Multiple sequence alignment - TraesCS3B01G099100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G099100 chr3B 100.000 3185 0 0 1 3185 66479861 66476677 0.000000e+00 5882.0
1 TraesCS3B01G099100 chr3B 82.627 967 113 23 1258 2211 66470781 66469857 0.000000e+00 804.0
2 TraesCS3B01G099100 chr3B 97.333 450 11 1 1 449 670339977 670339528 0.000000e+00 763.0
3 TraesCS3B01G099100 chr3B 97.111 450 12 1 1 449 442803600 442804049 0.000000e+00 758.0
4 TraesCS3B01G099100 chr3B 96.882 449 13 1 1 449 751025585 751026032 0.000000e+00 750.0
5 TraesCS3B01G099100 chr3B 74.759 1244 223 57 985 2194 143509667 143510853 1.030000e-129 473.0
6 TraesCS3B01G099100 chr3B 84.615 104 15 1 567 669 66471650 66471547 5.620000e-18 102.0
7 TraesCS3B01G099100 chr3A 89.010 2193 144 40 762 2908 54285402 54283261 0.000000e+00 2625.0
8 TraesCS3B01G099100 chr3A 82.497 937 118 25 1260 2188 54232908 54232010 0.000000e+00 780.0
9 TraesCS3B01G099100 chr3A 74.245 1258 238 58 967 2194 547182035 547183236 1.740000e-122 449.0
10 TraesCS3B01G099100 chr3A 84.810 79 8 2 554 631 547181662 547181737 3.410000e-10 76.8
11 TraesCS3B01G099100 chr3D 94.812 1677 78 4 1511 3185 42687204 42685535 0.000000e+00 2606.0
12 TraesCS3B01G099100 chr3D 95.627 1052 37 6 450 1494 42688332 42687283 0.000000e+00 1679.0
13 TraesCS3B01G099100 chr3D 81.289 962 123 32 1258 2211 42679881 42678969 0.000000e+00 726.0
14 TraesCS3B01G099100 chr3D 74.307 1226 223 56 998 2194 92896344 92895182 4.880000e-118 435.0
15 TraesCS3B01G099100 chr3D 85.897 78 7 2 554 630 92896751 92896677 2.630000e-11 80.5
16 TraesCS3B01G099100 chr1B 97.550 449 11 0 1 449 74836771 74836323 0.000000e+00 769.0
17 TraesCS3B01G099100 chr1B 97.333 450 11 1 1 449 205369195 205369644 0.000000e+00 763.0
18 TraesCS3B01G099100 chr5B 97.111 450 12 1 1 449 655428474 655428923 0.000000e+00 758.0
19 TraesCS3B01G099100 chr5B 96.889 450 13 1 1 449 591112318 591111869 0.000000e+00 752.0
20 TraesCS3B01G099100 chr4A 96.889 450 13 1 1 449 673375942 673376391 0.000000e+00 752.0
21 TraesCS3B01G099100 chr7B 96.667 450 14 1 1 449 592519731 592519282 0.000000e+00 747.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G099100 chr3B 66476677 66479861 3184 True 5882.00 5882 100.0000 1 3185 1 chr3B.!!$R1 3184
1 TraesCS3B01G099100 chr3B 143509667 143510853 1186 False 473.00 473 74.7590 985 2194 1 chr3B.!!$F1 1209
2 TraesCS3B01G099100 chr3B 66469857 66471650 1793 True 453.00 804 83.6210 567 2211 2 chr3B.!!$R3 1644
3 TraesCS3B01G099100 chr3A 54283261 54285402 2141 True 2625.00 2625 89.0100 762 2908 1 chr3A.!!$R2 2146
4 TraesCS3B01G099100 chr3A 54232010 54232908 898 True 780.00 780 82.4970 1260 2188 1 chr3A.!!$R1 928
5 TraesCS3B01G099100 chr3A 547181662 547183236 1574 False 262.90 449 79.5275 554 2194 2 chr3A.!!$F1 1640
6 TraesCS3B01G099100 chr3D 42685535 42688332 2797 True 2142.50 2606 95.2195 450 3185 2 chr3D.!!$R2 2735
7 TraesCS3B01G099100 chr3D 42678969 42679881 912 True 726.00 726 81.2890 1258 2211 1 chr3D.!!$R1 953
8 TraesCS3B01G099100 chr3D 92895182 92896751 1569 True 257.75 435 80.1020 554 2194 2 chr3D.!!$R3 1640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 411 0.034863 TTGAACCGGGACTAATGGGC 60.035 55.0 6.32 0.0 0.0 5.36 F
441 442 0.252239 GGACCATTGCCCCCTTTTCT 60.252 55.0 0.00 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1504 1885 0.167470 TGAGCTAGACGTACGTGCAC 59.833 55.0 28.16 20.78 0.00 4.57 R
2313 2720 0.695347 CTGAAGAGGGCCTTGAGGTT 59.305 55.0 7.89 0.00 33.24 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.919755 AGGAGAAAGCTTAAGTAGTATGGC 58.080 41.667 0.00 0.00 0.00 4.40
25 26 5.663556 AGGAGAAAGCTTAAGTAGTATGGCT 59.336 40.000 0.00 0.00 0.00 4.75
26 27 5.986741 GGAGAAAGCTTAAGTAGTATGGCTC 59.013 44.000 0.00 1.58 0.00 4.70
27 28 5.593010 AGAAAGCTTAAGTAGTATGGCTCG 58.407 41.667 0.00 0.00 0.00 5.03
28 29 4.323553 AAGCTTAAGTAGTATGGCTCGG 57.676 45.455 0.00 0.00 0.00 4.63
29 30 2.628657 AGCTTAAGTAGTATGGCTCGGG 59.371 50.000 4.02 0.00 0.00 5.14
30 31 2.866855 GCTTAAGTAGTATGGCTCGGGC 60.867 54.545 0.00 0.00 37.82 6.13
31 32 2.076207 TAAGTAGTATGGCTCGGGCA 57.924 50.000 10.74 6.05 43.52 5.36
33 34 1.424638 AGTAGTATGGCTCGGGCATT 58.575 50.000 10.74 0.00 46.61 3.56
34 35 1.344763 AGTAGTATGGCTCGGGCATTC 59.655 52.381 10.74 9.12 46.61 2.67
35 36 0.685097 TAGTATGGCTCGGGCATTCC 59.315 55.000 10.74 5.77 46.61 3.01
36 37 1.148273 GTATGGCTCGGGCATTCCA 59.852 57.895 10.74 0.00 46.61 3.53
37 38 0.250901 GTATGGCTCGGGCATTCCAT 60.251 55.000 10.74 5.70 46.61 3.41
38 39 0.036732 TATGGCTCGGGCATTCCATC 59.963 55.000 10.74 0.00 46.61 3.51
39 40 2.974698 GGCTCGGGCATTCCATCG 60.975 66.667 10.74 0.00 40.87 3.84
40 41 2.108976 GCTCGGGCATTCCATCGA 59.891 61.111 0.00 0.00 38.54 3.59
41 42 1.523711 GCTCGGGCATTCCATCGAA 60.524 57.895 0.00 0.00 38.54 3.71
42 43 1.776034 GCTCGGGCATTCCATCGAAC 61.776 60.000 0.00 0.00 38.54 3.95
43 44 0.461870 CTCGGGCATTCCATCGAACA 60.462 55.000 0.00 0.00 34.36 3.18
44 45 0.742990 TCGGGCATTCCATCGAACAC 60.743 55.000 0.00 0.00 34.36 3.32
45 46 1.714899 CGGGCATTCCATCGAACACC 61.715 60.000 0.00 0.00 34.36 4.16
46 47 0.394352 GGGCATTCCATCGAACACCT 60.394 55.000 0.00 0.00 35.00 4.00
47 48 1.017387 GGCATTCCATCGAACACCTC 58.983 55.000 0.00 0.00 0.00 3.85
52 53 0.038618 TCCATCGAACACCTCGTGTG 60.039 55.000 0.00 6.34 46.79 3.82
53 54 1.626654 CCATCGAACACCTCGTGTGC 61.627 60.000 0.00 0.00 46.79 4.57
54 55 0.943835 CATCGAACACCTCGTGTGCA 60.944 55.000 3.88 0.00 46.79 4.57
55 56 0.037326 ATCGAACACCTCGTGTGCAT 60.037 50.000 3.88 0.00 46.79 3.96
56 57 0.599060 TCGAACACCTCGTGTGCATA 59.401 50.000 3.88 0.00 46.79 3.14
57 58 0.992072 CGAACACCTCGTGTGCATAG 59.008 55.000 3.88 0.00 46.79 2.23
58 59 1.359848 GAACACCTCGTGTGCATAGG 58.640 55.000 0.00 0.00 46.79 2.57
59 60 0.973632 AACACCTCGTGTGCATAGGA 59.026 50.000 12.62 9.55 46.79 2.94
60 61 1.066858 AACACCTCGTGTGCATAGGAG 60.067 52.381 22.00 22.00 46.79 3.69
61 62 4.308149 AACACCTCGTGTGCATAGGAGG 62.308 54.545 36.29 36.29 46.79 4.30
62 63 2.202866 CCTCGTGTGCATAGGAGGT 58.797 57.895 32.42 0.00 44.04 3.85
