Multiple sequence alignment - TraesCS3B01G100500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G100500 chr3B 100.000 6219 0 0 1 6219 66872290 66878508 0.000000e+00 11485
1 TraesCS3B01G100500 chr3B 83.460 526 78 5 4703 5219 505267959 505268484 1.210000e-131 481
2 TraesCS3B01G100500 chr3B 81.046 612 94 17 1912 2517 505265019 505265614 9.440000e-128 468
3 TraesCS3B01G100500 chr3B 80.430 465 78 9 3649 4106 505266905 505267363 5.970000e-90 342
4 TraesCS3B01G100500 chr3B 77.043 575 92 25 1025 1595 505263842 505264380 1.700000e-75 294
5 TraesCS3B01G100500 chr3A 92.264 2611 139 20 3638 6219 55033825 55036401 0.000000e+00 3644
6 TraesCS3B01G100500 chr3A 87.136 2542 202 51 890 3375 55031158 55033630 0.000000e+00 2767
7 TraesCS3B01G100500 chr3A 89.670 455 34 8 2922 3375 54937919 54938361 9.050000e-158 568
8 TraesCS3B01G100500 chr3A 81.579 608 90 15 1915 2517 509540364 509540954 3.370000e-132 483
9 TraesCS3B01G100500 chr3A 83.270 526 79 5 4703 5219 509543215 509543740 5.640000e-130 475
10 TraesCS3B01G100500 chr3A 81.250 464 75 9 3649 4106 509542165 509542622 1.270000e-96 364
11 TraesCS3B01G100500 chr3A 76.910 576 92 28 1004 1575 509539240 509539778 7.890000e-74 289
12 TraesCS3B01G100500 chr3A 80.791 354 51 10 3013 3364 509541608 509541946 1.720000e-65 261
13 TraesCS3B01G100500 chr3A 87.081 209 21 3 3422 3625 54938356 54938563 1.350000e-56 231
14 TraesCS3B01G100500 chr3D 94.660 2191 79 13 4034 6219 43009277 43011434 0.000000e+00 3363
15 TraesCS3B01G100500 chr3D 88.322 2766 165 66 888 3625 43006295 43008930 0.000000e+00 3173
16 TraesCS3B01G100500 chr3D 95.031 644 21 2 1 644 43005263 43005895 0.000000e+00 1002
17 TraesCS3B01G100500 chr3D 84.291 522 73 5 4703 5215 388448335 388448856 9.310000e-138 501
18 TraesCS3B01G100500 chr3D 81.669 611 91 16 1912 2517 388445510 388446104 7.250000e-134 488
19 TraesCS3B01G100500 chr3D 81.290 465 74 11 3649 4106 388447282 388447740 1.270000e-96 364
20 TraesCS3B01G100500 chr3D 86.850 327 37 4 3643 3963 43008915 43009241 1.650000e-95 361
21 TraesCS3B01G100500 chr3D 77.003 574 93 26 1004 1572 388444386 388444925 6.100000e-75 292
22 TraesCS3B01G100500 chr3D 81.073 354 50 9 3013 3364 388446725 388447063 3.700000e-67 267
23 TraesCS3B01G100500 chr3D 91.597 119 8 2 832 950 43006167 43006283 4.990000e-36 163
24 TraesCS3B01G100500 chr4D 88.172 651 40 15 1382 2014 509552374 509553005 0.000000e+00 741
25 TraesCS3B01G100500 chr6B 87.404 651 49 11 1382 2014 139414010 139414645 0.000000e+00 717
26 TraesCS3B01G100500 chr6B 82.274 519 71 19 124 631 41311690 41311182 4.450000e-116 429
27 TraesCS3B01G100500 chr4B 86.943 651 52 9 1382 2014 488091670 488091035 0.000000e+00 701
28 TraesCS3B01G100500 chr4B 86.636 651 54 10 1382 2014 469360685 469360050 0.000000e+00 689
29 TraesCS3B01G100500 chr4B 86.329 651 56 12 1382 2014 365089701 365089066 0.000000e+00 678
30 TraesCS3B01G100500 chr5B 86.943 651 47 14 1382 2014 245728696 245729326 0.000000e+00 697
31 TraesCS3B01G100500 chr5B 86.830 653 51 11 1382 2014 327987335 327987972 0.000000e+00 697
32 TraesCS3B01G100500 chr1B 86.636 651 54 10 1382 2014 546249152 546249787 0.000000e+00 689
33 TraesCS3B01G100500 chr1B 82.752 516 66 23 124 630 260863178 260862677 7.400000e-119 438
34 TraesCS3B01G100500 chr1B 83.830 235 30 4 4370 4600 428108897 428109127 3.780000e-52 217
35 TraesCS3B01G100500 chr7D 82.718 515 72 15 124 627 360307019 360306511 5.720000e-120 442
36 TraesCS3B01G100500 chr7D 82.480 508 67 21 124 623 608800241 608800734 5.760000e-115 425
37 TraesCS3B01G100500 chr4A 82.685 514 67 22 124 629 370495627 370495128 2.660000e-118 436
38 TraesCS3B01G100500 chr2A 82.609 506 69 19 124 621 352802108 352801614 4.450000e-116 429
39 TraesCS3B01G100500 chr7B 82.387 511 70 18 124 626 335375518 335376016 1.600000e-115 427
40 TraesCS3B01G100500 chr5D 82.296 514 70 21 124 629 16741085 16740585 5.760000e-115 425
41 TraesCS3B01G100500 chr6A 80.357 448 82 5 4697 5138 148529795 148529348 9.990000e-88 335
42 TraesCS3B01G100500 chr6A 84.490 245 30 7 4361 4602 148530190 148529951 1.040000e-57 235
43 TraesCS3B01G100500 chr6A 80.392 306 53 4 3060 3364 148531350 148531051 6.270000e-55 226
44 TraesCS3B01G100500 chr1D 83.404 235 33 2 4370 4601 316010132 316010363 4.880000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G100500 chr3B 66872290 66878508 6218 False 11485.000000 11485 100.000000 1 6219 1 chr3B.!!$F1 6218
1 TraesCS3B01G100500 chr3B 505263842 505268484 4642 False 396.250000 481 80.494750 1025 5219 4 chr3B.!!$F2 4194
2 TraesCS3B01G100500 chr3A 55031158 55036401 5243 False 3205.500000 3644 89.700000 890 6219 2 chr3A.!!$F2 5329
3 TraesCS3B01G100500 chr3A 54937919 54938563 644 False 399.500000 568 88.375500 2922 3625 2 chr3A.!!$F1 703
4 TraesCS3B01G100500 chr3A 509539240 509543740 4500 False 374.400000 483 80.760000 1004 5219 5 chr3A.!!$F3 4215
5 TraesCS3B01G100500 chr3D 43005263 43011434 6171 False 1612.400000 3363 91.292000 1 6219 5 chr3D.!!$F1 6218
6 TraesCS3B01G100500 chr3D 388444386 388448856 4470 False 382.400000 501 81.065200 1004 5215 5 chr3D.!!$F2 4211
7 TraesCS3B01G100500 chr4D 509552374 509553005 631 False 741.000000 741 88.172000 1382 2014 1 chr4D.!!$F1 632
8 TraesCS3B01G100500 chr6B 139414010 139414645 635 False 717.000000 717 87.404000 1382 2014 1 chr6B.!!$F1 632
9 TraesCS3B01G100500 chr6B 41311182 41311690 508 True 429.000000 429 82.274000 124 631 1 chr6B.!!$R1 507
10 TraesCS3B01G100500 chr4B 488091035 488091670 635 True 701.000000 701 86.943000 1382 2014 1 chr4B.!!$R3 632
11 TraesCS3B01G100500 chr4B 469360050 469360685 635 True 689.000000 689 86.636000 1382 2014 1 chr4B.!!$R2 632
12 TraesCS3B01G100500 chr4B 365089066 365089701 635 True 678.000000 678 86.329000 1382 2014 1 chr4B.!!$R1 632
13 TraesCS3B01G100500 chr5B 245728696 245729326 630 False 697.000000 697 86.943000 1382 2014 1 chr5B.!!$F1 632
