Multiple sequence alignment - TraesCS3B01G100300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G100300 chr3B 100.000 5928 0 0 1 5928 66815983 66821910 0.000000e+00 10948
1 TraesCS3B01G100300 chr3B 96.317 1276 45 2 1533 2807 41934040 41935314 0.000000e+00 2095
2 TraesCS3B01G100300 chr1B 96.479 1278 40 5 1532 2807 225728797 225730071 0.000000e+00 2106
3 TraesCS3B01G100300 chr1B 96.085 1277 45 4 1533 2807 289321220 289319947 0.000000e+00 2076
4 TraesCS3B01G100300 chr1B 96.296 162 6 0 4043 4204 149248968 149249129 3.520000e-67 267
5 TraesCS3B01G100300 chr1B 95.238 168 7 1 4040 4206 24349048 24349215 1.270000e-66 265
6 TraesCS3B01G100300 chr1B 80.970 268 47 4 4619 4884 111050048 111050313 6.020000e-50 209
7 TraesCS3B01G100300 chr5B 96.241 1277 44 4 1533 2807 224765420 224764146 0.000000e+00 2089
8 TraesCS3B01G100300 chr5B 96.688 785 22 4 2805 3587 138045734 138044952 0.000000e+00 1303
9 TraesCS3B01G100300 chr7B 96.175 1281 42 2 1533 2807 203230885 203229606 0.000000e+00 2087
10 TraesCS3B01G100300 chr7B 96.091 1279 46 4 1529 2806 516686353 516685078 0.000000e+00 2082
11 TraesCS3B01G100300 chr7B 96.746 799 24 1 1 799 588388619 588387823 0.000000e+00 1330
12 TraesCS3B01G100300 chr7B 96.742 798 24 1 1 798 464290596 464289801 0.000000e+00 1328
13 TraesCS3B01G100300 chr7B 96.815 785 21 4 2805 3587 205734850 205735632 0.000000e+00 1308
14 TraesCS3B01G100300 chr7B 96.803 782 21 4 2805 3584 411725798 411726577 0.000000e+00 1303
15 TraesCS3B01G100300 chr7B 96.951 164 5 0 4043 4206 489874322 489874485 5.850000e-70 276
16 TraesCS3B01G100300 chr7B 82.445 319 51 2 4556 4874 640513574 640513887 2.100000e-69 274
17 TraesCS3B01G100300 chr7B 94.220 173 10 0 4032 4204 11441315 11441143 1.270000e-66 265
18 TraesCS3B01G100300 chr5A 96.166 1278 43 6 1533 2807 482707098 482708372 0.000000e+00 2084
19 TraesCS3B01G100300 chr2B 96.022 1282 48 3 1527 2807 162590554 162591833 0.000000e+00 2082
20 TraesCS3B01G100300 chr2B 95.941 1281 51 1 1527 2807 374132814 374134093 0.000000e+00 2076
21 TraesCS3B01G100300 chr2B 96.746 799 24 1 1 799 167575304 167576100 0.000000e+00 1330
22 TraesCS3B01G100300 chr2B 96.621 799 25 1 1 799 513308563 513309359 0.000000e+00 1325
23 TraesCS3B01G100300 chr2B 96.366 798 27 1 1 798 20223685 20224480 0.000000e+00 1312
24 TraesCS3B01G100300 chr2B 96.671 781 24 2 2805 3583 400169763 400170543 0.000000e+00 1297
25 TraesCS3B01G100300 chr3D 93.111 1292 48 17 4226 5493 42896634 42897908 0.000000e+00 1855
26 TraesCS3B01G100300 chr3D 94.414 734 37 1 799 1532 42895458 42896187 0.000000e+00 1125
27 TraesCS3B01G100300 chr3D 98.052 462 9 0 3583 4044 42896182 42896643 0.000000e+00 804
28 TraesCS3B01G100300 chr3D 90.955 199 12 5 4043 4236 537154863 537154666 4.560000e-66 263
29 TraesCS3B01G100300 chr3D 93.678 174 10 1 4033 4206 6667446 6667274 5.890000e-65 259
30 TraesCS3B01G100300 chr3A 90.385 1456 77 19 4202 5641 54932673 54934081 0.000000e+00 1855
31 TraesCS3B01G100300 chr3A 92.120 736 51 4 799 1532 54931490 54932220 0.000000e+00 1031
32 TraesCS3B01G100300 chr3A 94.481 453 22 1 3583 4032 54932215 54932667 0.000000e+00 695
33 TraesCS3B01G100300 chr3A 92.337 261 13 2 5642 5901 54934112 54934366 1.210000e-96 364
34 TraesCS3B01G100300 chr3A 94.675 169 9 0 4036 4204 13540973 13541141 4.560000e-66 263
35 TraesCS3B01G100300 chr3A 96.341 82 3 0 803 884 54937266 54937347 1.040000e-27 135
36 TraesCS3B01G100300 chr4A 96.742 798 24 1 1 798 729332608 729331813 0.000000e+00 1328
37 TraesCS3B01G100300 chr4A 95.931 811 29 4 1 810 729174662 729173855 0.000000e+00 1312
38 TraesCS3B01G100300 chr4A 96.556 784 25 2 2805 3587 123416623 123417405 0.000000e+00 1297
39 TraesCS3B01G100300 chr4A 96.319 163 4 2 4043 4204 733789526 733789687 3.520000e-67 267
40 TraesCS3B01G100300 chr4A 94.675 169 9 0 4036 4204 517406464 517406632 4.560000e-66 263
41 TraesCS3B01G100300 chr6B 96.617 798 25 1 1 798 213114036 213113241 0.000000e+00 1323
42 TraesCS3B01G100300 chr6B 96.384 802 24 4 2 803 281473103 281472307 0.000000e+00 1315
43 TraesCS3B01G100300 chr6B 97.531 162 4 0 4043 4204 672492767 672492606 1.630000e-70 278
44 TraesCS3B01G100300 chr6A 96.692 786 22 4 2805 3587 535910584 535911368 0.000000e+00 1304
45 TraesCS3B01G100300 chr6A 96.803 782 21 4 2805 3583 511605427 511606207 0.000000e+00 1303
46 TraesCS3B01G100300 chr2A 96.556 784 25 2 2805 3587 67113649 67112867 0.000000e+00 1297
47 TraesCS3B01G100300 chr1A 96.556 784 23 4 2805 3587 449535621 449536401 0.000000e+00 1295
48 TraesCS3B01G100300 chr1A 95.706 163 7 0 4042 4204 496854480 496854318 4.560000e-66 263
49 TraesCS3B01G100300 chr1D 94.318 176 9 1 4031 4206 463381894 463382068 9.790000e-68 268
50 TraesCS3B01G100300 chr1D 96.296 162 6 0 4043 4204 338937373 338937212 3.520000e-67 267
51 TraesCS3B01G100300 chr1D 80.586 273 47 6 4615 4884 69195671 69195940 7.790000e-49 206
52 TraesCS3B01G100300 chrUn 95.783 166 6 1 4039 4204 141680910 141680746 3.520000e-67 267
53 TraesCS3B01G100300 chrUn 93.865 163 10 0 4042 4204 41734214 41734376 4.590000e-61 246
54 TraesCS3B01G100300 chrUn 93.373 166 11 0 4039 4204 88350303 88350138 4.590000e-61 246
55 TraesCS3B01G100300 chrUn 93.373 166 10 1 4043 4208 34210914 34210750 1.650000e-60 244
56 TraesCS3B01G100300 chrUn 92.814 167 11 1 4039 4204 237024429 237024263 2.130000e-59 241
57 TraesCS3B01G100300 chrUn 92.814 167 11 1 4039 4204 347778163 347778329 2.130000e-59 241
58 TraesCS3B01G100300 chrUn 92.814 167 11 1 4039 4204 419948619 419948785 2.130000e-59 241
59 TraesCS3B01G100300 chrUn 91.566 166 14 0 4042 4207 51488975 51489140 4.620000e-56 230
60 TraesCS3B01G100300 chrUn 91.566 166 14 0 4039 4204 257463988 257463823 4.620000e-56 230
61 TraesCS3B01G100300 chr2D 95.732 164 7 0 4041 4204 87407362 87407525 1.270000e-66 265
62 TraesCS3B01G100300 chr2D 94.118 170 9 1 4038 4207 624881951 624881783 2.120000e-64 257
63 TraesCS3B01G100300 chr2D 94.578 166 8 1 4041 4205 539170149 539169984 7.620000e-64 255
64 TraesCS3B01G100300 chr4B 95.706 163 7 0 4042 4204 135218048 135218210 4.560000e-66 263
65 TraesCS3B01G100300 chr7D 94.643 168 9 0 4039 4206 296507679 296507846 1.640000e-65 261
66 TraesCS3B01G100300 chr7D 81.548 168 19 6 5140 5306 530943299 530943455 1.730000e-25 128
67 TraesCS3B01G100300 chr6D 95.152 165 8 0 4043 4207 96521508 96521344 1.640000e-65 261
68 TraesCS3B01G100300 chr6D 94.118 170 9 1 4043 4212 21051971 21052139 2.120000e-64 257
69 TraesCS3B01G100300 chr6D 94.545 165 9 0 4040 4204 93213737 93213901 7.620000e-64 255
70 TraesCS3B01G100300 chr6D 93.976 166 9 1 4040 4204 423084157 423084322 3.550000e-62 250
71 TraesCS3B01G100300 chr6D 92.982 171 11 1 4043 4212 426106891 426106721 1.280000e-61 248
72 TraesCS3B01G100300 chr5D 95.679 162 7 0 4043 4204 53583238 53583077 1.640000e-65 261
73 TraesCS3B01G100300 chr4D 94.611 167 9 0 4042 4208 12520139 12520305 5.890000e-65 259