63 64 0.179100 CCTCGTGTGCATAGGAGGTG 60.179 60.000 32.42 16.18 44.04 4.00
64 65 0.817654 CTCGTGTGCATAGGAGGTGA 59.182 55.000 21.42 0.00 0.00 4.02
65 66 0.817654 TCGTGTGCATAGGAGGTGAG 59.182 55.000 1.35 0.00 0.00 3.51
66 67 0.807667 CGTGTGCATAGGAGGTGAGC 60.808 60.000 0.00 0.00 0.00 4.26
67 68 0.539051 GTGTGCATAGGAGGTGAGCT 59.461 55.000 0.00 0.00 0.00 4.09
68 69 1.757118 GTGTGCATAGGAGGTGAGCTA 59.243 52.381 0.00 0.00 0.00 3.32
69 70 2.034878 TGTGCATAGGAGGTGAGCTAG 58.965 52.381 0.00 0.00 0.00 3.42
70 71 2.311463 GTGCATAGGAGGTGAGCTAGA 58.689 52.381 0.00 0.00 0.00 2.43
71 72 2.295909 GTGCATAGGAGGTGAGCTAGAG 59.704 54.545 0.00 0.00 0.00 2.43
72 73 1.272212 GCATAGGAGGTGAGCTAGAGC 59.728 57.143 0.00 0.00 42.49 4.09
73 74 2.591923 CATAGGAGGTGAGCTAGAGCA 58.408 52.381 4.01 0.00 45.16 4.26
74 75 2.060050 TAGGAGGTGAGCTAGAGCAC 57.940 55.000 4.01 0.00 45.16 4.40
79 80 3.914984 GTGAGCTAGAGCACCACAA 57.085 52.632 16.95 0.00 45.16 3.33
80 81 2.169832 GTGAGCTAGAGCACCACAAA 57.830 50.000 16.95 0.00 45.16 2.83
81 82 2.072298 GTGAGCTAGAGCACCACAAAG 58.928 52.381 16.95 0.00 45.16 2.77
82 83 1.082690 GAGCTAGAGCACCACAAAGC 58.917 55.000 4.01 0.00 45.16 3.51
83 84 0.689623 AGCTAGAGCACCACAAAGCT 59.310 50.000 4.01 0.00 45.16 3.74
87 88 4.809070 AGCACCACAAAGCTCTCC 57.191 55.556 0.00 0.00 36.00 3.71
88 89 1.073897 AGCACCACAAAGCTCTCCC 59.926 57.895 0.00 0.00 36.00 4.30
89 90 1.973812 GCACCACAAAGCTCTCCCC 60.974 63.158 0.00 0.00 0.00 4.81
90 91 1.763770 CACCACAAAGCTCTCCCCT 59.236 57.895 0.00 0.00 0.00 4.79
91 92 0.322008 CACCACAAAGCTCTCCCCTC 60.322 60.000 0.00 0.00 0.00 4.30
92 93 1.078848 CCACAAAGCTCTCCCCTCG 60.079 63.158 0.00 0.00 0.00 4.63
93 94 1.743252 CACAAAGCTCTCCCCTCGC 60.743 63.158 0.00 0.00 0.00 5.03
94 95 2.124942 CAAAGCTCTCCCCTCGCC 60.125 66.667 0.00 0.00 0.00 5.54
95 96 3.775654 AAAGCTCTCCCCTCGCCG 61.776 66.667 0.00 0.00 0.00 6.46
106 107 3.350612 CTCGCCGGCCACGAAAAA 61.351 61.111 23.46 0.00 44.60 1.94
107 108 3.588891 CTCGCCGGCCACGAAAAAC 62.589 63.158 23.46 0.00 44.60 2.43
108 109 3.955101 CGCCGGCCACGAAAAACA 61.955 61.111 23.46 0.00 44.60 2.83
109 110 2.050442 GCCGGCCACGAAAAACAG 60.050 61.111 18.11 0.00 44.60 3.16
110 111 2.548295 GCCGGCCACGAAAAACAGA 61.548 57.895 18.11 0.00 44.60 3.41
111 112 1.574428 CCGGCCACGAAAAACAGAG 59.426 57.895 2.24 0.00 44.60 3.35
112 113 1.082104 CGGCCACGAAAAACAGAGC 60.082 57.895 2.24 0.00 44.60 4.09
113 114 1.781025 CGGCCACGAAAAACAGAGCA 61.781 55.000 2.24 0.00 44.60 4.26
114 115 0.040067 GGCCACGAAAAACAGAGCAG 60.040 55.000 0.00 0.00 0.00 4.24
115 116 0.663153 GCCACGAAAAACAGAGCAGT 59.337 50.000 0.00 0.00 0.00 4.40
116 117 1.597937 GCCACGAAAAACAGAGCAGTG 60.598 52.381 0.00 0.00 0.00 3.66
117 118 1.002468 CCACGAAAAACAGAGCAGTGG 60.002 52.381 0.00 0.00 41.09 4.00
118 119 1.002468 CACGAAAAACAGAGCAGTGGG 60.002 52.381 0.00 0.00 0.00 4.61
119 120 1.134220 ACGAAAAACAGAGCAGTGGGA 60.134 47.619 0.00 0.00 0.00 4.37
120 121 1.532868 CGAAAAACAGAGCAGTGGGAG 59.467 52.381 0.00 0.00 0.00 4.30
121 122 2.576615 GAAAAACAGAGCAGTGGGAGT 58.423 47.619 0.00 0.00 0.00 3.85
122 123 1.972872 AAAACAGAGCAGTGGGAGTG 58.027 50.000 0.00 0.00 0.00 3.51
123 124 0.536006 AAACAGAGCAGTGGGAGTGC 60.536 55.000 0.00 0.00 44.65 4.40
128 129 2.745492 GCAGTGGGAGTGCTCTGC 60.745 66.667 13.74 13.74 44.50 4.26
129 130 3.067091 CAGTGGGAGTGCTCTGCT 58.933 61.111 7.25 0.00 32.53 4.24
130 131 1.079266 CAGTGGGAGTGCTCTGCTC 60.079 63.158 7.25 1.84 32.53 4.26
131 132 2.125753 GTGGGAGTGCTCTGCTCG 60.126 66.667 7.25 0.00 34.00 5.03
132 133 4.074526 TGGGAGTGCTCTGCTCGC 62.075 66.667 7.25 7.54 43.47 5.03
146 147 2.282674 TCGCGGGCGAGGGTATAT 60.283 61.111 12.26 0.00 44.01 0.86
147 148 1.002257 TCGCGGGCGAGGGTATATA 60.002 57.895 12.26 0.00 44.01 0.86
148 149 0.394762 TCGCGGGCGAGGGTATATAT 60.395 55.000 12.26 0.00 44.01 0.86
149 150 1.134128 TCGCGGGCGAGGGTATATATA 60.134 52.381 12.26 0.00 44.01 0.86
150 151 1.266175 CGCGGGCGAGGGTATATATAG 59.734 57.143 7.38 0.00 42.83 1.31
151 152 1.612463 GCGGGCGAGGGTATATATAGG 59.388 57.143 0.00 0.00 0.00 2.57
152 153 1.612463 CGGGCGAGGGTATATATAGGC 59.388 57.143 0.00 0.00 0.00 3.93
153 154 2.674420 GGGCGAGGGTATATATAGGCA 58.326 52.381 0.00 0.00 0.00 4.75
154 155 3.036091 GGGCGAGGGTATATATAGGCAA 58.964 50.000 0.00 0.00 0.00 4.52
155 156 3.181468 GGGCGAGGGTATATATAGGCAAC 60.181 52.174 0.00 0.00 0.00 4.17
168 169 2.489040 GGCAACTAATTGGTCCCGG 58.511 57.895 0.00 0.00 36.23 5.73
169 170 0.323087 GGCAACTAATTGGTCCCGGT 60.323 55.000 0.00 0.00 36.23 5.28
170 171 1.541379 GCAACTAATTGGTCCCGGTT 58.459 50.000 0.00 0.00 36.23 4.44
171 172 1.471287 GCAACTAATTGGTCCCGGTTC 59.529 52.381 0.00 0.00 36.23 3.62
172 173 1.735571 CAACTAATTGGTCCCGGTTCG 59.264 52.381 0.00 0.00 31.63 3.95
173 174 0.978907 ACTAATTGGTCCCGGTTCGT 59.021 50.000 0.00 0.00 0.00 3.85
174 175 1.338389 ACTAATTGGTCCCGGTTCGTG 60.338 52.381 0.00 0.00 0.00 4.35
175 176 0.036199 TAATTGGTCCCGGTTCGTGG 60.036 55.000 0.00 0.00 0.00 4.94
176 177 3.912745 ATTGGTCCCGGTTCGTGGC 62.913 63.158 0.00 0.00 0.00 5.01
178 179 4.629523 GGTCCCGGTTCGTGGCAA 62.630 66.667 0.00 0.00 0.00 4.52
179 180 3.047877 GTCCCGGTTCGTGGCAAG 61.048 66.667 0.00 0.00 0.00 4.01
180 181 3.235481 TCCCGGTTCGTGGCAAGA 61.235 61.111 0.00 0.00 0.00 3.02
181 182 2.281208 CCCGGTTCGTGGCAAGAA 60.281 61.111 11.88 11.88 0.00 2.52
182 183 2.613506 CCCGGTTCGTGGCAAGAAC 61.614 63.158 30.13 30.13 45.16 3.01
185 186 2.943653 GTTCGTGGCAAGAACCGG 59.056 61.111 28.57 0.00 41.38 5.28
186 187 2.281208 TTCGTGGCAAGAACCGGG 60.281 61.111 11.88 0.00 0.00 5.73
187 188 2.809307 TTCGTGGCAAGAACCGGGA 61.809 57.895 11.88 0.00 0.00 5.14
188 189 2.999739 TTCGTGGCAAGAACCGGGAC 63.000 60.000 11.88 0.00 0.00 4.46
189 190 2.430367 GTGGCAAGAACCGGGACT 59.570 61.111 6.32 0.73 0.00 3.85
190 191 1.675219 GTGGCAAGAACCGGGACTA 59.325 57.895 6.32 0.00 0.00 2.59
191 192 0.035739 GTGGCAAGAACCGGGACTAA 59.964 55.000 6.32 0.00 0.00 2.24
192 193 0.766131 TGGCAAGAACCGGGACTAAA 59.234 50.000 6.32 0.00 0.00 1.85
