Multiple sequence alignment - TraesCS3B01G099700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G099700 chr3B 100.000 3793 0 0 1 3793 66614473 66610681 0.000000e+00 7005
1 TraesCS3B01G099700 chr3B 88.586 1761 137 43 1087 2797 66714631 66712885 0.000000e+00 2080
2 TraesCS3B01G099700 chr3B 86.117 1988 201 49 904 2856 66711150 66709203 0.000000e+00 2073
3 TraesCS3B01G099700 chr3B 88.682 1502 135 22 1020 2508 66599290 66597811 0.000000e+00 1799
4 TraesCS3B01G099700 chr3B 81.102 762 108 29 2141 2873 66707775 66707021 9.140000e-161 577
5 TraesCS3B01G099700 chr3B 85.397 315 38 7 2564 2873 66597700 66597389 1.700000e-83 320
6 TraesCS3B01G099700 chr3D 91.993 2323 130 24 977 3268 42790306 42792603 0.000000e+00 3208
7 TraesCS3B01G099700 chr3D 87.378 1949 166 45 904 2814 42787728 42785822 0.000000e+00 2163
8 TraesCS3B01G099700 chr3D 86.808 1933 192 40 904 2817 42847873 42845985 0.000000e+00 2098
9 TraesCS3B01G099700 chr3D 95.711 443 17 2 3353 3793 42792662 42793104 0.000000e+00 712
10 TraesCS3B01G099700 chr3D 84.416 462 55 13 2416 2873 42772827 42772379 4.500000e-119 438
11 TraesCS3B01G099700 chr3D 84.300 293 30 11 548 829 42789922 42790209 4.830000e-69 272
12 TraesCS3B01G099700 chr3D 94.805 77 4 0 438 514 42789844 42789920 1.850000e-23 121
13 TraesCS3B01G099700 chr3D 82.482 137 23 1 95 231 42789703 42789838 6.660000e-23 119
14 TraesCS3B01G099700 chr3D 100.000 40 0 0 3266 3305 42792624 42792663 1.460000e-09 75
15 TraesCS3B01G099700 chr3A 92.007 2252 157 14 902 3143 53416219 53413981 0.000000e+00 3140
16 TraesCS3B01G099700 chr3A 90.998 2255 174 18 899 3140 54804424 54806662 0.000000e+00 3013
17 TraesCS3B01G099700 chr3A 86.585 1558 162 31 979 2508 54876833 54875295 0.000000e+00 1676
18 TraesCS3B01G099700 chr3A 93.072 332 23 0 3462 3793 40296009 40296340 1.580000e-133 486
19 TraesCS3B01G099700 chr3A 83.648 477 46 19 447 910 53416804 53416347 1.630000e-113 420
20 TraesCS3B01G099700 chr3A 84.396 455 35 18 447 886 54803842 54804275 7.580000e-112 414
21 TraesCS3B01G099700 chr3A 89.744 234 24 0 2564 2797 54874969 54874736 2.210000e-77 300
22 TraesCS3B01G099700 chr2A 83.991 1874 216 52 979 2804 651996517 651994680 0.000000e+00 1722
23 TraesCS3B01G099700 chr2D 83.902 1876 206 61 979 2800 507434671 507432838 0.000000e+00 1703
24 TraesCS3B01G099700 chr2B 84.142 1772 207 41 1063 2787 596075883 596074139 0.000000e+00 1648
25 TraesCS3B01G099700 chr6B 93.694 222 7 1 3572 3793 632561011 632561225 3.650000e-85 326
26 TraesCS3B01G099700 chr5B 88.128 219 22 4 234 450 649421424 649421640 1.350000e-64 257
27 TraesCS3B01G099700 chr5B 87.923 207 21 2 234 437 666792301 666792506 1.360000e-59 241
28 TraesCS3B01G099700 chr5D 89.320 206 18 2 234 437 401319300 401319503 4.860000e-64 255
29 TraesCS3B01G099700 chr5D 86.818 220 29 0 234 453 240503501 240503720 2.930000e-61 246
30 TraesCS3B01G099700 chr5A 89.320 206 19 2 233 437 534574377 534574174 4.860000e-64 255
31 TraesCS3B01G099700 chr7D 88.406 207 19 5 237 440 631895537 631895333 1.050000e-60 244
32 TraesCS3B01G099700 chr7D 86.161 224 24 6 234 455 390080089 390080307 6.330000e-58 235
33 TraesCS3B01G099700 chr1B 87.678 211 24 2 237 446 349503075 349502866 1.050000e-60 244
34 TraesCS3B01G099700 chr1D 88.235 204 20 3 237 437 18864760 18864558 1.360000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G099700 chr3B 66610681 66614473 3792 True 7005.000000 7005 100.000000 1 3793 1 chr3B.!!$R1 3792
1 TraesCS3B01G099700 chr3B 66707021 66714631 7610 True 1576.666667 2080 85.268333 904 2873 3 chr3B.!!$R3 1969
2 TraesCS3B01G099700 chr3B 66597389 66599290 1901 True 1059.500000 1799 87.039500 1020 2873 2 chr3B.!!$R2 1853
3 TraesCS3B01G099700 chr3D 42785822 42787728 1906 True 2163.000000 2163 87.378000 904 2814 1 chr3D.!!$R2 1910
4 TraesCS3B01G099700 chr3D 42845985 42847873 1888 True 2098.000000 2098 86.808000 904 2817 1 chr3D.!!$R3 1913
5 TraesCS3B01G099700 chr3D 42789703 42793104 3401 False 751.166667 3208 91.548500 95 3793 6 chr3D.!!$F1 3698
6 TraesCS3B01G099700 chr3A 53413981 53416804 2823 True 1780.000000 3140 87.827500 447 3143 2 chr3A.!!$R1 2696
7 TraesCS3B01G099700 chr3A 54803842 54806662 2820 False 1713.500000 3013 87.697000 447 3140 2 chr3A.!!$F2 2693
8 TraesCS3B01G099700 chr3A 54874736 54876833 2097 True 988.000000 1676 88.164500 979 2797 2 chr3A.!!$R2 1818
9 TraesCS3B01G099700 chr2A 651994680 651996517 1837 True 1722.000000 1722 83.991000 979 2804 1 chr2A.!!$R1 1825
10 TraesCS3B01G099700 chr2D 507432838 507434671 1833 True 1703.000000 1703 83.902000 979 2800 1 chr2D.!!$R1 1821
11 TraesCS3B01G099700 chr2B 596074139 596075883 1744 True 1648.000000 1648 84.142000 1063 2787 1 chr2B.!!$R1 1724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.030638 TTTCTGAAACTTGCCTGCGC 59.969 50.0 0.0 0.0 0.0 6.09 F
382 383 0.037734 AGGGGGAAAAACAGCCGTAG 59.962 55.0 0.0 0.0 0.0 3.51 F
403 404 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.0 0.0 0.0 0.0 3.51 F
412 413 0.320247 GAGCACGGATGGGAGCATAG 60.320 60.0 0.0 0.0 0.0 2.23 F
1512 5346 0.620556 GGGAGAGGTTGAGCATGGAA 59.379 55.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1512 5346 0.817654 TCGACCGCATGAACAGATCT 59.182 50.000 0.0 0.0 0.0 2.75 R
2346 6291 0.113190 TGTCCTCTCTCCTCACAGCA 59.887 55.000 0.0 0.0 0.0 4.41 R
2439 6384 2.041686 GTCGTCGAGCCACCTCTCT 61.042 63.158 0.0 0.0 35.9 3.10 R
2582 6845 2.500229 CCCGCCTAAGTTGAACAAGAA 58.500 47.619 0.0 0.0 0.0 2.52 R
3644 10125 0.447801 CCCACTGTTGTTATCGCTGC 59.552 55.000 0.0 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.793252 GATGCAGTCACATCAAATAAAATTAGT 57.207 29.630 0.00 0.00 44.81 2.24