14 TraesCS3B01G100500 chr5B 327987335 327987972 637 False 697.000000 697 86.830000 1382 2014 1 chr5B.!!$F2 632
15 TraesCS3B01G100500 chr1B 546249152 546249787 635 False 689.000000 689 86.636000 1382 2014 1 chr1B.!!$F2 632
16 TraesCS3B01G100500 chr1B 260862677 260863178 501 True 438.000000 438 82.752000 124 630 1 chr1B.!!$R1 506
17 TraesCS3B01G100500 chr7D 360306511 360307019 508 True 442.000000 442 82.718000 124 627 1 chr7D.!!$R1 503
18 TraesCS3B01G100500 chr5D 16740585 16741085 500 True 425.000000 425 82.296000 124 629 1 chr5D.!!$R1 505
19 TraesCS3B01G100500 chr6A 148529348 148531350 2002 True 265.333333 335 81.746333 3060 5138 3 chr6A.!!$R1 2078

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 692 0.171903 CTCTTTCCTGCGGCAATTGG 59.828 55.000 7.72 1.79 0.00 3.16 F
1814 2405 0.040514 TCGTTGCTGTTCATTTGCGG 60.041 50.000 0.00 0.00 0.00 5.69 F
2245 2857 0.108472 CAGGAGAGCACGCTCAATGA 60.108 55.000 20.51 0.00 44.99 2.57 F
3379 4393 0.788391 GGTACGTGGCTTGTTCGAAG 59.212 55.000 0.00 0.00 0.00 3.79 F
3928 4978 1.295423 GAGGCAAGAGCGGTTACCA 59.705 57.895 1.13 0.00 43.41 3.25 F
3934 4984 2.423538 GCAAGAGCGGTTACCATGAATT 59.576 45.455 1.13 0.00 0.00 2.17 F
4842 6020 2.431683 GGCTGTGCAGAGGGTGAA 59.568 61.111 13.44 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2597 3210 1.683943 TGCAGATATGCAGGGCTTTC 58.316 50.000 11.76 0.00 40.23 2.62 R
3766 4810 0.809241 GCTCGAATCTGGGCAGACAG 60.809 60.000 0.00 0.00 40.75 3.51 R
4199 5255 4.504858 CCTCCTTGTGATTGTACTGGTAC 58.495 47.826 4.15 4.15 36.63 3.34 R
4388 5474 0.106335 CAAAAGGCATGTGCACCCAA 59.894 50.000 15.69 0.00 44.36 4.12 R
4842 6020 0.250513 GATCGGAGCTGTGGGTTCTT 59.749 55.000 0.00 0.00 0.00 2.52 R
5017 6195 0.251354 TCTGCTCCCTGATCTTGTGC 59.749 55.000 0.00 0.00 0.00 4.57 R
5749 6937 0.618458 TACCAGTGCCAATCCTGACC 59.382 55.000 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 7.280876 CCATGCTATTCAAAGCTACAAGAGTAA 59.719 37.037 0.00 0.00 43.19 2.24
141 142 8.976353 CATGACTATCATAGCCCTAGAGTATTT 58.024 37.037 0.00 0.00 34.28 1.40
284 287 4.159135 CCTCATTCTTTGTTCCCAAGATGG 59.841 45.833 0.00 0.00 37.25 3.51
501 506 7.986320 TGCAACATAAAAATATTCAGGGGAATG 59.014 33.333 0.41 0.00 43.47 2.67
522 527 7.856894 GGAATGTTGTCATTGGTTTTGAATTTG 59.143 33.333 0.00 0.00 43.33 2.32
526 531 8.233190 TGTTGTCATTGGTTTTGAATTTGTTTC 58.767 29.630 0.00 0.00 34.72 2.78
637 652 1.971167 CCCAGTTGGCGCTTGCTTA 60.971 57.895 7.64 0.00 39.13 3.09
644 659 4.210304 GCGCTTGCTTAGTCGCCG 62.210 66.667 0.00 0.00 40.85 6.46
645 660 2.809601 CGCTTGCTTAGTCGCCGT 60.810 61.111 0.00 0.00 0.00 5.68
646 661 2.789203 CGCTTGCTTAGTCGCCGTC 61.789 63.158 0.00 0.00 0.00 4.79
647 662 2.789203 GCTTGCTTAGTCGCCGTCG 61.789 63.158 0.00 0.00 0.00 5.12
648 663 2.789203 CTTGCTTAGTCGCCGTCGC 61.789 63.158 0.00 0.00 35.26 5.19
649 664 3.277211 TTGCTTAGTCGCCGTCGCT 62.277 57.895 0.00 0.00 35.26 4.93
650 665 2.506438 GCTTAGTCGCCGTCGCTT 60.506 61.111 0.00 0.00 35.26 4.68
651 666 2.506345 GCTTAGTCGCCGTCGCTTC 61.506 63.158 0.00 0.00 35.26 3.86
652 667 1.872679 CTTAGTCGCCGTCGCTTCC 60.873 63.158 0.00 0.00 35.26 3.46
653 668 3.672255 TTAGTCGCCGTCGCTTCCG 62.672 63.158 0.00 0.00 35.26 4.30
665 680 2.302478 GCTTCCGCGATCTCTTTCC 58.698 57.895 8.23 0.00 0.00 3.13
666 681 0.179097 GCTTCCGCGATCTCTTTCCT 60.179 55.000 8.23 0.00 0.00 3.36
667 682 1.565305 CTTCCGCGATCTCTTTCCTG 58.435 55.000 8.23 0.00 0.00 3.86
668 683 0.460284 TTCCGCGATCTCTTTCCTGC 60.460 55.000 8.23 0.00 0.00 4.85
669 684 2.233654 CCGCGATCTCTTTCCTGCG 61.234 63.158 8.23 0.00 44.68 5.18
670 685 2.233654 CGCGATCTCTTTCCTGCGG 61.234 63.158 0.00 0.00 41.69 5.69
671 686 2.529619 GCGATCTCTTTCCTGCGGC 61.530 63.158 0.00 0.00 0.00 6.53
672 687 1.153568 CGATCTCTTTCCTGCGGCA 60.154 57.895 1.29 1.29 0.00 5.69
673 688 0.740868 CGATCTCTTTCCTGCGGCAA 60.741 55.000 3.44 0.00 0.00 4.52
674 689 1.673168 GATCTCTTTCCTGCGGCAAT 58.327 50.000 3.44 0.00 0.00 3.56
675 690 2.019984 GATCTCTTTCCTGCGGCAATT 58.980 47.619 3.44 0.00 0.00 2.32
676 691 1.167851 TCTCTTTCCTGCGGCAATTG 58.832 50.000 3.44 0.00 0.00 2.32
677 692 0.171903 CTCTTTCCTGCGGCAATTGG 59.828 55.000 7.72 1.79 0.00 3.16
678 693 1.446618 CTTTCCTGCGGCAATTGGC 60.447 57.895 21.45 21.45 43.74 4.52
704 719 4.075793 CACGGGAGGGGAGAGGGA 62.076 72.222 0.00 0.00 0.00 4.20
705 720 3.756783 ACGGGAGGGGAGAGGGAG 61.757 72.222 0.00 0.00 0.00 4.30
706 721 4.548513 CGGGAGGGGAGAGGGAGG 62.549 77.778 0.00 0.00 0.00 4.30
707 722 3.036959 GGGAGGGGAGAGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
708 723 2.612251 GGAGGGGAGAGGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
709 724 2.612251 GAGGGGAGAGGGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
710 725 2.015726 GAGGGGAGAGGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
711 726 2.018086 AGGGGAGAGGGAGGAGGAG 61.018 68.421 0.00 0.00 0.00 3.69
712 727 2.123033 GGGAGAGGGAGGAGGAGC 60.123 72.222 0.00 0.00 0.00 4.70
713 728 2.693017 GGAGAGGGAGGAGGAGCA 59.307 66.667 0.00 0.00 0.00 4.26
714 729 1.235696 GGAGAGGGAGGAGGAGCAT 59.764 63.158 0.00 0.00 0.00 3.79
715 730 1.120795 GGAGAGGGAGGAGGAGCATG 61.121 65.000 0.00 0.00 0.00 4.06
716 731 1.074623 AGAGGGAGGAGGAGCATGG 60.075 63.158 0.00 0.00 0.00 3.66
717 732 2.771762 AGGGAGGAGGAGCATGGC 60.772 66.667 0.00 0.00 0.00 4.40
718 733 2.771762 GGGAGGAGGAGCATGGCT 60.772 66.667 0.00 0.00 43.88 4.75
719 734 2.381941 GGGAGGAGGAGCATGGCTT 61.382 63.158 0.00 0.00 39.88 4.35
720 735 1.148048 GGAGGAGGAGCATGGCTTC 59.852 63.158 0.00 0.00 39.88 3.86
721 736 1.148048 GAGGAGGAGCATGGCTTCC 59.852 63.158 0.00 1.54 39.88 3.46
722 737 2.194326 GGAGGAGCATGGCTTCCC 59.806 66.667 0.00 0.00 39.88 3.97
732 747 2.607811 TGGCTTCCCATCGATGTCT 58.392 52.632 23.27 0.00 35.79 3.41
733 748 0.911769 TGGCTTCCCATCGATGTCTT 59.088 50.000 23.27 0.00 35.79 3.01
734 749 1.281867 TGGCTTCCCATCGATGTCTTT 59.718 47.619 23.27 0.00 35.79 2.52