193 194 1.271163 TGGCAAGAACCGGGACTAAAG 60.271 52.381 6.32 0.06 0.00 1.85
194 195 1.450025 GCAAGAACCGGGACTAAAGG 58.550 55.000 6.32 0.00 0.00 3.11
195 196 1.949079 GCAAGAACCGGGACTAAAGGG 60.949 57.143 6.32 0.00 0.00 3.95
196 197 0.327259 AAGAACCGGGACTAAAGGGC 59.673 55.000 6.32 0.00 0.00 5.19
197 198 0.838987 AGAACCGGGACTAAAGGGCA 60.839 55.000 6.32 0.00 0.00 5.36
198 199 0.392595 GAACCGGGACTAAAGGGCAG 60.393 60.000 6.32 0.00 0.00 4.85
199 200 2.124695 CCGGGACTAAAGGGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
200 201 2.124695 CGGGACTAAAGGGCAGCC 60.125 66.667 1.26 1.26 0.00 4.85
201 202 2.670148 CGGGACTAAAGGGCAGCCT 61.670 63.158 12.43 0.00 0.00 4.58
202 203 1.691823 GGGACTAAAGGGCAGCCTT 59.308 57.895 12.43 0.00 0.00 4.35
203 204 0.039764 GGGACTAAAGGGCAGCCTTT 59.960 55.000 12.43 7.32 41.97 3.11
204 205 1.177401 GGACTAAAGGGCAGCCTTTG 58.823 55.000 10.08 0.47 39.87 2.77
205 206 1.177401 GACTAAAGGGCAGCCTTTGG 58.823 55.000 10.08 14.43 41.76 3.28
206 207 0.482887 ACTAAAGGGCAGCCTTTGGT 59.517 50.000 10.08 14.87 43.30 3.67
207 208 1.177401 CTAAAGGGCAGCCTTTGGTC 58.823 55.000 10.08 0.00 39.87 4.02
208 209 0.251608 TAAAGGGCAGCCTTTGGTCC 60.252 55.000 10.08 0.00 39.87 4.46
209 210 3.529835 AAGGGCAGCCTTTGGTCCC 62.530 63.158 12.43 0.00 37.24 4.46
212 213 4.660938 GCAGCCTTTGGTCCCGGT 62.661 66.667 0.00 0.00 0.00 5.28
213 214 2.115266 CAGCCTTTGGTCCCGGTT 59.885 61.111 0.00 0.00 0.00 4.44
214 215 1.377229 CAGCCTTTGGTCCCGGTTA 59.623 57.895 0.00 0.00 0.00 2.85
215 216 0.250989 CAGCCTTTGGTCCCGGTTAA 60.251 55.000 0.00 0.00 0.00 2.01
216 217 0.479378 AGCCTTTGGTCCCGGTTAAA 59.521 50.000 0.00 0.00 0.00 1.52
217 218 0.885879 GCCTTTGGTCCCGGTTAAAG 59.114 55.000 0.00 5.43 0.00 1.85
218 219 0.885879 CCTTTGGTCCCGGTTAAAGC 59.114 55.000 0.00 0.00 0.00 3.51
219 220 0.885879 CTTTGGTCCCGGTTAAAGCC 59.114 55.000 0.00 0.00 0.00 4.35
220 221 0.185416 TTTGGTCCCGGTTAAAGCCA 59.815 50.000 0.00 0.00 0.00 4.75
221 222 0.537828 TTGGTCCCGGTTAAAGCCAC 60.538 55.000 0.00 0.00 0.00 5.01
222 223 1.073548 GGTCCCGGTTAAAGCCACA 59.926 57.895 0.00 0.00 0.00 4.17
223 224 0.537828 GGTCCCGGTTAAAGCCACAA 60.538 55.000 0.00 0.00 0.00 3.33
224 225 1.320507 GTCCCGGTTAAAGCCACAAA 58.679 50.000 0.00 0.00 0.00 2.83
225 226 1.001048 GTCCCGGTTAAAGCCACAAAC 60.001 52.381 0.00 0.00 0.00 2.93
226 227 0.315886 CCCGGTTAAAGCCACAAACC 59.684 55.000 0.00 0.00 39.44 3.27
228 229 3.877874 GGTTAAAGCCACAAACCGG 57.122 52.632 0.00 0.00 33.85 5.28
229 230 0.315886 GGTTAAAGCCACAAACCGGG 59.684 55.000 6.32 0.00 33.85 5.73
230 231 1.320507 GTTAAAGCCACAAACCGGGA 58.679 50.000 6.32 0.00 0.00 5.14
231 232 1.001048 GTTAAAGCCACAAACCGGGAC 60.001 52.381 6.32 0.00 0.00 4.46
232 233 0.537828 TAAAGCCACAAACCGGGACC 60.538 55.000 6.32 0.00 0.00 4.46
233 234 2.575455 AAAGCCACAAACCGGGACCA 62.575 55.000 6.32 0.00 0.00 4.02
234 235 2.519780 GCCACAAACCGGGACCAA 60.520 61.111 6.32 0.00 0.00 3.67
235 236 1.906333 GCCACAAACCGGGACCAAT 60.906 57.895 6.32 0.00 0.00 3.16
236 237 1.963679 CCACAAACCGGGACCAATG 59.036 57.895 6.32 0.00 0.00 2.82
237 238 1.531739 CCACAAACCGGGACCAATGG 61.532 60.000 6.32 0.00 0.00 3.16
238 239 0.825840 CACAAACCGGGACCAATGGT 60.826 55.000 3.74 3.74 39.44 3.55
239 240 0.825840 ACAAACCGGGACCAATGGTG 60.826 55.000 10.84 0.00 35.25 4.17
262 263 3.801997 CCAGGAGCGAGGCCCATT 61.802 66.667 0.00 0.00 0.00 3.16
263 264 2.515523 CAGGAGCGAGGCCCATTG 60.516 66.667 0.00 0.00 0.00 2.82
264 265 3.801997 AGGAGCGAGGCCCATTGG 61.802 66.667 0.00 0.00 0.00 3.16
265 266 4.115199 GGAGCGAGGCCCATTGGT 62.115 66.667 0.00 0.00 0.00 3.67
266 267 2.514824 GAGCGAGGCCCATTGGTC 60.515 66.667 0.00 0.00 36.05 4.02
267 268 4.115199 AGCGAGGCCCATTGGTCC 62.115 66.667 0.00 0.00 36.69 4.46
269 270 4.856801 CGAGGCCCATTGGTCCCG 62.857 72.222 0.00 0.00 36.69 5.14
270 271 4.506255 GAGGCCCATTGGTCCCGG 62.506 72.222 0.00 0.00 36.69 5.73
272 273 4.376170 GGCCCATTGGTCCCGGTT 62.376 66.667 0.00 0.00 0.00 4.44
273 274 2.754254 GCCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
274 275 2.437716 CCCATTGGTCCCGGTTCG 60.438 66.667 0.00 0.00 0.00 3.95
275 276 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
276 277 1.743995 CCATTGGTCCCGGTTCGTC 60.744 63.158 0.00 0.00 0.00 4.20
277 278 1.743995 CATTGGTCCCGGTTCGTCC 60.744 63.158 0.00 0.00 0.00 4.79
278 279 2.963101 ATTGGTCCCGGTTCGTCCC 61.963 63.158 0.00 0.00 0.00 4.46
279 280 4.938074 TGGTCCCGGTTCGTCCCA 62.938 66.667 0.00 0.00 0.00 4.37
280 281 4.383861 GGTCCCGGTTCGTCCCAC 62.384 72.222 0.00 0.00 0.00 4.61
281 282 4.383861 GTCCCGGTTCGTCCCACC 62.384 72.222 0.00 0.00 0.00 4.61
282 283 4.938074 TCCCGGTTCGTCCCACCA 62.938 66.667 0.00 0.00 33.36 4.17
283 284 3.943691 CCCGGTTCGTCCCACCAA 61.944 66.667 0.00 0.00 33.36 3.67
284 285 2.667199 CCGGTTCGTCCCACCAAC 60.667 66.667 0.00 0.00 33.36 3.77
285 286 2.667199 CGGTTCGTCCCACCAACC 60.667 66.667 0.00 0.00 36.91 3.77
286 287 2.667199 GGTTCGTCCCACCAACCG 60.667 66.667 0.00 0.00 34.04 4.44
287 288 2.667199 GTTCGTCCCACCAACCGG 60.667 66.667 0.00 0.00 38.77 5.28
288 289 3.943691 TTCGTCCCACCAACCGGG 61.944 66.667 6.32 0.00 46.03 5.73
294 295 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
295 296 1.455959 CCACCAACCGGGACCAAAA 60.456 57.895 6.32 0.00 41.15 2.44
296 297 1.460273 CCACCAACCGGGACCAAAAG 61.460 60.000 6.32 0.00 41.15 2.27
297 298 1.152631 ACCAACCGGGACCAAAAGG 60.153 57.895 6.32 0.00 41.15 3.11
298 299 1.152631 CCAACCGGGACCAAAAGGT 60.153 57.895 6.32 0.00 40.01 3.50
299 300 1.176619 CCAACCGGGACCAAAAGGTC 61.177 60.000 6.32 6.11 40.01 3.85
308 309 3.074504 GACCAAAAGGTCCAAACGAAC 57.925 47.619 3.27 0.00 33.21 3.95
309 310 1.752498 ACCAAAAGGTCCAAACGAACC 59.248 47.619 0.00 0.00 35.69 3.62
310 311 1.268845 CCAAAAGGTCCAAACGAACCG 60.269 52.381 0.00 0.00 40.63 4.44
311 312 1.026584 AAAAGGTCCAAACGAACCGG 58.973 50.000 0.00 0.00 40.63 5.28
312 313 0.820482 AAAGGTCCAAACGAACCGGG 60.820 55.000 6.32 0.00 40.63 5.73
313 314 1.698067 AAGGTCCAAACGAACCGGGA 61.698 55.000 6.32 0.00 40.63 5.14
314 315 3.646554 GTCCAAACGAACCGGGAC 58.353 61.111 6.32 0.00 42.60 4.46
