Multiple sequence alignment - TraesCS3B01G100200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G100200 chr3B 100.000 4505 0 0 1 4505 66806418 66801914 0.000000e+00 8320
1 TraesCS3B01G100200 chr3B 91.783 572 35 6 3942 4505 754763273 754763840 0.000000e+00 785
2 TraesCS3B01G100200 chr3D 96.232 3583 102 12 949 4503 42892887 42889310 0.000000e+00 5838
3 TraesCS3B01G100200 chr3D 93.325 794 42 7 1 793 42894177 42893394 0.000000e+00 1162
4 TraesCS3B01G100200 chr3A 96.525 3137 70 11 949 4071 54886015 54882904 0.000000e+00 5153
5 TraesCS3B01G100200 chr3A 86.359 887 67 19 4 871 54930209 54929358 0.000000e+00 918
6 TraesCS3B01G100200 chr3A 96.372 441 9 3 4070 4505 54882742 54882304 0.000000e+00 719
7 TraesCS3B01G100200 chr3A 90.064 312 21 5 321 632 54936069 54935768 3.270000e-106 396
8 TraesCS3B01G100200 chr6B 91.156 588 31 10 3925 4503 49374501 49373926 0.000000e+00 778
9 TraesCS3B01G100200 chr6B 90.476 483 33 6 4031 4505 706234663 706235140 3.830000e-175 625
10 TraesCS3B01G100200 chr6B 89.786 421 33 5 4091 4503 706029555 706029973 8.580000e-147 531
11 TraesCS3B01G100200 chr7A 86.103 662 62 12 3637 4288 31952835 31952194 0.000000e+00 686
12 TraesCS3B01G100200 chr7A 85.952 662 63 12 3637 4288 31924586 31923945 0.000000e+00 680
13 TraesCS3B01G100200 chr4B 86.441 649 61 10 3650 4288 646220696 646221327 0.000000e+00 686
14 TraesCS3B01G100200 chr4B 86.441 649 59 11 3650 4288 351618007 351617378 0.000000e+00 684
15 TraesCS3B01G100200 chr1B 86.036 666 61 12 3633 4288 330226497 330227140 0.000000e+00 686
16 TraesCS3B01G100200 chrUn 85.952 662 63 12 3637 4288 317739980 317739339 0.000000e+00 680
17 TraesCS3B01G100200 chrUn 86.133 649 63 10 3650 4288 79772337 79772968 0.000000e+00 675
18 TraesCS3B01G100200 chr5B 90.428 491 35 6 4023 4505 119416390 119416876 1.770000e-178 636
19 TraesCS3B01G100200 chr2B 89.817 491 38 6 4023 4505 17578173 17577687 1.780000e-173 619
20 TraesCS3B01G100200 chr2B 91.317 334 26 3 3636 3967 770715784 770715452 1.910000e-123 453
21 TraesCS3B01G100200 chr7B 89.021 337 30 6 3636 3967 704462484 704462818 1.170000e-110 411
22 TraesCS3B01G100200 chr7D 90.429 303 23 4 3626 3926 618365741 618366039 1.170000e-105 394
23 TraesCS3B01G100200 chr7D 90.576 191 13 4 4317 4505 618370166 618370353 9.680000e-62 248
24 TraesCS3B01G100200 chr2A 94.667 225 12 0 2494 2718 266078002 266078226 2.580000e-92 350