74 TraesCS3B01G100300 chr4D 94.048 168 10 0 4039 4206 136489524 136489691 7.620000e-64 255
75 TraesCS3B01G100300 chr4D 95.062 162 8 0 4043 4204 437295765 437295926 7.620000e-64 255
76 TraesCS3B01G100300 chr4D 93.976 166 10 0 4040 4205 23312221 23312056 9.860000e-63 252
77 TraesCS3B01G100300 chr4D 93.023 172 10 2 4034 4204 3590465 3590635 3.550000e-62 250
78 TraesCS3B01G100300 chr7A 79.412 238 34 9 5071 5306 611471256 611471480 2.860000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G100300 chr3B 66815983 66821910 5927 False 10948.000000 10948 100.000000 1 5928 1 chr3B.!!$F2 5927
1 TraesCS3B01G100300 chr3B 41934040 41935314 1274 False 2095.000000 2095 96.317000 1533 2807 1 chr3B.!!$F1 1274
2 TraesCS3B01G100300 chr1B 225728797 225730071 1274 False 2106.000000 2106 96.479000 1532 2807 1 chr1B.!!$F4 1275
3 TraesCS3B01G100300 chr1B 289319947 289321220 1273 True 2076.000000 2076 96.085000 1533 2807 1 chr1B.!!$R1 1274
4 TraesCS3B01G100300 chr5B 224764146 224765420 1274 True 2089.000000 2089 96.241000 1533 2807 1 chr5B.!!$R2 1274
5 TraesCS3B01G100300 chr5B 138044952 138045734 782 True 1303.000000 1303 96.688000 2805 3587 1 chr5B.!!$R1 782
6 TraesCS3B01G100300 chr7B 203229606 203230885 1279 True 2087.000000 2087 96.175000 1533 2807 1 chr7B.!!$R2 1274
7 TraesCS3B01G100300 chr7B 516685078 516686353 1275 True 2082.000000 2082 96.091000 1529 2806 1 chr7B.!!$R4 1277
8 TraesCS3B01G100300 chr7B 588387823 588388619 796 True 1330.000000 1330 96.746000 1 799 1 chr7B.!!$R5 798
9 TraesCS3B01G100300 chr7B 464289801 464290596 795 True 1328.000000 1328 96.742000 1 798 1 chr7B.!!$R3 797
10 TraesCS3B01G100300 chr7B 205734850 205735632 782 False 1308.000000 1308 96.815000 2805 3587 1 chr7B.!!$F1 782
11 TraesCS3B01G100300 chr7B 411725798 411726577 779 False 1303.000000 1303 96.803000 2805 3584 1 chr7B.!!$F2 779
12 TraesCS3B01G100300 chr5A 482707098 482708372 1274 False 2084.000000 2084 96.166000 1533 2807 1 chr5A.!!$F1 1274
13 TraesCS3B01G100300 chr2B 162590554 162591833 1279 False 2082.000000 2082 96.022000 1527 2807 1 chr2B.!!$F2 1280
14 TraesCS3B01G100300 chr2B 374132814 374134093 1279 False 2076.000000 2076 95.941000 1527 2807 1 chr2B.!!$F4 1280
15 TraesCS3B01G100300 chr2B 167575304 167576100 796 False 1330.000000 1330 96.746000 1 799 1 chr2B.!!$F3 798
16 TraesCS3B01G100300 chr2B 513308563 513309359 796 False 1325.000000 1325 96.621000 1 799 1 chr2B.!!$F6 798
17 TraesCS3B01G100300 chr2B 20223685 20224480 795 False 1312.000000 1312 96.366000 1 798 1 chr2B.!!$F1 797
18 TraesCS3B01G100300 chr2B 400169763 400170543 780 False 1297.000000 1297 96.671000 2805 3583 1 chr2B.!!$F5 778
19 TraesCS3B01G100300 chr3D 42895458 42897908 2450 False 1261.333333 1855 95.192333 799 5493 3 chr3D.!!$F1 4694
20 TraesCS3B01G100300 chr3A 54931490 54937347 5857 False 816.000000 1855 93.132800 799 5901 5 chr3A.!!$F2 5102
21 TraesCS3B01G100300 chr4A 729331813 729332608 795 True 1328.000000 1328 96.742000 1 798 1 chr4A.!!$R2 797
22 TraesCS3B01G100300 chr4A 729173855 729174662 807 True 1312.000000 1312 95.931000 1 810 1 chr4A.!!$R1 809
23 TraesCS3B01G100300 chr4A 123416623 123417405 782 False 1297.000000 1297 96.556000 2805 3587 1 chr4A.!!$F1 782
24 TraesCS3B01G100300 chr6B 213113241 213114036 795 True 1323.000000 1323 96.617000 1 798 1 chr6B.!!$R1 797
25 TraesCS3B01G100300 chr6B 281472307 281473103 796 True 1315.000000 1315 96.384000 2 803 1 chr6B.!!$R2 801
26 TraesCS3B01G100300 chr6A 535910584 535911368 784 False 1304.000000 1304 96.692000 2805 3587 1 chr6A.!!$F2 782
27 TraesCS3B01G100300 chr6A 511605427 511606207 780 False 1303.000000 1303 96.803000 2805 3583 1 chr6A.!!$F1 778
28 TraesCS3B01G100300 chr2A 67112867 67113649 782 True 1297.000000 1297 96.556000 2805 3587 1 chr2A.!!$R1 782
29 TraesCS3B01G100300 chr1A 449535621 449536401 780 False 1295.000000 1295 96.556000 2805 3587 1 chr1A.!!$F1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 762 0.387929 TCCGGCGGACATTGATAGTC 59.612 55.000 27.46 0.0 35.29 2.59 F
784 786 0.901580 TGTCCGAACACCCCCTAGTC 60.902 60.000 0.00 0.0 0.00 2.59 F
1093 1095 1.117749 CGCCCTCATCCAGATCCTCA 61.118 60.000 0.00 0.0 0.00 3.86 F
2728 2735 0.332972 GCCCCCTGGTCTTCATCTTT 59.667 55.000 0.00 0.0 0.00 2.52 F
3499 4201 0.599204 GAAAACAGCGTCAGTCCGGA 60.599 55.000 0.00 0.0 0.00 5.14 F
3820 4522 1.226542 CAGCATCTCAGCCCCACAT 59.773 57.895 0.00 0.0 34.23 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2709 2716 0.332972 AAAGATGAAGACCAGGGGGC 59.667 55.000 0.00 0.00 37.90 5.80 R
2716 2723 1.066143 TCCTCGCCAAAGATGAAGACC 60.066 52.381 0.00 0.00 0.00 3.85 R
2761 2768 1.124780 TGACCTGAAACTCCACGGAA 58.875 50.000 0.00 0.00 0.00 4.30 R
3588 4290 0.179100 CGGCGAGGAGACAATGACAT 60.179 55.000 0.00 0.00 0.00 3.06 R
4831 5541 0.320247 ACACTTGGCAGAGCTCTTCG 60.320 55.000 15.27 4.92 0.00 3.79 R
5295 6021 1.093159 GCTGAGGATGGAAAGCACAG 58.907 55.000 0.00 0.00 35.69 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.850098 CTTGGCTGTGGCTCGGGTT 62.850 63.158 0.00 0.00 38.73 4.11
218 219 2.287069 CGCCGAATACGAAGATCTGTCT 60.287 50.000 0.00 0.00 42.66 3.41
541 542 5.359576 CCTAGAAGCTAGCCTATGGTATGAG 59.640 48.000 12.13 0.00 0.00 2.90
582 584 2.091499 TCCTATCGACTAAAGCCCTCCA 60.091 50.000 0.00 0.00 0.00 3.86
596 598 7.394144 AAAGCCCTCCAGTTTATATAGACAT 57.606 36.000 6.22 0.00 0.00 3.06
601 603 6.350277 CCCTCCAGTTTATATAGACATCGGAC 60.350 46.154 6.22 0.00 0.00 4.79
626 628 1.749634 CTAGGGTTACACAGAGTCGGG 59.250 57.143 0.00 0.00 0.00 5.14
759 761 2.511818 TCCGGCGGACATTGATAGT 58.488 52.632 27.46 0.00 0.00 2.12
760 762 0.387929 TCCGGCGGACATTGATAGTC 59.612 55.000 27.46 0.00 35.29 2.59
766 768 1.871080 GGACATTGATAGTCCGGCTG 58.129 55.000 0.00 0.00 45.35 4.85
767 769 1.139058 GGACATTGATAGTCCGGCTGT 59.861 52.381 0.00 0.00 45.35 4.40
768 770 2.474816 GACATTGATAGTCCGGCTGTC 58.525 52.381 13.21 13.21 36.09 3.51
769 771 1.139058 ACATTGATAGTCCGGCTGTCC 59.861 52.381 16.04 4.52 34.84 4.02
779 781 4.717313 GGCTGTCCGAACACCCCC 62.717 72.222 0.00 0.00 0.00 5.40
780 782 3.637273 GCTGTCCGAACACCCCCT 61.637 66.667 0.00 0.00 0.00 4.79
781 783 2.288025 GCTGTCCGAACACCCCCTA 61.288 63.158 0.00 0.00 0.00 3.53
782 784 1.898154 CTGTCCGAACACCCCCTAG 59.102 63.158 0.00 0.00 0.00 3.02
783 785 0.903454 CTGTCCGAACACCCCCTAGT 60.903 60.000 0.00 0.00 0.00 2.57
784 786 0.901580 TGTCCGAACACCCCCTAGTC 60.902 60.000 0.00 0.00 0.00 2.59
785 787 1.305549 TCCGAACACCCCCTAGTCC 60.306 63.158 0.00 0.00 0.00 3.85
786 788 1.611261 CCGAACACCCCCTAGTCCA 60.611 63.158 0.00 0.00 0.00 4.02
787 789 1.614241 CCGAACACCCCCTAGTCCAG 61.614 65.000 0.00 0.00 0.00 3.86
788 790 1.614241 CGAACACCCCCTAGTCCAGG 61.614 65.000 0.00 0.00 45.07 4.45
827 829 2.615747 GCTCTAAGCTCGGAAAACCCTT 60.616 50.000 0.00 0.00 38.45 3.95
934 936 2.910479 TCCGCGCATCCCTATCGT 60.910 61.111 8.75 0.00 0.00 3.73