315 316 1.962822 GTCCAAACGAACCGGGACC 60.963 63.158 6.32 0.00 43.14 4.46
316 317 2.111460 CCAAACGAACCGGGACCA 59.889 61.111 6.32 0.00 0.00 4.02
317 318 1.526455 CCAAACGAACCGGGACCAA 60.526 57.895 6.32 0.00 0.00 3.67
318 319 0.891904 CCAAACGAACCGGGACCAAT 60.892 55.000 6.32 0.00 0.00 3.16
319 320 0.239879 CAAACGAACCGGGACCAATG 59.760 55.000 6.32 0.00 0.00 2.82
320 321 0.891904 AAACGAACCGGGACCAATGG 60.892 55.000 6.32 0.00 0.00 3.16
321 322 3.131478 CGAACCGGGACCAATGGC 61.131 66.667 6.32 0.00 0.00 4.40
322 323 2.754254 GAACCGGGACCAATGGCC 60.754 66.667 6.32 0.00 0.00 5.36
323 324 4.376170 AACCGGGACCAATGGCCC 62.376 66.667 18.15 18.15 36.26 5.80
327 328 4.360405 GGGACCAATGGCCCACGT 62.360 66.667 21.67 0.00 38.39 4.49
328 329 3.061848 GGACCAATGGCCCACGTG 61.062 66.667 9.08 9.08 0.00 4.49
329 330 3.061848 GACCAATGGCCCACGTGG 61.062 66.667 28.26 28.26 37.09 4.94
361 362 4.309950 GTGGCTCACGAACCGGGT 62.310 66.667 6.32 0.00 0.00 5.28
362 363 3.998672 TGGCTCACGAACCGGGTC 61.999 66.667 10.31 10.31 0.00 4.46
363 364 4.754667 GGCTCACGAACCGGGTCC 62.755 72.222 15.47 0.00 0.00 4.46
364 365 3.998672 GCTCACGAACCGGGTCCA 61.999 66.667 15.47 0.00 0.00 4.02
365 366 2.738480 CTCACGAACCGGGTCCAA 59.262 61.111 15.47 0.00 0.00 3.53
366 367 1.295423 CTCACGAACCGGGTCCAAT 59.705 57.895 15.47 0.00 0.00 3.16
367 368 1.004320 TCACGAACCGGGTCCAATG 60.004 57.895 15.47 10.37 0.00 2.82
368 369 2.359478 ACGAACCGGGTCCAATGC 60.359 61.111 15.47 0.00 0.00 3.56
369 370 3.131478 CGAACCGGGTCCAATGCC 61.131 66.667 15.47 0.00 0.00 4.40
370 371 2.754254 GAACCGGGTCCAATGCCC 60.754 66.667 8.85 0.00 42.68 5.36
371 372 4.376170 AACCGGGTCCAATGCCCC 62.376 66.667 6.32 0.00 43.18 5.80
374 375 4.141876 CGGGTCCAATGCCCCCAT 62.142 66.667 6.32 0.00 43.18 4.00
375 376 2.368188 GGGTCCAATGCCCCCATT 59.632 61.111 1.18 0.00 42.26 3.16
381 382 2.368188 AATGCCCCCATTGGTCCC 59.632 61.111 1.20 0.00 40.09 4.46
382 383 3.677480 AATGCCCCCATTGGTCCCG 62.677 63.158 1.20 0.00 40.09 5.14
385 386 3.668142 CCCCCATTGGTCCCGGTT 61.668 66.667 0.00 0.00 0.00 4.44
386 387 2.044352 CCCCATTGGTCCCGGTTC 60.044 66.667 0.00 0.00 0.00 3.62
387 388 2.612493 CCCCATTGGTCCCGGTTCT 61.612 63.158 0.00 0.00 0.00 3.01
388 389 1.378514 CCCATTGGTCCCGGTTCTG 60.379 63.158 0.00 0.00 0.00 3.02
389 390 1.378514 CCATTGGTCCCGGTTCTGG 60.379 63.158 0.00 0.00 0.00 3.86
390 391 1.682849 CATTGGTCCCGGTTCTGGA 59.317 57.895 0.00 0.00 0.00 3.86
391 392 0.255890 CATTGGTCCCGGTTCTGGAT 59.744 55.000 0.00 0.00 33.65 3.41
392 393 0.999712 ATTGGTCCCGGTTCTGGATT 59.000 50.000 0.00 0.00 33.65 3.01
393 394 0.037590 TTGGTCCCGGTTCTGGATTG 59.962 55.000 0.00 0.00 33.65 2.67
394 395 0.838554 TGGTCCCGGTTCTGGATTGA 60.839 55.000 0.00 0.00 33.65 2.57
395 396 0.326927 GGTCCCGGTTCTGGATTGAA 59.673 55.000 0.00 0.00 33.65 2.69
396 397 1.450025 GTCCCGGTTCTGGATTGAAC 58.550 55.000 0.00 0.00 43.88 3.18
401 402 3.948735 GTTCTGGATTGAACCGGGA 57.051 52.632 6.32 0.00 40.10 5.14
402 403 1.450025 GTTCTGGATTGAACCGGGAC 58.550 55.000 6.32 0.00 40.10 4.46
403 404 1.003233 GTTCTGGATTGAACCGGGACT 59.997 52.381 6.32 0.00 40.62 3.85
404 405 2.235402 GTTCTGGATTGAACCGGGACTA 59.765 50.000 6.32 0.00 40.62 2.59
405 406 2.542550 TCTGGATTGAACCGGGACTAA 58.457 47.619 6.32 0.00 36.97 2.24
406 407 3.112263 TCTGGATTGAACCGGGACTAAT 58.888 45.455 6.32 0.27 36.97 1.73
407 408 3.118408 TCTGGATTGAACCGGGACTAATG 60.118 47.826 6.32 0.00 36.97 1.90
408 409 2.092646 TGGATTGAACCGGGACTAATGG 60.093 50.000 6.32 0.00 0.00 3.16
409 410 2.572290 GATTGAACCGGGACTAATGGG 58.428 52.381 6.32 0.00 0.00 4.00
410 411 0.034863 TTGAACCGGGACTAATGGGC 60.035 55.000 6.32 0.00 0.00 5.36
411 412 0.912487 TGAACCGGGACTAATGGGCT 60.912 55.000 6.32 0.00 0.00 5.19
412 413 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
413 414 1.921869 AACCGGGACTAATGGGCTGG 61.922 60.000 6.32 0.00 0.00 4.85
414 415 2.203209 CGGGACTAATGGGCTGGC 60.203 66.667 0.00 0.00 0.00 4.85
415 416 2.195956 GGGACTAATGGGCTGGCC 59.804 66.667 14.23 14.23 0.00 5.36
436 437 3.350163 CCTGGACCATTGCCCCCT 61.350 66.667 0.00 0.00 0.00 4.79
437 438 2.772924 CTGGACCATTGCCCCCTT 59.227 61.111 0.00 0.00 0.00 3.95
438 439 1.079073 CTGGACCATTGCCCCCTTT 59.921 57.895 0.00 0.00 0.00 3.11
439 440 0.545071 CTGGACCATTGCCCCCTTTT 60.545 55.000 0.00 0.00 0.00 2.27
440 441 0.544120 TGGACCATTGCCCCCTTTTC 60.544 55.000 0.00 0.00 0.00 2.29
441 442 0.252239 GGACCATTGCCCCCTTTTCT 60.252 55.000 0.00 0.00 0.00 2.52
442 443 1.006639 GGACCATTGCCCCCTTTTCTA 59.993 52.381 0.00 0.00 0.00 2.10
443 444 2.100197 GACCATTGCCCCCTTTTCTAC 58.900 52.381 0.00 0.00 0.00 2.59
444 445 1.716503 ACCATTGCCCCCTTTTCTACT 59.283 47.619 0.00 0.00 0.00 2.57
445 446 2.923629 ACCATTGCCCCCTTTTCTACTA 59.076 45.455 0.00 0.00 0.00 1.82
446 447 3.053619 ACCATTGCCCCCTTTTCTACTAG 60.054 47.826 0.00 0.00 0.00 2.57
447 448 3.053619 CCATTGCCCCCTTTTCTACTAGT 60.054 47.826 0.00 0.00 0.00 2.57
448 449 3.713826 TTGCCCCCTTTTCTACTAGTG 57.286 47.619 5.39 0.00 0.00 2.74
449 450 1.913419 TGCCCCCTTTTCTACTAGTGG 59.087 52.381 5.39 1.87 0.00 4.00
450 451 1.212195 GCCCCCTTTTCTACTAGTGGG 59.788 57.143 5.39 6.17 34.81 4.61
451 452 2.841795 CCCCCTTTTCTACTAGTGGGA 58.158 52.381 13.95 0.00 36.90 4.37
452 453 3.187112 CCCCCTTTTCTACTAGTGGGAA 58.813 50.000 13.95 5.58 36.90 3.97
453 454 3.054582 CCCCCTTTTCTACTAGTGGGAAC 60.055 52.174 13.95 0.00 36.90 3.62
499 500 9.300681 AGAAGTTTCAAGTTATGGATGAAATGA 57.699 29.630 3.80 0.00 42.88 2.57
544 548 9.442047 GGTTTTGAGATGAAGAGAGAAGATAAA 57.558 33.333 0.00 0.00 0.00 1.40
806 932 9.050601 TCCAATAATTTACTTTTTGCCAAACAG 57.949 29.630 1.87 1.87 0.00 3.16
1059 1218 1.505538 CTCCTCCTCATCTTCCCCCTA 59.494 57.143 0.00 0.00 0.00 3.53
1182 1341 1.687628 CAGTTCGTCTCGTCTTGGAC 58.312 55.000 0.00 0.00 0.00 4.02
1326 1640 2.647299 TGGATTTAGTTCCAAGGAGGCA 59.353 45.455 0.00 0.00 42.82 4.75
1408 1722 3.065786 CGTAACGGCCTTCTATGTGAGTA 59.934 47.826 0.00 0.00 0.00 2.59
1411 1725 4.323553 ACGGCCTTCTATGTGAGTATTC 57.676 45.455 0.00 0.00 0.00 1.75
1468 1782 6.242396 TGTGCTAGCCATTTCCTTTAGTTTA 58.758 36.000 13.29 0.00 0.00 2.01
