.478 7.54 7.54 43.65 2.90
2180 2361 4.545208 TGCTTGGTACAGTTAGCATGTA 57.455 40.909 0.00 0.00 43.65 2.29
2181 2362 3.417069 TGCTTGGTACAGTTAGCATGT 57.583 42.857 0.00 0.00 43.65 3.21
2189 2370 5.483685 TTACTCATCTTGCTTGGTACAGT 57.516 39.130 0.00 0.00 42.39 3.55
2195 2376 6.348868 GGAACTTCTTTACTCATCTTGCTTGG 60.349 42.308 0.00 0.00 0.00 3.61
2196 2377 6.205464 TGGAACTTCTTTACTCATCTTGCTTG 59.795 38.462 0.00 0.00 0.00 4.01
2206 2387 9.952188 GCCATATTATTTGGAACTTCTTTACTC 57.048 33.333 5.88 0.00 36.26 2.59
2231 2412 7.102847 ACTAATCTTTCGGATAGCCTATAGC 57.897 40.000 0.00 0.00 36.07 2.97
2238 2419 5.833082 TCACTGACTAATCTTTCGGATAGC 58.167 41.667 0.00 0.00 33.71 2.97
2270 2451 7.935755 CGCTATCCCTATTATTGATCATGGAAT 59.064 37.037 0.00 0.00 0.00 3.01
2330 2511 2.351726 GCCTATTCACACCGCAACTTAG 59.648 50.000 0.00 0.00 0.00 2.18
2339 2520 1.767759 ATGCAAGGCCTATTCACACC 58.232 50.000 5.16 0.00 0.00 4.16
2362 2543 8.798859 AATGTAGTACGACTCTAAAGGTTAGA 57.201 34.615 7.66 0.00 0.00 2.10
2371 2555 9.258826 GTCATTAGAGAATGTAGTACGACTCTA 57.741 37.037 18.36 18.36 42.71 2.43
2375 2559 6.941802 TCGTCATTAGAGAATGTAGTACGAC 58.058 40.000 0.00 0.00 40.63 4.34
2412 2596 9.559958 AAAACATCGAGAAAAGTTTATGCATAG 57.440 29.630 6.50 0.00 33.45 2.23
2413 2597 9.554724 GAAAACATCGAGAAAAGTTTATGCATA 57.445 29.630 1.16 1.16 33.45 3.14
2589 2773 3.731867 CGGCCAACAATATGCTTTCAGTC 60.732 47.826 2.24 0.00 0.00 3.51
2637 2821 4.221482 GGCTTTGTGATTCCCTTCTTTGAT 59.779 41.667 0.00 0.00 0.00 2.57
2674 2858 7.440198 TGAGAAACCAAATAAAATGCATCACA 58.560 30.769 0.00 0.00 0.00 3.58
2714 2898 1.242989 TTGCTATGCGTTCCAAAGCA 58.757 45.000 2.32 2.32 46.72 3.91
2763 2947 9.722056 GATTCAGCAATTATACTGTACAAAAGG 57.278 33.333 0.00 0.00 35.37 3.11
2817 3001 7.589587 CGCCGCACTTTAATATTGAAATATTGA 59.410 33.333 15.45 7.19 40.70 2.57
2947 3131 7.210873 AGCAAGACATTAAGGTACATACTAGC 58.789 38.462 0.00 0.00 0.00 3.42
2963 3147 4.219944 ACATTTGAGATGCAAGCAAGACAT 59.780 37.500 0.00 0.00 37.87 3.06
2977 3161 4.571984 CACAGACAGACAACACATTTGAGA 59.428 41.667 0.00 0.00 0.00 3.27
3007 3191 9.191479 TGGACAATAGAAGTTTGTTAAAAGGAA 57.809 29.630 0.00 0.00 37.43 3.36
3008 3192 8.754991 TGGACAATAGAAGTTTGTTAAAAGGA 57.245 30.769 0.00 0.00 37.43 3.36
3090 3280 2.921754 GCGCAAGAAGTACGACTAATGT 59.078 45.455 0.30 0.00 43.02 2.71
3411 3603 5.168569 TGAAAGCTGTAGGACAATAGTTCG 58.831 41.667 0.00 0.00 0.00 3.95
3422 3616 3.181493 GCACATCCATTGAAAGCTGTAGG 60.181 47.826 0.00 0.00 0.00 3.18
3428 3622 3.633525 TGGATAGCACATCCATTGAAAGC 59.366 43.478 14.32 0.00 42.81 3.51
3453 3647 2.122564 GCTGACAGCAAGCTTCAAAAC 58.877 47.619 22.62 0.00 41.89 2.43
3790 4015 5.248248 TGTTGGAAGTCAGGATCTGATTGTA 59.752 40.000 0.72 0.00 42.73 2.41
3810 4044 5.749596 TGTGTCCAGTTGACTAAATGTTG 57.250 39.130 0.00 0.00 44.75 3.33
3832 4066 8.934023 TTACTGATTTCACAAGGGAAATTACT 57.066 30.769 11.26 0.64 45.05 2.24
3965 4660 0.620556 CCACCACTACCAGAGGCAAT 59.379 55.000 0.00 0.00 28.12 3.56
3978 4673 0.606401 ATACAGCTGTGTGCCACCAC 60.606 55.000 29.57 0.00 44.23 4.16
4002 4697 4.883585 ACATTGTCAGACACATGAACAACT 59.116 37.500 22.34 5.95 33.90 3.16
4003 4698 5.173774 ACATTGTCAGACACATGAACAAC 57.826 39.130 22.34 0.00 33.90 3.32
4020 4726 7.975616 AGGCTATGTAAACATAAGCAAACATTG 59.024 33.333 18.01 0.00 38.26 2.82