25 TraesCS3B01G100200 chr2A 93.413 167 11 0 2712 2878 266083551 266083717 9.680000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G100200 chr3B 66801914 66806418 4504 True 8320 8320 100.0000 1 4505 1 chr3B.!!$R1 4504
1 TraesCS3B01G100200 chr3B 754763273 754763840 567 False 785 785 91.7830 3942 4505 1 chr3B.!!$F1 563
2 TraesCS3B01G100200 chr3D 42889310 42894177 4867 True 3500 5838 94.7785 1 4503 2 chr3D.!!$R1 4502
3 TraesCS3B01G100200 chr3A 54882304 54886015 3711 True 2936 5153 96.4485 949 4505 2 chr3A.!!$R3 3556
4 TraesCS3B01G100200 chr3A 54929358 54930209 851 True 918 918 86.3590 4 871 1 chr3A.!!$R1 867
5 TraesCS3B01G100200 chr6B 49373926 49374501 575 True 778 778 91.1560 3925 4503 1 chr6B.!!$R1 578
6 TraesCS3B01G100200 chr7A 31952194 31952835 641 True 686 686 86.1030 3637 4288 1 chr7A.!!$R2 651
7 TraesCS3B01G100200 chr7A 31923945 31924586 641 True 680 680 85.9520 3637 4288 1 chr7A.!!$R1 651
8 TraesCS3B01G100200 chr4B 646220696 646221327 631 False 686 686 86.4410 3650 4288 1 chr4B.!!$F1 638
9 TraesCS3B01G100200 chr4B 351617378 351618007 629 True 684 684 86.4410 3650 4288 1 chr4B.!!$R1 638
10 TraesCS3B01G100200 chr1B 330226497 330227140 643 False 686 686 86.0360 3633 4288 1 chr1B.!!$F1 655
11 TraesCS3B01G100200 chrUn 317739339 317739980 641 True 680 680 85.9520 3637 4288 1 chrUn.!!$R1 651
12 TraesCS3B01G100200 chrUn 79772337 79772968 631 False 675 675 86.1330 3650 4288 1 chrUn.!!$F1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 1329 0.107945 GAGGCAGCTCGGAATCACTT 60.108 55.0 0.0 0.0 0.00 3.16 F
1893 2271 0.904511 CGCACAACGTGTTTGTCAAC 59.095 50.0 0.0 0.0 46.05 3.18 F
2540 2918 1.228533 GCAAAATGTGGCTGTTTGGG 58.771 50.0 0.0 0.0 33.72 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2526 2904 0.540365 CCTCACCCAAACAGCCACAT 60.540 55.000 0.0 0.0 0.00 3.21 R
2815 3193 2.288030 CCACCCGACCTAATGTATCGAC 60.288 54.545 0.0 0.0 38.10 4.20 R
4258 4834 4.641541 TGTCATTTATGGCACTTGGATCAG 59.358 41.667 0.0 0.0 37.51 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 7.254455 CGTATTCATTAAGACCAGATGACCAAC 60.254 40.741 0.00 0.00 30.10 3.77
307 308 5.235850 TCAGTAGGCAATAAACTGAACCA 57.764 39.130 2.09 0.00 44.89 3.67
465 468 7.520798 TCATCTTCCTATTGTATGCTTTGGAT 58.479 34.615 0.00 0.00 0.00 3.41
466 469 8.659527 TCATCTTCCTATTGTATGCTTTGGATA 58.340 33.333 0.00 0.00 0.00 2.59