1728 2109 0.806868 TACCAGCTCGTGTAAGTCCG 59.193 55.000 0.00 0.00 0.00 4.79
1970 2377 0.179105 TATAACCGTGCGCCGTTCAT 60.179 50.000 4.18 3.36 33.66 2.57
1980 2387 1.206578 GCCGTTCATCACCGTGTTG 59.793 57.895 3.54 3.54 0.00 3.33
2121 2528 3.276857 CAAGAGCAAGCACATGACCTAT 58.723 45.455 0.00 0.00 0.00 2.57
2150 2557 0.035439 ACCAATAAGGACAGGGCGTG 60.035 55.000 5.50 5.50 41.22 5.34
2190 2597 5.530915 AGAGTGCAACAACAACTAATTAGCA 59.469 36.000 12.54 0.00 41.43 3.49
2234 2641 1.353694 ACACTACTAGTCACCGACCCT 59.646 52.381 0.00 0.00 32.18 4.34
2393 2800 6.820335 AGGAAATTTCTTTTCACCAAAGGAG 58.180 36.000 17.42 0.00 44.67 3.69
2535 2970 2.397549 AGCATTTCTTTGAAAGCACGC 58.602 42.857 0.00 0.67 0.00 5.34
2654 3091 9.869757 ACTTATAAGTTATGGAAATTTTGGCAC 57.130 29.630 12.50 0.00 35.21 5.01
2672 3109 1.978097 CACGCCATTCAACATGAAACG 59.022 47.619 0.00 4.81 40.12 3.60
2778 3215 9.855021 AATATTGTTATGTTTTGTACAGAAGCC 57.145 29.630 0.00 0.00 38.54 4.35
2901 3338 8.893219 TTACTATGGCTGTAGAAATGAGATTG 57.107 34.615 4.83 0.00 0.00 2.67
2916 3353 8.624701 AAATGAGATTGACATTTAGAATTGCG 57.375 30.769 0.00 0.00 43.25 4.85
3034 3471 1.956802 GGCACAACCTAAGCACACC 59.043 57.895 0.00 0.00 34.51 4.16
3045 3482 4.081420 ACCTAAGCACACCAGTTCAGATAG 60.081 45.833 0.00 0.00 0.00 2.08
3065 3502 2.171448 AGCAACCATCCTGACTATGGAC 59.829 50.000 9.02 0.00 45.77 4.02
3086 3523 6.942005 TGGACGAATGCATCCATTAATTCTAT 59.058 34.615 0.00 0.00 41.60 1.98
3155 3592 5.572211 AGCTATGTAAATGATGCACAAACG 58.428 37.500 0.00 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.663556 AGCCATACTACTTAAGCTTTCTCCT 59.336 40.000 3.20 0.00 0.00 3.69
2 3 5.919755 AGCCATACTACTTAAGCTTTCTCC 58.080 41.667 3.20 0.00 0.00 3.71
5 6 4.745620 CCGAGCCATACTACTTAAGCTTTC 59.254 45.833 3.20 0.00 0.00 2.62
6 7 4.443034 CCCGAGCCATACTACTTAAGCTTT 60.443 45.833 3.20 0.00 0.00 3.51
7 8 3.069729 CCCGAGCCATACTACTTAAGCTT 59.930 47.826 3.48 3.48 0.00 3.74
8 9 2.628657 CCCGAGCCATACTACTTAAGCT 59.371 50.000 1.29 0.00 0.00 3.74
9 10 2.866855 GCCCGAGCCATACTACTTAAGC 60.867 54.545 1.29 0.00 0.00 3.09
10 11 2.364324 TGCCCGAGCCATACTACTTAAG 59.636 50.000 0.00 0.00 38.69 1.85
11 12 2.390696 TGCCCGAGCCATACTACTTAA 58.609 47.619 0.00 0.00 38.69 1.85
12 13 2.076207 TGCCCGAGCCATACTACTTA 57.924 50.000 0.00 0.00 38.69 2.24
13 14 1.424638 ATGCCCGAGCCATACTACTT 58.575 50.000 0.00 0.00 38.69 2.24
14 15 1.344763 GAATGCCCGAGCCATACTACT 59.655 52.381 0.00 0.00 38.69 2.57
15 16 1.608283 GGAATGCCCGAGCCATACTAC 60.608 57.143 0.00 0.00 38.69 2.73
16 17 0.685097 GGAATGCCCGAGCCATACTA 59.315 55.000 0.00 0.00 38.69 1.82
17 18 1.344953 TGGAATGCCCGAGCCATACT 61.345 55.000 0.00 0.00 38.69 2.12
18 19 0.250901 ATGGAATGCCCGAGCCATAC 60.251 55.000 0.00 0.00 39.25 2.39
19 20 0.036732 GATGGAATGCCCGAGCCATA 59.963 55.000 0.00 0.00 41.00 2.74
20 21 1.228367 GATGGAATGCCCGAGCCAT 60.228 57.895 0.00 0.00 43.46 4.40
21 22 2.192979 GATGGAATGCCCGAGCCA 59.807 61.111 0.00 0.00 38.69 4.75
22 23 2.940890 TTCGATGGAATGCCCGAGCC 62.941 60.000 0.00 0.00 38.69 4.70
23 24 1.523711 TTCGATGGAATGCCCGAGC 60.524 57.895 0.00 0.00 37.93 5.03
24 25 0.461870 TGTTCGATGGAATGCCCGAG 60.462 55.000 0.00 0.00 37.93 4.63
25 26 0.742990 GTGTTCGATGGAATGCCCGA 60.743 55.000 0.00 0.00 37.93 5.14
26 27 1.714899 GGTGTTCGATGGAATGCCCG 61.715 60.000 0.00 0.00 37.93 6.13
27 28 0.394352 AGGTGTTCGATGGAATGCCC 60.394 55.000 8.77 3.38 34.05 5.36
28 29 1.017387 GAGGTGTTCGATGGAATGCC 58.983 55.000 0.00 0.00 34.05 4.40
39 40 1.067142 TCCTATGCACACGAGGTGTTC 60.067 52.381 12.21 0.00 45.08 3.18
40 41 0.973632 TCCTATGCACACGAGGTGTT 59.026 50.000 12.21 4.95 45.08 3.32
43 44 2.202866 CCTCCTATGCACACGAGGT 58.797 57.895 14.05 0.00 37.67 3.85
44 45 0.179100 CACCTCCTATGCACACGAGG 60.179 60.000 18.67 18.67 46.18 4.63
45 46 0.817654 TCACCTCCTATGCACACGAG 59.182 55.000 0.00 0.00 0.00 4.18
46 47 0.817654 CTCACCTCCTATGCACACGA 59.182 55.000 0.00 0.00 0.00 4.35
47 48 0.807667 GCTCACCTCCTATGCACACG 60.808 60.000 0.00 0.00 0.00 4.49
48 49 0.539051 AGCTCACCTCCTATGCACAC 59.461 55.000 0.00 0.00 0.00 3.82
49 50 2.034878 CTAGCTCACCTCCTATGCACA 58.965 52.381 0.00 0.00 0.00 4.57
50 51 2.295909 CTCTAGCTCACCTCCTATGCAC 59.704 54.545 0.00 0.00 0.00 4.57
51 52 2.591923 CTCTAGCTCACCTCCTATGCA 58.408 52.381 0.00 0.00 0.00 3.96
52 53 1.272212 GCTCTAGCTCACCTCCTATGC 59.728 57.143 0.00 0.00 38.21 3.14
53 54 2.295909 GTGCTCTAGCTCACCTCCTATG 59.704 54.545 3.26 0.00 42.66 2.23
54 55 2.593026 GTGCTCTAGCTCACCTCCTAT 58.407 52.381 3.26 0.00 42.66 2.57
55 56 1.410365 GGTGCTCTAGCTCACCTCCTA 60.410 57.143 19.69 0.00 46.90 2.94
56 57 0.686112 GGTGCTCTAGCTCACCTCCT 60.686 60.000 19.69 0.00 46.90 3.69
57 58 1.819905 GGTGCTCTAGCTCACCTCC 59.180 63.158 19.69 0.00 46.90 4.30
61 62 2.072298 CTTTGTGGTGCTCTAGCTCAC 58.928 52.381 16.47 16.47 41.99 3.51
62 63 1.609061 GCTTTGTGGTGCTCTAGCTCA 60.609 52.381 3.26 0.00 42.66 4.26
63 64 1.082690 GCTTTGTGGTGCTCTAGCTC 58.917 55.000 3.26 0.00 42.66 4.09
64 65 0.689623 AGCTTTGTGGTGCTCTAGCT 59.310 50.000 3.26 0.00 42.66 3.32
65 66 3.239861 AGCTTTGTGGTGCTCTAGC 57.760 52.632 0.00 0.00 42.50 3.42
70 71 1.073897 GGGAGAGCTTTGTGGTGCT 59.926 57.895 0.00 0.00 42.82 4.40
71 72 1.973812 GGGGAGAGCTTTGTGGTGC 60.974 63.158 0.00 0.00 0.00 5.01
72 73 0.322008 GAGGGGAGAGCTTTGTGGTG 60.322 60.000 0.00 0.00 0.00 4.17
73 74 1.831652 CGAGGGGAGAGCTTTGTGGT 61.832 60.000 0.00 0.00 0.00 4.16
74 75 1.078848 CGAGGGGAGAGCTTTGTGG 60.079 63.158 0.00 0.00 0.00 4.17
75 76 1.743252 GCGAGGGGAGAGCTTTGTG 60.743 63.158 0.00 0.00 0.00 3.33
76 77 2.665603 GCGAGGGGAGAGCTTTGT 59.334 61.111 0.00 0.00 0.00 2.83
77 78 2.124942 GGCGAGGGGAGAGCTTTG 60.125 66.667 0.00 0.00 0.00 2.77
78 79 3.775654 CGGCGAGGGGAGAGCTTT 61.776 66.667 0.00 0.00 0.00 3.51
89 90 3.350612 TTTTTCGTGGCCGGCGAG 61.351 61.111 22.54 14.33 39.61 5.03
90 91 3.652000 GTTTTTCGTGGCCGGCGA 61.652 61.111 22.54 15.52 36.51 5.54
91 92 3.872409 CTGTTTTTCGTGGCCGGCG 62.872 63.158 22.54 6.96 33.95 6.46
92 93 2.050442 CTGTTTTTCGTGGCCGGC 60.050 61.111 21.18 21.18 33.95 6.13