735 750 2.503765 TGGCTTCCCATCGATGTCTTTA 59.496 45.455 23.27 4.08 35.79 1.85
736 751 3.134458 GGCTTCCCATCGATGTCTTTAG 58.866 50.000 23.27 13.41 0.00 1.85
737 752 2.545946 GCTTCCCATCGATGTCTTTAGC 59.454 50.000 23.27 18.32 0.00 3.09
738 753 3.797039 CTTCCCATCGATGTCTTTAGCA 58.203 45.455 23.27 0.00 0.00 3.49
739 754 3.459232 TCCCATCGATGTCTTTAGCAG 57.541 47.619 23.27 5.22 0.00 4.24
740 755 2.103094 TCCCATCGATGTCTTTAGCAGG 59.897 50.000 23.27 13.74 0.00 4.85
741 756 1.869767 CCATCGATGTCTTTAGCAGGC 59.130 52.381 23.27 0.00 0.00 4.85
742 757 1.524355 CATCGATGTCTTTAGCAGGCG 59.476 52.381 17.50 0.00 0.00 5.52
743 758 0.806102 TCGATGTCTTTAGCAGGCGC 60.806 55.000 0.00 0.00 38.99 6.53
744 759 1.638467 GATGTCTTTAGCAGGCGCG 59.362 57.895 0.00 0.00 45.49 6.86
745 760 1.766143 GATGTCTTTAGCAGGCGCGG 61.766 60.000 8.83 0.00 45.49 6.46
746 761 3.865830 GTCTTTAGCAGGCGCGGC 61.866 66.667 27.06 27.06 45.49 6.53
778 793 2.844839 GCGGCTGGGGTAGGAGAT 60.845 66.667 0.00 0.00 0.00 2.75
779 794 3.142393 CGGCTGGGGTAGGAGATG 58.858 66.667 0.00 0.00 0.00 2.90
780 795 2.511452 CGGCTGGGGTAGGAGATGG 61.511 68.421 0.00 0.00 0.00 3.51
781 796 1.384643 GGCTGGGGTAGGAGATGGT 60.385 63.158 0.00 0.00 0.00 3.55
782 797 1.700042 GGCTGGGGTAGGAGATGGTG 61.700 65.000 0.00 0.00 0.00 4.17
783 798 0.983378 GCTGGGGTAGGAGATGGTGT 60.983 60.000 0.00 0.00 0.00 4.16
784 799 1.584724 CTGGGGTAGGAGATGGTGTT 58.415 55.000 0.00 0.00 0.00 3.32
785 800 1.916181 CTGGGGTAGGAGATGGTGTTT 59.084 52.381 0.00 0.00 0.00 2.83
786 801 2.308866 CTGGGGTAGGAGATGGTGTTTT 59.691 50.000 0.00 0.00 0.00 2.43
787 802 2.719705 TGGGGTAGGAGATGGTGTTTTT 59.280 45.455 0.00 0.00 0.00 1.94
816 831 2.295885 CCGAGACGGTGGTTATAGAGT 58.704 52.381 1.80 0.00 42.73 3.24
817 832 2.686915 CCGAGACGGTGGTTATAGAGTT 59.313 50.000 1.80 0.00 42.73 3.01
818 833 3.129988 CCGAGACGGTGGTTATAGAGTTT 59.870 47.826 1.80 0.00 42.73 2.66
819 834 4.381292 CCGAGACGGTGGTTATAGAGTTTT 60.381 45.833 1.80 0.00 42.73 2.43
820 835 5.166398 CGAGACGGTGGTTATAGAGTTTTT 58.834 41.667 0.00 0.00 0.00 1.94
871 970 6.503589 TTTTTAGGATCAAATACGGTGGTG 57.496 37.500 0.00 0.00 0.00 4.17
872 971 2.710096 AGGATCAAATACGGTGGTGG 57.290 50.000 0.00 0.00 0.00 4.61
873 972 1.211949 AGGATCAAATACGGTGGTGGG 59.788 52.381 0.00 0.00 0.00 4.61
874 973 1.675552 GATCAAATACGGTGGTGGGG 58.324 55.000 0.00 0.00 0.00 4.96
876 975 1.135068 TCAAATACGGTGGTGGGGGT 61.135 55.000 0.00 0.00 0.00 4.95
877 976 0.619505 CAAATACGGTGGTGGGGGTA 59.380 55.000 0.00 0.00 0.00 3.69
878 977 0.913924 AAATACGGTGGTGGGGGTAG 59.086 55.000 0.00 0.00 0.00 3.18
880 979 0.252835 ATACGGTGGTGGGGGTAGTT 60.253 55.000 0.00 0.00 0.00 2.24
881 980 1.193462 TACGGTGGTGGGGGTAGTTG 61.193 60.000 0.00 0.00 0.00 3.16
882 981 2.522367 CGGTGGTGGGGGTAGTTGT 61.522 63.158 0.00 0.00 0.00 3.32
888 987 1.134310 GGTGGGGGTAGTTGTAATCGG 60.134 57.143 0.00 0.00 0.00 4.18
931 1104 2.889045 CCAATATCAATCCAGGCCAGTG 59.111 50.000 5.01 0.00 0.00 3.66
988 1165 4.367023 CCAGCCCGACGGACGAAA 62.367 66.667 17.49 0.00 45.77 3.46
992 1169 2.125673 CCCGACGGACGAAAGCAT 60.126 61.111 17.49 0.00 45.77 3.79
1208 1390 1.359459 GCTCCGAGCCCTACAAAACG 61.359 60.000 9.42 0.00 34.48 3.60
1212 1394 0.165944 CGAGCCCTACAAAACGCTTG 59.834 55.000 0.00 0.00 0.00 4.01
1248 1432 1.202313 CGGTCTCTCATTCGAACTCCC 60.202 57.143 0.00 0.00 0.00 4.30
1275 1459 4.550831 CGCTTAATAATCGTTGTGCAGAGG 60.551 45.833 0.00 0.00 0.00 3.69
1319 1503 2.430244 CTTCGTCGTGTCCACCGG 60.430 66.667 0.00 0.00 0.00 5.28
1360 1544 1.834263 ACTCCATGAAGGTGGTAGAGC 59.166 52.381 0.00 0.00 40.27 4.09
1366 1550 1.476891 TGAAGGTGGTAGAGCGACATC 59.523 52.381 0.00 0.00 0.00 3.06
1400 1584 2.093106 TCCTCTGCTCGTAAGGTTCTC 58.907 52.381 0.00 0.00 38.47 2.87
1404 1588 2.231478 TCTGCTCGTAAGGTTCTCTTGG 59.769 50.000 0.00 0.00 36.93 3.61
1544 1732 2.038269 TTTGGGCTCGGCGATTCAC 61.038 57.895 11.27 7.38 0.00 3.18
1555 1746 3.967886 CGATTCACGCTACCAGGAT 57.032 52.632 0.00 0.00 34.51 3.24
1618 1816 0.525242 CGCTGTGTGGTGTGTTTTGG 60.525 55.000 0.00 0.00 0.00 3.28
1684 2273 0.957362 GGTTGCTGCAAAGAAGCTCT 59.043 50.000 17.80 0.00 41.42 4.09
1813 2404 1.967762 ATCGTTGCTGTTCATTTGCG 58.032 45.000 0.00 0.00 0.00 4.85
1814 2405 0.040514 TCGTTGCTGTTCATTTGCGG 60.041 50.000 0.00 0.00 0.00 5.69
1815 2406 0.317770 CGTTGCTGTTCATTTGCGGT 60.318 50.000 0.00 0.00 0.00 5.68
1873 2477 7.118245 GGTTCCAAGCATTATTTTTCTTCTTGG 59.882 37.037 10.83 10.83 46.20 3.61
1910 2518 6.012508 TCCTCATACCAAGTGATTCCTTTTCT 60.013 38.462 0.00 0.00 0.00 2.52
1911 2519 6.660949 CCTCATACCAAGTGATTCCTTTTCTT 59.339 38.462 0.00 0.00 0.00 2.52
1912 2520 7.177392 CCTCATACCAAGTGATTCCTTTTCTTT 59.823 37.037 0.00 0.00 0.00 2.52
1913 2521 8.110860 TCATACCAAGTGATTCCTTTTCTTTC 57.889 34.615 0.00 0.00 0.00 2.62
1914 2522 7.944554 TCATACCAAGTGATTCCTTTTCTTTCT 59.055 33.333 0.00 0.00 0.00 2.52
1915 2523 8.579863 CATACCAAGTGATTCCTTTTCTTTCTT 58.420 33.333 0.00 0.00 0.00 2.52
1950 2558 9.883142 ATATACCAGATATGAAAAAGCTCTAGC 57.117 33.333 0.00 0.00 42.49 3.42
1961 2569 1.904032 GCTCTAGCTCCTTGGCTGT 59.096 57.895 0.00 0.00 43.01 4.40
1975 2583 2.665165 TGGCTGTTGTCTTTGTGGAAT 58.335 42.857 0.00 0.00 0.00 3.01
2026 2634 9.550406 CTTTTACCAAGAATACCCGACATAATA 57.450 33.333 0.00 0.00 0.00 0.98
2032 2640 7.120726 CCAAGAATACCCGACATAATAAATCCC 59.879 40.741 0.00 0.00 0.00 3.85
2059 2667 5.486775 TCTGAATAATTTGGGGGATGCAAAA 59.513 36.000 0.00 0.00 0.00 2.44
2245 2857 0.108472 CAGGAGAGCACGCTCAATGA 60.108 55.000 20.51 0.00 44.99 2.57
2312 2924 9.524106 CATGTTAAAGATGGTACGTTCTGTATA 57.476 33.333 0.00 0.00 35.02 1.47
2325 2937 5.889853 ACGTTCTGTATATCCTGTCCAAGTA 59.110 40.000 0.00 0.00 0.00 2.24
2394 3006 5.872617 TGATAGTTTGGTTACATCTGGTTCG 59.127 40.000 0.00 0.00 0.00 3.95
2398 3010 5.046159 AGTTTGGTTACATCTGGTTCGGATA 60.046 40.000 0.00 0.00 0.00 2.59
2527 3139 4.927049 TGCTCCTGAGAAATTTCCATCTT 58.073 39.130 14.61 0.00 0.00 2.40