467 470 8.944029 CATCTTCCTATTGTATGCTTTGGATAG 58.056 37.037 0.00 0.00 0.00 2.08
468 471 6.936900 TCTTCCTATTGTATGCTTTGGATAGC 59.063 38.462 0.00 0.00 41.59 2.97
504 507 2.168728 GGAAGGTCTCATCACCACTACC 59.831 54.545 0.00 0.00 39.16 3.18
519 523 3.606687 CACTACCGGCTAAAAATGGAGT 58.393 45.455 0.00 0.00 0.00 3.85
530 534 9.203421 CGGCTAAAAATGGAGTTTCTTAAAAAT 57.797 29.630 0.00 0.00 0.00 1.82
583 587 8.503428 ACCAGAGAGATAGATGAACCATAATT 57.497 34.615 0.00 0.00 0.00 1.40
599 603 7.050970 ACCATAATTCAGTATTGTAGCTCGA 57.949 36.000 0.00 0.00 0.00 4.04
600 604 7.671302 ACCATAATTCAGTATTGTAGCTCGAT 58.329 34.615 0.00 0.00 0.00 3.59
601 605 7.815068 ACCATAATTCAGTATTGTAGCTCGATC 59.185 37.037 0.00 0.00 0.00 3.69
602 606 7.008719 CCATAATTCAGTATTGTAGCTCGATCG 59.991 40.741 9.36 9.36 0.00 3.69
611 615 2.290916 TGTAGCTCGATCGGAATCACTC 59.709 50.000 16.41 0.00 31.76 3.51
613 617 1.272114 GCTCGATCGGAATCACTCGC 61.272 60.000 16.41 1.02 31.76 5.03
616 620 0.386100 CGATCGGAATCACTCGCGAT 60.386 55.000 10.36 0.00 39.00 4.58
625 629 4.437440 GAATCACTCGCGATATGTTTTCG 58.563 43.478 10.36 0.00 39.55 3.46
705 709 4.215613 ACGGAGCTTGTAAACCAAATCTTC 59.784 41.667 0.00 0.00 31.20 2.87
736 740 3.890756 TGATGCCGAGGAAATATGCAAAT 59.109 39.130 0.00 0.00 35.30 2.32
758 762 1.766496 CCGTATCCCAACCAGTACCAT 59.234 52.381 0.00 0.00 0.00 3.55
760 764 2.432874 CGTATCCCAACCAGTACCATCA 59.567 50.000 0.00 0.00 0.00 3.07
772 776 2.509548 AGTACCATCAAGGGCTGCATTA 59.490 45.455 0.50 0.00 43.89 1.90
836 864 3.253230 GAACTCATGGAATTTTTGCCGG 58.747 45.455 0.00 0.00 0.00 6.13
845 873 0.958822 ATTTTTGCCGGCTCGAGTTT 59.041 45.000 29.70 3.38 0.00 2.66
874 902 1.009675 GCATATGTTTGCCGCCTCG 60.010 57.895 4.29 0.00 36.60 4.63
875 903 1.436195 GCATATGTTTGCCGCCTCGA 61.436 55.000 4.29 0.00 36.60 4.04
877 905 0.178068 ATATGTTTGCCGCCTCGAGT 59.822 50.000 12.31 0.00 0.00 4.18
878 906 0.459585 TATGTTTGCCGCCTCGAGTC 60.460 55.000 12.31 0.00 0.00 3.36
881 909 3.589654 TTTGCCGCCTCGAGTCTGG 62.590 63.158 12.31 10.82 0.00 3.86
883 911 4.500116 GCCGCCTCGAGTCTGGTC 62.500 72.222 12.31 3.15 0.00 4.02
884 912 3.827898 CCGCCTCGAGTCTGGTCC 61.828 72.222 12.31 0.00 0.00 4.46
885 913 3.827898 CGCCTCGAGTCTGGTCCC 61.828 72.222 12.31 0.00 0.00 4.46
887 915 2.419739 GCCTCGAGTCTGGTCCCTC 61.420 68.421 12.31 0.00 0.00 4.30
888 916 1.755008 CCTCGAGTCTGGTCCCTCC 60.755 68.421 12.31 0.00 0.00 4.30