4046 4752 5.983540 ACTTTTGGAATGTTTGCCAACTTA 58.016 33.333 2.01 0.00 43.40 2.24
4047 4753 4.842574 ACTTTTGGAATGTTTGCCAACTT 58.157 34.783 2.01 0.00 43.40 2.66
4053 4759 9.855021 ACACTATATTACTTTTGGAATGTTTGC 57.145 29.630 0.00 0.00 0.00 3.68
4107 4816 1.077429 GAGCCCACCAGTCCATTCC 60.077 63.158 0.00 0.00 0.00 3.01
4230 4943 5.084519 ACAGAACTACCACCACTCTGATAA 58.915 41.667 4.49 0.00 37.53 1.75
4342 5055 7.770366 TTCCTTTACCCTTTTTGTATCTTCC 57.230 36.000 0.00 0.00 0.00 3.46
4364 5077 8.746922 TTCAAGCATGATAATCAAACAGTTTC 57.253 30.769 0.00 0.00 34.96 2.78
4547 5260 6.957635 GTGCGAATGATACAGCATACATATTG 59.042 38.462 0.00 0.00 41.88 1.90
4558 5271 3.308053 CAGAACAGGTGCGAATGATACAG 59.692 47.826 0.00 0.00 0.00 2.74
4880 5593 1.000060 CACAGCTGGTTTGTTGGATGG 60.000 52.381 19.93 0.00 0.00 3.51
4909 5622 1.212935 GGTCAGGATTGGCACTGGTAT 59.787 52.381 4.04 0.00 35.47 2.73
4929 5642 2.673368 GACTGGAGAACCAAATAGCACG 59.327 50.000 0.00 0.00 46.32 5.34
5058 5771 4.453819 GTCAATGCTTGTGCTTTCTCTAGT 59.546 41.667 0.00 0.00 40.48 2.57
5248 5961 4.128925 TGCATGTTACAGAGAGATGACC 57.871 45.455 0.00 0.00 0.00 4.02
5249 5962 6.927936 ACATATGCATGTTACAGAGAGATGAC 59.072 38.462 10.16 0.00 42.98 3.06
5250 5963 7.059202 ACATATGCATGTTACAGAGAGATGA 57.941 36.000 10.16 0.00 42.98 2.92
5251 5964 7.869429 TGTACATATGCATGTTACAGAGAGATG 59.131 37.037 10.16 2.78 42.98 2.90
5268 5981 2.285220 GTCACTGCGGCTTGTACATATG 59.715 50.000 0.00 0.00 0.00 1.78
5272 5985 0.599991 CTGTCACTGCGGCTTGTACA 60.600 55.000 0.00 0.00 0.00 2.90
5342 6056 5.766670 ACATGTCTATATTGGAGGCATTGTG 59.233 40.000 0.00 0.00 37.14 3.33
5343 6057 5.945310 ACATGTCTATATTGGAGGCATTGT 58.055 37.500 0.00 0.00 37.14 2.71
5344 6058 8.045507 AGATACATGTCTATATTGGAGGCATTG 58.954 37.037 0.00 0.00 37.14 2.82
5345 6059 8.155620 AGATACATGTCTATATTGGAGGCATT 57.844 34.615 0.00 0.00 37.14 3.56
5346 6060 7.746243 AGATACATGTCTATATTGGAGGCAT 57.254 36.000 0.00 0.00 39.86 4.40
5390 6104 6.092748 AGGCTGAAAATGTAACTTTATTGCG 58.907 36.000 0.00 0.00 0.00 4.85
5429 6143 3.639094 GCCAGAGAGAGCAAGGAAGTATA 59.361 47.826 0.00 0.00 0.00 1.47
5430 6144 2.433970 GCCAGAGAGAGCAAGGAAGTAT 59.566 50.000 0.00 0.00 0.00 2.12
5431 6145 1.827969 GCCAGAGAGAGCAAGGAAGTA 59.172 52.381 0.00 0.00 0.00 2.24
5432 6146 0.612744 GCCAGAGAGAGCAAGGAAGT 59.387 55.000 0.00 0.00 0.00 3.01
5450 6167 1.514678 TTGGTCATGACTGCGGTTGC 61.515 55.000 24.50 6.66 43.20 4.17
5454 6171 1.197721 GAAACTTGGTCATGACTGCGG 59.802 52.381 24.50 14.40 0.00 5.69
5459 6176 2.218603 ACACCGAAACTTGGTCATGAC 58.781 47.619 17.91 17.91 37.72 3.06
5661 6612 2.095059 GCCTGAAAAGGTGTATGTGCAG 60.095 50.000 0.00 0.00 0.00 4.41
5754 6705 4.862641 ATACAGGGACTTTTGGCTACAT 57.137 40.909 0.00 0.00 34.60 2.29
5759 6710 6.377146 TGATTTTCTATACAGGGACTTTTGGC 59.623 38.462 0.00 0.00 34.60 4.52
5836 6787 2.431683 GGCTGTGCAGAGGGTGAA 59.568 61.111 13.44 0.00 0.00 3.18
5839 6790 3.325753 GAGGGCTGTGCAGAGGGT 61.326 66.667 13.44 0.00 0.00 4.34
5848 6799 2.681778 CGTGGAGGAGAGGGCTGT 60.682 66.667 0.00 0.00 0.00 4.40
5898 6849 3.489398 CGACTCCTCTCGTTCTTATTGGG 60.489 52.174 0.00 0.00 0.00 4.12
5921 6872 3.554342 CCCTGCCTCCAGATCCGG 61.554 72.222 0.00 0.00 41.77 5.14
5971 7043 2.703409 GTCGCGCTTACATGCAGG 59.297 61.111 5.56 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.