Multiple sequence alignment - TraesCS3B01G098800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G098800 chr3B 100.000 5839 0 0 1 5839 66191004 66185166 0.000000e+00 10783.0
1 TraesCS3B01G098800 chr3B 80.628 733 103 14 4307 5028 170804708 170805412 1.110000e-146 531.0
2 TraesCS3B01G098800 chr3B 77.056 754 129 24 4282 5023 126652954 126653675 1.530000e-105 394.0
3 TraesCS3B01G098800 chr3B 100.000 28 0 0 183 210 66190692 66190719 1.100000e-02 52.8
4 TraesCS3B01G098800 chr3B 100.000 28 0 0 286 313 66190795 66190822 1.100000e-02 52.8
5 TraesCS3B01G098800 chr3A 96.152 5250 153 17 608 5839 53842423 53837205 0.000000e+00 8530.0
6 TraesCS3B01G098800 chr3A 87.009 331 33 7 221 543 53842884 53842556 1.200000e-96 364.0
7 TraesCS3B01G098800 chr3A 79.710 414 54 22 416 825 697457566 697457953 7.460000e-69 272.0
8 TraesCS3B01G098800 chr3A 86.620 142 17 2 1 142 9477717 9477856 7.830000e-34 156.0
9 TraesCS3B01G098800 chr3D 96.903 3681 89 10 885 4552 42498184 42494516 0.000000e+00 6143.0
10 TraesCS3B01G098800 chr3D 97.314 1266 26 3 4577 5839 42494518 42493258 0.000000e+00 2143.0
11 TraesCS3B01G098800 chr3D 79.808 104 19 2 481 583 473821522 473821420 2.260000e-09 75.0
12 TraesCS3B01G098800 chr3D 97.368 38 1 0 826 863 42498207 42498170 1.360000e-06 65.8
13 TraesCS3B01G098800 chr2D 84.329 753 93 14 4292 5028 612521397 612520654 0.000000e+00 713.0
14 TraesCS3B01G098800 chr2D 88.542 96 11 0 1 96 599795966 599796061 3.700000e-22 117.0
15 TraesCS3B01G098800 chr2D 87.838 74 5 3 3983 4053 612521600 612521528 3.750000e-12 84.2
16 TraesCS3B01G098800 chr1A 84.309 752 92 18 4292 5028 308302570 308301830 0.000000e+00 712.0
17 TraesCS3B01G098800 chr4A 81.301 738 96 17 4307 5031 619159071 619158363 1.420000e-155 560.0
18 TraesCS3B01G098800 chr6B 78.096 767 115 28 4282 5031 649435548 649434818 2.500000e-118 436.0
19 TraesCS3B01G098800 chr6B 80.921 152 26 2 1 150 606964929 606964779 3.700000e-22 117.0
20 TraesCS3B01G098800 chr6D 81.041 269 30 7 481 728 467078725 467078457 1.660000e-45 195.0
21 TraesCS3B01G098800 chr6D 76.218 349 60 13 492 835 132651681 132652011 4.680000e-36 163.0
22 TraesCS3B01G098800 chr6D 76.705 176 28 4 417 580 74904801 74904975 1.040000e-12 86.1
23 TraesCS3B01G098800 chrUn 87.013 154 15 3 1 150 35325953 35325801 1.010000e-37 169.0
24 TraesCS3B01G098800 chr7B 85.906 149 20 1 1 149 297414049 297414196 2.180000e-34 158.0
25 TraesCS3B01G098800 chr7A 85.906 149 17 2 2 150 296478106 296478250 7.830000e-34 156.0
26 TraesCS3B01G098800 chr7A 85.235 149 20 2 3 150 537659674 537659527 1.010000e-32 152.0
27 TraesCS3B01G098800 chr7A 82.237 152 23 3 1 150 717809151 717809002 1.710000e-25 128.0