889 917 1.304952 CTCGAGTCTGGTCCCTCCT 59.695 63.158 3.62 0.00 37.07 3.69
890 918 0.323908 CTCGAGTCTGGTCCCTCCTT 60.324 60.000 3.62 0.00 37.07 3.36
891 919 0.323542 TCGAGTCTGGTCCCTCCTTC 60.324 60.000 0.00 0.00 37.07 3.46
892 920 1.324005 CGAGTCTGGTCCCTCCTTCC 61.324 65.000 0.00 0.00 37.07 3.46
910 1275 3.407424 TCCTGACAACTGACAATGGAG 57.593 47.619 0.00 0.00 0.00 3.86
914 1279 4.244066 CTGACAACTGACAATGGAGAGAG 58.756 47.826 0.00 0.00 0.00 3.20
915 1280 3.007290 TGACAACTGACAATGGAGAGAGG 59.993 47.826 0.00 0.00 0.00 3.69
916 1281 2.289945 ACAACTGACAATGGAGAGAGGC 60.290 50.000 0.00 0.00 0.00 4.70
918 1283 2.194859 ACTGACAATGGAGAGAGGCAT 58.805 47.619 0.00 0.00 0.00 4.40
919 1284 2.170187 ACTGACAATGGAGAGAGGCATC 59.830 50.000 0.00 0.00 0.00 3.91
921 1286 1.137872 GACAATGGAGAGAGGCATCGT 59.862 52.381 0.00 0.00 0.00 3.73
922 1287 1.556911 ACAATGGAGAGAGGCATCGTT 59.443 47.619 0.00 0.00 0.00 3.85
923 1288 2.026822 ACAATGGAGAGAGGCATCGTTT 60.027 45.455 0.00 0.00 0.00 3.60
924 1289 3.012518 CAATGGAGAGAGGCATCGTTTT 58.987 45.455 0.00 0.00 0.00 2.43
925 1290 2.859165 TGGAGAGAGGCATCGTTTTT 57.141 45.000 0.00 0.00 0.00 1.94
964 1329 0.107945 GAGGCAGCTCGGAATCACTT 60.108 55.000 0.00 0.00 0.00 3.16
1164 1542 2.264480 CGCATGGTCAAGACGGGA 59.736 61.111 0.00 0.00 0.00 5.14
1470 1848 3.011517 ATGCTCAGGGAGGGCGTT 61.012 61.111 0.00 0.00 0.00 4.84
1560 1938 1.966451 CCCTTTCGCCGTCAAGCTT 60.966 57.895 0.00 0.00 0.00 3.74
1623 2001 1.746615 CGCCTACTGCAAGCATGGT 60.747 57.895 0.00 0.00 41.33 3.55
1674 2052 3.005539 ATGCCGCACAGGGACTCT 61.006 61.111 0.00 0.00 45.60 3.24
1755 2133 3.326588 TGGGCCTATTTACTGATATGCGT 59.673 43.478 4.53 0.00 0.00 5.24
1893 2271 0.904511 CGCACAACGTGTTTGTCAAC 59.095 50.000 0.00 0.00 46.05 3.18
2526 2904 3.252215 CCCTTCTTGACATGTACGCAAAA 59.748 43.478 0.00 0.00 0.00 2.44
2540 2918 1.228533 GCAAAATGTGGCTGTTTGGG 58.771 50.000 0.00 0.00 33.72 4.12
2589 2967 2.437281 GCCTGAGAGGAATTCCATCTCA 59.563 50.000 32.29 32.29 42.48 3.27
2844 3222 1.535204 TAGGTCGGGTGGGACGTTTC 61.535 60.000 0.00 0.00 37.82 2.78
2871 3249 4.474226 AGTTCAGAAAATGTTGAGCGAC 57.526 40.909 0.00 0.00 30.93 5.19
2889 3267 3.243301 GCGACATGCCATTTGAAGATGAT 60.243 43.478 0.00 0.00 37.76 2.45
3068 3446 1.662026 CGCTGCCCGTGTTAAAAAGAC 60.662 52.381 0.00 0.00 0.00 3.01
3129 3507 5.348451 CAGTTGGGTTGAAGTCAAACAAAAG 59.652 40.000 11.05 0.00 45.01 2.27
3744 4123 2.342910 ACTGTACGTAAGGCTTGACG 57.657 50.000 20.10 20.10 44.57 4.35