34 35 8.969121 TGCAGTCACATCAAATAAAATTAGTG 57.031 30.769 0.00 0.00 0.00 2.74
35 36 8.028354 TGCAGTCACATCAAATAAAATTAGTGG 58.972 33.333 0.00 0.00 0.00 4.00
36 37 8.243426 GCAGTCACATCAAATAAAATTAGTGGA 58.757 33.333 0.00 0.00 0.00 4.02
37 38 9.559958 CAGTCACATCAAATAAAATTAGTGGAC 57.440 33.333 0.00 0.00 0.00 4.02
38 39 9.295825 AGTCACATCAAATAAAATTAGTGGACA 57.704 29.630 0.00 0.00 0.00 4.02
39 40 9.906660 GTCACATCAAATAAAATTAGTGGACAA 57.093 29.630 0.00 0.00 0.00 3.18
40 41 9.906660 TCACATCAAATAAAATTAGTGGACAAC 57.093 29.630 0.00 0.00 0.00 3.32
41 42 9.912634 CACATCAAATAAAATTAGTGGACAACT 57.087 29.630 0.00 0.00 43.40 3.16
91 92 8.981724 AAAAGTTTCAAACTCAGAACTTAACC 57.018 30.769 2.45 0.00 41.91 2.85
92 93 7.696992 AAGTTTCAAACTCAGAACTTAACCA 57.303 32.000 2.45 0.00 41.91 3.67
93 94 7.696992 AGTTTCAAACTCAGAACTTAACCAA 57.303 32.000 0.00 0.00 37.02 3.67
94 95 8.117813 AGTTTCAAACTCAGAACTTAACCAAA 57.882 30.769 0.00 0.00 37.02 3.28
95 96 8.749354 AGTTTCAAACTCAGAACTTAACCAAAT 58.251 29.630 0.00 0.00 37.02 2.32
96 97 8.807581 GTTTCAAACTCAGAACTTAACCAAATG 58.192 33.333 0.00 0.00 0.00 2.32
128 129 2.838736 CTACCCAGCATGACACCATAC 58.161 52.381 0.00 0.00 39.69 2.39
138 139 7.148018 CCAGCATGACACCATACTTTCTTTATT 60.148 37.037 0.00 0.00 39.69 1.40
178 179 8.214364 TGGTGTAGTTGACCATATATATGCAAA 58.786 33.333 16.08 7.74 38.63 3.68
179 180 9.062524 GGTGTAGTTGACCATATATATGCAAAA 57.937 33.333 16.08 7.43 33.25 2.44
209 210 8.718158 TGCACCCATTTAATATATCATGGAAA 57.282 30.769 15.54 1.62 38.88 3.13
224 225 6.764308 TCATGGAAAGAATGAATCTGTTCC 57.236 37.500 0.00 10.11 41.18 3.62
225 226 5.355071 TCATGGAAAGAATGAATCTGTTCCG 59.645 40.000 0.00 0.00 42.32 4.30
231 232 7.486232 GGAAAGAATGAATCTGTTCCGATTTTC 59.514 37.037 0.00 0.00 38.79 2.29
234 235 6.881065 AGAATGAATCTGTTCCGATTTTCTGA 59.119 34.615 0.00 0.00 36.88 3.27
236 237 6.875948 TGAATCTGTTCCGATTTTCTGAAA 57.124 33.333 0.00 0.00 33.96 2.69
237 238 6.668323 TGAATCTGTTCCGATTTTCTGAAAC 58.332 36.000 1.58 0.00 33.96 2.78
238 239 6.486657 TGAATCTGTTCCGATTTTCTGAAACT 59.513 34.615 1.58 0.00 33.96 2.66
239 240 6.884280 ATCTGTTCCGATTTTCTGAAACTT 57.116 33.333 1.58 0.00 0.00 2.66
240 241 6.060028 TCTGTTCCGATTTTCTGAAACTTG 57.940 37.500 1.58 1.69 0.00 3.16
241 242 4.606961 TGTTCCGATTTTCTGAAACTTGC 58.393 39.130 1.58 0.00 0.00 4.01
242 243 3.915437 TCCGATTTTCTGAAACTTGCC 57.085 42.857 1.58 0.00 0.00 4.52
243 244 3.486383 TCCGATTTTCTGAAACTTGCCT 58.514 40.909 1.58 0.00 0.00 4.75
244 245 3.253188 TCCGATTTTCTGAAACTTGCCTG 59.747 43.478 1.58 0.00 0.00 4.85
245 246 2.982470 CGATTTTCTGAAACTTGCCTGC 59.018 45.455 1.58 0.00 0.00 4.85
246 247 2.490328 TTTTCTGAAACTTGCCTGCG 57.510 45.000 1.58 0.00 0.00 5.18
247 248 0.030638 TTTCTGAAACTTGCCTGCGC 59.969 50.000 0.00 0.00 0.00 6.09
248 249 1.795170 TTCTGAAACTTGCCTGCGCC 61.795 55.000 4.18 0.00 0.00 6.53
249 250 3.273080 CTGAAACTTGCCTGCGCCC 62.273 63.158 4.18 0.00 0.00 6.13
250 251 4.056125 GAAACTTGCCTGCGCCCC 62.056 66.667 4.18 0.00 0.00 5.80
271 272 4.969196 CGTGTGCCCGTCTGTGCT 62.969 66.667 0.00 0.00 0.00 4.40
272 273 3.044305 GTGTGCCCGTCTGTGCTC 61.044 66.667 0.00 0.00 0.00 4.26
273 274 4.314440 TGTGCCCGTCTGTGCTCC 62.314 66.667 0.00 0.00 0.00 4.70
279 280 4.111016 CGTCTGTGCTCCCGCGTA 62.111 66.667 4.92 0.00 39.65 4.42
280 281 2.506438 GTCTGTGCTCCCGCGTAC 60.506 66.667 4.92 0.00 39.65 3.67
281 282 4.111016 TCTGTGCTCCCGCGTACG 62.111 66.667 11.84 11.84 39.65 3.67
282 283 4.415332 CTGTGCTCCCGCGTACGT 62.415 66.667 17.90 0.00 39.65 3.57
283 284 3.042842 CTGTGCTCCCGCGTACGTA 62.043 63.158 17.90 0.00 39.65 3.57
284 285 2.277756 GTGCTCCCGCGTACGTAG 60.278 66.667 17.90 11.26 39.65 3.51
285 286 4.183686 TGCTCCCGCGTACGTAGC 62.184 66.667 17.90 19.14 43.15 3.58
286 287 3.885521 GCTCCCGCGTACGTAGCT 61.886 66.667 17.90 0.00 40.98 3.32
287 288 2.796651 CTCCCGCGTACGTAGCTT 59.203 61.111 17.90 0.00 37.70 3.74
288 289 1.585521 CTCCCGCGTACGTAGCTTG 60.586 63.158 17.90 0.37 37.70 4.01
289 290 1.985447 CTCCCGCGTACGTAGCTTGA 61.985 60.000 17.90 4.74 37.70 3.02
290 291 1.065273 CCCGCGTACGTAGCTTGAT 59.935 57.895 17.90 0.00 37.70 2.57
291 292 0.526954 CCCGCGTACGTAGCTTGATT 60.527 55.000 17.90 0.00 37.70 2.57
292 293 1.274596 CCGCGTACGTAGCTTGATTT 58.725 50.000 17.90 0.00 37.70 2.17
293 294 1.006391 CCGCGTACGTAGCTTGATTTG 60.006 52.381 17.90 0.00 37.70 2.32
294 295 1.915350 CGCGTACGTAGCTTGATTTGA 59.085 47.619 17.90 0.00 33.53 2.69
295 296 2.534349 CGCGTACGTAGCTTGATTTGAT 59.466 45.455 17.90 0.00 33.53 2.57
296 297 3.000078 CGCGTACGTAGCTTGATTTGATT 60.000 43.478 17.90 0.00 33.53 2.57
297 298 4.263800 GCGTACGTAGCTTGATTTGATTG 58.736 43.478 17.90 0.00 0.00 2.67
298 299 4.032445 GCGTACGTAGCTTGATTTGATTGA 59.968 41.667 17.90 0.00 0.00 2.57
299 300 5.445407 GCGTACGTAGCTTGATTTGATTGAA 60.445 40.000 17.90 0.00 0.00 2.69
300 301 6.530567 CGTACGTAGCTTGATTTGATTGAAA 58.469 36.000 7.22 0.00 0.00 2.69
301 302 6.461698 CGTACGTAGCTTGATTTGATTGAAAC 59.538 38.462 7.22 0.00 0.00 2.78
302 303 6.312399 ACGTAGCTTGATTTGATTGAAACA 57.688 33.333 0.00 0.00 0.00 2.83
303 304 6.734137 ACGTAGCTTGATTTGATTGAAACAA 58.266 32.000 0.00 0.00 0.00 2.83
304 305 7.199766 ACGTAGCTTGATTTGATTGAAACAAA 58.800 30.769 3.11 3.11 40.62 2.83
305 306 7.704472 ACGTAGCTTGATTTGATTGAAACAAAA 59.296 29.630 4.74 0.00 39.95 2.44
306 307 8.702438 CGTAGCTTGATTTGATTGAAACAAAAT 58.298 29.630 4.74 0.00 39.95 1.82
310 311 9.815936 GCTTGATTTGATTGAAACAAAATAAGG 57.184 29.630 19.05 7.23 39.95 2.69
311 312 9.815936 CTTGATTTGATTGAAACAAAATAAGGC 57.184 29.630 4.74 0.00 39.95 4.35
312 313 8.321650 TGATTTGATTGAAACAAAATAAGGCC 57.678 30.769 4.74 0.00 39.95 5.19
313 314 7.390162 TGATTTGATTGAAACAAAATAAGGCCC 59.610 33.333 4.74 0.00 39.95 5.80