971 973 6.100279 ACCTGCCATATTTGATCTGAACTCTA 59.900 38.462 0.00 0.00 0.00 2.43
1033 1035 1.230635 GCGGCTGAAGCTTTCTGACA 61.231 55.000 0.00 0.00 41.70 3.58
1035 1037 1.875576 CGGCTGAAGCTTTCTGACACT 60.876 52.381 0.00 0.00 41.70 3.55
1093 1095 1.117749 CGCCCTCATCCAGATCCTCA 61.118 60.000 0.00 0.00 0.00 3.86
1284 1286 1.830477 GTCAGACAGGATGCCTCTTCT 59.170 52.381 0.00 0.00 42.53 2.85
1353 1355 5.183228 GGCTTACTGTTTTGCCACTATCTA 58.817 41.667 11.63 0.00 44.34 1.98
1382 1385 2.393646 GGTCATGGCTAGGAGAAGAGT 58.606 52.381 0.00 0.00 0.00 3.24
1396 1399 2.158696 AGAAGAGTTGCCTTGAAGCTGT 60.159 45.455 0.00 0.00 0.00 4.40
1463 1466 2.746277 CCTTACGCTGCCGCCTTT 60.746 61.111 0.00 0.00 38.22 3.11
1551 1554 5.221185 GCTCGTGATAACCCACAAGTATAGA 60.221 44.000 0.00 0.00 36.89 1.98
1569 1572 2.427506 AGAGGATCGCAACAGTTTTCC 58.572 47.619 0.00 0.00 42.67 3.13
1661 1664 3.243168 GCAGCTGAGTTGTCAATTCAACA 60.243 43.478 20.43 0.28 46.78 3.33
1869 1876 2.027192 AGCGATGGATAATTATGCCGGT 60.027 45.455 13.70 12.85 0.00 5.28
1890 1897 2.358957 TGTGGTTCATCATGTAGCAGC 58.641 47.619 0.00 0.00 0.00 5.25
1895 1902 3.750130 GGTTCATCATGTAGCAGCCATAG 59.250 47.826 0.00 0.00 0.00 2.23
1974 1981 8.496707 TCCGAATATAGTCATACGTGCTTATA 57.503 34.615 0.00 0.00 0.00 0.98
2020 2027 2.683933 CTACCCTCCCGTGGCAGT 60.684 66.667 0.00 0.00 0.00 4.40
2081 2088 7.886446 TCCTTTTAATAGAGAACCGGAACAAAT 59.114 33.333 9.46 0.00 0.00 2.32
2157 2164 3.262151 TGGTCCCGATTATTGTCACTTCA 59.738 43.478 0.00 0.00 0.00 3.02
2164 2171 4.935205 CGATTATTGTCACTTCAGGGTTGA 59.065 41.667 0.00 0.00 0.00 3.18
2308 2315 5.401550 GCATTAAGCATAGCAAAGTCACAA 58.598 37.500 0.00 0.00 44.79 3.33
2647 2654 2.029964 GTTGGAGTTGGCGTCGGA 59.970 61.111 0.00 0.00 0.00 4.55
2648 2655 2.027625 GTTGGAGTTGGCGTCGGAG 61.028 63.158 0.00 0.00 0.00 4.63
2649 2656 3.234630 TTGGAGTTGGCGTCGGAGG 62.235 63.158 0.00 0.00 0.00 4.30
2650 2657 4.452733 GGAGTTGGCGTCGGAGGG 62.453 72.222 0.00 0.00 0.00 4.30
2673 2680 4.798682 AGGGGGCCCACGAGGTAG 62.799 72.222 26.86 0.00 38.92 3.18
2706 2713 4.136978 CCCTAGTGAGCAGGGTGT 57.863 61.111 0.00 0.00 46.77 4.16
2707 2714 1.599047 CCCTAGTGAGCAGGGTGTG 59.401 63.158 0.00 0.00 46.77 3.82
2708 2715 1.599047 CCTAGTGAGCAGGGTGTGG 59.401 63.158 0.00 0.00 0.00 4.17
2709 2716 1.599047 CTAGTGAGCAGGGTGTGGG 59.401 63.158 0.00 0.00 0.00 4.61
2710 2717 2.527951 CTAGTGAGCAGGGTGTGGGC 62.528 65.000 0.00 0.00 0.00 5.36
2721 2728 4.938756 TGTGGGCCCCCTGGTCTT 62.939 66.667 22.27 0.00 36.12 3.01
2722 2729 4.048470 GTGGGCCCCCTGGTCTTC 62.048 72.222 22.27 0.00 36.12 2.87
2723 2730 4.608514 TGGGCCCCCTGGTCTTCA 62.609 66.667 22.27 0.00 36.12 3.02
2724 2731 3.023735 GGGCCCCCTGGTCTTCAT 61.024 66.667 12.23 0.00 36.12 2.57
2725 2732 2.597903 GGCCCCCTGGTCTTCATC 59.402 66.667 0.00 0.00 31.67 2.92
2726 2733 2.003548 GGCCCCCTGGTCTTCATCT 61.004 63.158 0.00 0.00 31.67 2.90
2727 2734 1.575447 GGCCCCCTGGTCTTCATCTT 61.575 60.000 0.00 0.00 31.67 2.40
2728 2735 0.332972 GCCCCCTGGTCTTCATCTTT 59.667 55.000 0.00 0.00 0.00 2.52
2729 2736 1.957113 GCCCCCTGGTCTTCATCTTTG 60.957 57.143 0.00 0.00 0.00 2.77
2730 2737 1.341383 CCCCCTGGTCTTCATCTTTGG 60.341 57.143 0.00 0.00 0.00 3.28
2731 2738 1.467920 CCCTGGTCTTCATCTTTGGC 58.532 55.000 0.00 0.00 0.00 4.52
2732 2739 1.089920 CCTGGTCTTCATCTTTGGCG 58.910 55.000 0.00 0.00 0.00 5.69
2733 2740 1.339055 CCTGGTCTTCATCTTTGGCGA 60.339 52.381 0.00 0.00 0.00 5.54
2734 2741 2.005451 CTGGTCTTCATCTTTGGCGAG 58.995 52.381 0.00 0.00 0.00 5.03
2735 2742 1.339055 TGGTCTTCATCTTTGGCGAGG 60.339 52.381 0.00 0.00 0.00 4.63
2736 2743 1.066143 GGTCTTCATCTTTGGCGAGGA 60.066 52.381 0.00 0.00 0.00 3.71
2737 2744 2.420687 GGTCTTCATCTTTGGCGAGGAT 60.421 50.000 0.00 0.00 0.00 3.24
2738 2745 3.274288 GTCTTCATCTTTGGCGAGGATT 58.726 45.455 0.00 0.00 0.00 3.01
2739 2746 3.691609 GTCTTCATCTTTGGCGAGGATTT 59.308 43.478 0.00 0.00 0.00 2.17
2740 2747 4.156739 GTCTTCATCTTTGGCGAGGATTTT 59.843 41.667 0.00 0.00 0.00 1.82
2741 2748 4.766891 TCTTCATCTTTGGCGAGGATTTTT 59.233 37.500 0.00 0.00 0.00 1.94
2772 2779 9.847224 ATTTATTGTAAGATATTCCGTGGAGTT 57.153 29.630 0.00 0.00 0.00 3.01
2773 2780 9.675464 TTTATTGTAAGATATTCCGTGGAGTTT 57.325 29.630 0.00 0.00 0.00 2.66
2774 2781 7.787725 ATTGTAAGATATTCCGTGGAGTTTC 57.212 36.000 0.00 0.00 0.00 2.78
2775 2782 6.288941 TGTAAGATATTCCGTGGAGTTTCA 57.711 37.500 5.05 0.00 0.00 2.69
2776 2783 6.338146 TGTAAGATATTCCGTGGAGTTTCAG 58.662 40.000 5.05 0.00 0.00 3.02
2777 2784 4.408182 AGATATTCCGTGGAGTTTCAGG 57.592 45.455 5.05 0.00 0.00 3.86
2778 2785 3.775316 AGATATTCCGTGGAGTTTCAGGT 59.225 43.478 5.05 0.00 0.00 4.00
2779 2786 2.474410 ATTCCGTGGAGTTTCAGGTC 57.526 50.000 0.00 0.00 0.00 3.85
2780 2787 1.124780 TTCCGTGGAGTTTCAGGTCA 58.875 50.000 0.00 0.00 0.00 4.02
2781 2788 1.348064 TCCGTGGAGTTTCAGGTCAT 58.652 50.000 0.00 0.00 0.00 3.06
2782 2789 1.697432 TCCGTGGAGTTTCAGGTCATT 59.303 47.619 0.00 0.00 0.00 2.57
2783 2790 2.076863 CCGTGGAGTTTCAGGTCATTC 58.923 52.381 0.00 0.00 0.00 2.67
2784 2791 2.076863 CGTGGAGTTTCAGGTCATTCC 58.923 52.381 0.00 0.00 0.00 3.01
2785 2792 2.076863 GTGGAGTTTCAGGTCATTCCG 58.923 52.381 0.00 0.00 41.99 4.30
2786 2793 1.974957 TGGAGTTTCAGGTCATTCCGA 59.025 47.619 0.00 0.00 41.99 4.55
2787 2794 2.028112 TGGAGTTTCAGGTCATTCCGAG 60.028 50.000 0.00 0.00 41.99 4.63
2788 2795 2.233922 GGAGTTTCAGGTCATTCCGAGA 59.766 50.000 0.00 0.00 41.99 4.04
2789 2796 3.306780 GGAGTTTCAGGTCATTCCGAGAA 60.307 47.826 0.00 0.00 41.99 2.87
2790 2797 3.665190 AGTTTCAGGTCATTCCGAGAAC 58.335 45.455 0.00 0.00 41.99 3.01
2791 2798 3.325135 AGTTTCAGGTCATTCCGAGAACT 59.675 43.478 0.00 0.00 41.99 3.01
2792 2799 4.065789 GTTTCAGGTCATTCCGAGAACTT 58.934 43.478 0.00 0.00 41.99 2.66
2793 2800 4.351874 TTCAGGTCATTCCGAGAACTTT 57.648 40.909 0.00 0.00 41.99 2.66
2794 2801 4.351874 TCAGGTCATTCCGAGAACTTTT 57.648 40.909 0.00 0.00 41.99 2.27
2795 2802 4.065088 TCAGGTCATTCCGAGAACTTTTG 58.935 43.478 0.00 0.00 41.99 2.44
2796 2803 3.815401 CAGGTCATTCCGAGAACTTTTGT 59.185 43.478 0.00 0.00 41.99 2.83
2797 2804 4.275936 CAGGTCATTCCGAGAACTTTTGTT 59.724 41.667 0.00 0.00 42.83 2.83
2798 2805 4.887655 AGGTCATTCCGAGAACTTTTGTTT 59.112 37.500 0.00 0.00 41.30 2.83
2799 2806 5.359860 AGGTCATTCCGAGAACTTTTGTTTT 59.640 36.000 0.00 0.00 41.30 2.43
2800 2807 5.685954 GGTCATTCCGAGAACTTTTGTTTTC 59.314 40.000 0.00 0.00 43.66 2.29
2801 2808 6.459710 GGTCATTCCGAGAACTTTTGTTTTCT 60.460 38.462 0.00 0.00 43.66 2.52
2802 2809 6.414987 GTCATTCCGAGAACTTTTGTTTTCTG 59.585 38.462 0.00 0.00 43.66 3.02
2803 2810 4.287238 TCCGAGAACTTTTGTTTTCTGC 57.713 40.909 0.00 0.00 43.66 4.26
2951 2958 5.742453 GCAAAGTCATAGCAACATCAATCTG 59.258 40.000 0.00 0.00 0.00 2.90
2994 3001 7.476540 GGGATCAAACCCTAACAAAACTAAT 57.523 36.000 0.00 0.00 45.90 1.73
3022 3029 8.992073 CGATTACATGATAAATCTCATCCAACA 58.008 33.333 0.00 0.00 33.59 3.33
3499 4201 0.599204 GAAAACAGCGTCAGTCCGGA 60.599 55.000 0.00 0.00 0.00 5.14
3548 4250 3.517500 AGAGTCCAAAACAAGGGCAAAAA 59.482 39.130 0.00 0.00 31.65 1.94