93 94 1.574428 CTCTGTTTTTCGTGGCCGG 59.426 57.895 0.00 0.00 33.95 6.13
94 95 1.082104 GCTCTGTTTTTCGTGGCCG 60.082 57.895 0.00 0.00 0.00 6.13
95 96 0.040067 CTGCTCTGTTTTTCGTGGCC 60.040 55.000 0.00 0.00 0.00 5.36
96 97 0.663153 ACTGCTCTGTTTTTCGTGGC 59.337 50.000 0.00 0.00 0.00 5.01
97 98 1.002468 CCACTGCTCTGTTTTTCGTGG 60.002 52.381 0.00 0.00 35.10 4.94
98 99 1.002468 CCCACTGCTCTGTTTTTCGTG 60.002 52.381 0.00 0.00 0.00 4.35
99 100 1.134220 TCCCACTGCTCTGTTTTTCGT 60.134 47.619 0.00 0.00 0.00 3.85
100 101 1.532868 CTCCCACTGCTCTGTTTTTCG 59.467 52.381 0.00 0.00 0.00 3.46
101 102 2.291741 CACTCCCACTGCTCTGTTTTTC 59.708 50.000 0.00 0.00 0.00 2.29
102 103 2.301346 CACTCCCACTGCTCTGTTTTT 58.699 47.619 0.00 0.00 0.00 1.94
103 104 1.972872 CACTCCCACTGCTCTGTTTT 58.027 50.000 0.00 0.00 0.00 2.43
104 105 0.536006 GCACTCCCACTGCTCTGTTT 60.536 55.000 0.00 0.00 0.00 2.83
105 106 1.072159 GCACTCCCACTGCTCTGTT 59.928 57.895 0.00 0.00 0.00 3.16
106 107 1.840650 AGCACTCCCACTGCTCTGT 60.841 57.895 0.00 0.00 41.27 3.41
107 108 3.067091 AGCACTCCCACTGCTCTG 58.933 61.111 0.00 0.00 41.27 3.35
111 112 2.745492 GCAGAGCACTCCCACTGC 60.745 66.667 0.00 0.00 46.25 4.40
112 113 1.079266 GAGCAGAGCACTCCCACTG 60.079 63.158 0.00 0.00 0.00 3.66
113 114 2.644212 CGAGCAGAGCACTCCCACT 61.644 63.158 0.00 0.00 0.00 4.00
114 115 2.125753 CGAGCAGAGCACTCCCAC 60.126 66.667 0.00 0.00 0.00 4.61
115 116 4.074526 GCGAGCAGAGCACTCCCA 62.075 66.667 0.00 0.00 34.19 4.37
129 130 0.394762 ATATATACCCTCGCCCGCGA 60.395 55.000 8.23 11.79 46.87 5.87
130 131 1.266175 CTATATATACCCTCGCCCGCG 59.734 57.143 0.00 0.00 41.35 6.46
131 132 1.612463 CCTATATATACCCTCGCCCGC 59.388 57.143 0.00 0.00 0.00 6.13
132 133 1.612463 GCCTATATATACCCTCGCCCG 59.388 57.143 0.00 0.00 0.00 6.13
133 134 2.674420 TGCCTATATATACCCTCGCCC 58.326 52.381 0.00 0.00 0.00 6.13
134 135 3.705072 AGTTGCCTATATATACCCTCGCC 59.295 47.826 0.00 0.00 0.00 5.54
135 136 6.461110 TTAGTTGCCTATATATACCCTCGC 57.539 41.667 0.00 0.00 0.00 5.03
136 137 7.926555 CCAATTAGTTGCCTATATATACCCTCG 59.073 40.741 0.00 0.00 33.90 4.63
137 138 8.769359 ACCAATTAGTTGCCTATATATACCCTC 58.231 37.037 0.00 0.00 33.90 4.30
138 139 8.695663 ACCAATTAGTTGCCTATATATACCCT 57.304 34.615 0.00 0.00 33.90 4.34
139 140 7.991460 GGACCAATTAGTTGCCTATATATACCC 59.009 40.741 0.00 0.00 33.90 3.69
140 141 7.991460 GGGACCAATTAGTTGCCTATATATACC 59.009 40.741 0.00 0.00 33.90 2.73
141 142 7.709613 CGGGACCAATTAGTTGCCTATATATAC 59.290 40.741 0.00 0.00 33.90 1.47
142 143 7.147620 CCGGGACCAATTAGTTGCCTATATATA 60.148 40.741 0.00 0.00 33.90 0.86
143 144 6.352737 CCGGGACCAATTAGTTGCCTATATAT 60.353 42.308 0.00 0.00 33.90 0.86
144 145 5.046159 CCGGGACCAATTAGTTGCCTATATA 60.046 44.000 0.00 0.00 33.90 0.86
145 146 4.263331 CCGGGACCAATTAGTTGCCTATAT 60.263 45.833 0.00 0.00 33.90 0.86
146 147 3.071892 CCGGGACCAATTAGTTGCCTATA 59.928 47.826 0.00 0.00 33.90 1.31
147 148 2.158667 CCGGGACCAATTAGTTGCCTAT 60.159 50.000 0.00 0.00 33.90 2.57
148 149 1.210967 CCGGGACCAATTAGTTGCCTA 59.789 52.381 0.00 0.00 33.90 3.93
149 150 0.034477 CCGGGACCAATTAGTTGCCT 60.034 55.000 0.00 0.00 33.90 4.75
150 151 0.323087 ACCGGGACCAATTAGTTGCC 60.323 55.000 6.32 0.00 33.90 4.52
151 152 1.471287 GAACCGGGACCAATTAGTTGC 59.529 52.381 6.32 0.00 33.90 4.17
152 153 1.735571 CGAACCGGGACCAATTAGTTG 59.264 52.381 6.32 0.00 35.05 3.16
153 154 1.348696 ACGAACCGGGACCAATTAGTT 59.651 47.619 6.32 0.00 0.00 2.24
154 155 0.978907 ACGAACCGGGACCAATTAGT 59.021 50.000 6.32 0.00 0.00 2.24
155 156 1.365699 CACGAACCGGGACCAATTAG 58.634 55.000 6.32 0.00 28.17 1.73
156 157 0.036199 CCACGAACCGGGACCAATTA 60.036 55.000 6.32 0.00 28.17 1.40
157 158 1.302993 CCACGAACCGGGACCAATT 60.303 57.895 6.32 0.00 28.17 2.32
158 159 2.349755 CCACGAACCGGGACCAAT 59.650 61.111 6.32 0.00 28.17 3.16
159 160 4.629523 GCCACGAACCGGGACCAA 62.630 66.667 6.32 0.00 28.17 3.67
161 162 4.629523 TTGCCACGAACCGGGACC 62.630 66.667 6.32 0.00 28.17 4.46
162 163 2.999739 TTCTTGCCACGAACCGGGAC 63.000 60.000 6.32 0.00 28.17 4.46
163 164 2.809307 TTCTTGCCACGAACCGGGA 61.809 57.895 6.32 0.00 28.17 5.14
164 165 2.281208 TTCTTGCCACGAACCGGG 60.281 61.111 6.32 0.00 0.00 5.73
165 166 2.943653 GTTCTTGCCACGAACCGG 59.056 61.111 0.00 0.00 35.81 5.28
168 169 2.613506 CCCGGTTCTTGCCACGAAC 61.614 63.158 5.56 5.56 39.92 3.95
169 170 2.281208 CCCGGTTCTTGCCACGAA 60.281 61.111 0.00 0.00 0.00 3.85
170 171 3.235481 TCCCGGTTCTTGCCACGA 61.235 61.111 0.00 0.00 0.00 4.35
171 172 2.162338 TAGTCCCGGTTCTTGCCACG 62.162 60.000 0.00 0.00 0.00 4.94
172 173 0.035739 TTAGTCCCGGTTCTTGCCAC 59.964 55.000 0.00 0.00 0.00 5.01
173 174 0.766131 TTTAGTCCCGGTTCTTGCCA 59.234 50.000 0.00 0.00 0.00 4.92
174 175 1.450025 CTTTAGTCCCGGTTCTTGCC 58.550 55.000 0.00 0.00 0.00 4.52
175 176 1.450025 CCTTTAGTCCCGGTTCTTGC 58.550 55.000 0.00 0.00 0.00 4.01
176 177 1.949079 GCCCTTTAGTCCCGGTTCTTG 60.949 57.143 0.00 0.00 0.00 3.02
177 178 0.327259 GCCCTTTAGTCCCGGTTCTT 59.673 55.000 0.00 0.00 0.00 2.52
178 179 0.838987 TGCCCTTTAGTCCCGGTTCT 60.839 55.000 0.00 0.15 0.00 3.01
179 180 0.392595 CTGCCCTTTAGTCCCGGTTC 60.393 60.000 0.00 0.00 0.00 3.62
180 181 1.683441 CTGCCCTTTAGTCCCGGTT 59.317 57.895 0.00 0.00 0.00 4.44
181 182 2.967946 GCTGCCCTTTAGTCCCGGT 61.968 63.158 0.00 0.00 0.00 5.28
182 183 2.124695 GCTGCCCTTTAGTCCCGG 60.125 66.667 0.00 0.00 0.00 5.73
183 184 2.124695 GGCTGCCCTTTAGTCCCG 60.125 66.667 7.66 0.00 0.00 5.14
184 185 3.416351 AGGCTGCCCTTTAGTCCC 58.584 61.111 16.57 0.00 38.74 4.46
192 193 3.984732 GGGACCAAAGGCTGCCCT 61.985 66.667 16.57 0.00 45.77 5.19
195 196 2.757980 TAACCGGGACCAAAGGCTGC 62.758 60.000 6.32 0.00 0.00 5.25
196 197 0.250989 TTAACCGGGACCAAAGGCTG 60.251 55.000 6.32 0.00 0.00 4.85
197 198 0.479378 TTTAACCGGGACCAAAGGCT 59.521 50.000 6.32 0.00 0.00 4.58
198 199 0.885879 CTTTAACCGGGACCAAAGGC 59.114 55.000 6.32 0.00 0.00 4.35
199 200 0.885879 GCTTTAACCGGGACCAAAGG 59.114 55.000 6.32 0.00 0.00 3.11
200 201 0.885879 GGCTTTAACCGGGACCAAAG 59.114 55.000 6.32 10.39 0.00 2.77
201 202 0.185416 TGGCTTTAACCGGGACCAAA 59.815 50.000 6.32 0.00 0.00 3.28