314 315 5.815233 TGATTGAAACAAAATAAGGCCCA 57.185 34.783 0.00 0.00 0.00 5.36
315 316 5.792741 TGATTGAAACAAAATAAGGCCCAG 58.207 37.500 0.00 0.00 0.00 4.45
316 317 4.615588 TTGAAACAAAATAAGGCCCAGG 57.384 40.909 0.00 0.00 0.00 4.45
317 318 2.301583 TGAAACAAAATAAGGCCCAGGC 59.698 45.455 0.00 0.00 41.06 4.85
329 330 3.653078 CCAGGCCCACCCCGTTAA 61.653 66.667 0.00 0.00 36.11 2.01
330 331 2.437002 CAGGCCCACCCCGTTAAA 59.563 61.111 0.00 0.00 36.11 1.52
331 332 1.228613 CAGGCCCACCCCGTTAAAA 60.229 57.895 0.00 0.00 36.11 1.52
332 333 0.613572 CAGGCCCACCCCGTTAAAAT 60.614 55.000 0.00 0.00 36.11 1.82
333 334 0.323999 AGGCCCACCCCGTTAAAATC 60.324 55.000 0.00 0.00 36.11 2.17
334 335 0.612453 GGCCCACCCCGTTAAAATCA 60.612 55.000 0.00 0.00 0.00 2.57
335 336 0.815095 GCCCACCCCGTTAAAATCAG 59.185 55.000 0.00 0.00 0.00 2.90
336 337 1.470051 CCCACCCCGTTAAAATCAGG 58.530 55.000 0.00 0.00 0.00 3.86
337 338 1.470051 CCACCCCGTTAAAATCAGGG 58.530 55.000 0.00 0.00 43.88 4.45
359 360 6.713731 GGGGGTGATTATATTAGGAAGGAA 57.286 41.667 0.00 0.00 0.00 3.36
360 361 7.098845 GGGGGTGATTATATTAGGAAGGAAA 57.901 40.000 0.00 0.00 0.00 3.13
361 362 7.532199 GGGGGTGATTATATTAGGAAGGAAAA 58.468 38.462 0.00 0.00 0.00 2.29
362 363 8.008332 GGGGGTGATTATATTAGGAAGGAAAAA 58.992 37.037 0.00 0.00 0.00 1.94
379 380 0.756294 AAAAGGGGGAAAAACAGCCG 59.244 50.000 0.00 0.00 0.00 5.52
380 381 0.397957 AAAGGGGGAAAAACAGCCGT 60.398 50.000 0.00 0.00 0.00 5.68
381 382 0.479378 AAGGGGGAAAAACAGCCGTA 59.521 50.000 0.00 0.00 0.00 4.02
382 383 0.037734 AGGGGGAAAAACAGCCGTAG 59.962 55.000 0.00 0.00 0.00 3.51
396 397 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
397 398 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
398 399 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
399 400 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
400 401 1.450312 GGATGAAGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
401 402 1.596934 GATGAAGTGGGAGCACGGA 59.403 57.895 0.00 0.00 0.00 4.69
402 403 0.179000 GATGAAGTGGGAGCACGGAT 59.821 55.000 0.00 0.00 0.00 4.18
403 404 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
404 405 1.450312 GAAGTGGGAGCACGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
405 406 2.876368 GAAGTGGGAGCACGGATGGG 62.876 65.000 0.00 0.00 0.00 4.00
406 407 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
407 408 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
408 409 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
409 410 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
410 411 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
411 412 1.748403 GAGCACGGATGGGAGCATA 59.252 57.895 0.00 0.00 0.00 3.14
412 413 0.320247 GAGCACGGATGGGAGCATAG 60.320 60.000 0.00 0.00 0.00 2.23
413 414 1.302033 GCACGGATGGGAGCATAGG 60.302 63.158 0.00 0.00 0.00 2.57
414 415 1.372683 CACGGATGGGAGCATAGGG 59.627 63.158 0.00 0.00 0.00 3.53
415 416 1.121407 CACGGATGGGAGCATAGGGA 61.121 60.000 0.00 0.00 0.00 4.20
416 417 0.833834 ACGGATGGGAGCATAGGGAG 60.834 60.000 0.00 0.00 0.00 4.30
417 418 1.548357 CGGATGGGAGCATAGGGAGG 61.548 65.000 0.00 0.00 0.00 4.30
418 419 1.682257 GATGGGAGCATAGGGAGGC 59.318 63.158 0.00 0.00 0.00 4.70
419 420 1.073474 ATGGGAGCATAGGGAGGCA 60.073 57.895 0.00 0.00 33.81 4.75
420 421 1.132554 ATGGGAGCATAGGGAGGCAG 61.133 60.000 0.00 0.00 33.81 4.85
421 422 2.429494 GGAGCATAGGGAGGCAGC 59.571 66.667 0.00 0.00 33.81 5.25
422 423 2.446848 GGAGCATAGGGAGGCAGCA 61.447 63.158 0.00 0.00 33.81 4.41
423 424 1.071128 GAGCATAGGGAGGCAGCAG 59.929 63.158 0.00 0.00 33.81 4.24
424 425 2.112718 GCATAGGGAGGCAGCAGG 59.887 66.667 0.00 0.00 30.94 4.85
425 426 2.112718 CATAGGGAGGCAGCAGGC 59.887 66.667 0.00 0.00 43.74 4.85
435 436 3.207669 CAGCAGGCAAGCCGGATC 61.208 66.667 15.46 0.00 41.95 3.36
436 437 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
443 444 1.375396 CAAGCCGGATCCGTGTCAA 60.375 57.895 31.22 0.00 37.81 3.18
445 446 1.541310 AAGCCGGATCCGTGTCAAGA 61.541 55.000 31.22 0.00 37.81 3.02
514 515 8.799367 TGGCATGAATCATCTTAATTAGGAATG 58.201 33.333 0.93 1.62 0.00 2.67
515 516 7.758528 GGCATGAATCATCTTAATTAGGAATGC 59.241 37.037 15.85 15.85 34.81 3.56
516 517 8.301720 GCATGAATCATCTTAATTAGGAATGCA 58.698 33.333 17.84 8.02 35.45 3.96
522 523 9.750783 ATCATCTTAATTAGGAATGCAATAGCT 57.249 29.630 0.93 0.00 42.74 3.32
546 547 6.811634 ATTTTTAAATGAGATCCATGGGCA 57.188 33.333 13.02 5.95 35.24 5.36
562 570 4.987408 TGGGCAACTCATGACATATTTG 57.013 40.909 0.00 0.00 39.66 2.32
595 603 7.949690 AATACAGTTGTATTCCTTTTACCCC 57.050 36.000 10.86 0.00 45.22 4.95
657 673 8.150296 CCAATTCTGGTGTTTCCTATTTTTCTT 58.850 33.333 0.00 0.00 38.00 2.52
683 699 4.162698 ACTTACCAAATATGAGTGCGGGTA 59.837 41.667 0.00 0.00 0.00 3.69
708 806 6.025539 ACCTCATAGATGGCATATTACCTCA 58.974 40.000 0.00 0.00 0.00 3.86
741 839 5.433051 AGACCCTTGGATGAGAAATAATGGA 59.567 40.000 0.00 0.00 0.00 3.41
742 840 6.103797 AGACCCTTGGATGAGAAATAATGGAT 59.896 38.462 0.00 0.00 0.00 3.41
762 860 7.136822 TGGATAGTTACCAAATATGAGTGCT 57.863 36.000 0.00 0.00 34.25 4.40
769 867 3.244875 ACCAAATATGAGTGCTGGTGACA 60.245 43.478 0.00 0.00 38.95 3.58
783 881 4.629092 CTGGTGACATCATAGATGACCTG 58.371 47.826 13.46 10.82 40.03 4.00
787 885 6.183360 TGGTGACATCATAGATGACCTGTTAG 60.183 42.308 13.46 0.00 40.03 2.34
788 886 5.694006 GTGACATCATAGATGACCTGTTAGC 59.306 44.000 13.46 0.00 40.03 3.09
791 889 5.600069 ACATCATAGATGACCTGTTAGCTCA 59.400 40.000 13.46 0.00 40.03 4.26
796 894 5.021033 AGATGACCTGTTAGCTCATTCAG 57.979 43.478 0.00 0.00 0.00 3.02
797 895 4.469227 AGATGACCTGTTAGCTCATTCAGT 59.531 41.667 0.00 0.00 0.00 3.41