3555 4257 5.105997 CCAAAACAAGGGCAAAAATGTTTGA 60.106 36.000 12.75 0.00 45.99 2.69
3590 4292 2.323939 GGAGACGTATCAGCTCGATG 57.676 55.000 12.92 0.00 35.39 3.84
3591 4293 1.604755 GGAGACGTATCAGCTCGATGT 59.395 52.381 12.92 0.00 35.39 3.06
3770 4472 3.314635 CCATCAGCTAAAAGTGCAGGATC 59.685 47.826 0.00 0.00 0.00 3.36
3820 4522 1.226542 CAGCATCTCAGCCCCACAT 59.773 57.895 0.00 0.00 34.23 3.21
3919 4621 5.335661 GCTTGTCCTCCAACAATTTATCGTT 60.336 40.000 0.00 0.00 38.41 3.85
3951 4656 1.535028 CTACATTGCTTCGCACAACCA 59.465 47.619 0.00 0.00 38.71 3.67
3971 4676 4.236935 CCATAATTGTGCGCTTCTTTTGT 58.763 39.130 9.73 0.00 0.00 2.83
4044 4749 7.082602 CCGGTGAGTTCATGTATACTATGTAC 58.917 42.308 4.17 9.76 0.00 2.90
4045 4750 7.040617 CCGGTGAGTTCATGTATACTATGTACT 60.041 40.741 18.39 18.39 38.39 2.73
4046 4751 8.016229 CGGTGAGTTCATGTATACTATGTACTC 58.984 40.741 26.27 26.27 45.44 2.59
4047 4752 8.298140 GGTGAGTTCATGTATACTATGTACTCC 58.702 40.741 27.77 22.98 45.02 3.85
4048 4753 8.298140 GTGAGTTCATGTATACTATGTACTCCC 58.702 40.741 27.77 21.54 45.02 4.30
4049 4754 8.225416 TGAGTTCATGTATACTATGTACTCCCT 58.775 37.037 27.77 12.86 45.02 4.20
4050 4755 8.638629 AGTTCATGTATACTATGTACTCCCTC 57.361 38.462 15.30 0.04 32.83 4.30
4051 4756 7.670559 AGTTCATGTATACTATGTACTCCCTCC 59.329 40.741 15.30 0.00 32.83 4.30
4052 4757 6.178324 TCATGTATACTATGTACTCCCTCCG 58.822 44.000 4.17 0.00 0.00 4.63
4053 4758 5.573380 TGTATACTATGTACTCCCTCCGT 57.427 43.478 4.17 0.00 0.00 4.69
4054 4759 5.945310 TGTATACTATGTACTCCCTCCGTT 58.055 41.667 4.17 0.00 0.00 4.44
4055 4760 6.000219 TGTATACTATGTACTCCCTCCGTTC 59.000 44.000 4.17 0.00 0.00 3.95
4056 4761 2.664015 ACTATGTACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
4057 4762 2.244252 ACTATGTACTCCCTCCGTTCCT 59.756 50.000 0.00 0.00 0.00 3.36
4058 4763 3.461085 ACTATGTACTCCCTCCGTTCCTA 59.539 47.826 0.00 0.00 0.00 2.94
4059 4764 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
4060 4765 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
4061 4766 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
4062 4767 3.449737 TGTACTCCCTCCGTTCCTAAATG 59.550 47.826 0.00 0.00 0.00 2.32
4063 4768 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
4064 4769 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
4065 4770 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
4066 4771 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
4067 4772 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
4068 4773 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
4069 4774 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
4070 4775 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4071 4776 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
4072 4777 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
4073 4778 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
4074 4779 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
4075 4780 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
4076 4781 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
4091 4796 9.660180 AGTCTTTTTAGAGATTTCACTATGGAC 57.340 33.333 0.00 0.00 0.00 4.02
4092 4797 9.660180 GTCTTTTTAGAGATTTCACTATGGACT 57.340 33.333 0.00 0.00 0.00 3.85
4099 4804 7.877003 AGAGATTTCACTATGGACTACATACG 58.123 38.462 0.00 0.00 41.03 3.06
4100 4805 6.982852 AGATTTCACTATGGACTACATACGG 58.017 40.000 0.00 0.00 41.03 4.02
4101 4806 6.776116 AGATTTCACTATGGACTACATACGGA 59.224 38.462 0.00 0.00 41.03 4.69
4102 4807 6.387041 TTTCACTATGGACTACATACGGAG 57.613 41.667 0.00 0.00 41.03 4.63
4103 4808 3.819337 TCACTATGGACTACATACGGAGC 59.181 47.826 0.00 0.00 41.03 4.70
4104 4809 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
4105 4810 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
4106 4811 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
4107 4812 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
4108 4813 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
4109 4814 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
4110 4815 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
4111 4816 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
4112 4817 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4113 4818 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4114 4819 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4115 4820 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4116 4821 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4117 4822 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4118 4823 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4119 4824 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4120 4825 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4121 4826 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4122 4827 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
4123 4828 6.183360 CGGAGCAAAATGAGTGAATCTACATT 60.183 38.462 0.00 0.00 34.99 2.71
4124 4829 7.192232 GGAGCAAAATGAGTGAATCTACATTC 58.808 38.462 0.00 0.00 39.24 2.67
4125 4830 7.066766 GGAGCAAAATGAGTGAATCTACATTCT 59.933 37.037 0.00 0.00 39.49 2.40
4126 4831 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
4127 4832 9.624373 AGCAAAATGAGTGAATCTACATTCTAT 57.376 29.630 0.00 0.00 39.49 1.98
4164 4869 6.519679 ACATCCGTATGTAGTTTGTAGTGA 57.480 37.500 0.00 0.00 44.66 3.41
4165 4870 6.927416 ACATCCGTATGTAGTTTGTAGTGAA 58.073 36.000 0.00 0.00 44.66 3.18
4166 4871 7.380536 ACATCCGTATGTAGTTTGTAGTGAAA 58.619 34.615 0.00 0.00 44.66 2.69
4167 4872 8.038944 ACATCCGTATGTAGTTTGTAGTGAAAT 58.961 33.333 0.00 0.00 44.66 2.17
4168 4873 8.540492 CATCCGTATGTAGTTTGTAGTGAAATC 58.460 37.037 0.00 0.00 0.00 2.17
4169 4874 7.833786 TCCGTATGTAGTTTGTAGTGAAATCT 58.166 34.615 0.00 0.00 0.00 2.40
4170 4875 7.972277 TCCGTATGTAGTTTGTAGTGAAATCTC 59.028 37.037 0.00 0.00 0.00 2.75
4171 4876 7.974501 CCGTATGTAGTTTGTAGTGAAATCTCT 59.025 37.037 0.00 0.00 0.00 3.10
4172 4877 9.999009 CGTATGTAGTTTGTAGTGAAATCTCTA 57.001 33.333 0.00 0.00 0.00 2.43
4198 4903 8.581253 AAAAGACTTACATTTAGGAATGGAGG 57.419 34.615 4.39 0.00 45.56 4.30
4199 4904 6.253946 AGACTTACATTTAGGAATGGAGGG 57.746 41.667 4.39 0.00 45.56 4.30
4200 4905 5.970640 AGACTTACATTTAGGAATGGAGGGA 59.029 40.000 4.39 0.00 45.56 4.20
4210 4915 7.798710 TTAGGAATGGAGGGAGTATAATCTG 57.201 40.000 0.00 0.00 0.00 2.90
4296 5006 5.013079 TCCTTTTGTGTGTGACCTCTCATAT 59.987 40.000 0.00 0.00 0.00 1.78
4364 5074 3.421844 ACAAGGGTTCCTGATGTTAAGC 58.578 45.455 0.00 0.00 32.13 3.09
4600 5310 4.682787 GGTTGGTCTTATTAAGCCAATGC 58.317 43.478 23.23 16.11 42.42 3.56
4609 5319 2.779742 TAAGCCAATGCGCCCCTTGT 62.780 55.000 4.18 0.00 44.33 3.16
4610 5320 3.694538 GCCAATGCGCCCCTTGTT 61.695 61.111 4.18 0.00 0.00 2.83
4611 5321 2.347322 GCCAATGCGCCCCTTGTTA 61.347 57.895 4.18 0.00 0.00 2.41
4612 5322 1.882989 GCCAATGCGCCCCTTGTTAA 61.883 55.000 4.18 0.00 0.00 2.01