202 203 0.537828 GTGGCTTTAACCGGGACCAA 60.538 55.000 6.32 0.00 0.00 3.67
203 204 1.073548 GTGGCTTTAACCGGGACCA 59.926 57.895 6.32 0.26 0.00 4.02
204 205 0.537828 TTGTGGCTTTAACCGGGACC 60.538 55.000 6.32 0.00 0.00 4.46
205 206 1.001048 GTTTGTGGCTTTAACCGGGAC 60.001 52.381 6.32 0.00 0.00 4.46
206 207 1.320507 GTTTGTGGCTTTAACCGGGA 58.679 50.000 6.32 0.00 0.00 5.14
207 208 0.315886 GGTTTGTGGCTTTAACCGGG 59.684 55.000 6.32 0.00 32.76 5.73
208 209 3.877874 GGTTTGTGGCTTTAACCGG 57.122 52.632 0.00 0.00 32.76 5.28
210 211 0.315886 CCCGGTTTGTGGCTTTAACC 59.684 55.000 0.00 0.00 38.33 2.85
211 212 1.001048 GTCCCGGTTTGTGGCTTTAAC 60.001 52.381 0.00 0.00 0.00 2.01
212 213 1.320507 GTCCCGGTTTGTGGCTTTAA 58.679 50.000 0.00 0.00 0.00 1.52
213 214 0.537828 GGTCCCGGTTTGTGGCTTTA 60.538 55.000 0.00 0.00 0.00 1.85
214 215 1.830847 GGTCCCGGTTTGTGGCTTT 60.831 57.895 0.00 0.00 0.00 3.51
215 216 2.203437 GGTCCCGGTTTGTGGCTT 60.203 61.111 0.00 0.00 0.00 4.35
216 217 2.366153 ATTGGTCCCGGTTTGTGGCT 62.366 55.000 0.00 0.00 0.00 4.75
217 218 1.906333 ATTGGTCCCGGTTTGTGGC 60.906 57.895 0.00 0.00 0.00 5.01
218 219 1.531739 CCATTGGTCCCGGTTTGTGG 61.532 60.000 0.00 0.00 0.00 4.17
219 220 0.825840 ACCATTGGTCCCGGTTTGTG 60.826 55.000 1.37 0.00 0.00 3.33
220 221 0.825840 CACCATTGGTCCCGGTTTGT 60.826 55.000 5.04 0.00 31.02 2.83
221 222 1.531739 CCACCATTGGTCCCGGTTTG 61.532 60.000 5.04 0.00 38.23 2.93
222 223 1.228737 CCACCATTGGTCCCGGTTT 60.229 57.895 5.04 0.00 38.23 3.27
223 224 2.438795 CCACCATTGGTCCCGGTT 59.561 61.111 5.04 0.00 38.23 4.44
232 233 2.681064 CCTGGCCCACCACCATTG 60.681 66.667 0.00 0.00 42.67 2.82
233 234 2.863484 TCCTGGCCCACCACCATT 60.863 61.111 0.00 0.00 42.67 3.16
234 235 3.341629 CTCCTGGCCCACCACCAT 61.342 66.667 0.00 0.00 42.67 3.55
245 246 3.801997 AATGGGCCTCGCTCCTGG 61.802 66.667 4.53 0.00 0.00 4.45
246 247 2.515523 CAATGGGCCTCGCTCCTG 60.516 66.667 4.53 0.00 0.00 3.86
247 248 3.801997 CCAATGGGCCTCGCTCCT 61.802 66.667 4.53 0.00 0.00 3.69
248 249 4.115199 ACCAATGGGCCTCGCTCC 62.115 66.667 4.53 0.00 37.90 4.70
249 250 2.514824 GACCAATGGGCCTCGCTC 60.515 66.667 4.53 0.00 37.90 5.03
256 257 2.754254 GAACCGGGACCAATGGGC 60.754 66.667 6.32 0.00 37.90 5.36
257 258 2.437716 CGAACCGGGACCAATGGG 60.438 66.667 6.32 0.00 41.29 4.00
258 259 1.743995 GACGAACCGGGACCAATGG 60.744 63.158 6.32 0.00 0.00 3.16
259 260 1.743995 GGACGAACCGGGACCAATG 60.744 63.158 6.32 0.00 0.00 2.82
260 261 2.666812 GGACGAACCGGGACCAAT 59.333 61.111 6.32 0.00 0.00 3.16
261 262 3.628982 GGGACGAACCGGGACCAA 61.629 66.667 6.32 0.00 40.11 3.67
262 263 4.938074 TGGGACGAACCGGGACCA 62.938 66.667 6.32 1.29 40.11 4.02
263 264 4.383861 GTGGGACGAACCGGGACC 62.384 72.222 6.32 0.00 40.11 4.46
264 265 4.383861 GGTGGGACGAACCGGGAC 62.384 72.222 6.32 0.00 40.11 4.46
265 266 4.938074 TGGTGGGACGAACCGGGA 62.938 66.667 6.32 0.00 40.86 5.14
266 267 3.943691 TTGGTGGGACGAACCGGG 61.944 66.667 6.32 0.00 40.86 5.73
267 268 2.667199 GTTGGTGGGACGAACCGG 60.667 66.667 0.00 0.00 40.86 5.28
268 269 2.667199 GGTTGGTGGGACGAACCG 60.667 66.667 5.08 0.00 44.79 4.44
270 271 2.667199 CCGGTTGGTGGGACGAAC 60.667 66.667 0.00 0.00 36.30 3.95
277 278 1.455959 TTTTGGTCCCGGTTGGTGG 60.456 57.895 0.00 0.00 34.77 4.61
278 279 1.460273 CCTTTTGGTCCCGGTTGGTG 61.460 60.000 0.00 0.00 34.77 4.17
279 280 1.152631 CCTTTTGGTCCCGGTTGGT 60.153 57.895 0.00 0.00 34.77 3.67
280 281 3.771978 CCTTTTGGTCCCGGTTGG 58.228 61.111 0.00 0.00 34.07 3.77
291 292 1.268845 CCGGTTCGTTTGGACCTTTTG 60.269 52.381 0.00 0.00 0.00 2.44
292 293 1.026584 CCGGTTCGTTTGGACCTTTT 58.973 50.000 0.00 0.00 0.00 2.27
293 294 0.820482 CCCGGTTCGTTTGGACCTTT 60.820 55.000 0.00 0.00 0.00 3.11
294 295 1.228033 CCCGGTTCGTTTGGACCTT 60.228 57.895 0.00 0.00 0.00 3.50
295 296 2.142104 TCCCGGTTCGTTTGGACCT 61.142 57.895 0.00 0.00 0.00 3.85
296 297 1.962822 GTCCCGGTTCGTTTGGACC 60.963 63.158 0.00 0.00 41.14 4.46
297 298 1.962822 GGTCCCGGTTCGTTTGGAC 60.963 63.158 0.00 0.00 45.25 4.02
298 299 1.980784 TTGGTCCCGGTTCGTTTGGA 61.981 55.000 0.00 0.00 0.00 3.53
299 300 0.891904 ATTGGTCCCGGTTCGTTTGG 60.892 55.000 0.00 0.00 0.00 3.28
300 301 0.239879 CATTGGTCCCGGTTCGTTTG 59.760 55.000 0.00 0.00 0.00 2.93
301 302 0.891904 CCATTGGTCCCGGTTCGTTT 60.892 55.000 0.00 0.00 0.00 3.60
302 303 1.302993 CCATTGGTCCCGGTTCGTT 60.303 57.895 0.00 0.00 0.00 3.85
303 304 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
304 305 3.131478 GCCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
305 306 2.754254 GGCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
306 307 4.376170 GGGCCATTGGTCCCGGTT 62.376 66.667 15.98 0.00 42.67 4.44
312 313 3.061848 CCACGTGGGCCATTGGTC 61.062 66.667 27.57 0.54 0.00 4.02
344 345 4.309950 ACCCGGTTCGTGAGCCAC 62.310 66.667 0.00 0.00 0.00 5.01
345 346 3.998672 GACCCGGTTCGTGAGCCA 61.999 66.667 0.00 0.00 0.00 4.75
346 347 4.754667 GGACCCGGTTCGTGAGCC 62.755 72.222 0.00 0.00 0.00 4.70
347 348 2.798148 ATTGGACCCGGTTCGTGAGC 62.798 60.000 0.00 0.00 0.00 4.26
348 349 1.019278 CATTGGACCCGGTTCGTGAG 61.019 60.000 0.00 0.00 0.00 3.51
349 350 1.004320 CATTGGACCCGGTTCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
350 351 2.686816 GCATTGGACCCGGTTCGTG 61.687 63.158 0.00 0.00 0.00 4.35
351 352 2.359478 GCATTGGACCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
352 353 3.131478 GGCATTGGACCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
353 354 2.754254 GGGCATTGGACCCGGTTC 60.754 66.667 0.00 0.00 37.67 3.62
359 360 3.632896 CAATGGGGGCATTGGACC 58.367 61.111 0.00 0.00 43.93 4.46
368 369 3.655350 GAACCGGGACCAATGGGGG 62.655 68.421 6.32 1.69 42.91 5.40
369 370 2.044352 GAACCGGGACCAATGGGG 60.044 66.667 6.32 0.00 44.81 4.96
370 371 1.378514 CAGAACCGGGACCAATGGG 60.379 63.158 6.32 0.00 41.29 4.00
371 372 1.378514 CCAGAACCGGGACCAATGG 60.379 63.158 6.32 0.00 0.00 3.16
372 373 0.255890 ATCCAGAACCGGGACCAATG 59.744 55.000 6.32 0.00 37.23 2.82
373 374 0.999712 AATCCAGAACCGGGACCAAT 59.000 50.000 6.32 0.00 37.23 3.16