818 916 3.112263 TCCAGACCCTTGGATCGTAAAT 58.888 45.455 0.00 0.00 42.24 1.40
819 917 4.291792 TCCAGACCCTTGGATCGTAAATA 58.708 43.478 0.00 0.00 42.24 1.40
820 918 4.344102 TCCAGACCCTTGGATCGTAAATAG 59.656 45.833 0.00 0.00 42.24 1.73
955 1113 2.267006 CACAGAGGGCGCACTGAT 59.733 61.111 29.74 1.09 37.54 2.90
968 1134 1.134280 GCACTGATCCAGCACCATACT 60.134 52.381 0.00 0.00 34.37 2.12
969 1135 2.103094 GCACTGATCCAGCACCATACTA 59.897 50.000 0.00 0.00 34.37 1.82
970 1136 3.722147 CACTGATCCAGCACCATACTAC 58.278 50.000 0.00 0.00 34.37 2.73
971 1137 2.362397 ACTGATCCAGCACCATACTACG 59.638 50.000 0.00 0.00 34.37 3.51
972 1138 2.362397 CTGATCCAGCACCATACTACGT 59.638 50.000 0.00 0.00 0.00 3.57
973 1139 2.100749 TGATCCAGCACCATACTACGTG 59.899 50.000 0.00 0.00 0.00 4.49
974 1140 1.842052 TCCAGCACCATACTACGTGA 58.158 50.000 0.00 0.00 31.36 4.35
975 1141 1.475280 TCCAGCACCATACTACGTGAC 59.525 52.381 0.00 0.00 31.36 3.67
976 1142 1.470979 CCAGCACCATACTACGTGACC 60.471 57.143 0.00 0.00 31.36 4.02
977 1143 0.822164 AGCACCATACTACGTGACCC 59.178 55.000 0.00 0.00 31.36 4.46
985 1151 2.524640 TACGTGACCCACCCAGCA 60.525 61.111 0.00 0.00 0.00 4.41
1012 1178 1.077501 CAGGCCATGGATTCACCGT 60.078 57.895 18.40 0.00 42.61 4.83
1017 1183 0.964860 CCATGGATTCACCGTTGCCA 60.965 55.000 5.56 0.00 42.61 4.92
1025 1206 2.911509 ACCGTTGCCATTGCTGCA 60.912 55.556 0.00 0.00 38.71 4.41
1073 1257 0.681733 CTAGCCGGCCTGTACATGAT 59.318 55.000 26.15 2.07 0.00 2.45
1149 1339 1.378250 GCTCCACCAGCTGCTCAAT 60.378 57.895 8.66 0.00 45.83 2.57
1290 1486 1.674817 CGGACCAACTTCGCCAACTAT 60.675 52.381 0.00 0.00 0.00 2.12
1512 5346 0.620556 GGGAGAGGTTGAGCATGGAA 59.379 55.000 0.00 0.00 0.00 3.53
1800 5642 3.523157 TGGGCAGAGATGGACAAGAATTA 59.477 43.478 0.00 0.00 0.00 1.40
2126 6001 2.243957 CGGCGTGCAAGAGTTCACA 61.244 57.895 2.99 0.00 33.03 3.58
2360 6305 1.620739 GGGCATGCTGTGAGGAGAGA 61.621 60.000 18.92 0.00 0.00 3.10
2391 6336 1.065273 CTACCTGCCGTACGCGATT 59.935 57.895 15.93 0.00 42.08 3.34
2439 6384 3.706373 GCCGAGGAGTTCAGGCCA 61.706 66.667 5.01 0.00 38.63 5.36
2582 6845 8.999431 AGAATTCACGTGTATGTATTTTTGTCT 58.001 29.630 16.51 5.05 0.00 3.41
2721 9152 1.193462 TTCCACGGTGGGGTATCGTT 61.193 55.000 26.07 0.00 45.58 3.85
2856 9288 5.036737 CACATGTTCCTCTGTTTTGTTGTC 58.963 41.667 0.00 0.00 0.00 3.18
2862 9294 4.843728 TCCTCTGTTTTGTTGTCTTGAGT 58.156 39.130 0.00 0.00 0.00 3.41
2902 9334 1.498865 AAAGACGAGTGTTGCTGCGG 61.499 55.000 0.00 0.00 0.00 5.69
3028 9461 5.314923 ACATGTGTTTTGGCATCTGATAC 57.685 39.130 0.00 0.00 0.00 2.24
3034 9467 4.571984 TGTTTTGGCATCTGATACTCATCG 59.428 41.667 0.00 0.00 33.51 3.84
3048 9481 8.234136 TGATACTCATCGGATAGTTTTGTACT 57.766 34.615 0.00 0.00 36.04 2.73
3098 9531 5.821470 AGCATGTTCACTATTGATGGAGAAG 59.179 40.000 0.00 0.00 0.00 2.85
3164 9621 9.219603 TGTTATATGGCATAAGAAGAATAGCAC 57.780 33.333 11.86 0.00 0.00 4.40
3165 9622 8.669243 GTTATATGGCATAAGAAGAATAGCACC 58.331 37.037 11.86 0.00 0.00 5.01
3202 9659 4.499183 CGAAGGACAGAAAGCAAGATAGT 58.501 43.478 0.00 0.00 0.00 2.12
3209 9666 4.005650 CAGAAAGCAAGATAGTGAGGCAA 58.994 43.478 0.00 0.00 0.00 4.52
3210 9667 4.639310 CAGAAAGCAAGATAGTGAGGCAAT 59.361 41.667 0.00 0.00 0.00 3.56
3211 9668 5.125097 CAGAAAGCAAGATAGTGAGGCAATT 59.875 40.000 0.00 0.00 0.00 2.32
3225 9682 3.228453 AGGCAATTCATAAGATGGGCAG 58.772 45.455 0.00 0.00 0.00 4.85
3305 9785 9.912634 ATTTTGACAATAAAATGGTGAGTGTAG 57.087 29.630 0.00 0.00 38.46 2.74
3306 9786 6.494893 TGACAATAAAATGGTGAGTGTAGC 57.505 37.500 0.00 0.00 0.00 3.58
3308 9788 6.658816 TGACAATAAAATGGTGAGTGTAGCAT 59.341 34.615 0.00 0.00 40.24 3.79
3311 9791 8.677300 ACAATAAAATGGTGAGTGTAGCATAAG 58.323 33.333 0.00 0.00 37.77 1.73
3312 9792 5.567138 AAAATGGTGAGTGTAGCATAAGC 57.433 39.130 0.00 0.00 37.77 3.09
3313 9793 3.912496 ATGGTGAGTGTAGCATAAGCA 57.088 42.857 0.00 0.00 45.49 3.91
3314 9794 3.251479 TGGTGAGTGTAGCATAAGCAG 57.749 47.619 0.00 0.00 45.49 4.24
3315 9795 2.567169 TGGTGAGTGTAGCATAAGCAGT 59.433 45.455 0.00 0.00 45.49 4.40
3316 9796 3.767131 TGGTGAGTGTAGCATAAGCAGTA 59.233 43.478 0.00 0.00 45.49 2.74
3317 9797 4.113354 GGTGAGTGTAGCATAAGCAGTAC 58.887 47.826 0.00 0.00 45.49 2.73
3318 9798 4.381612 GGTGAGTGTAGCATAAGCAGTACA 60.382 45.833 0.00 0.00 45.49 2.90
3319 9799 4.563184 GTGAGTGTAGCATAAGCAGTACAC 59.437 45.833 12.18 12.18 45.48 2.90
3320 9800 4.219725 TGAGTGTAGCATAAGCAGTACACA 59.780 41.667 18.75 6.09 46.56 3.72
3321 9801 5.147330 AGTGTAGCATAAGCAGTACACAA 57.853 39.130 18.75 0.00 46.56 3.33
3322 9802 5.734720 AGTGTAGCATAAGCAGTACACAAT 58.265 37.500 18.75 3.22 46.56 2.71
3323 9803 6.873997 AGTGTAGCATAAGCAGTACACAATA 58.126 36.000 18.75 0.00 46.56 1.90
3324 9804 6.757010 AGTGTAGCATAAGCAGTACACAATAC 59.243 38.462 18.75 0.96 46.56 1.89
3325 9805 6.018994 GTGTAGCATAAGCAGTACACAATACC 60.019 42.308 14.19 0.00 44.95 2.73
3326 9806 4.119862 AGCATAAGCAGTACACAATACCG 58.880 43.478 0.00 0.00 45.49 4.02
3327 9807 3.247648 GCATAAGCAGTACACAATACCGG 59.752 47.826 0.00 0.00 41.58 5.28
3328 9808 4.439057 CATAAGCAGTACACAATACCGGT 58.561 43.478 13.98 13.98 0.00 5.28
3329 9809 2.380084 AGCAGTACACAATACCGGTG 57.620 50.000 19.93 2.45 41.95 4.94
3330 9810 1.897133 AGCAGTACACAATACCGGTGA 59.103 47.619 19.93 1.17 39.53 4.02
3331 9811 2.300723 AGCAGTACACAATACCGGTGAA 59.699 45.455 19.93 0.00 39.53 3.18
3332 9812 3.055385 AGCAGTACACAATACCGGTGAAT 60.055 43.478 19.93 0.00 39.53 2.57
3333 9813 4.160814 AGCAGTACACAATACCGGTGAATA 59.839 41.667 19.93 0.00 39.53 1.75
3334 9814 4.871557 GCAGTACACAATACCGGTGAATAA 59.128 41.667 19.93 0.00 39.53 1.40
3335 9815 5.526111 GCAGTACACAATACCGGTGAATAAT 59.474 40.000 19.93 0.00 39.53 1.28