3930 4315 7.602644 TCTGTAGCTGTAGGTGATAACTTTTTG 59.397 37.037 0.00 0.00 0.00 2.44
4304 4880 8.863872 ACACAAGATACTTAGCTTTTAATGGT 57.136 30.769 0.00 0.00 27.90 3.55
4325 4901 9.607988 AATGGTATATCAATGTCTTCACGTTAA 57.392 29.630 0.00 0.00 30.01 2.01
4474 5052 2.995574 CTCTGGGTCGTCCGGGTT 60.996 66.667 0.00 0.00 42.31 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 6.916360 ATGCAAGAAACTTGGGAAAGAATA 57.084 33.333 12.36 0.00 0.00 1.75
24 25 5.612725 AATGCAAGAAACTTGGGAAAGAA 57.387 34.783 12.36 0.00 0.00 2.52
30 31 5.816449 AAACAAAATGCAAGAAACTTGGG 57.184 34.783 12.36 0.00 0.00 4.12
131 132 2.886862 TGGACTTTTTGTGTGCATGG 57.113 45.000 0.00 0.00 31.06 3.66
381 384 1.202290 GCAACATTGGTTATCTGGCCG 60.202 52.381 0.00 0.00 34.87 6.13
440 443 6.899089 TCCAAAGCATACAATAGGAAGATGA 58.101 36.000 0.00 0.00 0.00 2.92
441 444 7.756395 ATCCAAAGCATACAATAGGAAGATG 57.244 36.000 0.00 0.00 0.00 2.90
465 468 5.080337 CCTTCCTCTGTAGGTGATATGCTA 58.920 45.833 0.00 0.00 44.09 3.49
466 469 3.900601 CCTTCCTCTGTAGGTGATATGCT 59.099 47.826 0.00 0.00 44.09 3.79
467 470 3.643792 ACCTTCCTCTGTAGGTGATATGC 59.356 47.826 0.00 0.00 40.43 3.14
468 471 5.144100 AGACCTTCCTCTGTAGGTGATATG 58.856 45.833 0.00 0.00 41.85 1.78
469 472 5.103473 TGAGACCTTCCTCTGTAGGTGATAT 60.103 44.000 0.00 0.00 41.85 1.63
470 473 4.229812 TGAGACCTTCCTCTGTAGGTGATA 59.770 45.833 0.00 0.00 41.85 2.15
504 507 8.582433 TTTTTAAGAAACTCCATTTTTAGCCG 57.418 30.769 0.00 0.00 0.00 5.52
539 543 3.493334 GGTTGCCTACCTTTGGTTTACT 58.507 45.455 0.00 0.00 44.10 2.24
561 565 9.378504 ACTGAATTATGGTTCATCTATCTCTCT 57.621 33.333 0.00 0.00 37.47 3.10
583 587 3.473625 TCCGATCGAGCTACAATACTGA 58.526 45.455 18.66 0.00 0.00 3.41
599 603 2.229062 ACATATCGCGAGTGATTCCGAT 59.771 45.455 25.30 4.21 40.19 4.18
600 604 1.607148 ACATATCGCGAGTGATTCCGA 59.393 47.619 25.30 0.00 34.54 4.55
601 605 2.051879 ACATATCGCGAGTGATTCCG 57.948 50.000 25.30 7.25 0.00 4.30
602 606 4.606232 CGAAAACATATCGCGAGTGATTCC 60.606 45.833 25.30 11.13 33.07 3.01
611 615 4.948864 ACAGATACGAAAACATATCGCG 57.051 40.909 0.00 0.00 43.88 5.87
613 617 6.474364 TGCAAACAGATACGAAAACATATCG 58.526 36.000 0.00 0.00 45.47 2.92
641 645 5.355350 CCCTCCTTCATAAGTTGATTGTCAC 59.645 44.000 0.00 0.00 33.34 3.67
642 646 5.500234 CCCTCCTTCATAAGTTGATTGTCA 58.500 41.667 0.00 0.00 33.34 3.58
644 648 4.292306 ACCCCTCCTTCATAAGTTGATTGT 59.708 41.667 0.00 0.00 33.34 2.71