28 TraesCS3B01G098800 chr7A 78.761 113 17 5 432 542 365106405 365106512 1.050000e-07 69.4
29 TraesCS3B01G098800 chr2B 78.455 246 27 14 481 717 530785075 530784847 2.840000e-28 137.0
30 TraesCS3B01G098800 chr2B 83.871 93 7 5 2280 2370 796738569 796738655 1.350000e-11 82.4
31 TraesCS3B01G098800 chr6A 77.119 236 34 9 492 717 166778216 166778441 1.030000e-22 119.0
32 TraesCS3B01G098800 chr6A 84.783 92 11 3 2278 2369 615815519 615815431 8.060000e-14 89.8
33 TraesCS3B01G098800 chr5B 89.362 94 10 0 3 96 573864926 573865019 1.030000e-22 119.0
34 TraesCS3B01G098800 chr7D 86.316 95 5 6 2280 2373 28566104 28566017 4.820000e-16 97.1
35 TraesCS3B01G098800 chr7D 82.796 93 7 6 2280 2370 571075616 571075531 2.260000e-09 75.0
36 TraesCS3B01G098800 chr7D 80.899 89 13 1 2280 2368 566524747 566524831 3.780000e-07 67.6
37 TraesCS3B01G098800 chr4D 92.063 63 4 1 481 542 503264675 503264737 2.900000e-13 87.9
38 TraesCS3B01G098800 chr4D 82.796 93 7 6 2280 2370 207701904 207701819 2.260000e-09 75.0
39 TraesCS3B01G098800 chr5D 80.645 93 9 6 2280 2370 503112313 503112228 4.880000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G098800 chr3B 66185166 66191004 5838 True 10783.000000 10783 100.0000 1 5839 1 chr3B.!!$R1 5838
1 TraesCS3B01G098800 chr3B 170804708 170805412 704 False 531.000000 531 80.6280 4307 5028 1 chr3B.!!$F2 721
2 TraesCS3B01G098800 chr3B 126652954 126653675 721 False 394.000000 394 77.0560 4282 5023 1 chr3B.!!$F1 741
3 TraesCS3B01G098800 chr3A 53837205 53842884 5679 True 4447.000000 8530 91.5805 221 5839 2 chr3A.!!$R1 5618
4 TraesCS3B01G098800 chr3D 42493258 42498207 4949 True 2783.933333 6143 97.1950 826 5839 3 chr3D.!!$R2 5013
5 TraesCS3B01G098800 chr2D 612520654 612521600 946 True 398.600000 713 86.0835 3983 5028 2 chr2D.!!$R1 1045
6 TraesCS3B01G098800 chr1A 308301830 308302570 740 True 712.000000 712 84.3090 4292 5028 1 chr1A.!!$R1 736
7 TraesCS3B01G098800 chr4A 619158363 619159071 708 True 560.000000 560 81.3010 4307 5031 1 chr4A.!!$R1 724
8 TraesCS3B01G098800 chr6B 649434818 649435548 730 True 436.000000 436 78.0960 4282 5031 1 chr6B.!!$R2 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 439 0.032813 ATCAAACCTGGCCAGATGGG 60.033 55.000 34.91 20.85 40.85 4.00 F
496 503 0.096281 AATGGCACGCGAATTACACG 59.904 50.000 15.93 0.00 0.00 4.49 F
550 557 0.405585 AGGCCAGGCACAACACTATT 59.594 50.000 15.19 0.00 0.00 1.73 F
1692 1814 0.454285 CCAACATGCCAAACTACGCG 60.454 55.000 3.53 3.53 0.00 6.01 F
2476 2601 1.002888 CTCACCTGCATGTTGAGTCCT 59.997 52.381 9.98 0.00 0.00 3.85 F