3336 9816 6.037830 GCAGTACACAATACCGGTGAATAATT 59.962 38.462 19.93 5.39 39.53 1.40
3337 9817 7.627340 CAGTACACAATACCGGTGAATAATTC 58.373 38.462 19.93 2.37 39.53 2.17
3338 9818 7.494625 CAGTACACAATACCGGTGAATAATTCT 59.505 37.037 19.93 4.82 39.53 2.40
3339 9819 6.677781 ACACAATACCGGTGAATAATTCTG 57.322 37.500 19.93 8.97 39.53 3.02
3340 9820 6.411376 ACACAATACCGGTGAATAATTCTGA 58.589 36.000 19.93 0.00 39.53 3.27
3341 9821 6.882140 ACACAATACCGGTGAATAATTCTGAA 59.118 34.615 19.93 0.00 39.53 3.02
3342 9822 7.065803 ACACAATACCGGTGAATAATTCTGAAG 59.934 37.037 19.93 0.00 39.53 3.02
3343 9823 6.038271 ACAATACCGGTGAATAATTCTGAAGC 59.962 38.462 19.93 0.00 0.00 3.86
3344 9824 3.950397 ACCGGTGAATAATTCTGAAGCA 58.050 40.909 6.12 0.00 0.00 3.91
3345 9825 4.331968 ACCGGTGAATAATTCTGAAGCAA 58.668 39.130 6.12 0.00 0.00 3.91
3346 9826 4.949856 ACCGGTGAATAATTCTGAAGCAAT 59.050 37.500 6.12 0.00 0.00 3.56
3347 9827 6.119536 ACCGGTGAATAATTCTGAAGCAATA 58.880 36.000 6.12 0.00 0.00 1.90
3348 9828 6.601613 ACCGGTGAATAATTCTGAAGCAATAA 59.398 34.615 6.12 0.00 0.00 1.40
3349 9829 7.285401 ACCGGTGAATAATTCTGAAGCAATAAT 59.715 33.333 6.12 0.00 0.00 1.28
3350 9830 8.783093 CCGGTGAATAATTCTGAAGCAATAATA 58.217 33.333 0.00 0.00 0.00 0.98
3438 9919 0.391597 TTCTCGGAGAAAACACGCCT 59.608 50.000 17.70 0.00 34.09 5.52
3469 9950 1.963338 GCTCCCGCAGATACCATGC 60.963 63.158 0.00 0.00 40.35 4.06
3485 9966 5.132897 ACCATGCAACGTATGTTTTTCAT 57.867 34.783 0.00 0.00 35.72 2.57
3493 9974 6.087555 GCAACGTATGTTTTTCATTCGAATGT 59.912 34.615 31.49 16.77 45.56 2.71
3505 9986 2.470983 TCGAATGTGCAGTGGATTCA 57.529 45.000 0.00 0.00 0.00 2.57
3569 10050 5.940470 AGTGTTTTTCAGAGAACTCACACTT 59.060 36.000 13.65 3.91 40.50 3.16
3653 10134 4.190772 TCTTCATCATGTTGCAGCGATAA 58.809 39.130 0.00 0.00 0.00 1.75
3678 10159 3.016736 CAGTGGGAAAACACAAGACACT 58.983 45.455 0.00 0.00 43.72 3.55
3681 10162 2.291282 TGGGAAAACACAAGACACTGGT 60.291 45.455 0.00 0.00 0.00 4.00
3698 10179 1.364626 GGTGCGCTGATCTGGTTCTG 61.365 60.000 9.73 0.00 0.00 3.02
3708 10189 3.640498 TGATCTGGTTCTGGCTCTCATAG 59.360 47.826 0.00 0.00 0.00 2.23
3761 10242 7.279536 TGCTGATCTGTTTCTGATTCAACTATC 59.720 37.037 1.27 0.00 0.00 2.08
3766 10247 9.848710 ATCTGTTTCTGATTCAACTATCATGAT 57.151 29.630 13.81 13.81 34.24 2.45
3767 10248 9.676861 TCTGTTTCTGATTCAACTATCATGATT 57.323 29.630 14.65 0.00 34.24 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.793252 ACTAATTTTATTTGATGTGACTGCATC 57.207 29.630 0.00 0.00 43.97 3.91
8 9 9.577110 CACTAATTTTATTTGATGTGACTGCAT 57.423 29.630 0.00 0.00 0.00 3.96
9 10 8.028354 CCACTAATTTTATTTGATGTGACTGCA 58.972 33.333 0.00 0.00 0.00 4.41
10 11 8.243426 TCCACTAATTTTATTTGATGTGACTGC 58.757 33.333 0.00 0.00 0.00 4.40
11 12 9.559958 GTCCACTAATTTTATTTGATGTGACTG 57.440 33.333 0.00 0.00 0.00 3.51
12 13 9.295825 TGTCCACTAATTTTATTTGATGTGACT 57.704 29.630 0.00 0.00 0.00 3.41
13 14 9.906660 TTGTCCACTAATTTTATTTGATGTGAC 57.093 29.630 0.00 0.00 0.00 3.67
14 15 9.906660 GTTGTCCACTAATTTTATTTGATGTGA 57.093 29.630 0.00 0.00 0.00 3.58
15 16 9.912634 AGTTGTCCACTAATTTTATTTGATGTG 57.087 29.630 0.00 0.00 31.97 3.21
65 66 9.419297 GGTTAAGTTCTGAGTTTGAAACTTTTT 57.581 29.630 12.37 4.08 43.03 1.94
66 67 8.581578 TGGTTAAGTTCTGAGTTTGAAACTTTT 58.418 29.630 12.37 3.77 43.03 2.27
67 68 8.117813 TGGTTAAGTTCTGAGTTTGAAACTTT 57.882 30.769 12.37 4.03 43.03 2.66
68 69 7.696992 TGGTTAAGTTCTGAGTTTGAAACTT 57.303 32.000 12.37 4.91 43.03 2.66
69 70 7.696992 TTGGTTAAGTTCTGAGTTTGAAACT 57.303 32.000 10.82 10.82 46.38 2.66
70 71 8.807581 CATTTGGTTAAGTTCTGAGTTTGAAAC 58.192 33.333 0.00 0.00 0.00 2.78
71 72 7.978975 CCATTTGGTTAAGTTCTGAGTTTGAAA 59.021 33.333 0.00 0.00 0.00 2.69
72 73 7.340743 TCCATTTGGTTAAGTTCTGAGTTTGAA 59.659 33.333 0.00 0.00 36.34 2.69
73 74 6.831353 TCCATTTGGTTAAGTTCTGAGTTTGA 59.169 34.615 0.00 0.00 36.34 2.69
74 75 6.918022 GTCCATTTGGTTAAGTTCTGAGTTTG 59.082 38.462 0.00 0.00 36.34 2.93
75 76 6.605594 TGTCCATTTGGTTAAGTTCTGAGTTT 59.394 34.615 0.00 0.00 36.34 2.66
76 77 6.126409 TGTCCATTTGGTTAAGTTCTGAGTT 58.874 36.000 0.00 0.00 36.34 3.01
77 78 5.690865 TGTCCATTTGGTTAAGTTCTGAGT 58.309 37.500 0.00 0.00 36.34 3.41
78 79 6.633500 TTGTCCATTTGGTTAAGTTCTGAG 57.367 37.500 0.00 0.00 36.34 3.35
79 80 6.605594 ACTTTGTCCATTTGGTTAAGTTCTGA 59.394 34.615 0.00 0.00 36.34 3.27
80 81 6.805713 ACTTTGTCCATTTGGTTAAGTTCTG 58.194 36.000 0.00 0.00 36.34 3.02
81 82 7.418337 AACTTTGTCCATTTGGTTAAGTTCT 57.582 32.000 14.67 2.64 36.96 3.01
82 83 7.465379 GCAAACTTTGTCCATTTGGTTAAGTTC 60.465 37.037 17.90 9.54 38.65 3.01
83 84 6.315144 GCAAACTTTGTCCATTTGGTTAAGTT 59.685 34.615 14.67 14.67 39.85 2.66
84 85 5.815222 GCAAACTTTGTCCATTTGGTTAAGT 59.185 36.000 3.48 2.96 34.55 2.24
85 86 6.048509 AGCAAACTTTGTCCATTTGGTTAAG 58.951 36.000 3.48 2.40 40.19 1.85
86 87 5.983540 AGCAAACTTTGTCCATTTGGTTAA 58.016 33.333 3.48 0.00 40.19 2.01
87 88 5.606348 AGCAAACTTTGTCCATTTGGTTA 57.394 34.783 3.48 0.00 40.19 2.85
88 89 4.486125 AGCAAACTTTGTCCATTTGGTT 57.514 36.364 3.48 0.00 40.19 3.67
89 90 4.202212 GGTAGCAAACTTTGTCCATTTGGT 60.202 41.667 3.48 6.00 44.03 3.67
90 91 4.306600 GGTAGCAAACTTTGTCCATTTGG 58.693 43.478 3.48 0.00 34.55 3.28
91 92 4.202202 TGGGTAGCAAACTTTGTCCATTTG 60.202 41.667 3.48 0.00 36.58 2.32
92 93 3.964031 TGGGTAGCAAACTTTGTCCATTT 59.036 39.130 3.48 0.00 0.00 2.32
93 94 3.571590 TGGGTAGCAAACTTTGTCCATT 58.428 40.909 3.48 0.00 0.00 3.16
94 95 3.157087 CTGGGTAGCAAACTTTGTCCAT 58.843 45.455 3.48 0.00 0.00 3.41
95 96 2.582052 CTGGGTAGCAAACTTTGTCCA 58.418 47.619 3.48 5.86 0.00 4.02
138 139 8.713271 GTCAACTACACCAACAAATTTCAAAAA 58.287 29.630 0.00 0.00 0.00 1.94
153 154 8.615878 TTTGCATATATATGGTCAACTACACC 57.384 34.615 21.50 3.89 34.32 4.16