4749 5459 4.217118 AGGAAGTGAACATGAAATCAGTGC 59.783 41.667 0.00 2.62 29.89 4.40
4813 5523 8.328758 AGGATGACAGTAAATTTCCATTACTCA 58.671 33.333 0.00 0.00 40.65 3.41
4831 5541 3.378427 ACTCAGTCACTGAAAACAAAGCC 59.622 43.478 9.30 0.00 40.18 4.35
4898 5608 3.738982 TGTATGATTTGTAGGATGCCCG 58.261 45.455 0.00 0.00 37.58 6.13
4920 5630 4.527564 GACATGTCGGAGAAAGTTTTGTG 58.472 43.478 10.69 0.00 39.69 3.33
4928 5638 4.970003 CGGAGAAAGTTTTGTGTGCTTAAG 59.030 41.667 0.00 0.00 0.00 1.85
4945 5655 6.978080 GTGCTTAAGAAGACACCAATTTTTGA 59.022 34.615 6.67 0.00 32.83 2.69
4993 5705 2.168106 AGCAGCTTATGTGAGACTGGAG 59.832 50.000 0.00 0.00 0.00 3.86
4994 5706 2.548875 CAGCTTATGTGAGACTGGAGC 58.451 52.381 0.00 0.00 0.00 4.70
5014 5726 8.911918 TGGAGCAAACTAGTTTAAATTGTAGA 57.088 30.769 20.15 0.00 0.00 2.59
5157 5874 3.206150 CGGTAACTTTATGCCTCATGCT 58.794 45.455 0.00 0.00 42.00 3.79
5258 5982 7.875971 AGGATTTCAGTTTACAAGATTGTCAC 58.124 34.615 0.59 1.11 42.35 3.67
5270 5994 6.877236 ACAAGATTGTCACTTTGTTGGAAAT 58.123 32.000 0.00 0.00 36.50 2.17
5271 5995 6.757947 ACAAGATTGTCACTTTGTTGGAAATG 59.242 34.615 0.00 0.00 36.50 2.32
5276 6002 7.969536 TTGTCACTTTGTTGGAAATGAAAAA 57.030 28.000 0.00 0.00 0.00 1.94
5312 6038 2.639347 TCTTCTGTGCTTTCCATCCTCA 59.361 45.455 0.00 0.00 0.00 3.86
5332 6058 3.253188 TCAGCAAAAGTTTTGATCTCCGG 59.747 43.478 28.36 12.39 0.00 5.14
5482 6219 6.238953 GCAATTCATACAAAGCCTCTGATGAT 60.239 38.462 0.00 0.00 0.00 2.45
5488 6225 3.755378 ACAAAGCCTCTGATGATGAACAC 59.245 43.478 0.00 0.00 0.00 3.32
5494 6236 3.387374 CCTCTGATGATGAACACTAGGCT 59.613 47.826 0.00 0.00 0.00 4.58
5519 6261 9.319143 CTTTACCAGTTATCTGTTTCTAGGATG 57.681 37.037 0.30 0.00 39.82 3.51
5521 6263 6.879400 ACCAGTTATCTGTTTCTAGGATGAC 58.121 40.000 0.30 0.00 39.82 3.06
5527 6269 9.308318 GTTATCTGTTTCTAGGATGACTTCTTC 57.692 37.037 0.00 0.00 0.00 2.87
5551 6293 4.695455 TCGAAATCTCAAAGCTAAAGGTGG 59.305 41.667 0.00 0.00 0.00 4.61
5552 6294 4.455877 CGAAATCTCAAAGCTAAAGGTGGT 59.544 41.667 0.00 0.00 0.00 4.16
5553 6295 5.617751 CGAAATCTCAAAGCTAAAGGTGGTG 60.618 44.000 0.00 0.00 0.00 4.17
5572 6314 2.355132 GTGCTGAGCTGGAATCTCATTG 59.645 50.000 5.83 0.00 39.56 2.82
5583 6325 6.204495 GCTGGAATCTCATTGTAAGGATTCTC 59.796 42.308 12.24 5.71 41.88 2.87
5585 6327 6.098266 TGGAATCTCATTGTAAGGATTCTCGA 59.902 38.462 12.24 0.00 41.88 4.04
5595 6337 6.570692 TGTAAGGATTCTCGAGTAATGAACC 58.429 40.000 13.13 8.52 0.00 3.62
5597 6339 5.878406 AGGATTCTCGAGTAATGAACCAT 57.122 39.130 13.13 0.00 0.00 3.55
5600 6342 3.819564 TCTCGAGTAATGAACCATGGG 57.180 47.619 18.09 0.00 0.00 4.00
5664 6436 2.113860 AGTAAGCCATCACGCATTGT 57.886 45.000 0.00 0.00 0.00 2.71
5673 6445 1.868997 CACGCATTGTGTGGACCTC 59.131 57.895 20.18 0.00 43.88 3.85
5746 6519 2.795297 CGAGAGGAGCACGGAGAC 59.205 66.667 0.00 0.00 0.00 3.36
5800 6573 2.167398 CTCCGTGGAACCATGACCGT 62.167 60.000 13.85 0.00 35.09 4.83
5822 6595 8.915036 ACCGTGAAGATGAAGACTATAAATAGT 58.085 33.333 2.26 2.26 45.73 2.12
5862 6635 1.068816 ACGCCCGCACAAGATTAAAAC 60.069 47.619 0.00 0.00 0.00 2.43
5863 6636 1.068885 CGCCCGCACAAGATTAAAACA 60.069 47.619 0.00 0.00 0.00 2.83
5864 6637 2.605823 CGCCCGCACAAGATTAAAACAA 60.606 45.455 0.00 0.00 0.00 2.83
5865 6638 3.385577 GCCCGCACAAGATTAAAACAAA 58.614 40.909 0.00 0.00 0.00 2.83
5866 6639 3.804873 GCCCGCACAAGATTAAAACAAAA 59.195 39.130 0.00 0.00 0.00 2.44
5867 6640 4.084589 GCCCGCACAAGATTAAAACAAAAG 60.085 41.667 0.00 0.00 0.00 2.27
5901 6674 3.731652 TGTGAGGCAAAACAAAGGATG 57.268 42.857 0.00 0.00 0.00 3.51
5903 6676 3.450457 TGTGAGGCAAAACAAAGGATGTT 59.550 39.130 0.00 0.00 45.86 2.71
5904 6677 4.051237 GTGAGGCAAAACAAAGGATGTTC 58.949 43.478 0.00 0.00 45.86 3.18
5905 6678 3.960102 TGAGGCAAAACAAAGGATGTTCT 59.040 39.130 0.00 0.00 45.86 3.01
5906 6679 4.037923 TGAGGCAAAACAAAGGATGTTCTC 59.962 41.667 0.00 0.00 45.86 2.87
5909 6682 5.774690 AGGCAAAACAAAGGATGTTCTCATA 59.225 36.000 0.00 0.00 45.86 2.15
5910 6683 6.438425 AGGCAAAACAAAGGATGTTCTCATAT 59.562 34.615 0.00 0.00 45.86 1.78
5911 6684 7.615365 AGGCAAAACAAAGGATGTTCTCATATA 59.385 33.333 0.00 0.00 45.86 0.86
5912 6685 8.416329 GGCAAAACAAAGGATGTTCTCATATAT 58.584 33.333 0.00 0.00 45.86 0.86
5917 6690 9.784531 AACAAAGGATGTTCTCATATATACTGG 57.215 33.333 0.00 0.00 45.86 4.00
5918 6691 9.159254 ACAAAGGATGTTCTCATATATACTGGA 57.841 33.333 0.00 0.00 40.06 3.86
5919 6692 9.429359 CAAAGGATGTTCTCATATATACTGGAC 57.571 37.037 0.00 0.00 34.06 4.02
5921 6694 8.727100 AGGATGTTCTCATATATACTGGACAA 57.273 34.615 0.00 0.00 34.06 3.18
5923 6696 9.429359 GGATGTTCTCATATATACTGGACAAAG 57.571 37.037 0.00 0.00 34.06 2.77
5924 6697 9.429359 GATGTTCTCATATATACTGGACAAAGG 57.571 37.037 0.00 0.00 34.06 3.11
5925 6698 8.547481 TGTTCTCATATATACTGGACAAAGGA 57.453 34.615 0.00 0.00 0.00 3.36
5926 6699 9.159254 TGTTCTCATATATACTGGACAAAGGAT 57.841 33.333 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 0.388263 GACTTGACCCTCGACGAACC 60.388 60.000 0.00 0.00 0.00 3.62
70 71 0.959372 GGAGACTTGACCCTCGACGA 60.959 60.000 0.00 0.00 0.00 4.20
79 80 0.802607 GATGTCCGCGGAGACTTGAC 60.803 60.000 31.97 16.50 37.66 3.18
218 219 2.899303 GGGTGAGATTTTTCTCCCCA 57.101 50.000 17.60 0.00 42.50 4.96
354 355 1.374252 CCGCCTAGACGCACAGTTT 60.374 57.895 0.00 0.00 0.00 2.66
567 569 2.474410 AAACTGGAGGGCTTTAGTCG 57.526 50.000 0.00 0.00 0.00 4.18
582 584 5.047235 GCCCTGTCCGATGTCTATATAAACT 60.047 44.000 0.00 0.00 0.00 2.66
596 598 0.685458 GTAACCCTAGCCCTGTCCGA 60.685 60.000 0.00 0.00 0.00 4.55
601 603 1.482593 CTCTGTGTAACCCTAGCCCTG 59.517 57.143 0.00 0.00 34.36 4.45
626 628 8.688151 GGATATGTAGATCTCCTACCATTGTAC 58.312 40.741 0.00 0.00 45.60 2.90
764 766 0.903454 ACTAGGGGGTGTTCGGACAG 60.903 60.000 0.00 0.00 36.20 3.51
765 767 0.901580 GACTAGGGGGTGTTCGGACA 60.902 60.000 0.00 0.00 0.00 4.02
766 768 1.611474 GGACTAGGGGGTGTTCGGAC 61.611 65.000 0.00 0.00 0.00 4.79
767 769 1.305549 GGACTAGGGGGTGTTCGGA 60.306 63.158 0.00 0.00 0.00 4.55
768 770 1.611261 TGGACTAGGGGGTGTTCGG 60.611 63.158 0.00 0.00 0.00 4.30
769 771 1.614241 CCTGGACTAGGGGGTGTTCG 61.614 65.000 0.00 0.00 43.33 3.95
770 772 2.297937 CCTGGACTAGGGGGTGTTC 58.702 63.158 0.00 0.00 43.33 3.18
771 773 4.581391 CCTGGACTAGGGGGTGTT 57.419 61.111 0.00 0.00 43.33 3.32
778 780 0.631753 TGAGGGAGTCCTGGACTAGG 59.368 60.000 28.41 0.00 43.53 3.02
779 781 2.026905 GCTGAGGGAGTCCTGGACTAG 61.027 61.905 28.41 21.42 43.53 2.57
780 782 0.033011 GCTGAGGGAGTCCTGGACTA 60.033 60.000 28.41 12.33 43.53 2.59
781 783 1.305718 GCTGAGGGAGTCCTGGACT 60.306 63.158 28.70 28.70 46.42 3.85
782 784 2.716017 CGCTGAGGGAGTCCTGGAC 61.716 68.421 19.20 19.20 45.05 4.02
783 785 2.363018 CGCTGAGGGAGTCCTGGA 60.363 66.667 9.58 0.00 45.05 3.86
784 786 3.465403 CCGCTGAGGGAGTCCTGG 61.465 72.222 9.58 0.00 45.05 4.45
785 787 0.468214 TATCCGCTGAGGGAGTCCTG 60.468 60.000 9.58 0.00 45.05 3.86
787 789 0.605589 CATATCCGCTGAGGGAGTCC 59.394 60.000 0.00 0.00 40.02 3.85