2801 2926 1.135660 CAGCAAGCTGTTCAGATGCAG 60.136 52.381 22.73 15.79 39.42 4.41 F
3848 3973 0.385974 GCAAGTCATCACCAACACGC 60.386 55.000 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 1682 0.601046 TGGCTGCACTGAAGAAGACG 60.601 55.000 0.50 0.0 0.00 4.18 R
2449 2574 0.536724 ACATGCAGGTGAGCGACATA 59.463 50.000 1.71 0.0 37.31 2.29 R
2476 2601 1.135527 CGGCTTCCGTCATACCTACAA 59.864 52.381 0.00 0.0 42.73 2.41 R
2959 3084 0.453390 GGCATCCTTTTCTTCCGCAG 59.547 55.000 0.00 0.0 0.00 5.18 R
3848 3973 1.184349 GACGAGAAGAACGCTGATCG 58.816 55.000 0.00 0.0 45.38 3.69 R
4616 4798 0.454600 ATGAAGCATTTCGCAGCCTG 59.545 50.000 0.00 0.0 46.13 4.85 R
5813 6036 0.534203 GGACAGGTGCTTCCGAAACA 60.534 55.000 0.00 0.0 41.99 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.903530 AGACCCCCAATTTGTCTTCTT 57.096 42.857 0.00 0.00 35.93 2.52
21 22 4.199002 AGACCCCCAATTTGTCTTCTTT 57.801 40.909 0.00 0.00 35.93 2.52
22 23 3.897505 AGACCCCCAATTTGTCTTCTTTG 59.102 43.478 0.00 0.00 35.93 2.77
23 24 2.368548 ACCCCCAATTTGTCTTCTTTGC 59.631 45.455 0.00 0.00 0.00 3.68
24 25 2.634453 CCCCCAATTTGTCTTCTTTGCT 59.366 45.455 0.00 0.00 0.00 3.91
25 26 3.555586 CCCCCAATTTGTCTTCTTTGCTG 60.556 47.826 0.00 0.00 0.00 4.41
26 27 3.321682 CCCCAATTTGTCTTCTTTGCTGA 59.678 43.478 0.00 0.00 0.00 4.26
27 28 4.553323 CCCAATTTGTCTTCTTTGCTGAG 58.447 43.478 0.00 0.00 0.00 3.35
28 29 4.279169 CCCAATTTGTCTTCTTTGCTGAGA 59.721 41.667 0.00 0.00 0.00 3.27
29 30 5.458891 CCAATTTGTCTTCTTTGCTGAGAG 58.541 41.667 0.00 0.00 0.00 3.20
30 31 4.762956 ATTTGTCTTCTTTGCTGAGAGC 57.237 40.909 0.00 0.00 42.82 4.09
31 32 3.482156 TTGTCTTCTTTGCTGAGAGCT 57.518 42.857 0.00 0.00 42.97 4.09
32 33 3.037431 TGTCTTCTTTGCTGAGAGCTC 57.963 47.619 5.27 5.27 42.97 4.09
33 34 1.991965 GTCTTCTTTGCTGAGAGCTCG 59.008 52.381 8.37 0.00 42.97 5.03
34 35 1.615883 TCTTCTTTGCTGAGAGCTCGT 59.384 47.619 8.37 0.00 42.97 4.18
35 36 1.991965 CTTCTTTGCTGAGAGCTCGTC 59.008 52.381 8.37 7.13 42.97 4.20
36 37 0.961753 TCTTTGCTGAGAGCTCGTCA 59.038 50.000 8.37 11.34 42.97 4.35
37 38 1.067985 TCTTTGCTGAGAGCTCGTCAG 60.068 52.381 26.16 26.16 42.97 3.51
38 39 0.037882 TTTGCTGAGAGCTCGTCAGG 60.038 55.000 28.82 18.14 42.97 3.86
39 40 1.181741 TTGCTGAGAGCTCGTCAGGT 61.182 55.000 28.82 7.74 42.97 4.00
40 41 1.153862 GCTGAGAGCTCGTCAGGTG 60.154 63.158 28.82 15.45 41.60 4.00
41 42 1.872197 GCTGAGAGCTCGTCAGGTGT 61.872 60.000 28.82 6.46 41.60 4.16
42 43 0.170116 CTGAGAGCTCGTCAGGTGTC 59.830 60.000 24.27 10.56 40.15 3.67
43 44 1.244697 TGAGAGCTCGTCAGGTGTCC 61.245 60.000 8.37 0.00 39.21 4.02
44 45 1.228583 AGAGCTCGTCAGGTGTCCA 60.229 57.895 8.37 0.00 0.00 4.02
45 46 0.827925 AGAGCTCGTCAGGTGTCCAA 60.828 55.000 8.37 0.00 0.00 3.53