2558 3171 5.827267 TCAAGAAATTCATGAGTCAACACCA 59.173 36.000 0.00 0.00 0.00 4.17
2560 3173 6.906157 AGAAATTCATGAGTCAACACCATT 57.094 33.333 0.00 0.00 0.00 3.16
2561 3174 6.684686 AGAAATTCATGAGTCAACACCATTG 58.315 36.000 0.00 0.00 0.00 2.82
2562 3175 6.491062 AGAAATTCATGAGTCAACACCATTGA 59.509 34.615 0.00 0.00 0.00 2.57
2563 3176 6.653526 AATTCATGAGTCAACACCATTGAA 57.346 33.333 0.00 0.95 0.00 2.69
2564 3177 6.653526 ATTCATGAGTCAACACCATTGAAA 57.346 33.333 0.00 0.00 0.00 2.69
2565 3178 5.437289 TCATGAGTCAACACCATTGAAAC 57.563 39.130 0.00 0.00 0.00 2.78
2566 3179 4.278170 TCATGAGTCAACACCATTGAAACC 59.722 41.667 0.00 0.00 0.00 3.27
2567 3180 3.897239 TGAGTCAACACCATTGAAACCT 58.103 40.909 0.00 0.00 0.00 3.50
2568 3181 3.631686 TGAGTCAACACCATTGAAACCTG 59.368 43.478 0.00 0.00 0.00 4.00
2569 3182 2.362077 AGTCAACACCATTGAAACCTGC 59.638 45.455 0.00 0.00 0.00 4.85
2570 3183 2.100584 GTCAACACCATTGAAACCTGCA 59.899 45.455 0.00 0.00 0.00 4.41
2571 3184 2.964464 TCAACACCATTGAAACCTGCAT 59.036 40.909 0.00 0.00 0.00 3.96
2572 3185 4.022416 GTCAACACCATTGAAACCTGCATA 60.022 41.667 0.00 0.00 0.00 3.14
2573 3186 4.771577 TCAACACCATTGAAACCTGCATAT 59.228 37.500 0.00 0.00 0.00 1.78
2574 3187 4.989279 ACACCATTGAAACCTGCATATC 57.011 40.909 0.00 0.00 0.00 1.63
2575 3188 4.603131 ACACCATTGAAACCTGCATATCT 58.397 39.130 0.00 0.00 0.00 1.98
2576 3189 4.400251 ACACCATTGAAACCTGCATATCTG 59.600 41.667 0.00 0.00 0.00 2.90
2597 3210 3.323403 TGCAAAAAGGTTTATGTCCCCAG 59.677 43.478 0.00 0.00 0.00 4.45
2797 3665 5.885230 TTTTGCCACTGACTATTCATGAG 57.115 39.130 0.00 0.00 0.00 2.90
2862 3730 2.104792 TGCTGAGTTGGTTCAGTTAGCT 59.895 45.455 5.08 0.00 45.07 3.32
2987 3903 4.569943 TGCTCCTGTTTTGTGACTAGATC 58.430 43.478 0.00 0.00 0.00 2.75
3066 4069 2.432456 CCGCTGACGCTGCTAACA 60.432 61.111 0.00 0.00 38.22 2.41
3103 4107 2.094494 TCAGCGCTTGACTAAGAAGGAG 60.094 50.000 7.50 0.00 35.92 3.69
3141 4145 3.305950 CGCCATTTTGAATTGGAAGACCA 60.306 43.478 8.44 0.00 45.34 4.02
3189 4196 3.273434 TGATGATGTTAGCTTGCAGTCC 58.727 45.455 0.00 0.00 0.00 3.85
3190 4197 2.857186 TGATGTTAGCTTGCAGTCCA 57.143 45.000 0.00 0.00 0.00 4.02
3191 4198 3.354948 TGATGTTAGCTTGCAGTCCAT 57.645 42.857 0.00 0.00 0.00 3.41
3193 4200 4.842574 TGATGTTAGCTTGCAGTCCATTA 58.157 39.130 0.00 0.00 0.00 1.90
3194 4201 5.439721 TGATGTTAGCTTGCAGTCCATTAT 58.560 37.500 0.00 0.00 0.00 1.28
3195 4202 5.528690 TGATGTTAGCTTGCAGTCCATTATC 59.471 40.000 0.00 0.00 0.00 1.75
3198 4205 5.355071 TGTTAGCTTGCAGTCCATTATCAAG 59.645 40.000 0.00 0.00 37.70 3.02
3199 4206 3.960571 AGCTTGCAGTCCATTATCAAGT 58.039 40.909 0.00 0.00 37.17 3.16
3200 4207 4.338879 AGCTTGCAGTCCATTATCAAGTT 58.661 39.130 0.00 0.00 37.17 2.66
3201 4208 4.157289 AGCTTGCAGTCCATTATCAAGTTG 59.843 41.667 0.00 0.00 37.17 3.16
3202 4209 4.676196 GCTTGCAGTCCATTATCAAGTTGG 60.676 45.833 2.34 0.00 37.17 3.77
3203 4210 4.032960 TGCAGTCCATTATCAAGTTGGT 57.967 40.909 2.34 0.00 0.00 3.67
3204 4211 3.758023 TGCAGTCCATTATCAAGTTGGTG 59.242 43.478 2.34 0.00 0.00 4.17
3205 4212 4.009675 GCAGTCCATTATCAAGTTGGTGA 58.990 43.478 2.34 0.00 0.00 4.02
3206 4213 4.142600 GCAGTCCATTATCAAGTTGGTGAC 60.143 45.833 2.34 0.00 0.00 3.67
3207 4214 4.093408 CAGTCCATTATCAAGTTGGTGACG 59.907 45.833 2.34 0.00 0.00 4.35
3208 4215 3.006940 TCCATTATCAAGTTGGTGACGC 58.993 45.455 2.34 0.00 0.00 5.19
3209 4216 3.009723 CCATTATCAAGTTGGTGACGCT 58.990 45.455 2.34 0.00 0.00 5.07
3210 4217 3.440173 CCATTATCAAGTTGGTGACGCTT 59.560 43.478 2.34 0.00 0.00 4.68
3213 4220 1.021202 TCAAGTTGGTGACGCTTTGG 58.979 50.000 2.34 0.00 0.00 3.28
3214 4221 1.021202 CAAGTTGGTGACGCTTTGGA 58.979 50.000 0.00 0.00 0.00 3.53
3279 4293 5.808540 CCATTATCAAGTTGGTGATGCTTTG 59.191 40.000 13.97 0.00 38.69 2.77
3315 4329 5.181748 AGTCAGAATCCATCAGCTGTTAAC 58.818 41.667 14.67 0.00 0.00 2.01
3377 4391 4.659480 GGTACGTGGCTTGTTCGA 57.341 55.556 0.00 0.00 0.00 3.71
3378 4392 2.903284 GGTACGTGGCTTGTTCGAA 58.097 52.632 0.00 0.00 0.00 3.71
3379 4393 0.788391 GGTACGTGGCTTGTTCGAAG 59.212 55.000 0.00 0.00 0.00 3.79
3380 4394 1.603678 GGTACGTGGCTTGTTCGAAGA 60.604 52.381 0.00 0.00 0.00 2.87
3381 4395 2.129607 GTACGTGGCTTGTTCGAAGAA 58.870 47.619 7.58 7.58 45.90 2.52
3382 4396 1.658994 ACGTGGCTTGTTCGAAGAAA 58.341 45.000 9.21 1.35 45.90 2.52
3383 4397 2.011222 ACGTGGCTTGTTCGAAGAAAA 58.989 42.857 9.21 0.00 45.90 2.29
3384 4398 2.223180 ACGTGGCTTGTTCGAAGAAAAC 60.223 45.455 9.21 7.06 45.90 2.43
3385 4399 2.223157 CGTGGCTTGTTCGAAGAAAACA 60.223 45.455 9.21 8.00 45.90 2.83
3386 4400 3.363178 GTGGCTTGTTCGAAGAAAACAG 58.637 45.455 9.21 0.00 45.90 3.16
3387 4401 3.013921 TGGCTTGTTCGAAGAAAACAGT 58.986 40.909 9.21 0.00 45.90 3.55
3388 4402 4.034742 GTGGCTTGTTCGAAGAAAACAGTA 59.965 41.667 9.21 0.00 45.90 2.74
3389 4403 4.819630 TGGCTTGTTCGAAGAAAACAGTAT 59.180 37.500 9.21 0.00 45.90 2.12
3390 4404 5.147162 GGCTTGTTCGAAGAAAACAGTATG 58.853 41.667 9.21 0.00 45.90 2.39
3442 4461 7.662897 TGAGTTTCTTGTACCTTTGTGTTTTT 58.337 30.769 0.00 0.00 0.00 1.94
3489 4508 4.566004 TGGTATCTCGACACTTTTCCTTG 58.434 43.478 0.00 0.00 0.00 3.61
3491 4510 2.910688 TCTCGACACTTTTCCTTGCT 57.089 45.000 0.00 0.00 0.00 3.91
3535 4564 7.776933 TGTTGCAAAATTAAATACAACTGCA 57.223 28.000 0.00 0.00 38.50 4.41
3543 4572 1.993956 AATACAACTGCACCTTGCCA 58.006 45.000 0.00 0.00 44.23 4.92
3585 4617 7.039853 TGAGCTATTCATCATGGTTTGAACAAA 60.040 33.333 8.25 0.00 38.03 2.83
3618 4652 4.903045 TTTCCTTTCTCGAACCTATGGT 57.097 40.909 0.00 0.00 37.65 3.55
3632 4666 6.478512 AACCTATGGTTCATTGTTGTTGTT 57.521 33.333 0.00 0.00 43.05 2.83
3633 4667 5.841810 ACCTATGGTTCATTGTTGTTGTTG 58.158 37.500 0.00 0.00 27.29 3.33
3634 4668 5.362430 ACCTATGGTTCATTGTTGTTGTTGT 59.638 36.000 0.00 0.00 27.29 3.32
3635 4669 6.127196 ACCTATGGTTCATTGTTGTTGTTGTT 60.127 34.615 0.00 0.00 27.29 2.83
3636 4670 6.200665 CCTATGGTTCATTGTTGTTGTTGTTG 59.799 38.462 0.00 0.00 0.00 3.33
3639 4673 6.455647 TGGTTCATTGTTGTTGTTGTTGTTA 58.544 32.000 0.00 0.00 0.00 2.41