788 790 0.037790 GCATATCCGCTGAGGGAGTC 60.038 60.000 0.00 0.00 40.02 3.36
789 791 0.470833 AGCATATCCGCTGAGGGAGT 60.471 55.000 0.00 0.00 41.85 3.85
790 792 0.246086 GAGCATATCCGCTGAGGGAG 59.754 60.000 0.00 0.00 44.01 4.30
791 793 0.178950 AGAGCATATCCGCTGAGGGA 60.179 55.000 0.00 0.00 44.01 4.20
792 794 1.550327 TAGAGCATATCCGCTGAGGG 58.450 55.000 0.00 0.00 44.01 4.30
793 795 2.673610 GCTTAGAGCATATCCGCTGAGG 60.674 54.545 0.00 0.00 44.01 3.86
794 796 2.230992 AGCTTAGAGCATATCCGCTGAG 59.769 50.000 2.47 0.00 45.56 3.35
795 797 2.230025 GAGCTTAGAGCATATCCGCTGA 59.770 50.000 2.47 0.00 45.56 4.26
796 798 2.605030 GAGCTTAGAGCATATCCGCTG 58.395 52.381 2.47 0.00 45.56 5.18
797 799 1.201181 CGAGCTTAGAGCATATCCGCT 59.799 52.381 2.47 0.00 45.56 5.52
827 829 6.095300 CCATGGTTATGTAGATGCAAGAAACA 59.905 38.462 2.57 0.00 32.21 2.83
950 952 7.521261 GCCTTTAGAGTTCAGATCAAATATGGC 60.521 40.741 0.00 0.00 0.00 4.40
971 973 2.043652 ATGGATGCAGCCGCCTTT 60.044 55.556 17.68 0.00 37.32 3.11
992 994 3.267860 CCTTCGGCATGCTCGCTC 61.268 66.667 18.92 0.00 0.00 5.03
993 995 4.087892 ACCTTCGGCATGCTCGCT 62.088 61.111 18.92 0.72 0.00 4.93
994 996 3.869272 CACCTTCGGCATGCTCGC 61.869 66.667 18.92 0.00 0.00 5.03
995 997 3.869272 GCACCTTCGGCATGCTCG 61.869 66.667 18.92 18.81 36.40 5.03
1019 1021 2.224378 CCTCCAGTGTCAGAAAGCTTCA 60.224 50.000 0.00 0.00 0.00 3.02
1093 1095 1.448540 CGAGGCAACGGAGCTTGAT 60.449 57.895 0.00 0.00 46.39 2.57
1163 1165 2.042843 GGAGCTTCGGGAGGAGGA 60.043 66.667 0.00 0.00 35.41 3.71
1237 1239 2.765807 CTCCTGGAGCATCGGGGT 60.766 66.667 11.42 0.00 34.37 4.95
1353 1355 0.760567 TAGCCATGACCCTCTGCGAT 60.761 55.000 0.00 0.00 0.00 4.58
1382 1385 1.785041 GCACGACAGCTTCAAGGCAA 61.785 55.000 0.00 0.00 34.17 4.52
1470 1473 0.038526 GAAGACTGAGTCGGGCGAAA 60.039 55.000 6.99 0.00 37.67 3.46
1551 1554 2.154462 CTGGAAAACTGTTGCGATCCT 58.846 47.619 12.90 0.00 0.00 3.24
1661 1664 5.221843 TGCAGATACTAAGTTTCCAGGTGTT 60.222 40.000 0.00 0.00 0.00 3.32
1869 1876 2.749076 GCTGCTACATGATGAACCACAA 59.251 45.455 0.00 0.00 0.00 3.33
1890 1897 2.700371 TCTGTGTCACCCTATGCTATGG 59.300 50.000 0.00 0.00 0.00 2.74
1895 1902 2.770164 AGTTCTGTGTCACCCTATGC 57.230 50.000 0.00 0.00 0.00 3.14
1974 1981 6.645790 AAGATGTCATGCAAGTTCTTTTCT 57.354 33.333 0.00 0.00 0.00 2.52
2020 2027 3.526019 CCTTAGTTTCCAATAGGACCCCA 59.474 47.826 0.00 0.00 45.73 4.96
2081 2088 9.045223 GTTCATGTATTCACTATGTGCTAATGA 57.955 33.333 0.00 0.00 32.98 2.57
2157 2164 2.569853 TGTGTTATGATCCGTCAACCCT 59.430 45.455 0.00 0.00 38.01 4.34
2164 2171 5.831525 TCACCTACTATGTGTTATGATCCGT 59.168 40.000 0.00 0.00 35.25 4.69
2306 2313 9.285770 CATTATGTTCTGAGATTGATGTTGTTG 57.714 33.333 0.00 0.00 0.00 3.33
2308 2315 7.830697 TCCATTATGTTCTGAGATTGATGTTGT 59.169 33.333 0.00 0.00 0.00 3.32
2388 2395 1.855295 TGCTAGACGGTGATGGGTTA 58.145 50.000 0.00 0.00 0.00 2.85
2656 2663 4.798682 CTACCTCGTGGGCCCCCT 62.799 72.222 22.27 0.00 39.10 4.79
2681 2688 3.470888 CTCACTAGGGTGGGGGCG 61.471 72.222 0.00 0.00 43.17 6.13
2682 2689 3.798511 GCTCACTAGGGTGGGGGC 61.799 72.222 0.00 0.00 43.73 5.80
2683 2690 2.285368 TGCTCACTAGGGTGGGGG 60.285 66.667 0.00 0.00 43.73 5.40
2684 2691 2.370445 CCTGCTCACTAGGGTGGGG 61.370 68.421 0.00 0.00 43.73 4.96
2685 2692 3.313874 CCTGCTCACTAGGGTGGG 58.686 66.667 0.00 0.00 46.13 4.61
2690 2697 1.599047 CCACACCCTGCTCACTAGG 59.401 63.158 0.00 0.00 35.01 3.02
2691 2698 1.599047 CCCACACCCTGCTCACTAG 59.401 63.158 0.00 0.00 0.00 2.57
2692 2699 2.592993 GCCCACACCCTGCTCACTA 61.593 63.158 0.00 0.00 0.00 2.74
2693 2700 3.958860 GCCCACACCCTGCTCACT 61.959 66.667 0.00 0.00 0.00 3.41
2704 2711 4.938756 AAGACCAGGGGGCCCACA 62.939 66.667 30.24 0.00 38.92 4.17
2705 2712 4.048470 GAAGACCAGGGGGCCCAC 62.048 72.222 26.86 23.59 38.92 4.61
2706 2713 3.908712 ATGAAGACCAGGGGGCCCA 62.909 63.158 26.86 0.00 38.92 5.36
2707 2714 3.023735 ATGAAGACCAGGGGGCCC 61.024 66.667 15.76 15.76 37.90 5.80
2708 2715 1.575447 AAGATGAAGACCAGGGGGCC 61.575 60.000 0.00 0.00 37.90 5.80
2709 2716 0.332972 AAAGATGAAGACCAGGGGGC 59.667 55.000 0.00 0.00 37.90 5.80
2710 2717 1.341383 CCAAAGATGAAGACCAGGGGG 60.341 57.143 0.00 0.00 41.29 5.40
2711 2718 1.957113 GCCAAAGATGAAGACCAGGGG 60.957 57.143 0.00 0.00 0.00 4.79
2712 2719 1.467920 GCCAAAGATGAAGACCAGGG 58.532 55.000 0.00 0.00 0.00 4.45
2713 2720 1.089920 CGCCAAAGATGAAGACCAGG 58.910 55.000 0.00 0.00 0.00 4.45
2714 2721 2.005451 CTCGCCAAAGATGAAGACCAG 58.995 52.381 0.00 0.00 0.00 4.00
2715 2722 1.339055 CCTCGCCAAAGATGAAGACCA 60.339 52.381 0.00 0.00 0.00 4.02
2716 2723 1.066143 TCCTCGCCAAAGATGAAGACC 60.066 52.381 0.00 0.00 0.00 3.85
2717 2724 2.386661 TCCTCGCCAAAGATGAAGAC 57.613 50.000 0.00 0.00 0.00 3.01
2718 2725 3.634397 AATCCTCGCCAAAGATGAAGA 57.366 42.857 0.00 0.00 0.00 2.87
2719 2726 4.708726 AAAATCCTCGCCAAAGATGAAG 57.291 40.909 0.00 0.00 0.00 3.02
2746 2753 9.847224 AACTCCACGGAATATCTTACAATAAAT 57.153 29.630 0.00 0.00 0.00 1.40
2747 2754 9.675464 AAACTCCACGGAATATCTTACAATAAA 57.325 29.630 0.00 0.00 0.00 1.40
2748 2755 9.321562 GAAACTCCACGGAATATCTTACAATAA 57.678 33.333 0.00 0.00 0.00 1.40
2749 2756 8.479689 TGAAACTCCACGGAATATCTTACAATA 58.520 33.333 0.00 0.00 0.00 1.90
2750 2757 7.335627 TGAAACTCCACGGAATATCTTACAAT 58.664 34.615 0.00 0.00 0.00 2.71
2751 2758 6.703319 TGAAACTCCACGGAATATCTTACAA 58.297 36.000 0.00 0.00 0.00 2.41
2752 2759 6.288941 TGAAACTCCACGGAATATCTTACA 57.711 37.500 0.00 0.00 0.00 2.41
2753 2760 5.753921 CCTGAAACTCCACGGAATATCTTAC 59.246 44.000 0.00 0.00 0.00 2.34
2754 2761 5.424252 ACCTGAAACTCCACGGAATATCTTA 59.576 40.000 0.00 0.00 0.00 2.10
2755 2762 4.225267 ACCTGAAACTCCACGGAATATCTT 59.775 41.667 0.00 0.00 0.00 2.40
2756 2763 3.775316 ACCTGAAACTCCACGGAATATCT 59.225 43.478 0.00 0.00 0.00 1.98
2757 2764 4.120589 GACCTGAAACTCCACGGAATATC 58.879 47.826 0.00 0.00 0.00 1.63
2758 2765 3.517901 TGACCTGAAACTCCACGGAATAT 59.482 43.478 0.00 0.00 0.00 1.28
2759 2766 2.901192 TGACCTGAAACTCCACGGAATA 59.099 45.455 0.00 0.00 0.00 1.75
2760 2767 1.697432 TGACCTGAAACTCCACGGAAT 59.303 47.619 0.00 0.00 0.00 3.01
2761 2768 1.124780 TGACCTGAAACTCCACGGAA 58.875 50.000 0.00 0.00 0.00 4.30
2762 2769 1.348064 ATGACCTGAAACTCCACGGA 58.652 50.000 0.00 0.00 0.00 4.69
2763 2770 2.076863 GAATGACCTGAAACTCCACGG 58.923 52.381 0.00 0.00 0.00 4.94
2764 2771 2.076863 GGAATGACCTGAAACTCCACG 58.923 52.381 0.00 0.00 35.41 4.94
2765 2772 2.076863 CGGAATGACCTGAAACTCCAC 58.923 52.381 0.00 0.00 36.31 4.02
2766 2773 1.974957 TCGGAATGACCTGAAACTCCA 59.025 47.619 0.00 0.00 36.31 3.86
2767 2774 2.233922 TCTCGGAATGACCTGAAACTCC 59.766 50.000 0.00 0.00 36.31 3.85
2768 2775 3.594603 TCTCGGAATGACCTGAAACTC 57.405 47.619 0.00 0.00 36.31 3.01
2769 2776 3.325135 AGTTCTCGGAATGACCTGAAACT 59.675 43.478 0.00 0.00 36.31 2.66
2770 2777 3.665190 AGTTCTCGGAATGACCTGAAAC 58.335 45.455 0.00 0.00 36.31 2.78
2771 2778 4.351874 AAGTTCTCGGAATGACCTGAAA 57.648 40.909 0.00 0.00 36.31 2.69