684 688 4.522789 TGGAAGATTTGGTTTACAAGCTCC 59.477 41.667 0.00 0.00 40.82 4.70
736 740 1.832998 GGTACTGGTTGGGATACGGAA 59.167 52.381 0.00 0.00 37.60 4.30
758 762 1.766494 CCACATAATGCAGCCCTTGA 58.234 50.000 0.00 0.00 0.00 3.02
760 764 0.324552 TGCCACATAATGCAGCCCTT 60.325 50.000 0.00 0.00 32.77 3.95
772 776 5.301551 TGTTTGACTTTTCATAGTGCCACAT 59.698 36.000 0.00 0.00 0.00 3.21
836 864 1.801178 CCTTTCCAGACAAACTCGAGC 59.199 52.381 13.61 0.00 0.00 5.03
845 873 3.193267 GCAAACATATGCCTTTCCAGACA 59.807 43.478 1.58 0.00 40.49 3.41
868 896 3.827898 GGGACCAGACTCGAGGCG 61.828 72.222 18.41 10.22 0.00 5.52
871 899 0.323908 AAGGAGGGACCAGACTCGAG 60.324 60.000 11.84 11.84 42.04 4.04
873 901 1.324005 GGAAGGAGGGACCAGACTCG 61.324 65.000 0.00 0.00 42.04 4.18
874 902 0.041982 AGGAAGGAGGGACCAGACTC 59.958 60.000 0.00 0.00 42.04 3.36
875 903 0.252467 CAGGAAGGAGGGACCAGACT 60.252 60.000 0.00 0.00 42.04 3.24
877 905 0.252284 GTCAGGAAGGAGGGACCAGA 60.252 60.000 0.00 0.00 42.04 3.86
878 906 0.545309 TGTCAGGAAGGAGGGACCAG 60.545 60.000 0.00 0.00 42.04 4.00
881 909 1.002544 CAGTTGTCAGGAAGGAGGGAC 59.997 57.143 0.00 0.00 0.00 4.46
882 910 1.132849 TCAGTTGTCAGGAAGGAGGGA 60.133 52.381 0.00 0.00 0.00 4.20
883 911 1.002544 GTCAGTTGTCAGGAAGGAGGG 59.997 57.143 0.00 0.00 0.00 4.30
884 912 1.694150 TGTCAGTTGTCAGGAAGGAGG 59.306 52.381 0.00 0.00 0.00 4.30
885 913 3.475566 TTGTCAGTTGTCAGGAAGGAG 57.524 47.619 0.00 0.00 0.00 3.69
887 915 2.816087 CCATTGTCAGTTGTCAGGAAGG 59.184 50.000 0.00 0.00 0.00 3.46
888 916 3.743521 TCCATTGTCAGTTGTCAGGAAG 58.256 45.455 0.00 0.00 0.00 3.46
889 917 3.390967 TCTCCATTGTCAGTTGTCAGGAA 59.609 43.478 0.00 0.00 0.00 3.36
890 918 2.972021 TCTCCATTGTCAGTTGTCAGGA 59.028 45.455 0.00 0.00 0.00 3.86
891 919 3.007290 TCTCTCCATTGTCAGTTGTCAGG 59.993 47.826 0.00 0.00 0.00 3.86
892 920 4.244066 CTCTCTCCATTGTCAGTTGTCAG 58.756 47.826 0.00 0.00 0.00 3.51
927 1292 3.562176 GCCTCTCTCCAATCCCTCAAAAA 60.562 47.826 0.00 0.00 0.00 1.94
929 1294 1.561542 GCCTCTCTCCAATCCCTCAAA 59.438 52.381 0.00 0.00 0.00 2.69
930 1295 1.207791 GCCTCTCTCCAATCCCTCAA 58.792 55.000 0.00 0.00 0.00 3.02
931 1296 0.043183 TGCCTCTCTCCAATCCCTCA 59.957 55.000 0.00 0.00 0.00 3.86
933 1298 1.344191 GCTGCCTCTCTCCAATCCCT 61.344 60.000 0.00 0.00 0.00 4.20
936 1301 0.249405 CGAGCTGCCTCTCTCCAATC 60.249 60.000 0.00 0.00 35.90 2.67