374 375 0.037590 CAATCCAGAACCGGGACCAA 59.962 55.000 6.32 0.00 37.23 3.67
375 376 0.838554 TCAATCCAGAACCGGGACCA 60.839 55.000 6.32 0.00 37.23 4.02
376 377 0.326927 TTCAATCCAGAACCGGGACC 59.673 55.000 6.32 0.00 37.23 4.46
377 378 1.450025 GTTCAATCCAGAACCGGGAC 58.550 55.000 6.32 0.00 41.52 4.46
378 379 3.948735 GTTCAATCCAGAACCGGGA 57.051 52.632 6.32 0.00 41.52 5.14
383 384 1.003233 AGTCCCGGTTCAATCCAGAAC 59.997 52.381 0.00 0.00 45.50 3.01
384 385 1.358152 AGTCCCGGTTCAATCCAGAA 58.642 50.000 0.00 0.00 0.00 3.02
385 386 2.241281 TAGTCCCGGTTCAATCCAGA 57.759 50.000 0.00 0.00 0.00 3.86
386 387 3.206150 CATTAGTCCCGGTTCAATCCAG 58.794 50.000 0.00 0.00 0.00 3.86
387 388 2.092646 CCATTAGTCCCGGTTCAATCCA 60.093 50.000 0.00 0.00 0.00 3.41
388 389 2.572290 CCATTAGTCCCGGTTCAATCC 58.428 52.381 0.00 0.00 0.00 3.01
389 390 2.572290 CCCATTAGTCCCGGTTCAATC 58.428 52.381 0.00 0.00 0.00 2.67
390 391 1.409661 GCCCATTAGTCCCGGTTCAAT 60.410 52.381 0.00 0.00 0.00 2.57
391 392 0.034863 GCCCATTAGTCCCGGTTCAA 60.035 55.000 0.00 0.00 0.00 2.69
392 393 0.912487 AGCCCATTAGTCCCGGTTCA 60.912 55.000 0.00 0.00 0.00 3.18
393 394 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
394 395 1.607612 CAGCCCATTAGTCCCGGTT 59.392 57.895 0.00 0.00 0.00 4.44
395 396 2.375345 CCAGCCCATTAGTCCCGGT 61.375 63.158 0.00 0.00 0.00 5.28
396 397 2.510906 CCAGCCCATTAGTCCCGG 59.489 66.667 0.00 0.00 0.00 5.73
397 398 2.203209 GCCAGCCCATTAGTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
398 399 2.195956 GGCCAGCCCATTAGTCCC 59.804 66.667 0.00 0.00 0.00 4.46
419 420 2.460476 AAAGGGGGCAATGGTCCAGG 62.460 60.000 0.00 0.00 42.08 4.45
420 421 0.545071 AAAAGGGGGCAATGGTCCAG 60.545 55.000 0.00 0.00 42.08 3.86
421 422 0.544120 GAAAAGGGGGCAATGGTCCA 60.544 55.000 0.00 0.00 42.08 4.02
422 423 0.252239 AGAAAAGGGGGCAATGGTCC 60.252 55.000 0.00 0.00 38.40 4.46
423 424 2.100197 GTAGAAAAGGGGGCAATGGTC 58.900 52.381 0.00 0.00 0.00 4.02
424 425 1.716503 AGTAGAAAAGGGGGCAATGGT 59.283 47.619 0.00 0.00 0.00 3.55
425 426 2.532250 AGTAGAAAAGGGGGCAATGG 57.468 50.000 0.00 0.00 0.00 3.16
426 427 3.947834 CACTAGTAGAAAAGGGGGCAATG 59.052 47.826 3.59 0.00 0.00 2.82
427 428 3.053619 CCACTAGTAGAAAAGGGGGCAAT 60.054 47.826 3.59 0.00 32.21 3.56
428 429 2.307686 CCACTAGTAGAAAAGGGGGCAA 59.692 50.000 3.59 0.00 32.21 4.52
429 430 1.913419 CCACTAGTAGAAAAGGGGGCA 59.087 52.381 3.59 0.00 32.21 5.36
430 431 2.711978 CCACTAGTAGAAAAGGGGGC 57.288 55.000 3.59 0.00 32.21 5.80
432 433 3.585732 TGTTCCCACTAGTAGAAAAGGGG 59.414 47.826 12.52 9.36 36.92 4.79
433 434 4.903045 TGTTCCCACTAGTAGAAAAGGG 57.097 45.455 3.59 7.28 37.65 3.95
434 435 6.940298 TCATTTGTTCCCACTAGTAGAAAAGG 59.060 38.462 3.59 0.00 0.00 3.11
435 436 7.979444 TCATTTGTTCCCACTAGTAGAAAAG 57.021 36.000 3.59 0.00 0.00 2.27
436 437 8.754991 TTTCATTTGTTCCCACTAGTAGAAAA 57.245 30.769 3.59 2.15 0.00 2.29
437 438 8.934023 ATTTCATTTGTTCCCACTAGTAGAAA 57.066 30.769 3.59 0.00 0.00 2.52
438 439 8.934023 AATTTCATTTGTTCCCACTAGTAGAA 57.066 30.769 3.59 0.00 0.00 2.10
439 440 8.934023 AAATTTCATTTGTTCCCACTAGTAGA 57.066 30.769 3.59 0.00 0.00 2.59
441 442 9.575868 TGTAAATTTCATTTGTTCCCACTAGTA 57.424 29.630 0.00 0.00 33.82 1.82
442 443 8.472007 TGTAAATTTCATTTGTTCCCACTAGT 57.528 30.769 0.00 0.00 33.82 2.57
443 444 9.927668 ATTGTAAATTTCATTTGTTCCCACTAG 57.072 29.630 0.00 0.00 33.82 2.57
445 446 9.625747 AAATTGTAAATTTCATTTGTTCCCACT 57.374 25.926 0.00 0.00 33.82 4.00
507 508 6.839124 TCATCTCAAAACCATAATGCACTT 57.161 33.333 0.00 0.00 0.00 3.16
508 509 6.660521 TCTTCATCTCAAAACCATAATGCACT 59.339 34.615 0.00 0.00 0.00 4.40
510 511 6.885918 TCTCTTCATCTCAAAACCATAATGCA 59.114 34.615 0.00 0.00 0.00 3.96
511 512 7.281774 TCTCTCTTCATCTCAAAACCATAATGC 59.718 37.037 0.00 0.00 0.00 3.56
860 989 6.040504 AGGGGCTATTCAAATTTTAATCGACC 59.959 38.462 11.40 11.40 0.00 4.79
903 1039 7.334090 CCTTATATAAGCTAGATGTGGCACAT 58.666 38.462 31.84 31.84 35.30 3.21
1016 1175 0.680618 CCATGGCTGCAAACTGGAAA 59.319 50.000 0.00 0.00 0.00 3.13
1059 1218 1.003696 GGGCTAAGCACCAAAGAGAGT 59.996 52.381 0.00 0.00 0.00 3.24
1182 1341 4.219507 AGATGATATGTACCGGAGCTCTTG 59.780 45.833 9.46 7.57 0.00 3.02
1326 1640 3.591527 TGTGGAAGAACCCTGAACCATAT 59.408 43.478 0.00 0.00 38.00 1.78
1504 1885 0.167470 TGAGCTAGACGTACGTGCAC 59.833 55.000 28.16 20.78 0.00 4.57
1728 2109 3.259625 GGACTAGCTAGGGGATGATTGAC 59.740 52.174 24.35 0.00 0.00 3.18
1770 2152 6.166279 ACACGTGATATATCATTGATCCACC 58.834 40.000 25.01 8.48 39.30 4.61
1970 2377 1.234821 GAAATCCTGCAACACGGTGA 58.765 50.000 16.29 0.00 0.00 4.02
1980 2387 4.470876 TCGACGTCGAAATCCTGC 57.529 55.556 36.25 0.00 46.30 4.85
2121 2528 5.421056 CCTGTCCTTATTGGTACAGTAGTCA 59.579 44.000 0.00 0.00 42.39 3.41
2190 2597 9.739276 TGTATCTAATCTGAAACCAGAACAAAT 57.261 29.630 0.00 0.00 43.22 2.32
2216 2623 2.444421 CAAGGGTCGGTGACTAGTAGT 58.556 52.381 1.37 1.37 32.47 2.73
2217 2624 1.134560 GCAAGGGTCGGTGACTAGTAG 59.865 57.143 0.00 0.00 32.47 2.57
2218 2625 1.180029 GCAAGGGTCGGTGACTAGTA 58.820 55.000 0.00 0.00 32.47 1.82
2313 2720 0.695347 CTGAAGAGGGCCTTGAGGTT 59.305 55.000 7.89 0.00 33.24 3.50
2393 2800 7.092716 AGAAAACAATTTGTAGGATGTGATGC 58.907 34.615 1.76 0.00 0.00 3.91
2444 2851 6.014669 CCTGGAGAAAGAGAGAAGAGAGAAAA 60.015 42.308 0.00 0.00 0.00 2.29
2629 3066 9.019764 CGTGCCAAAATTTCCATAACTTATAAG 57.980 33.333 11.05 11.05 0.00 1.73
2654 3091 2.330231 ACGTTTCATGTTGAATGGCG 57.670 45.000 0.00 0.64 36.11 5.69
2878 3315 6.989169 GTCAATCTCATTTCTACAGCCATAGT 59.011 38.462 0.00 0.00 0.00 2.12
2914 3351 7.912949 TGATTTCTGCATGTATTATTTTCGC 57.087 32.000 0.00 0.00 0.00 4.70
3034 3471 3.875727 CAGGATGGTTGCTATCTGAACTG 59.124 47.826 0.00 0.00 0.00 3.16
3045 3482 2.565841 GTCCATAGTCAGGATGGTTGC 58.434 52.381 1.78 0.00 43.79 4.17
3065 3502 7.913821 CCATGATAGAATTAATGGATGCATTCG 59.086 37.037 16.40 0.00 41.84 3.34
3086 3523 3.490439 TGAGCAAACAGAAGTCCATGA 57.510 42.857 0.00 0.00 0.00 3.07
3155 3592 3.384348 TGGCCCGTCCAGTCTTAC 58.616 61.111 0.00 0.00 40.72 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.