2772 2779 4.351874 AAAGTTCTCGGAATGACCTGAA 57.648 40.909 0.00 0.00 36.31 3.02
2773 2780 4.065088 CAAAAGTTCTCGGAATGACCTGA 58.935 43.478 0.00 0.00 36.31 3.86
2774 2781 3.815401 ACAAAAGTTCTCGGAATGACCTG 59.185 43.478 0.00 0.00 36.31 4.00
2775 2782 4.086706 ACAAAAGTTCTCGGAATGACCT 57.913 40.909 0.00 0.00 36.31 3.85
2776 2783 4.830826 AACAAAAGTTCTCGGAATGACC 57.169 40.909 0.00 0.00 0.00 4.02
2777 2784 6.414987 CAGAAAACAAAAGTTCTCGGAATGAC 59.585 38.462 0.00 0.00 31.66 3.06
2778 2785 6.494842 CAGAAAACAAAAGTTCTCGGAATGA 58.505 36.000 0.00 0.00 31.66 2.57
2779 2786 5.173854 GCAGAAAACAAAAGTTCTCGGAATG 59.826 40.000 0.00 0.00 31.66 2.67
2780 2787 5.163561 TGCAGAAAACAAAAGTTCTCGGAAT 60.164 36.000 0.00 0.00 31.66 3.01
2781 2788 4.156922 TGCAGAAAACAAAAGTTCTCGGAA 59.843 37.500 0.00 0.00 31.66 4.30
2782 2789 3.692101 TGCAGAAAACAAAAGTTCTCGGA 59.308 39.130 0.00 0.00 31.66 4.55
2783 2790 3.791353 GTGCAGAAAACAAAAGTTCTCGG 59.209 43.478 0.00 0.00 31.66 4.63
2784 2791 4.262976 GTGTGCAGAAAACAAAAGTTCTCG 59.737 41.667 0.00 0.00 31.66 4.04
2785 2792 5.160641 TGTGTGCAGAAAACAAAAGTTCTC 58.839 37.500 0.00 0.00 31.66 2.87
2786 2793 5.132897 TGTGTGCAGAAAACAAAAGTTCT 57.867 34.783 0.00 0.00 34.37 3.01
2787 2794 6.751888 ACTATGTGTGCAGAAAACAAAAGTTC 59.248 34.615 0.00 0.00 0.00 3.01
2788 2795 6.630071 ACTATGTGTGCAGAAAACAAAAGTT 58.370 32.000 0.00 0.00 0.00 2.66
2789 2796 6.207691 ACTATGTGTGCAGAAAACAAAAGT 57.792 33.333 0.00 0.00 0.00 2.66
2790 2797 6.857964 CCTACTATGTGTGCAGAAAACAAAAG 59.142 38.462 0.00 0.00 0.00 2.27
2791 2798 6.320164 ACCTACTATGTGTGCAGAAAACAAAA 59.680 34.615 0.00 0.00 0.00 2.44
2792 2799 5.825679 ACCTACTATGTGTGCAGAAAACAAA 59.174 36.000 0.00 0.00 0.00 2.83
2793 2800 5.238432 CACCTACTATGTGTGCAGAAAACAA 59.762 40.000 0.00 0.00 0.00 2.83
2794 2801 4.754618 CACCTACTATGTGTGCAGAAAACA 59.245 41.667 0.00 0.00 0.00 2.83
2795 2802 4.994852 TCACCTACTATGTGTGCAGAAAAC 59.005 41.667 0.00 0.00 35.25 2.43
2796 2803 4.994852 GTCACCTACTATGTGTGCAGAAAA 59.005 41.667 0.00 0.00 35.25 2.29
2797 2804 4.283467 AGTCACCTACTATGTGTGCAGAAA 59.717 41.667 0.00 0.00 36.36 2.52
2798 2805 3.832490 AGTCACCTACTATGTGTGCAGAA 59.168 43.478 0.00 0.00 36.36 3.02
2799 2806 3.431415 AGTCACCTACTATGTGTGCAGA 58.569 45.455 0.00 0.00 36.36 4.26
2800 2807 3.876274 AGTCACCTACTATGTGTGCAG 57.124 47.619 0.00 0.00 36.36 4.41
2951 2958 8.367660 TGATCCCTAGTATCCATTATGTTCTC 57.632 38.462 0.00 0.00 0.00 2.87
2994 3001 9.777297 TTGGATGAGATTTATCATGTAATCGAA 57.223 29.630 0.00 0.00 40.02 3.71
3022 3029 1.672356 GCTTGCTGGACGGTGATGT 60.672 57.895 0.00 0.00 0.00 3.06
3201 3208 5.869888 AGAGAGAAAGTTTCATCGCGTTTAT 59.130 36.000 17.65 0.00 0.00 1.40
3328 3343 3.391382 CTCACGAGGGTGGGGGAC 61.391 72.222 0.00 0.00 44.50 4.46
3548 4250 6.938030 TCCGTGGTATCTACTTTTTCAAACAT 59.062 34.615 0.00 0.00 0.00 2.71
3555 4257 4.741342 CGTCTCCGTGGTATCTACTTTTT 58.259 43.478 0.00 0.00 0.00 1.94
3587 4289 1.576356 GGCGAGGAGACAATGACATC 58.424 55.000 0.00 0.00 0.00 3.06
3588 4290 0.179100 CGGCGAGGAGACAATGACAT 60.179 55.000 0.00 0.00 0.00 3.06
3589 4291 1.215382 CGGCGAGGAGACAATGACA 59.785 57.895 0.00 0.00 0.00 3.58
3590 4292 2.167861 GCGGCGAGGAGACAATGAC 61.168 63.158 12.98 0.00 0.00 3.06
3591 4293 2.184322 GCGGCGAGGAGACAATGA 59.816 61.111 12.98 0.00 0.00 2.57
3770 4472 2.127118 CGCAACTGGAGCAAAGCG 60.127 61.111 0.00 0.00 39.17 4.68
3919 4621 5.584649 CGAAGCAATGTAGTCCTTTCCATAA 59.415 40.000 0.00 0.00 0.00 1.90
3951 4656 4.236935 CCACAAAAGAAGCGCACAATTAT 58.763 39.130 11.47 0.00 0.00 1.28
4044 4749 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4045 4750 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4046 4751 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4047 4752 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4048 4753 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
4049 4754 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
4050 4755 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
4065 4770 9.660180 GTCCATAGTGAAATCTCTAAAAAGACT 57.340 33.333 0.00 0.00 0.00 3.24
4066 4771 9.660180 AGTCCATAGTGAAATCTCTAAAAAGAC 57.340 33.333 0.00 0.00 0.00 3.01
4073 4778 9.000486 CGTATGTAGTCCATAGTGAAATCTCTA 58.000 37.037 0.00 0.00 36.71 2.43
4074 4779 7.040340 CCGTATGTAGTCCATAGTGAAATCTCT 60.040 40.741 0.00 0.00 36.71 3.10
4075 4780 7.040617 TCCGTATGTAGTCCATAGTGAAATCTC 60.041 40.741 0.00 0.00 36.71 2.75
4076 4781 6.776116 TCCGTATGTAGTCCATAGTGAAATCT 59.224 38.462 0.00 0.00 36.71 2.40
4077 4782 6.978338 TCCGTATGTAGTCCATAGTGAAATC 58.022 40.000 0.00 0.00 36.71 2.17
4078 4783 6.516860 GCTCCGTATGTAGTCCATAGTGAAAT 60.517 42.308 0.00 0.00 36.71 2.17
4079 4784 5.221185 GCTCCGTATGTAGTCCATAGTGAAA 60.221 44.000 0.00 0.00 36.71 2.69
4080 4785 4.277672 GCTCCGTATGTAGTCCATAGTGAA 59.722 45.833 0.00 0.00 36.71 3.18
4081 4786 3.819337 GCTCCGTATGTAGTCCATAGTGA 59.181 47.826 0.00 0.00 36.71 3.41
4082 4787 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
4083 4788 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
4084 4789 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
4085 4790 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
4086 4791 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
4087 4792 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
4088 4793 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
4089 4794 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4090 4795 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4091 4796 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4092 4797 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4093 4798 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4094 4799 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4095 4800 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4096 4801 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4097 4802 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4098 4803 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4099 4804 6.690194 ATGTAGATTCACTCATTTTGCTCC 57.310 37.500 0.00 0.00 0.00 4.70
4100 4805 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
4101 4806 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
4138 4843 9.341078 TCACTACAAACTACATACGGATGTATA 57.659 33.333 20.64 9.08 45.42 1.47
4139 4844 8.229253 TCACTACAAACTACATACGGATGTAT 57.771 34.615 20.64 8.38 45.42 2.29
4140 4845 7.628769 TCACTACAAACTACATACGGATGTA 57.371 36.000 19.32 19.32 44.77 2.29
4142 4847 7.821595 TTTCACTACAAACTACATACGGATG 57.178 36.000 5.94 5.94 39.16 3.51
4143 4848 8.475639 AGATTTCACTACAAACTACATACGGAT 58.524 33.333 0.00 0.00 0.00 4.18
4144 4849 7.833786 AGATTTCACTACAAACTACATACGGA 58.166 34.615 0.00 0.00 0.00 4.69
4145 4850 7.974501 AGAGATTTCACTACAAACTACATACGG 59.025 37.037 0.00 0.00 0.00 4.02
4146 4851 8.912787 AGAGATTTCACTACAAACTACATACG 57.087 34.615 0.00 0.00 0.00 3.06