46 47 0.033504 GAGCTCGTCAGGTGTCCAAA 59.966 55.000 0.00 0.00 0.00 3.28
47 48 0.687354 AGCTCGTCAGGTGTCCAAAT 59.313 50.000 0.00 0.00 0.00 2.32
48 49 1.079503 GCTCGTCAGGTGTCCAAATC 58.920 55.000 0.00 0.00 0.00 2.17
49 50 1.608025 GCTCGTCAGGTGTCCAAATCA 60.608 52.381 0.00 0.00 0.00 2.57
50 51 2.936993 GCTCGTCAGGTGTCCAAATCAT 60.937 50.000 0.00 0.00 0.00 2.45
51 52 3.338249 CTCGTCAGGTGTCCAAATCATT 58.662 45.455 0.00 0.00 0.00 2.57
52 53 3.750371 TCGTCAGGTGTCCAAATCATTT 58.250 40.909 0.00 0.00 0.00 2.32
53 54 3.501828 TCGTCAGGTGTCCAAATCATTTG 59.498 43.478 2.80 2.80 40.32 2.32
54 55 3.501828 CGTCAGGTGTCCAAATCATTTGA 59.498 43.478 11.98 0.00 43.26 2.69
55 56 4.023279 CGTCAGGTGTCCAAATCATTTGAA 60.023 41.667 11.98 0.00 43.26 2.69
56 57 5.507149 CGTCAGGTGTCCAAATCATTTGAAA 60.507 40.000 11.98 0.00 43.26 2.69
57 58 6.279882 GTCAGGTGTCCAAATCATTTGAAAA 58.720 36.000 11.98 0.00 43.26 2.29
58 59 6.930722 GTCAGGTGTCCAAATCATTTGAAAAT 59.069 34.615 11.98 0.00 43.26 1.82
59 60 7.442062 GTCAGGTGTCCAAATCATTTGAAAATT 59.558 33.333 11.98 0.00 43.26 1.82
60 61 7.441760 TCAGGTGTCCAAATCATTTGAAAATTG 59.558 33.333 11.98 3.51 43.26 2.32
61 62 6.711645 AGGTGTCCAAATCATTTGAAAATTGG 59.288 34.615 11.98 13.03 43.26 3.16
62 63 6.709846 GGTGTCCAAATCATTTGAAAATTGGA 59.290 34.615 11.98 15.89 43.26 3.53
63 64 7.095102 GGTGTCCAAATCATTTGAAAATTGGAG 60.095 37.037 11.98 0.00 41.57 3.86
64 65 6.427547 TGTCCAAATCATTTGAAAATTGGAGC 59.572 34.615 11.98 15.03 41.57 4.70
65 66 6.427547 GTCCAAATCATTTGAAAATTGGAGCA 59.572 34.615 11.98 3.97 41.57 4.26
66 67 6.651643 TCCAAATCATTTGAAAATTGGAGCAG 59.348 34.615 11.98 0.00 43.26 4.24
67 68 6.651643 CCAAATCATTTGAAAATTGGAGCAGA 59.348 34.615 11.98 0.00 43.26 4.26
68 69 7.360607 CCAAATCATTTGAAAATTGGAGCAGAC 60.361 37.037 11.98 0.00 43.26 3.51
69 70 5.138125 TCATTTGAAAATTGGAGCAGACC 57.862 39.130 0.00 0.00 0.00 3.85
70 71 4.834496 TCATTTGAAAATTGGAGCAGACCT 59.166 37.500 0.00 0.00 0.00 3.85
71 72 4.853924 TTTGAAAATTGGAGCAGACCTC 57.146 40.909 0.00 0.00 39.98 3.85
72 73 3.507162 TGAAAATTGGAGCAGACCTCA 57.493 42.857 0.00 0.00 42.62 3.86
73 74 3.149196 TGAAAATTGGAGCAGACCTCAC 58.851 45.455 0.00 0.00 42.62 3.51
74 75 1.813513 AAATTGGAGCAGACCTCACG 58.186 50.000 0.00 0.00 42.62 4.35
75 76 0.674895 AATTGGAGCAGACCTCACGC 60.675 55.000 0.00 0.00 42.62 5.34
76 77 1.830587 ATTGGAGCAGACCTCACGCA 61.831 55.000 0.00 0.00 42.62 5.24
77 78 1.830587 TTGGAGCAGACCTCACGCAT 61.831 55.000 0.00 0.00 42.62 4.73
78 79 1.520342 GGAGCAGACCTCACGCATC 60.520 63.158 0.00 0.00 42.62 3.91
79 80 1.216444 GAGCAGACCTCACGCATCA 59.784 57.895 0.00 0.00 40.45 3.07