3674 4713 9.758651 ATGGTTCTTGAGTTTACCAATAAAAAC 57.241 29.630 0.00 0.00 43.35 2.43
3676 4715 7.916977 GGTTCTTGAGTTTACCAATAAAAACGT 59.083 33.333 0.00 0.00 39.90 3.99
3689 4729 6.206048 CCAATAAAAACGTGGGAAACTAGAGT 59.794 38.462 0.00 0.00 0.00 3.24
3734 4776 3.076621 TCAATCAGTCATCCAGTTGCAC 58.923 45.455 0.00 0.00 0.00 4.57
3739 4781 5.675684 TCAGTCATCCAGTTGCACTTATA 57.324 39.130 0.00 0.00 0.00 0.98
3766 4810 7.704271 ACCTAACTAAAGCAGAAACTGTTTTC 58.296 34.615 14.57 0.00 42.25 2.29
3802 4851 2.820845 GCAAAGGGCGGGGATAAAT 58.179 52.632 0.00 0.00 0.00 1.40
3803 4852 1.989706 GCAAAGGGCGGGGATAAATA 58.010 50.000 0.00 0.00 0.00 1.40
3812 4861 4.403734 GGCGGGGATAAATATTCCAAAGA 58.596 43.478 0.27 0.00 32.62 2.52
3921 4971 3.743396 GGTATTTCTATGAGGCAAGAGCG 59.257 47.826 0.00 0.00 43.41 5.03
3928 4978 1.295423 GAGGCAAGAGCGGTTACCA 59.705 57.895 1.13 0.00 43.41 3.25
3934 4984 2.423538 GCAAGAGCGGTTACCATGAATT 59.576 45.455 1.13 0.00 0.00 2.17
3971 5022 6.319141 ACCTCTTTTCTAGTTGTTTGATGC 57.681 37.500 0.00 0.00 0.00 3.91
3972 5023 5.241728 ACCTCTTTTCTAGTTGTTTGATGCC 59.758 40.000 0.00 0.00 0.00 4.40
3973 5024 5.241506 CCTCTTTTCTAGTTGTTTGATGCCA 59.758 40.000 0.00 0.00 0.00 4.92
3974 5025 6.072112 TCTTTTCTAGTTGTTTGATGCCAC 57.928 37.500 0.00 0.00 0.00 5.01
3976 5027 5.437289 TTTCTAGTTGTTTGATGCCACTG 57.563 39.130 0.00 0.00 0.00 3.66
3977 5028 4.350368 TCTAGTTGTTTGATGCCACTGA 57.650 40.909 0.00 0.00 0.00 3.41
3978 5029 4.910195 TCTAGTTGTTTGATGCCACTGAT 58.090 39.130 0.00 0.00 0.00 2.90
3979 5030 6.048732 TCTAGTTGTTTGATGCCACTGATA 57.951 37.500 0.00 0.00 0.00 2.15
3982 5033 4.641989 AGTTGTTTGATGCCACTGATATCC 59.358 41.667 0.00 0.00 0.00 2.59
4199 5255 3.102972 TCCTGAAGGAAGAGATGACCTG 58.897 50.000 0.00 0.00 42.18 4.00
4246 5302 5.342791 GTCGAACTGTTCTAGAAGTAAGTGC 59.657 44.000 17.60 7.94 0.00 4.40
4250 5306 6.896021 ACTGTTCTAGAAGTAAGTGCTGTA 57.104 37.500 5.12 0.00 0.00 2.74
4270 5326 7.550551 TGCTGTATTTACTGAAGATCTCCTTTG 59.449 37.037 0.00 0.00 34.68 2.77
4274 5330 7.951347 ATTTACTGAAGATCTCCTTTGCAAT 57.049 32.000 0.00 0.00 34.68 3.56
4329 5403 5.186256 TGCCAATAGGGTATTGTCTTTGA 57.814 39.130 6.05 0.00 43.05 2.69
4454 5540 6.702723 CACCATTGAAGAAAAGAGCATTTTCA 59.297 34.615 21.90 8.03 40.01 2.69
4707 5882 2.703409 GTCGCGCTTACATGCAGG 59.297 61.111 5.56 0.00 0.00 4.85
4757 5935 3.554342 CCCTGCCTCCAGATCCGG 61.554 72.222 0.00 0.00 41.77 5.14
4780 5958 3.489398 CGACTCCTCTCGTTCTTATTGGG 60.489 52.174 0.00 0.00 0.00 4.12
4830 6008 2.681778 CGTGGAGGAGAGGGCTGT 60.682 66.667 0.00 0.00 0.00 4.40
4842 6020 2.431683 GGCTGTGCAGAGGGTGAA 59.568 61.111 13.44 0.00 0.00 3.18
4919 6097 6.377146 TGATTTTCTATACAGGGACTTTTGGC 59.623 38.462 0.00 0.00 34.60 4.52
5017 6195 2.095059 GCCTGAAAAGGTGTATGTGCAG 60.095 50.000 0.00 0.00 0.00 4.41
5219 6406 2.218603 ACACCGAAACTTGGTCATGAC 58.781 47.619 17.91 17.91 37.72 3.06
5224 6411 1.197721 GAAACTTGGTCATGACTGCGG 59.802 52.381 24.50 14.40 0.00 5.69
5228 6415 1.514678 TTGGTCATGACTGCGGTTGC 61.515 55.000 24.50 6.66 43.20 4.17
5248 6435 2.433970 GCCAGAGAGAGCAAGGAAGTAT 59.566 50.000 0.00 0.00 0.00 2.12
5249 6436 3.639094 GCCAGAGAGAGCAAGGAAGTATA 59.361 47.826 0.00 0.00 0.00 1.47
5288 6475 6.092748 AGGCTGAAAATGTAACTTTATTGCG 58.907 36.000 0.00 0.00 0.00 4.85
5332 6519 7.746243 AGATACATGTCTATATTGGAGGCAT 57.254 36.000 0.00 0.00 39.86 4.40
5333 6520 8.155620 AGATACATGTCTATATTGGAGGCATT 57.844 34.615 0.00 0.00 37.14 3.56
5334 6521 8.045507 AGATACATGTCTATATTGGAGGCATTG 58.954 37.037 0.00 0.00 37.14 2.82
5335 6522 5.945310 ACATGTCTATATTGGAGGCATTGT 58.055 37.500 0.00 0.00 37.14 2.71
5336 6523 5.766670 ACATGTCTATATTGGAGGCATTGTG 59.233 40.000 0.00 0.00 37.14 3.33
5406 6594 0.599991 CTGTCACTGCGGCTTGTACA 60.600 55.000 0.00 0.00 0.00 2.90
5410 6598 2.285220 GTCACTGCGGCTTGTACATATG 59.715 50.000 0.00 0.00 0.00 1.78
5427 6615 7.869429 TGTACATATGCATGTTACAGAGAGATG 59.131 37.037 10.16 2.78 42.98 2.90
5620 6808 4.453819 GTCAATGCTTGTGCTTTCTCTAGT 59.546 41.667 0.00 0.00 40.48 2.57
5660 6848 3.817709 TGATCACTCACTGTGTTCACA 57.182 42.857 7.79 5.52 45.24 3.58
5749 6937 2.673368 GACTGGAGAACCAAATAGCACG 59.327 50.000 0.00 0.00 46.32 5.34
5769 6957 1.212935 GGTCAGGATTGGCACTGGTAT 59.787 52.381 4.04 0.00 35.47 2.73
5798 6986 1.000060 CACAGCTGGTTTGTTGGATGG 60.000 52.381 19.93 0.00 0.00 3.51
6120 7308 3.308053 CAGAACAGGTGCGAATGATACAG 59.692 47.826 0.00 0.00 0.00 2.74
6131 7319 6.957635 GTGCGAATGATACAGCATACATATTG 59.042 38.462 0.00 0.00 41.88 1.90
6205 7393 7.114811 CACAACTTTTATTGCGAAAATGCTAGT 59.885 33.333 0.00 0.00 35.36 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 6.819146 ACCTTACTCTTGTAGCTTTGAATAGC 59.181 38.462 0.00 0.00 41.53 2.97
84 85 7.907214 AATACACCTTACTCTTGTAGCTTTG 57.093 36.000 0.00 0.00 0.00 2.77
141 142 6.147821 GCTCACTGAAGCAACTATTTACAAGA 59.852 38.462 0.00 0.00 42.05 3.02
501 506 8.233190 TGAAACAAATTCAAAACCAATGACAAC 58.767 29.630 0.00 0.00 44.94 3.32
522 527 8.825745 TCTTTTGCCACTAATTTCAAATGAAAC 58.174 29.630 10.54 0.00 45.55 2.78
648 663 1.565305 CAGGAAAGAGATCGCGGAAG 58.435 55.000 6.13 0.00 0.00 3.46
649 664 0.460284 GCAGGAAAGAGATCGCGGAA 60.460 55.000 6.13 0.00 0.00 4.30
650 665 1.141881 GCAGGAAAGAGATCGCGGA 59.858 57.895 6.13 0.00 0.00 5.54
651 666 2.233654 CGCAGGAAAGAGATCGCGG 61.234 63.158 6.13 0.00 39.09 6.46
652 667 3.303605 CGCAGGAAAGAGATCGCG 58.696 61.111 0.00 0.00 36.47 5.87
665 680 4.781959 CGGTGCCAATTGCCGCAG 62.782 66.667 9.32 0.00 38.99 5.18
687 702 4.075793 TCCCTCTCCCCTCCCGTG 62.076 72.222 0.00 0.00 0.00 4.94
688 703 3.756783 CTCCCTCTCCCCTCCCGT 61.757 72.222 0.00 0.00 0.00 5.28
689 704 4.548513 CCTCCCTCTCCCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
690 705 3.036959 TCCTCCCTCTCCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
691 706 2.612251 CTCCTCCCTCTCCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