180 181 9.947433 CCATGATATATTAAATGGGTGCAATTT 57.053 29.630 12.18 0.00 36.68 1.82
181 182 9.324008 TCCATGATATATTAAATGGGTGCAATT 57.676 29.630 16.83 0.00 40.07 2.32
182 183 8.898303 TCCATGATATATTAAATGGGTGCAAT 57.102 30.769 16.83 0.00 40.07 3.56
202 203 5.355071 TCGGAACAGATTCATTCTTTCCATG 59.645 40.000 12.64 0.00 39.31 3.66
203 204 5.500234 TCGGAACAGATTCATTCTTTCCAT 58.500 37.500 12.64 0.00 39.31 3.41
209 210 6.881065 TCAGAAAATCGGAACAGATTCATTCT 59.119 34.615 7.98 7.98 39.69 2.40
214 215 6.903419 AGTTTCAGAAAATCGGAACAGATTC 58.097 36.000 0.00 0.00 39.69 2.52
217 218 5.505654 GCAAGTTTCAGAAAATCGGAACAGA 60.506 40.000 0.00 0.00 30.63 3.41
218 219 4.676924 GCAAGTTTCAGAAAATCGGAACAG 59.323 41.667 0.00 0.00 30.63 3.16
224 225 2.982470 GCAGGCAAGTTTCAGAAAATCG 59.018 45.455 0.00 0.00 0.00 3.34
225 226 2.982470 CGCAGGCAAGTTTCAGAAAATC 59.018 45.455 0.00 0.00 0.00 2.17
254 255 4.969196 AGCACAGACGGGCACACG 62.969 66.667 0.00 0.00 40.31 4.49
255 256 3.044305 GAGCACAGACGGGCACAC 61.044 66.667 0.00 0.00 0.00 3.82
256 257 4.314440 GGAGCACAGACGGGCACA 62.314 66.667 0.00 0.00 0.00 4.57
270 271 1.585521 CAAGCTACGTACGCGGGAG 60.586 63.158 16.72 8.84 43.45 4.30
271 272 1.378882 ATCAAGCTACGTACGCGGGA 61.379 55.000 16.72 5.18 43.45 5.14
272 273 0.526954 AATCAAGCTACGTACGCGGG 60.527 55.000 16.72 6.77 43.45 6.13
273 274 1.006391 CAAATCAAGCTACGTACGCGG 60.006 52.381 16.72 9.46 43.45 6.46
274 275 1.915350 TCAAATCAAGCTACGTACGCG 59.085 47.619 16.72 3.53 44.93 6.01
275 276 4.032445 TCAATCAAATCAAGCTACGTACGC 59.968 41.667 16.72 0.00 0.00 4.42
276 277 5.696260 TCAATCAAATCAAGCTACGTACG 57.304 39.130 15.01 15.01 0.00 3.67
277 278 7.295201 TGTTTCAATCAAATCAAGCTACGTAC 58.705 34.615 0.00 0.00 0.00 3.67
278 279 7.428282 TGTTTCAATCAAATCAAGCTACGTA 57.572 32.000 0.00 0.00 0.00 3.57
279 280 6.312399 TGTTTCAATCAAATCAAGCTACGT 57.688 33.333 0.00 0.00 0.00 3.57
280 281 7.621832 TTTGTTTCAATCAAATCAAGCTACG 57.378 32.000 0.00 0.00 31.17 3.51
284 285 9.815936 CCTTATTTTGTTTCAATCAAATCAAGC 57.184 29.630 0.00 0.00 35.25 4.01
285 286 9.815936 GCCTTATTTTGTTTCAATCAAATCAAG 57.184 29.630 0.00 2.60 35.25 3.02
286 287 8.782144 GGCCTTATTTTGTTTCAATCAAATCAA 58.218 29.630 0.00 0.00 35.25 2.57
287 288 7.390162 GGGCCTTATTTTGTTTCAATCAAATCA 59.610 33.333 0.84 0.00 35.25 2.57
288 289 7.390162 TGGGCCTTATTTTGTTTCAATCAAATC 59.610 33.333 4.53 0.00 35.25 2.17
289 290 7.230027 TGGGCCTTATTTTGTTTCAATCAAAT 58.770 30.769 4.53 0.00 35.25 2.32
290 291 6.595682 TGGGCCTTATTTTGTTTCAATCAAA 58.404 32.000 4.53 0.00 33.76 2.69
291 292 6.179906 TGGGCCTTATTTTGTTTCAATCAA 57.820 33.333 4.53 0.00 0.00 2.57
292 293 5.279910 CCTGGGCCTTATTTTGTTTCAATCA 60.280 40.000 4.53 0.00 0.00 2.57
293 294 5.178061 CCTGGGCCTTATTTTGTTTCAATC 58.822 41.667 4.53 0.00 0.00 2.67
294 295 4.565444 GCCTGGGCCTTATTTTGTTTCAAT 60.565 41.667 4.53 0.00 34.56 2.57
295 296 3.244387 GCCTGGGCCTTATTTTGTTTCAA 60.244 43.478 4.53 0.00 34.56 2.69
296 297 2.301583 GCCTGGGCCTTATTTTGTTTCA 59.698 45.455 4.53 0.00 34.56 2.69
297 298 2.972625 GCCTGGGCCTTATTTTGTTTC 58.027 47.619 4.53 0.00 34.56 2.78
312 313 2.716833 TTTTAACGGGGTGGGCCTGG 62.717 60.000 4.53 0.00 34.45 4.45
313 314 0.613572 ATTTTAACGGGGTGGGCCTG 60.614 55.000 4.53 0.00 34.45 4.85
314 315 0.323999 GATTTTAACGGGGTGGGCCT 60.324 55.000 4.53 0.00 34.45 5.19
315 316 0.612453 TGATTTTAACGGGGTGGGCC 60.612 55.000 0.00 0.00 0.00 5.80
316 317 0.815095 CTGATTTTAACGGGGTGGGC 59.185 55.000 0.00 0.00 0.00 5.36
317 318 1.470051 CCTGATTTTAACGGGGTGGG 58.530 55.000 0.00 0.00 0.00 4.61
318 319 1.470051 CCCTGATTTTAACGGGGTGG 58.530 55.000 0.00 0.00 45.91 4.61
336 337 6.713731 TTCCTTCCTAATATAATCACCCCC 57.286 41.667 0.00 0.00 0.00 5.40
359 360 1.140052 CGGCTGTTTTTCCCCCTTTTT 59.860 47.619 0.00 0.00 0.00 1.94
360 361 0.756294 CGGCTGTTTTTCCCCCTTTT 59.244 50.000 0.00 0.00 0.00 2.27
361 362 0.397957 ACGGCTGTTTTTCCCCCTTT 60.398 50.000 0.00 0.00 0.00 3.11
362 363 0.479378 TACGGCTGTTTTTCCCCCTT 59.521 50.000 1.99 0.00 0.00 3.95
363 364 0.037734 CTACGGCTGTTTTTCCCCCT 59.962 55.000 1.99 0.00 0.00 4.79
364 365 0.963856 CCTACGGCTGTTTTTCCCCC 60.964 60.000 1.99 0.00 0.00 5.40
365 366 0.037160 TCCTACGGCTGTTTTTCCCC 59.963 55.000 1.99 0.00 0.00 4.81
366 367 1.743394 CATCCTACGGCTGTTTTTCCC 59.257 52.381 1.99 0.00 0.00 3.97
367 368 2.706890 TCATCCTACGGCTGTTTTTCC 58.293 47.619 1.99 0.00 0.00 3.13
368 369 3.751698 ACTTCATCCTACGGCTGTTTTTC 59.248 43.478 1.99 0.00 0.00 2.29
369 370 3.502211 CACTTCATCCTACGGCTGTTTTT 59.498 43.478 1.99 0.00 0.00 1.94
370 371 3.074412 CACTTCATCCTACGGCTGTTTT 58.926 45.455 1.99 0.00 0.00 2.43
371 372 2.615493 CCACTTCATCCTACGGCTGTTT 60.615 50.000 1.99 0.00 0.00 2.83
372 373 1.066143 CCACTTCATCCTACGGCTGTT 60.066 52.381 1.99 0.00 0.00 3.16
373 374 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
374 375 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
375 376 0.325296 TCCCACTTCATCCTACGGCT 60.325 55.000 0.00 0.00 0.00 5.52
376 377 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.000 0.00 0.00 0.00 5.68
377 378 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
378 379 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
379 380 1.471676 CGTGCTCCCACTTCATCCTAC 60.472 57.143 0.00 0.00 39.86 3.18
380 381 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
381 382 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
382 383 1.450312 CCGTGCTCCCACTTCATCC 60.450 63.158 0.00 0.00 39.86 3.51
383 384 0.179000 ATCCGTGCTCCCACTTCATC 59.821 55.000 0.00 0.00 39.86 2.92
384 385 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
385 386 1.296392 CATCCGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 39.86 3.02