80 81 0.390340 GAGCAGACCTCACGCATCAA 60.390 55.000 0.00 0.00 40.45 2.57
81 82 0.035317 AGCAGACCTCACGCATCAAA 59.965 50.000 0.00 0.00 0.00 2.69
82 83 1.089920 GCAGACCTCACGCATCAAAT 58.910 50.000 0.00 0.00 0.00 2.32
83 84 1.470098 GCAGACCTCACGCATCAAATT 59.530 47.619 0.00 0.00 0.00 1.82
84 85 2.730090 GCAGACCTCACGCATCAAATTG 60.730 50.000 0.00 0.00 0.00 2.32
85 86 2.485426 CAGACCTCACGCATCAAATTGT 59.515 45.455 0.00 0.00 0.00 2.71
86 87 2.744202 AGACCTCACGCATCAAATTGTC 59.256 45.455 0.00 0.00 0.00 3.18
87 88 2.744202 GACCTCACGCATCAAATTGTCT 59.256 45.455 0.00 0.00 0.00 3.41
88 89 3.932710 GACCTCACGCATCAAATTGTCTA 59.067 43.478 0.00 0.00 0.00 2.59
89 90 4.517285 ACCTCACGCATCAAATTGTCTAT 58.483 39.130 0.00 0.00 0.00 1.98
90 91 4.572389 ACCTCACGCATCAAATTGTCTATC 59.428 41.667 0.00 0.00 0.00 2.08
91 92 4.318333 CCTCACGCATCAAATTGTCTATCG 60.318 45.833 0.00 0.00 0.00 2.92
92 93 3.001228 TCACGCATCAAATTGTCTATCGC 59.999 43.478 0.00 0.00 0.00 4.58
93 94 2.935849 ACGCATCAAATTGTCTATCGCA 59.064 40.909 0.00 0.00 0.00 5.10
94 95 3.242413 ACGCATCAAATTGTCTATCGCAC 60.242 43.478 0.00 0.00 0.00 5.34
95 96 3.242381 CGCATCAAATTGTCTATCGCACA 60.242 43.478 0.00 0.00 0.00 4.57
96 97 4.553351 CGCATCAAATTGTCTATCGCACAT 60.553 41.667 0.00 0.00 0.00 3.21
97 98 5.276270 GCATCAAATTGTCTATCGCACATT 58.724 37.500 0.00 0.00 0.00 2.71
98 99 5.745294 GCATCAAATTGTCTATCGCACATTT 59.255 36.000 0.00 0.00 0.00 2.32
99 100 6.254157 GCATCAAATTGTCTATCGCACATTTT 59.746 34.615 0.00 0.00 30.90 1.82
100 101 7.201461 GCATCAAATTGTCTATCGCACATTTTT 60.201 33.333 0.00 0.00 29.20 1.94
152 153 9.743057 ATATTTGTTTTGATTTTGTTCGTCTGA 57.257 25.926 0.00 0.00 0.00 3.27
153 154 8.647143 ATTTGTTTTGATTTTGTTCGTCTGAT 57.353 26.923 0.00 0.00 0.00 2.90
154 155 7.448588 TTGTTTTGATTTTGTTCGTCTGATG 57.551 32.000 0.00 0.00 0.00 3.07
155 156 6.790282 TGTTTTGATTTTGTTCGTCTGATGA 58.210 32.000 0.00 0.00 0.00 2.92
156 157 7.254137 TGTTTTGATTTTGTTCGTCTGATGAA 58.746 30.769 8.19 8.19 0.00 2.57
157 158 7.920151 TGTTTTGATTTTGTTCGTCTGATGAAT 59.080 29.630 14.83 0.00 0.00 2.57
158 159 9.393249 GTTTTGATTTTGTTCGTCTGATGAATA 57.607 29.630 14.83 9.95 0.00 1.75
164 165 9.912634 ATTTTGTTCGTCTGATGAATATTTTGT 57.087 25.926 14.83 0.00 0.00 2.83
167 168 8.196802 TGTTCGTCTGATGAATATTTTGTAGG 57.803 34.615 14.83 0.00 0.00 3.18
168 169 7.279981 TGTTCGTCTGATGAATATTTTGTAGGG 59.720 37.037 14.83 0.00 0.00 3.53
169 170 5.758296 TCGTCTGATGAATATTTTGTAGGGC 59.242 40.000 0.00 0.00 0.00 5.19
170 171 5.760253 CGTCTGATGAATATTTTGTAGGGCT 59.240 40.000 0.00 0.00 0.00 5.19
171 172 6.073548 CGTCTGATGAATATTTTGTAGGGCTC 60.074 42.308 0.00 0.00 0.00 4.70