692 707 2.015726 TCCTCCTCCCTCTCCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
693 708 2.018086 CTCCTCCTCCCTCTCCCCT 61.018 68.421 0.00 0.00 0.00 4.79
694 709 2.612251 CTCCTCCTCCCTCTCCCC 59.388 72.222 0.00 0.00 0.00 4.81
695 710 2.123033 GCTCCTCCTCCCTCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
696 711 1.120795 CATGCTCCTCCTCCCTCTCC 61.121 65.000 0.00 0.00 0.00 3.71
697 712 1.120795 CCATGCTCCTCCTCCCTCTC 61.121 65.000 0.00 0.00 0.00 3.20
698 713 1.074623 CCATGCTCCTCCTCCCTCT 60.075 63.158 0.00 0.00 0.00 3.69
699 714 2.817056 GCCATGCTCCTCCTCCCTC 61.817 68.421 0.00 0.00 0.00 4.30
700 715 2.771762 GCCATGCTCCTCCTCCCT 60.772 66.667 0.00 0.00 0.00 4.20
701 716 2.336484 GAAGCCATGCTCCTCCTCCC 62.336 65.000 0.00 0.00 38.25 4.30
702 717 1.148048 GAAGCCATGCTCCTCCTCC 59.852 63.158 0.00 0.00 38.25 4.30
703 718 1.148048 GGAAGCCATGCTCCTCCTC 59.852 63.158 0.57 0.00 38.25 3.71
704 719 2.381941 GGGAAGCCATGCTCCTCCT 61.382 63.158 6.74 0.00 38.25 3.69
705 720 2.004408 ATGGGAAGCCATGCTCCTCC 62.004 60.000 0.00 0.00 38.25 4.30
706 721 0.536915 GATGGGAAGCCATGCTCCTC 60.537 60.000 0.00 0.00 38.25 3.71
707 722 1.535685 GATGGGAAGCCATGCTCCT 59.464 57.895 0.00 0.00 38.25 3.69
708 723 1.895707 CGATGGGAAGCCATGCTCC 60.896 63.158 0.00 0.00 38.25 4.70
709 724 0.250640 ATCGATGGGAAGCCATGCTC 60.251 55.000 0.00 0.00 38.25 4.26
710 725 0.536687 CATCGATGGGAAGCCATGCT 60.537 55.000 17.96 0.00 42.56 3.79
711 726 0.820891 ACATCGATGGGAAGCCATGC 60.821 55.000 28.09 0.00 0.00 4.06
712 727 1.202734 AGACATCGATGGGAAGCCATG 60.203 52.381 28.09 1.94 0.00 3.66
713 728 1.135094 AGACATCGATGGGAAGCCAT 58.865 50.000 28.09 5.46 0.00 4.40
714 729 0.911769 AAGACATCGATGGGAAGCCA 59.088 50.000 28.09 0.00 0.00 4.75
715 730 2.044123 AAAGACATCGATGGGAAGCC 57.956 50.000 28.09 10.38 0.00 4.35
716 731 2.545946 GCTAAAGACATCGATGGGAAGC 59.454 50.000 28.09 22.29 0.00 3.86
717 732 3.797039 TGCTAAAGACATCGATGGGAAG 58.203 45.455 28.09 17.58 0.00 3.46
718 733 3.432186 CCTGCTAAAGACATCGATGGGAA 60.432 47.826 28.09 8.83 0.00 3.97
719 734 2.103094 CCTGCTAAAGACATCGATGGGA 59.897 50.000 28.09 10.31 0.00 4.37
720 735 2.487934 CCTGCTAAAGACATCGATGGG 58.512 52.381 28.09 12.92 0.00 4.00
721 736 1.869767 GCCTGCTAAAGACATCGATGG 59.130 52.381 28.09 11.11 0.00 3.51
722 737 1.524355 CGCCTGCTAAAGACATCGATG 59.476 52.381 23.68 23.68 0.00 3.84
723 738 1.858091 CGCCTGCTAAAGACATCGAT 58.142 50.000 0.00 0.00 0.00 3.59
724 739 0.806102 GCGCCTGCTAAAGACATCGA 60.806 55.000 0.00 0.00 38.39 3.59
725 740 1.638467 GCGCCTGCTAAAGACATCG 59.362 57.895 0.00 0.00 38.39 3.84
726 741 1.638467 CGCGCCTGCTAAAGACATC 59.362 57.895 0.00 0.00 39.65 3.06
727 742 1.815421 CCGCGCCTGCTAAAGACAT 60.815 57.895 0.00 0.00 39.65 3.06
728 743 2.434185 CCGCGCCTGCTAAAGACA 60.434 61.111 0.00 0.00 39.65 3.41
729 744 3.865830 GCCGCGCCTGCTAAAGAC 61.866 66.667 0.00 0.00 39.65 3.01
761 776 2.844839 ATCTCCTACCCCAGCCGC 60.845 66.667 0.00 0.00 0.00 6.53
762 777 2.511452 CCATCTCCTACCCCAGCCG 61.511 68.421 0.00 0.00 0.00 5.52
763 778 1.384643 ACCATCTCCTACCCCAGCC 60.385 63.158 0.00 0.00 0.00 4.85
764 779 0.983378 ACACCATCTCCTACCCCAGC 60.983 60.000 0.00 0.00 0.00 4.85
765 780 1.584724 AACACCATCTCCTACCCCAG 58.415 55.000 0.00 0.00 0.00 4.45
766 781 2.053747 AAACACCATCTCCTACCCCA 57.946 50.000 0.00 0.00 0.00 4.96
767 782 3.451402 AAAAACACCATCTCCTACCCC 57.549 47.619 0.00 0.00 0.00 4.95
797 812 4.367386 AAACTCTATAACCACCGTCTCG 57.633 45.455 0.00 0.00 0.00 4.04
871 970 0.179037 GGCCGATTACAACTACCCCC 60.179 60.000 0.00 0.00 0.00 5.40
872 971 0.542805 TGGCCGATTACAACTACCCC 59.457 55.000 0.00 0.00 0.00 4.95
873 972 1.208776 ACTGGCCGATTACAACTACCC 59.791 52.381 0.00 0.00 0.00 3.69
874 973 2.277084 CACTGGCCGATTACAACTACC 58.723 52.381 0.00 0.00 0.00 3.18
876 975 1.737696 CGCACTGGCCGATTACAACTA 60.738 52.381 0.00 0.00 36.38 2.24
877 976 1.019278 CGCACTGGCCGATTACAACT 61.019 55.000 0.00 0.00 36.38 3.16
878 977 1.017177 TCGCACTGGCCGATTACAAC 61.017 55.000 0.00 0.00 36.38 3.32
880 979 1.153647 CTCGCACTGGCCGATTACA 60.154 57.895 0.00 0.00 36.38 2.41
881 980 0.872021 CTCTCGCACTGGCCGATTAC 60.872 60.000 0.00 0.00 36.38 1.89
882 981 1.437573 CTCTCGCACTGGCCGATTA 59.562 57.895 0.00 0.00 36.38 1.75
988 1165 1.153289 GCGACATGACAGGGATGCT 60.153 57.895 0.00 0.00 0.00 3.79
992 1169 2.994995 ACGGCGACATGACAGGGA 60.995 61.111 16.62 0.00 0.00 4.20
1146 1323 1.741770 GTCCATGGACAGGACGTGC 60.742 63.158 35.21 8.67 45.35 5.34
1155 1332 0.741221 GGTCGAAGCTGTCCATGGAC 60.741 60.000 33.97 33.97 44.77 4.02
1248 1432 4.201773 TGCACAACGATTATTAAGCGGAAG 60.202 41.667 17.30 9.34 45.98 3.46
1275 1459 3.804193 CTTTCTCCCGGCAAGCGC 61.804 66.667 0.00 0.00 37.44 5.92
1366 1550 1.998315 CAGAGGAACTGCATCTCAACG 59.002 52.381 0.00 0.00 41.55 4.10
1400 1584 5.702670 TCTCAATTAGCAGAACAGAACCAAG 59.297 40.000 0.00 0.00 0.00 3.61
1404 1588 8.078596 ACAAAATCTCAATTAGCAGAACAGAAC 58.921 33.333 0.00 0.00 0.00 3.01
1544 1732 3.312421 CCAACATTGTAATCCTGGTAGCG 59.688 47.826 0.00 0.00 0.00 4.26
1555 1746 7.676004 TCATAGTCAGAAGACCAACATTGTAA 58.324 34.615 0.00 0.00 46.15 2.41
1827 2422 5.329035 ACCACAACAGATATGGAATTTGC 57.671 39.130 0.00 0.00 36.94 3.68
1840 2435 4.789012 ATAATGCTTGGAACCACAACAG 57.211 40.909 0.00 0.00 0.00 3.16
1924 2532 9.883142 GCTAGAGCTTTTTCATATCTGGTATAT 57.117 33.333 0.00 0.00 38.21 0.86
1950 2558 2.033801 CACAAAGACAACAGCCAAGGAG 59.966 50.000 0.00 0.00 0.00 3.69
1975 2583 4.062293 ACGGATTTGTTCGATTCAGTGAA 58.938 39.130 8.27 8.27 0.00 3.18
2032 2640 5.070714 TGCATCCCCCAAATTATTCAGATTG 59.929 40.000 0.00 0.00 0.00 2.67
2059 2667 7.094720 CGGAAGAGTAATATATGACTTCGACCT 60.095 40.741 4.11 0.00 35.90 3.85
2148 2759 9.277565 GATATTACACAACAGCTTACATGTTTG 57.722 33.333 2.30 3.71 38.80 2.93
2245 2857 5.514500 TTATGGAACTTTAGAGCAGGGTT 57.486 39.130 0.00 0.00 0.00 4.11
2371 2983 5.293569 CCGAACCAGATGTAACCAAACTATC 59.706 44.000 0.00 0.00 0.00 2.08
2394 3006 9.160496 CTCATATTTAGAACTGCTGGATTATCC 57.840 37.037 3.91 3.91 36.96 2.59