4172 4877 9.025041 CCTCCATTCCTAAATGTAAGTCTTTTT 57.975 33.333 0.00 0.00 40.63 1.94
4173 4878 7.615757 CCCTCCATTCCTAAATGTAAGTCTTTT 59.384 37.037 0.00 0.00 40.63 2.27
4174 4879 7.036863 TCCCTCCATTCCTAAATGTAAGTCTTT 60.037 37.037 0.00 0.00 40.63 2.52
4175 4880 6.447084 TCCCTCCATTCCTAAATGTAAGTCTT 59.553 38.462 0.00 0.00 40.63 3.01
4176 4881 5.970640 TCCCTCCATTCCTAAATGTAAGTCT 59.029 40.000 0.00 0.00 40.63 3.24
4177 4882 6.126739 ACTCCCTCCATTCCTAAATGTAAGTC 60.127 42.308 0.00 0.00 40.63 3.01
4178 4883 5.731678 ACTCCCTCCATTCCTAAATGTAAGT 59.268 40.000 0.00 0.00 40.63 2.24
4179 4884 6.253946 ACTCCCTCCATTCCTAAATGTAAG 57.746 41.667 0.00 0.00 40.63 2.34
4180 4885 7.947782 ATACTCCCTCCATTCCTAAATGTAA 57.052 36.000 0.00 0.00 40.63 2.41
4181 4886 9.629649 ATTATACTCCCTCCATTCCTAAATGTA 57.370 33.333 0.00 0.00 40.63 2.29
4182 4887 7.947782 TTATACTCCCTCCATTCCTAAATGT 57.052 36.000 0.00 0.00 40.63 2.71
4183 4888 8.830741 AGATTATACTCCCTCCATTCCTAAATG 58.169 37.037 0.00 0.00 41.69 2.32
4184 4889 8.830741 CAGATTATACTCCCTCCATTCCTAAAT 58.169 37.037 0.00 0.00 0.00 1.40
4185 4890 7.794683 ACAGATTATACTCCCTCCATTCCTAAA 59.205 37.037 0.00 0.00 0.00 1.85
4186 4891 7.235606 CACAGATTATACTCCCTCCATTCCTAA 59.764 40.741 0.00 0.00 0.00 2.69
4187 4892 6.726299 CACAGATTATACTCCCTCCATTCCTA 59.274 42.308 0.00 0.00 0.00 2.94
4188 4893 5.545723 CACAGATTATACTCCCTCCATTCCT 59.454 44.000 0.00 0.00 0.00 3.36
4189 4894 5.308237 ACACAGATTATACTCCCTCCATTCC 59.692 44.000 0.00 0.00 0.00 3.01
4190 4895 6.042093 TGACACAGATTATACTCCCTCCATTC 59.958 42.308 0.00 0.00 0.00 2.67
4191 4896 5.905331 TGACACAGATTATACTCCCTCCATT 59.095 40.000 0.00 0.00 0.00 3.16
4192 4897 5.467738 TGACACAGATTATACTCCCTCCAT 58.532 41.667 0.00 0.00 0.00 3.41
4193 4898 4.878968 TGACACAGATTATACTCCCTCCA 58.121 43.478 0.00 0.00 0.00 3.86
4194 4899 6.183361 ACAATGACACAGATTATACTCCCTCC 60.183 42.308 0.00 0.00 0.00 4.30
4195 4900 6.821388 ACAATGACACAGATTATACTCCCTC 58.179 40.000 0.00 0.00 0.00 4.30
4196 4901 6.814954 ACAATGACACAGATTATACTCCCT 57.185 37.500 0.00 0.00 0.00 4.20
4197 4902 7.047891 TCAACAATGACACAGATTATACTCCC 58.952 38.462 0.00 0.00 0.00 4.30
4198 4903 8.391106 GTTCAACAATGACACAGATTATACTCC 58.609 37.037 0.00 0.00 34.61 3.85
4199 4904 8.935844 TGTTCAACAATGACACAGATTATACTC 58.064 33.333 0.00 0.00 34.61 2.59
4200 4905 8.846943 TGTTCAACAATGACACAGATTATACT 57.153 30.769 0.00 0.00 34.61 2.12
4210 4915 5.702865 ACATAGCATGTTCAACAATGACAC 58.297 37.500 6.89 0.00 41.63 3.67
4296 5006 4.526650 TGTTAGCTATGTCCTGTCAGTTCA 59.473 41.667 0.00 0.00 0.00 3.18
4364 5074 2.819608 CCGTTATGCCCAATCCCAATAG 59.180 50.000 0.00 0.00 0.00 1.73
4600 5310 1.135112 GCCTGAAATTAACAAGGGGCG 60.135 52.381 0.00 0.00 0.00 6.13
4609 5319 5.735922 GCACACAGTTTCTGCCTGAAATTAA 60.736 40.000 0.00 0.00 45.19 1.40
4610 5320 4.261572 GCACACAGTTTCTGCCTGAAATTA 60.262 41.667 0.00 0.00 45.19 1.40
4611 5321 3.491447 GCACACAGTTTCTGCCTGAAATT 60.491 43.478 0.00 0.00 45.19 1.82
4612 5322 2.035066 GCACACAGTTTCTGCCTGAAAT 59.965 45.455 0.00 0.00 45.19 2.17
4642 5352 4.341366 TGGTGGCTGATCACATATACAG 57.659 45.455 0.00 0.00 39.27 2.74
4813 5523 2.639065 TCGGCTTTGTTTTCAGTGACT 58.361 42.857 0.00 0.00 0.00 3.41
4831 5541 0.320247 ACACTTGGCAGAGCTCTTCG 60.320 55.000 15.27 4.92 0.00 3.79
4870 5580 7.831193 GGCATCCTACAAATCATACATATTCCT 59.169 37.037 0.00 0.00 0.00 3.36
4872 5582 7.201644 CGGGCATCCTACAAATCATACATATTC 60.202 40.741 0.00 0.00 0.00 1.75
4898 5608 4.035208 ACACAAAACTTTCTCCGACATGTC 59.965 41.667 16.21 16.21 0.00 3.06
4920 5630 6.978080 TCAAAAATTGGTGTCTTCTTAAGCAC 59.022 34.615 0.00 0.00 35.91 4.40
4928 5638 3.067601 ACCGGTCAAAAATTGGTGTCTTC 59.932 43.478 0.00 0.00 0.00 2.87
4945 5655 1.351017 ACTGACAATCAATGGACCGGT 59.649 47.619 6.92 6.92 0.00 5.28
5014 5726 3.070734 AGCACTCACAAATGTGTCTCTCT 59.929 43.478 12.87 3.66 45.76 3.10
5017 5729 4.201950 ACAAAGCACTCACAAATGTGTCTC 60.202 41.667 12.87 2.59 45.76 3.36
5037 5749 5.181009 CAGATGAAGATTACCAGCTGACAA 58.819 41.667 17.39 8.92 46.32 3.18
5044 5756 3.525537 ACACGCAGATGAAGATTACCAG 58.474 45.455 0.00 0.00 0.00 4.00
5129 5842 2.159572 GGCATAAAGTTACCGCACACAG 60.160 50.000 0.00 0.00 0.00 3.66
5258 5982 6.038161 GGTTCCCTTTTTCATTTCCAACAAAG 59.962 38.462 0.00 0.00 0.00 2.77
5270 5994 6.306643 AGACAAAATTGGTTCCCTTTTTCA 57.693 33.333 0.00 0.00 0.00 2.69
5271 5995 7.011389 CAGAAGACAAAATTGGTTCCCTTTTTC 59.989 37.037 0.00 0.00 0.00 2.29
5276 6002 4.342092 CACAGAAGACAAAATTGGTTCCCT 59.658 41.667 0.00 0.00 0.00 4.20
5295 6021 1.093159 GCTGAGGATGGAAAGCACAG 58.907 55.000 0.00 0.00 35.69 3.66
5297 6023 1.538047 TTGCTGAGGATGGAAAGCAC 58.462 50.000 0.00 0.00 44.88 4.40
5312 6038 3.486383 TCCGGAGATCAAAACTTTTGCT 58.514 40.909 0.00 0.08 0.00 3.91
5332 6058 3.056821 GGTTGGCACTAGACCCAAATTTC 60.057 47.826 16.60 7.70 42.32 2.17
5378 6111 9.739276 ACAACTATGGAAATTGTTGATAAGAGA 57.261 29.630 16.26 0.00 41.35 3.10
5441 6178 6.312399 TGAATTGCTCGTATTTTGTGTTCT 57.688 33.333 0.00 0.00 0.00 3.01
5482 6219 4.699925 AACTGGTAAAGCCTAGTGTTCA 57.300 40.909 0.00 0.00 38.35 3.18
5488 6225 7.331791 AGAAACAGATAACTGGTAAAGCCTAG 58.668 38.462 4.89 0.00 43.96 3.02
5494 6236 9.042450 TCATCCTAGAAACAGATAACTGGTAAA 57.958 33.333 4.89 0.00 43.96 2.01
5519 6261 5.637387 AGCTTTGAGATTTCGAGAAGAAGTC 59.363 40.000 0.00 0.00 43.43 3.01
5521 6263 7.588143 TTAGCTTTGAGATTTCGAGAAGAAG 57.412 36.000 0.00 0.00 40.40 2.85
5527 6269 5.163814 CCACCTTTAGCTTTGAGATTTCGAG 60.164 44.000 0.00 0.00 0.00 4.04
5551 6293 2.328819 ATGAGATTCCAGCTCAGCAC 57.671 50.000 0.00 0.00 44.75 4.40
5552 6294 2.026542 ACAATGAGATTCCAGCTCAGCA 60.027 45.455 0.00 0.00 44.75 4.41
5553 6295 2.641305 ACAATGAGATTCCAGCTCAGC 58.359 47.619 0.00 0.00 44.75 4.26
5572 6314 6.570692 TGGTTCATTACTCGAGAATCCTTAC 58.429 40.000 21.68 8.35 0.00 2.34
5583 6325 4.402056 AGTACCCATGGTTCATTACTCG 57.598 45.455 11.73 0.00 37.09 4.18
5585 6327 5.486063 TGTGTAGTACCCATGGTTCATTACT 59.514 40.000 11.73 10.85 37.09 2.24
5595 6337 7.331934 GCACATATATTCTGTGTAGTACCCATG 59.668 40.741 15.52 0.00 44.62 3.66
5597 6339 6.553476 AGCACATATATTCTGTGTAGTACCCA 59.447 38.462 15.52 0.00 44.62 4.51
5627 6369 2.906354 ACTTATCGGAGGTGATTGTGC 58.094 47.619 0.00 0.00 0.00 4.57
5628 6370 4.508124 GCTTACTTATCGGAGGTGATTGTG 59.492 45.833 0.00 0.00 0.00 3.33
5673 6445 2.093500 TGGACCTTGATGATCAACCTCG 60.093 50.000 3.29 0.00 32.21 4.63
5682 6454 2.025981 CCCTCACAATGGACCTTGATGA 60.026 50.000 9.74 8.58 0.00 2.92
5717 6490 1.592669 CCTCTCGCTTGGCATACCG 60.593 63.158 0.00 0.00 39.70 4.02
5746 6519 1.800315 CTGGTCGGTAACTGCGTCG 60.800 63.158 0.00 0.00 0.00 5.12
5747 6520 1.445582 CCTGGTCGGTAACTGCGTC 60.446 63.158 0.00 0.00 0.00 5.19
5750 6523 1.375523 CCACCTGGTCGGTAACTGC 60.376 63.158 0.00 0.00 46.94 4.40
5847 6620 8.165428 TGTTTTCTTTTGTTTTAATCTTGTGCG 58.835 29.630 0.00 0.00 0.00 5.34
5901 6674 9.646427 GATCCTTTGTCCAGTATATATGAGAAC 57.354 37.037 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.