937 1302 1.684386 CCGAGCTGCCTCTCTCCAAT 61.684 60.000 0.00 0.00 35.90 3.16
938 1303 2.354401 CCGAGCTGCCTCTCTCCAA 61.354 63.158 0.00 0.00 35.90 3.53
939 1304 2.757508 CCGAGCTGCCTCTCTCCA 60.758 66.667 0.00 0.00 35.90 3.86
940 1305 1.398958 ATTCCGAGCTGCCTCTCTCC 61.399 60.000 0.00 0.00 35.90 3.71
941 1306 0.031994 GATTCCGAGCTGCCTCTCTC 59.968 60.000 0.00 0.00 35.90 3.20
942 1307 0.685785 TGATTCCGAGCTGCCTCTCT 60.686 55.000 0.00 0.00 35.90 3.10
943 1308 0.529555 GTGATTCCGAGCTGCCTCTC 60.530 60.000 0.00 0.00 35.90 3.20
944 1309 0.975040 AGTGATTCCGAGCTGCCTCT 60.975 55.000 0.00 0.00 35.90 3.69
945 1310 0.107945 AAGTGATTCCGAGCTGCCTC 60.108 55.000 0.00 0.00 34.66 4.70
946 1311 0.392193 CAAGTGATTCCGAGCTGCCT 60.392 55.000 0.00 0.00 0.00 4.75
947 1312 1.372087 CCAAGTGATTCCGAGCTGCC 61.372 60.000 0.00 0.00 0.00 4.85
964 1329 3.342627 CAAGCGTCGCCGTTTCCA 61.343 61.111 14.86 0.00 35.18 3.53
1241 1619 0.608035 GGGCATTTGGTCGAACAGGA 60.608 55.000 2.09 0.00 0.00 3.86
1674 2052 3.054508 TCATCATGGCATTGTAGGTGACA 60.055 43.478 0.00 0.00 39.30 3.58
1893 2271 3.997021 AGTAGAAATCCAGCAACGAGTTG 59.003 43.478 11.29 11.29 43.14 3.16
2526 2904 0.540365 CCTCACCCAAACAGCCACAT 60.540 55.000 0.00 0.00 0.00 3.21
2540 2918 0.598065 AAATGTTTGGAGCGCCTCAC 59.402 50.000 8.34 4.84 34.31 3.51
2691 3069 5.509163 GGCTGACAGTACACTCAAGAAAGTA 60.509 44.000 3.99 0.00 0.00 2.24
2694 3072 3.388024 AGGCTGACAGTACACTCAAGAAA 59.612 43.478 3.99 0.00 0.00 2.52
2815 3193 2.288030 CCACCCGACCTAATGTATCGAC 60.288 54.545 0.00 0.00 38.10 4.20
2844 3222 6.247165 CGCTCAACATTTTCTGAACTTTATCG 59.753 38.462 0.00 0.00 0.00 2.92
2871 3249 4.929819 TGGATCATCTTCAAATGGCATG 57.070 40.909 0.00 0.00 0.00 4.06
3068 3446 6.985653 TCCTAAGTCCTCTATTTCTCATGG 57.014 41.667 0.00 0.00 0.00 3.66
3129 3507 7.094634 TGGTCATTTGAAGAAAAGCTGTAGATC 60.095 37.037 0.00 0.00 0.00 2.75
3655 4033 9.277565 CTATGAACATGAAAGAAAAATACACCG 57.722 33.333 0.00 0.00 0.00 4.94
3744 4123 6.040504 CCCTTAGTTATTTGAAATGGGGTAGC 59.959 42.308 0.00 0.00 0.00 3.58
3810 4189 6.991531 ACTGAAACAAAAACATGCCATACAAT 59.008 30.769 0.00 0.00 0.00 2.71
3967 4352 8.795786 TTTGTATCTGGTTTTCAAAGATTTCG 57.204 30.769 0.00 0.00 32.92 3.46
4084 4645 7.689446 ATTTCATGATCAAGATAGGCAGATG 57.311 36.000 0.00 0.00 0.00 2.90
4258 4834 4.641541 TGTCATTTATGGCACTTGGATCAG 59.358 41.667 0.00 0.00 37.51 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.