2479 3091 8.922058 AATACTACATTCAGTAACCTAACACG 57.078 34.615 0.00 0.00 34.77 4.49
2549 3162 2.100584 TGCAGGTTTCAATGGTGTTGAC 59.899 45.455 0.00 0.00 0.00 3.18
2551 3164 2.886862 TGCAGGTTTCAATGGTGTTG 57.113 45.000 0.00 0.00 0.00 3.33
2552 3165 5.018809 AGATATGCAGGTTTCAATGGTGTT 58.981 37.500 0.00 0.00 0.00 3.32
2553 3166 4.400251 CAGATATGCAGGTTTCAATGGTGT 59.600 41.667 0.00 0.00 0.00 4.16
2554 3167 4.735578 GCAGATATGCAGGTTTCAATGGTG 60.736 45.833 7.61 0.00 34.41 4.17
2555 3168 3.382546 GCAGATATGCAGGTTTCAATGGT 59.617 43.478 7.61 0.00 34.41 3.55
2558 3171 5.664294 TTTGCAGATATGCAGGTTTCAAT 57.336 34.783 15.55 0.00 46.21 2.57
2560 3173 5.465532 TTTTTGCAGATATGCAGGTTTCA 57.534 34.783 15.55 0.00 46.21 2.69
2561 3174 4.866486 CCTTTTTGCAGATATGCAGGTTTC 59.134 41.667 15.55 0.00 46.21 2.78
2562 3175 4.284234 ACCTTTTTGCAGATATGCAGGTTT 59.716 37.500 15.55 0.00 46.21 3.27
2563 3176 3.834231 ACCTTTTTGCAGATATGCAGGTT 59.166 39.130 15.55 2.04 46.21 3.50
2564 3177 3.434309 ACCTTTTTGCAGATATGCAGGT 58.566 40.909 15.55 15.76 46.21 4.00
2565 3178 4.460948 AACCTTTTTGCAGATATGCAGG 57.539 40.909 15.55 15.10 46.21 4.85
2566 3179 7.037438 ACATAAACCTTTTTGCAGATATGCAG 58.963 34.615 15.55 6.05 46.21 4.41
2567 3180 6.934056 ACATAAACCTTTTTGCAGATATGCA 58.066 32.000 11.76 11.76 43.81 3.96
2568 3181 6.476706 GGACATAAACCTTTTTGCAGATATGC 59.523 38.462 5.09 5.09 0.00 3.14
2569 3182 6.980397 GGGACATAAACCTTTTTGCAGATATG 59.020 38.462 0.00 0.00 0.00 1.78
2570 3183 6.098266 GGGGACATAAACCTTTTTGCAGATAT 59.902 38.462 0.00 0.00 0.00 1.63
2571 3184 5.420739 GGGGACATAAACCTTTTTGCAGATA 59.579 40.000 0.00 0.00 0.00 1.98
2572 3185 4.222810 GGGGACATAAACCTTTTTGCAGAT 59.777 41.667 0.00 0.00 0.00 2.90
2573 3186 3.576550 GGGGACATAAACCTTTTTGCAGA 59.423 43.478 0.00 0.00 0.00 4.26
2574 3187 3.323403 TGGGGACATAAACCTTTTTGCAG 59.677 43.478 0.00 0.00 33.40 4.41
2575 3188 3.309296 TGGGGACATAAACCTTTTTGCA 58.691 40.909 0.00 0.00 33.40 4.08
2576 3189 3.576550 TCTGGGGACATAAACCTTTTTGC 59.423 43.478 0.00 0.00 41.51 3.68
2577 3190 5.799827 TTCTGGGGACATAAACCTTTTTG 57.200 39.130 0.00 0.00 41.51 2.44
2578 3191 5.221641 GCTTTCTGGGGACATAAACCTTTTT 60.222 40.000 0.00 0.00 41.51 1.94
2579 3192 4.283467 GCTTTCTGGGGACATAAACCTTTT 59.717 41.667 0.00 0.00 41.51 2.27
2597 3210 1.683943 TGCAGATATGCAGGGCTTTC 58.316 50.000 11.76 0.00 40.23 2.62
2862 3730 9.716531 CTGTGAGAATGATAAATATCTGGCTAA 57.283 33.333 2.40 0.00 33.88 3.09
2881 3749 1.621992 AGGCTCGACTTTCTGTGAGA 58.378 50.000 0.00 0.00 0.00 3.27
2917 3785 3.324846 CAGCCCACAAGACCAGCTATATA 59.675 47.826 0.00 0.00 31.23 0.86
2919 3787 1.486310 CAGCCCACAAGACCAGCTATA 59.514 52.381 0.00 0.00 31.23 1.31
2931 3801 3.730215 ACCATTACAATACAGCCCACA 57.270 42.857 0.00 0.00 0.00 4.17
3066 4069 6.267496 AGCGCTGATTTGTTACCTAAAAAT 57.733 33.333 10.39 0.00 0.00 1.82
3103 4107 1.882167 GCGCACATCTCTCTCAGGC 60.882 63.158 0.30 0.00 0.00 4.85
3189 4196 4.685169 AAGCGTCACCAACTTGATAATG 57.315 40.909 0.00 0.00 0.00 1.90
3190 4197 4.082787 CCAAAGCGTCACCAACTTGATAAT 60.083 41.667 0.00 0.00 0.00 1.28
3191 4198 3.252215 CCAAAGCGTCACCAACTTGATAA 59.748 43.478 0.00 0.00 0.00 1.75
3193 4200 1.608590 CCAAAGCGTCACCAACTTGAT 59.391 47.619 0.00 0.00 0.00 2.57
3194 4201 1.021202 CCAAAGCGTCACCAACTTGA 58.979 50.000 0.00 0.00 0.00 3.02
3195 4202 1.021202 TCCAAAGCGTCACCAACTTG 58.979 50.000 0.00 0.00 0.00 3.16
3198 4205 2.793278 ATTTCCAAAGCGTCACCAAC 57.207 45.000 0.00 0.00 0.00 3.77
3199 4206 3.745799 TCTATTTCCAAAGCGTCACCAA 58.254 40.909 0.00 0.00 0.00 3.67
3200 4207 3.410631 TCTATTTCCAAAGCGTCACCA 57.589 42.857 0.00 0.00 0.00 4.17
3201 4208 4.394920 TCAATCTATTTCCAAAGCGTCACC 59.605 41.667 0.00 0.00 0.00 4.02
3202 4209 5.545658 TCAATCTATTTCCAAAGCGTCAC 57.454 39.130 0.00 0.00 0.00 3.67
3203 4210 6.429692 TCTTTCAATCTATTTCCAAAGCGTCA 59.570 34.615 0.00 0.00 0.00 4.35
3204 4211 6.842163 TCTTTCAATCTATTTCCAAAGCGTC 58.158 36.000 0.00 0.00 0.00 5.19
3205 4212 6.817765 TCTTTCAATCTATTTCCAAAGCGT 57.182 33.333 0.00 0.00 0.00 5.07
3206 4213 8.186821 AGAATCTTTCAATCTATTTCCAAAGCG 58.813 33.333 0.00 0.00 0.00 4.68
3279 4293 6.180472 TGGATTCTGACTTGGTAGAATTTCC 58.820 40.000 0.00 0.00 42.13 3.13
3315 4329 2.873170 TACAGCGTTTGATGAAAGCG 57.127 45.000 0.00 0.00 45.73 4.68
3372 4386 4.213482 AGCCACATACTGTTTTCTTCGAAC 59.787 41.667 0.00 0.00 0.00 3.95
3373 4387 4.385825 AGCCACATACTGTTTTCTTCGAA 58.614 39.130 0.00 0.00 0.00 3.71
3375 4389 4.666655 CGAAGCCACATACTGTTTTCTTCG 60.667 45.833 14.83 14.83 40.65 3.79
3376 4390 4.213482 ACGAAGCCACATACTGTTTTCTTC 59.787 41.667 0.00 0.00 30.63 2.87
3377 4391 4.134563 ACGAAGCCACATACTGTTTTCTT 58.865 39.130 0.00 0.00 0.00 2.52
3378 4392 3.740115 ACGAAGCCACATACTGTTTTCT 58.260 40.909 0.00 0.00 0.00 2.52
3379 4393 4.483476 AACGAAGCCACATACTGTTTTC 57.517 40.909 0.00 0.00 0.00 2.29
3380 4394 4.578928 AGAAACGAAGCCACATACTGTTTT 59.421 37.500 0.00 0.00 0.00 2.43
3381 4395 4.134563 AGAAACGAAGCCACATACTGTTT 58.865 39.130 0.00 0.00 0.00 2.83
3382 4396 3.740115 AGAAACGAAGCCACATACTGTT 58.260 40.909 0.00 0.00 0.00 3.16
3383 4397 3.402628 AGAAACGAAGCCACATACTGT 57.597 42.857 0.00 0.00 0.00 3.55
3384 4398 7.653713 AGATATAAGAAACGAAGCCACATACTG 59.346 37.037 0.00 0.00 0.00 2.74
3385 4399 7.727181 AGATATAAGAAACGAAGCCACATACT 58.273 34.615 0.00 0.00 0.00 2.12
3386 4400 7.148950 CGAGATATAAGAAACGAAGCCACATAC 60.149 40.741 0.00 0.00 0.00 2.39
3387 4401 6.861572 CGAGATATAAGAAACGAAGCCACATA 59.138 38.462 0.00 0.00 0.00 2.29
3388 4402 5.692204 CGAGATATAAGAAACGAAGCCACAT 59.308 40.000 0.00 0.00 0.00 3.21
3389 4403 5.041287 CGAGATATAAGAAACGAAGCCACA 58.959 41.667 0.00 0.00 0.00 4.17
3390 4404 5.041940 ACGAGATATAAGAAACGAAGCCAC 58.958 41.667 0.00 0.00 0.00 5.01
3391 4405 5.258456 ACGAGATATAAGAAACGAAGCCA 57.742 39.130 0.00 0.00 0.00 4.75
3392 4406 5.747197 TCAACGAGATATAAGAAACGAAGCC 59.253 40.000 0.00 0.00 0.00 4.35