386 387 1.450312 CCATCCGTGCTCCCACTTC 60.450 63.158 0.00 0.00 39.86 3.01
387 388 2.671070 CCATCCGTGCTCCCACTT 59.329 61.111 0.00 0.00 39.86 3.16
388 389 3.402681 CCCATCCGTGCTCCCACT 61.403 66.667 0.00 0.00 39.86 4.00
389 390 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
390 391 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
391 392 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
392 393 1.758440 TATGCTCCCATCCGTGCTCC 61.758 60.000 0.00 0.00 32.85 4.70
393 394 0.320247 CTATGCTCCCATCCGTGCTC 60.320 60.000 0.00 0.00 32.85 4.26
394 395 1.750930 CTATGCTCCCATCCGTGCT 59.249 57.895 0.00 0.00 32.85 4.40
395 396 1.302033 CCTATGCTCCCATCCGTGC 60.302 63.158 0.00 0.00 32.85 5.34
396 397 1.121407 TCCCTATGCTCCCATCCGTG 61.121 60.000 0.00 0.00 32.85 4.94
397 398 0.833834 CTCCCTATGCTCCCATCCGT 60.834 60.000 0.00 0.00 32.85 4.69
398 399 1.548357 CCTCCCTATGCTCCCATCCG 61.548 65.000 0.00 0.00 32.85 4.18
399 400 1.846712 GCCTCCCTATGCTCCCATCC 61.847 65.000 0.00 0.00 32.85 3.51
400 401 1.130054 TGCCTCCCTATGCTCCCATC 61.130 60.000 0.00 0.00 32.85 3.51
401 402 1.073474 TGCCTCCCTATGCTCCCAT 60.073 57.895 0.00 0.00 35.44 4.00
402 403 1.767672 CTGCCTCCCTATGCTCCCA 60.768 63.158 0.00 0.00 0.00 4.37
403 404 3.155750 CTGCCTCCCTATGCTCCC 58.844 66.667 0.00 0.00 0.00 4.30
404 405 2.394565 CTGCTGCCTCCCTATGCTCC 62.395 65.000 0.00 0.00 0.00 4.70
405 406 1.071128 CTGCTGCCTCCCTATGCTC 59.929 63.158 0.00 0.00 0.00 4.26
406 407 2.450320 CCTGCTGCCTCCCTATGCT 61.450 63.158 0.00 0.00 0.00 3.79
407 408 2.112718 CCTGCTGCCTCCCTATGC 59.887 66.667 0.00 0.00 0.00 3.14
408 409 2.112718 GCCTGCTGCCTCCCTATG 59.887 66.667 0.00 0.00 0.00 2.23
409 410 1.992519 CTTGCCTGCTGCCTCCCTAT 61.993 60.000 0.00 0.00 40.16 2.57
410 411 2.610546 TTGCCTGCTGCCTCCCTA 60.611 61.111 0.00 0.00 40.16 3.53
411 412 4.044439 CTTGCCTGCTGCCTCCCT 62.044 66.667 0.00 0.00 40.16 4.20
418 419 3.207669 GATCCGGCTTGCCTGCTG 61.208 66.667 10.12 0.44 38.94 4.41
419 420 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
421 422 4.473520 ACGGATCCGGCTTGCCTG 62.474 66.667 35.87 7.52 44.69 4.85
422 423 4.473520 CACGGATCCGGCTTGCCT 62.474 66.667 35.87 12.31 44.69 4.75
423 424 4.778143 ACACGGATCCGGCTTGCC 62.778 66.667 35.87 0.75 44.69 4.52
424 425 3.195698 GACACGGATCCGGCTTGC 61.196 66.667 35.87 17.58 44.69 4.01
425 426 1.361668 CTTGACACGGATCCGGCTTG 61.362 60.000 35.87 26.80 44.69 4.01
426 427 1.079127 CTTGACACGGATCCGGCTT 60.079 57.895 35.87 20.43 44.69 4.35
427 428 1.330655 ATCTTGACACGGATCCGGCT 61.331 55.000 35.87 21.28 44.69 5.52
428 429 0.387929 TATCTTGACACGGATCCGGC 59.612 55.000 35.87 24.40 44.69 6.13
429 430 2.035961 ACATATCTTGACACGGATCCGG 59.964 50.000 35.87 26.10 44.69 5.14
430 431 3.052745 CACATATCTTGACACGGATCCG 58.947 50.000 32.20 32.20 46.03 4.18
431 432 4.322080 TCACATATCTTGACACGGATCC 57.678 45.455 0.00 0.00 0.00 3.36
432 433 5.777802 AGATCACATATCTTGACACGGATC 58.222 41.667 0.00 0.00 0.00 3.36
433 434 5.302823 TGAGATCACATATCTTGACACGGAT 59.697 40.000 0.00 0.00 0.00 4.18
434 435 4.644685 TGAGATCACATATCTTGACACGGA 59.355 41.667 0.00 0.00 0.00 4.69
435 436 4.936891 TGAGATCACATATCTTGACACGG 58.063 43.478 0.00 0.00 0.00 4.94
436 437 6.211515 TCATGAGATCACATATCTTGACACG 58.788 40.000 5.25 0.00 32.11 4.49
518 519 9.300681 CCCATGGATCTCATTTAAAAATAGCTA 57.699 33.333 15.22 0.00 32.92 3.32
519 520 7.256083 GCCCATGGATCTCATTTAAAAATAGCT 60.256 37.037 15.22 0.00 32.92 3.32
520 521 6.870439 GCCCATGGATCTCATTTAAAAATAGC 59.130 38.462 15.22 0.00 32.92 2.97
521 522 7.954835 TGCCCATGGATCTCATTTAAAAATAG 58.045 34.615 15.22 0.00 32.92 1.73
522 523 7.911130 TGCCCATGGATCTCATTTAAAAATA 57.089 32.000 15.22 0.00 32.92 1.40
523 524 6.811634 TGCCCATGGATCTCATTTAAAAAT 57.188 33.333 15.22 0.00 32.92 1.82
524 525 6.213195 AGTTGCCCATGGATCTCATTTAAAAA 59.787 34.615 15.22 0.00 32.92 1.94
525 526 5.721000 AGTTGCCCATGGATCTCATTTAAAA 59.279 36.000 15.22 0.00 32.92 1.52
526 527 5.271598 AGTTGCCCATGGATCTCATTTAAA 58.728 37.500 15.22 0.00 32.92 1.52
527 528 4.870636 AGTTGCCCATGGATCTCATTTAA 58.129 39.130 15.22 0.00 32.92 1.52
528 529 4.079844 TGAGTTGCCCATGGATCTCATTTA 60.080 41.667 15.22 0.00 32.92 1.40
542 543 4.989279 ACAAATATGTCATGAGTTGCCC 57.011 40.909 0.00 0.00 33.41 5.36
577 585 4.083565 TGCTGGGGTAAAAGGAATACAAC 58.916 43.478 0.00 0.00 0.00 3.32
582 590 4.017130 AGAGATTGCTGGGGTAAAAGGAAT 60.017 41.667 0.00 0.00 37.19 3.01
593 601 5.026121 TCCTACCATATAGAGATTGCTGGG 58.974 45.833 0.00 0.00 0.00 4.45
657 673 5.113383 CCGCACTCATATTTGGTAAGTGTA 58.887 41.667 0.00 0.00 39.56 2.90
683 699 6.501805 TGAGGTAATATGCCATCTATGAGGTT 59.498 38.462 0.00 0.00 0.00 3.50
696 712 6.150140 GGTCTGGATTGAATGAGGTAATATGC 59.850 42.308 0.00 0.00 0.00 3.14
698 714 6.564152 AGGGTCTGGATTGAATGAGGTAATAT 59.436 38.462 0.00 0.00 0.00 1.28
741 839 6.767902 CACCAGCACTCATATTTGGTAACTAT 59.232 38.462 0.00 0.00 40.02 2.12
742 840 6.070481 TCACCAGCACTCATATTTGGTAACTA 60.070 38.462 0.00 0.00 40.02 2.24
762 860 4.033009 ACAGGTCATCTATGATGTCACCA 58.967 43.478 15.87 0.00 39.30 4.17
783 881 3.526534 GGTCTGGACTGAATGAGCTAAC 58.473 50.000 0.00 0.00 0.00 2.34
787 885 0.908198 AGGGTCTGGACTGAATGAGC 59.092 55.000 0.67 0.00 0.00 4.26
788 886 2.355513 CCAAGGGTCTGGACTGAATGAG 60.356 54.545 0.67 0.00 38.96 2.90
791 889 2.044793 TCCAAGGGTCTGGACTGAAT 57.955 50.000 0.67 0.00 40.71 2.57
819 917 7.977853 CGTACTATTTGGTAACTGTCCATTACT 59.022 37.037 0.00 0.00 34.75 2.24
820 918 7.975616 TCGTACTATTTGGTAACTGTCCATTAC 59.024 37.037 0.00 0.00 34.75 1.89
841 939 0.243095 GAGGTCACCCACACTCGTAC 59.757 60.000 0.00 0.00 0.00 3.67
842 940 0.178984 TGAGGTCACCCACACTCGTA 60.179 55.000 0.00 0.00 32.76 3.43