3393 4407 6.807708 TCAACGAGATATAAGAAACGAAGC 57.192 37.500 0.00 0.00 0.00 3.86
3394 4408 8.561932 TCATCAACGAGATATAAGAAACGAAG 57.438 34.615 0.00 0.00 34.43 3.79
3395 4409 8.188799 ACTCATCAACGAGATATAAGAAACGAA 58.811 33.333 0.00 0.00 36.47 3.85
3396 4410 7.704271 ACTCATCAACGAGATATAAGAAACGA 58.296 34.615 0.00 0.00 36.47 3.85
3397 4411 7.916128 ACTCATCAACGAGATATAAGAAACG 57.084 36.000 0.00 0.00 36.47 3.60
3402 4416 9.307121 ACAAGAAACTCATCAACGAGATATAAG 57.693 33.333 0.00 0.00 36.47 1.73
3442 4461 1.962306 GTTACCTCGGTGGCGCAAA 60.962 57.895 10.83 0.00 40.22 3.68
3445 4464 2.047560 AAGTTACCTCGGTGGCGC 60.048 61.111 0.00 0.00 40.22 6.53
3452 4471 3.705072 AGATACCAAGGGAAGTTACCTCG 59.295 47.826 7.24 3.23 37.35 4.63
3489 4508 1.879380 TGTGCAGACAACCAATGTAGC 59.121 47.619 0.00 0.00 44.12 3.58
3491 4510 3.888323 ACAATGTGCAGACAACCAATGTA 59.112 39.130 0.00 0.00 44.12 2.29
3543 4572 1.405661 GCTCACTACTAAAGCGGCCTT 60.406 52.381 0.00 0.00 0.00 4.35
3610 4644 5.362430 ACAACAACAACAATGAACCATAGGT 59.638 36.000 0.00 0.00 37.65 3.08
3611 4645 5.841810 ACAACAACAACAATGAACCATAGG 58.158 37.500 0.00 0.00 0.00 2.57
3612 4646 6.756074 ACAACAACAACAACAATGAACCATAG 59.244 34.615 0.00 0.00 0.00 2.23
3613 4647 6.634805 ACAACAACAACAACAATGAACCATA 58.365 32.000 0.00 0.00 0.00 2.74
3614 4648 5.486526 ACAACAACAACAACAATGAACCAT 58.513 33.333 0.00 0.00 0.00 3.55
3615 4649 4.887748 ACAACAACAACAACAATGAACCA 58.112 34.783 0.00 0.00 0.00 3.67
3616 4650 5.854431 AACAACAACAACAACAATGAACC 57.146 34.783 0.00 0.00 0.00 3.62
3617 4651 8.651588 TCAATAACAACAACAACAACAATGAAC 58.348 29.630 0.00 0.00 0.00 3.18
3618 4652 8.763049 TCAATAACAACAACAACAACAATGAA 57.237 26.923 0.00 0.00 0.00 2.57
3619 4653 8.651588 GTTCAATAACAACAACAACAACAATGA 58.348 29.630 0.00 0.00 35.56 2.57
3620 4654 7.902403 GGTTCAATAACAACAACAACAACAATG 59.098 33.333 0.00 0.00 37.34 2.82
3621 4655 7.821846 AGGTTCAATAACAACAACAACAACAAT 59.178 29.630 0.00 0.00 37.34 2.71
3622 4656 7.155328 AGGTTCAATAACAACAACAACAACAA 58.845 30.769 0.00 0.00 37.34 2.83
3623 4657 6.692486 AGGTTCAATAACAACAACAACAACA 58.308 32.000 0.00 0.00 37.34 3.33
3624 4658 8.751335 CATAGGTTCAATAACAACAACAACAAC 58.249 33.333 0.00 0.00 37.34 3.32
3625 4659 7.923344 CCATAGGTTCAATAACAACAACAACAA 59.077 33.333 0.00 0.00 37.34 2.83
3626 4660 7.068839 ACCATAGGTTCAATAACAACAACAACA 59.931 33.333 0.00 0.00 37.34 3.33
3627 4661 7.430441 ACCATAGGTTCAATAACAACAACAAC 58.570 34.615 0.00 0.00 37.34 3.32
3628 4662 7.589958 ACCATAGGTTCAATAACAACAACAA 57.410 32.000 0.00 0.00 37.34 2.83
3629 4663 7.589958 AACCATAGGTTCAATAACAACAACA 57.410 32.000 0.00 0.00 43.05 3.33
3674 4713 3.870633 AGCTAACTCTAGTTTCCCACG 57.129 47.619 0.00 0.00 39.31 4.94
3676 4715 4.101119 GGCATAGCTAACTCTAGTTTCCCA 59.899 45.833 0.00 0.00 39.31 4.37
3689 4729 9.314133 TGAGAAGATATAAGAAGGCATAGCTAA 57.686 33.333 0.00 0.00 0.00 3.09
3739 4781 8.919777 AAACAGTTTCTGCTTTAGTTAGGTAT 57.080 30.769 0.00 0.00 34.37 2.73
3766 4810 0.809241 GCTCGAATCTGGGCAGACAG 60.809 60.000 0.00 0.00 40.75 3.51
3946 4996 7.040686 GGCATCAAACAACTAGAAAAGAGGTAA 60.041 37.037 0.00 0.00 0.00 2.85
3947 4997 6.430000 GGCATCAAACAACTAGAAAAGAGGTA 59.570 38.462 0.00 0.00 0.00 3.08
3976 5027 9.249053 ACATATACATCAGGATATCGGGATATC 57.751 37.037 16.76 16.76 45.53 1.63
3977 5028 9.249053 GACATATACATCAGGATATCGGGATAT 57.751 37.037 7.25 0.90 36.75 1.63
3978 5029 8.448816 AGACATATACATCAGGATATCGGGATA 58.551 37.037 7.25 0.00 0.00 2.59
3979 5030 7.301420 AGACATATACATCAGGATATCGGGAT 58.699 38.462 0.00 0.00 0.00 3.85
4199 5255 4.504858 CCTCCTTGTGATTGTACTGGTAC 58.495 47.826 4.15 4.15 36.63 3.34
4246 5302 7.550551 TGCAAAGGAGATCTTCAGTAAATACAG 59.449 37.037 3.21 0.00 33.94 2.74
4250 5306 7.395489 ACATTGCAAAGGAGATCTTCAGTAAAT 59.605 33.333 1.71 0.00 33.94 1.40
4329 5403 7.951530 CTGTTCAGCCATGAAAAGTAAATTT 57.048 32.000 0.00 0.00 46.75 1.82
4388 5474 0.106335 CAAAAGGCATGTGCACCCAA 59.894 50.000 15.69 0.00 44.36 4.12
4454 5540 3.679980 GTGCTAATGGCGATGACGATATT 59.320 43.478 0.00 0.00 45.43 1.28
4707 5882 8.747677 GGTGTATCCAACATGGTACAAGAGTTC 61.748 44.444 0.00 2.53 41.10 3.01
4757 5935 3.109619 CAATAAGAACGAGAGGAGTCGC 58.890 50.000 0.00 0.00 44.06 5.19
4780 5958 2.401766 CGCACATCCTGTTCCTGGC 61.402 63.158 0.00 0.00 0.00 4.85
4830 6008 3.725754 GGTTCTTTCACCCTCTGCA 57.274 52.632 0.00 0.00 0.00 4.41
4842 6020 0.250513 GATCGGAGCTGTGGGTTCTT 59.749 55.000 0.00 0.00 0.00 2.52
4919 6097 2.292267 GTTGTCCTGGGCATGATGTAG 58.708 52.381 0.00 0.00 0.00 2.74
5017 6195 0.251354 TCTGCTCCCTGATCTTGTGC 59.749 55.000 0.00 0.00 0.00 4.57
5219 6406 1.447489 CTCTCTCTGGCAACCGCAG 60.447 63.158 0.00 0.00 41.24 5.18
5224 6411 0.322975 TCCTTGCTCTCTCTGGCAAC 59.677 55.000 0.00 0.00 42.45 4.17
5228 6415 7.716799 ATATATACTTCCTTGCTCTCTCTGG 57.283 40.000 0.00 0.00 0.00 3.86
5332 6519 1.832883 ACTGAAGGCACACAACACAA 58.167 45.000 0.00 0.00 0.00 3.33
5333 6520 1.832883 AACTGAAGGCACACAACACA 58.167 45.000 0.00 0.00 0.00 3.72
5334 6521 2.923020 CAAAACTGAAGGCACACAACAC 59.077 45.455 0.00 0.00 0.00 3.32
5335 6522 2.822561 TCAAAACTGAAGGCACACAACA 59.177 40.909 0.00 0.00 0.00 3.33
5336 6523 3.438360 CTCAAAACTGAAGGCACACAAC 58.562 45.455 0.00 0.00 0.00 3.32
5406 6594 6.042437 TGGTCATCTCTCTGTAACATGCATAT 59.958 38.462 0.00 0.00 0.00 1.78
5410 6598 4.128925 TGGTCATCTCTCTGTAACATGC 57.871 45.455 0.00 0.00 0.00 4.06
5529 6717 1.545706 GGGGGATGGCTCCGATCTAC 61.546 65.000 0.00 0.00 43.11 2.59
5550 6738 0.321122 CGAATCCAGGGCCTATCAGC 60.321 60.000 5.28 0.00 0.00 4.26
5620 6808 6.889177 TGATCAATATGACCTTTTGCTGGTTA 59.111 34.615 0.00 0.00 38.03 2.85
5660 6848 2.383855 CTCAAGGACCTCGAGGATTCT 58.616 52.381 37.69 25.18 38.94 2.40
5733 6921 2.673368 CTGACCGTGCTATTTGGTTCTC 59.327 50.000 0.00 0.00 35.75 2.87
5749 6937 0.618458 TACCAGTGCCAATCCTGACC 59.382 55.000 0.00 0.00 0.00 4.02
5798 6986 7.147966 ACAGGTAAATCCAAATTAACCCGATTC 60.148 37.037 0.00 0.00 39.02 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.