843 941 0.832135 ATGAGGTCACCCACACTCGT 60.832 55.000 0.00 0.00 33.92 4.18
844 942 1.135139 CTATGAGGTCACCCACACTCG 59.865 57.143 0.00 0.00 33.92 4.18
955 1113 1.475280 GTCACGTAGTATGGTGCTGGA 59.525 52.381 0.00 0.00 41.61 3.86
968 1134 2.524640 TGCTGGGTGGGTCACGTA 60.525 61.111 0.00 0.00 34.83 3.57
969 1135 4.250305 GTGCTGGGTGGGTCACGT 62.250 66.667 0.00 0.00 34.83 4.49
973 1139 3.785122 AAACGGTGCTGGGTGGGTC 62.785 63.158 0.00 0.00 0.00 4.46
974 1140 3.785122 GAAACGGTGCTGGGTGGGT 62.785 63.158 0.00 0.00 0.00 4.51
975 1141 2.983592 GAAACGGTGCTGGGTGGG 60.984 66.667 0.00 0.00 0.00 4.61
976 1142 2.203280 TGAAACGGTGCTGGGTGG 60.203 61.111 0.00 0.00 0.00 4.61
977 1143 1.785041 CTGTGAAACGGTGCTGGGTG 61.785 60.000 0.00 0.00 42.39 4.61
985 1151 1.603455 CCATGGCCTGTGAAACGGT 60.603 57.895 3.32 0.00 43.33 4.83
1012 1178 2.628696 CGACCTGCAGCAATGGCAA 61.629 57.895 8.66 0.00 44.61 4.52
1045 1229 2.737830 GCCGGCTAGGATCAGGAC 59.262 66.667 22.15 0.00 45.00 3.85
1290 1486 2.668632 GTCATCGTCCCCTTGCCA 59.331 61.111 0.00 0.00 0.00 4.92
1512 5346 0.817654 TCGACCGCATGAACAGATCT 59.182 50.000 0.00 0.00 0.00 2.75
1566 5402 2.656069 GGACAGCGAGCCCAGGTTA 61.656 63.158 0.00 0.00 0.00 2.85
1708 5550 2.047274 CACCGACCGCTTCATGGT 60.047 61.111 0.00 0.00 44.10 3.55
1800 5642 7.658575 TGCAAGAGGAATTAAAGTTTACGTACT 59.341 33.333 0.00 0.00 0.00 2.73
2126 6001 3.303135 TCTTCGGTCAGGCACGCT 61.303 61.111 0.00 0.00 0.00 5.07
2346 6291 0.113190 TGTCCTCTCTCCTCACAGCA 59.887 55.000 0.00 0.00 0.00 4.41
2439 6384 2.041686 GTCGTCGAGCCACCTCTCT 61.042 63.158 0.00 0.00 35.90 3.10
2582 6845 2.500229 CCCGCCTAAGTTGAACAAGAA 58.500 47.619 0.00 0.00 0.00 2.52
2721 9152 2.827322 CCATTTTGAGGGTGAGCATTGA 59.173 45.455 0.00 0.00 0.00 2.57
2902 9334 4.568152 ATTATACTGCAAAATGGACGGC 57.432 40.909 0.00 0.00 0.00 5.68
3028 9461 7.957484 CACAAAAGTACAAAACTATCCGATGAG 59.043 37.037 0.00 0.00 37.50 2.90
3034 9467 6.149633 CAGGCACAAAAGTACAAAACTATCC 58.850 40.000 0.00 0.00 37.50 2.59
3038 9471 5.400066 AACAGGCACAAAAGTACAAAACT 57.600 34.783 0.00 0.00 41.49 2.66
3140 9575 7.549134 CGGTGCTATTCTTCTTATGCCATATAA 59.451 37.037 0.00 0.00 0.00 0.98
3143 9578 5.237815 CGGTGCTATTCTTCTTATGCCATA 58.762 41.667 0.00 0.00 0.00 2.74
3144 9579 4.067896 CGGTGCTATTCTTCTTATGCCAT 58.932 43.478 0.00 0.00 0.00 4.40
3145 9580 3.466836 CGGTGCTATTCTTCTTATGCCA 58.533 45.455 0.00 0.00 0.00 4.92
3146 9581 2.808543 CCGGTGCTATTCTTCTTATGCC 59.191 50.000 0.00 0.00 0.00 4.40
3148 9583 5.360591 AGAACCGGTGCTATTCTTCTTATG 58.639 41.667 15.55 0.00 28.03 1.90
3164 9621 2.287915 CCTTCGCATGATTTAGAACCGG 59.712 50.000 0.00 0.00 0.00 5.28
3165 9622 3.001330 GTCCTTCGCATGATTTAGAACCG 59.999 47.826 0.00 0.00 0.00 4.44
3202 9659 3.225104 GCCCATCTTATGAATTGCCTCA 58.775 45.455 0.00 0.00 0.00 3.86
3209 9666 7.293073 AGTATTTGACTGCCCATCTTATGAAT 58.707 34.615 0.00 0.00 36.87 2.57
3210 9667 6.662755 AGTATTTGACTGCCCATCTTATGAA 58.337 36.000 0.00 0.00 36.87 2.57
3211 9668 6.252599 AGTATTTGACTGCCCATCTTATGA 57.747 37.500 0.00 0.00 36.87 2.15
3259 9716 1.300620 GACGTGTGTGGCACAGCTA 60.301 57.895 22.75 7.85 45.43 3.32
3260 9717 1.744320 TAGACGTGTGTGGCACAGCT 61.744 55.000 22.75 14.95 45.43 4.24
3305 9785 3.247648 CCGGTATTGTGTACTGCTTATGC 59.752 47.826 0.00 0.00 40.20 3.14
3306 9786 4.270084 CACCGGTATTGTGTACTGCTTATG 59.730 45.833 6.87 0.00 0.00 1.90
3308 9788 3.510753 TCACCGGTATTGTGTACTGCTTA 59.489 43.478 6.87 0.00 35.25 3.09
3311 9791 2.373540 TCACCGGTATTGTGTACTGC 57.626 50.000 6.87 0.00 35.25 4.40
3312 9792 7.494625 AGAATTATTCACCGGTATTGTGTACTG 59.505 37.037 6.87 0.00 35.25 2.74
3313 9793 7.494625 CAGAATTATTCACCGGTATTGTGTACT 59.505 37.037 6.87 0.00 35.25 2.73
3314 9794 7.493320 TCAGAATTATTCACCGGTATTGTGTAC 59.507 37.037 18.46 5.71 35.25 2.90
3315 9795 7.557724 TCAGAATTATTCACCGGTATTGTGTA 58.442 34.615 18.46 7.64 35.25 2.90
3316 9796 6.411376 TCAGAATTATTCACCGGTATTGTGT 58.589 36.000 18.46 0.00 35.25 3.72
3317 9797 6.918892 TCAGAATTATTCACCGGTATTGTG 57.081 37.500 6.87 12.25 35.01 3.33
3318 9798 6.038271 GCTTCAGAATTATTCACCGGTATTGT 59.962 38.462 6.87 0.00 0.00 2.71
3319 9799 6.038161 TGCTTCAGAATTATTCACCGGTATTG 59.962 38.462 6.87 0.00 0.00 1.90
3320 9800 6.119536 TGCTTCAGAATTATTCACCGGTATT 58.880 36.000 6.87 2.19 0.00 1.89
3321 9801 5.680619 TGCTTCAGAATTATTCACCGGTAT 58.319 37.500 6.87 0.00 0.00 2.73
3322 9802 5.092554 TGCTTCAGAATTATTCACCGGTA 57.907 39.130 6.87 0.00 0.00 4.02
3323 9803 3.950397 TGCTTCAGAATTATTCACCGGT 58.050 40.909 0.00 0.00 0.00 5.28
3324 9804 4.963276 TTGCTTCAGAATTATTCACCGG 57.037 40.909 7.74 0.00 0.00 5.28
3360 9840 9.502091 TCAAGTTTTAGCACATCTTAGTGTTAT 57.498 29.630 0.00 0.00 41.52 1.89
3469 9950 7.428504 CACATTCGAATGAAAAACATACGTTG 58.571 34.615 37.75 19.89 39.67 4.10
3485 9966 2.483877 GTGAATCCACTGCACATTCGAA 59.516 45.455 0.00 0.00 40.10 3.71
3493 9974 2.359850 GCGGGTGAATCCACTGCA 60.360 61.111 0.00 0.00 42.77 4.41
3519 10000 8.029642 ACACAAAATAGACACAATACTGCTAC 57.970 34.615 0.00 0.00 0.00 3.58
3644 10125 0.447801 CCCACTGTTGTTATCGCTGC 59.552 55.000 0.00 0.00 0.00 5.25
3653 10134 3.192633 GTCTTGTGTTTTCCCACTGTTGT 59.807 43.478 0.00 0.00 36.30 3.32
3678 10159 1.375908 GAACCAGATCAGCGCACCA 60.376 57.895 11.47 0.00 0.00 4.17
3681 10162 1.078918 CCAGAACCAGATCAGCGCA 60.079 57.895 11.47 0.00 0.00 6.09
3698 10179 2.158842 ACTGCCATTCACTATGAGAGCC 60.159 50.000 0.00 0.00 36.26 4.70
3708 10189 4.744631 CCTTGTTTTAACACTGCCATTCAC 59.255 41.667 0.00 0.00 38.92 3.18
3766 10247 8.956426 ACAACTTTCTTTAGTCTGAATGTCAAA 58.044 29.630 0.00 0.00 32.06 2.69
3767 10248 8.506168 ACAACTTTCTTTAGTCTGAATGTCAA 57.494 30.769 0.00 0.00 32.06 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.