172 173 5.991606 TCTGATGAATATTTTGTAGGGCTCG 59.008 40.000 0.00 0.00 0.00 5.03
173 174 5.063204 TGATGAATATTTTGTAGGGCTCGG 58.937 41.667 0.00 0.00 0.00 4.63
174 175 4.497291 TGAATATTTTGTAGGGCTCGGT 57.503 40.909 0.00 0.00 0.00 4.69
175 176 4.850680 TGAATATTTTGTAGGGCTCGGTT 58.149 39.130 0.00 0.00 0.00 4.44
176 177 5.258051 TGAATATTTTGTAGGGCTCGGTTT 58.742 37.500 0.00 0.00 0.00 3.27
177 178 5.124776 TGAATATTTTGTAGGGCTCGGTTTG 59.875 40.000 0.00 0.00 0.00 2.93
178 179 1.611519 TTTTGTAGGGCTCGGTTTGG 58.388 50.000 0.00 0.00 0.00 3.28
179 180 0.891904 TTTGTAGGGCTCGGTTTGGC 60.892 55.000 0.00 0.00 0.00 4.52
180 181 1.774894 TTGTAGGGCTCGGTTTGGCT 61.775 55.000 0.00 0.00 0.00 4.75
181 182 1.745489 GTAGGGCTCGGTTTGGCTG 60.745 63.158 0.00 0.00 0.00 4.85
182 183 1.916273 TAGGGCTCGGTTTGGCTGA 60.916 57.895 0.00 0.00 0.00 4.26
183 184 1.485294 TAGGGCTCGGTTTGGCTGAA 61.485 55.000 0.00 0.00 31.00 3.02
184 185 1.901464 GGGCTCGGTTTGGCTGAAA 60.901 57.895 0.00 0.00 31.00 2.69
185 186 1.460273 GGGCTCGGTTTGGCTGAAAA 61.460 55.000 0.00 0.00 31.00 2.29
186 187 0.387565 GGCTCGGTTTGGCTGAAAAA 59.612 50.000 0.00 0.00 31.00 1.94
187 188 1.000843 GGCTCGGTTTGGCTGAAAAAT 59.999 47.619 0.00 0.00 31.00 1.82
188 189 2.328473 GCTCGGTTTGGCTGAAAAATC 58.672 47.619 0.00 0.00 31.00 2.17
189 190 2.029918 GCTCGGTTTGGCTGAAAAATCT 60.030 45.455 0.00 0.00 31.00 2.40
190 191 3.552890 GCTCGGTTTGGCTGAAAAATCTT 60.553 43.478 0.00 0.00 31.00 2.40
191 192 4.620982 CTCGGTTTGGCTGAAAAATCTTT 58.379 39.130 0.00 0.00 31.00 2.52
192 193 5.017294 TCGGTTTGGCTGAAAAATCTTTT 57.983 34.783 0.00 0.00 0.00 2.27
193 194 4.808364 TCGGTTTGGCTGAAAAATCTTTTG 59.192 37.500 0.00 0.00 0.00 2.44
194 195 4.570369 CGGTTTGGCTGAAAAATCTTTTGT 59.430 37.500 0.00 0.00 0.00 2.83
195 196 5.751028 CGGTTTGGCTGAAAAATCTTTTGTA 59.249 36.000 0.00 0.00 0.00 2.41
196 197 6.256757 CGGTTTGGCTGAAAAATCTTTTGTAA 59.743 34.615 0.00 0.00 0.00 2.41
197 198 7.042119 CGGTTTGGCTGAAAAATCTTTTGTAAT 60.042 33.333 0.00 0.00 0.00 1.89
198 199 8.620416 GGTTTGGCTGAAAAATCTTTTGTAATT 58.380 29.630 0.00 0.00 0.00 1.40
201 202 8.152309 TGGCTGAAAAATCTTTTGTAATTTGG 57.848 30.769 0.00 0.00 0.00 3.28
202 203 7.077605 GGCTGAAAAATCTTTTGTAATTTGGC 58.922 34.615 0.00 0.00 0.00 4.52
203 204 7.041167 GGCTGAAAAATCTTTTGTAATTTGGCT 60.041 33.333 0.00 0.00 0.00 4.75
204 205 8.344831 GCTGAAAAATCTTTTGTAATTTGGCTT 58.655 29.630 0.00 0.00 0.00 4.35
205 206 9.654417 CTGAAAAATCTTTTGTAATTTGGCTTG 57.346 29.630 0.00 0.00 0.00 4.01
206 207 9.171877 TGAAAAATCTTTTGTAATTTGGCTTGT 57.828 25.926 0.00 0.00 0.00 3.16
207 208 9.437045 GAAAAATCTTTTGTAATTTGGCTTGTG 57.563 29.630 0.00 0.00 0.00 3.33
208 209 8.504812 AAAATCTTTTGTAATTTGGCTTGTGT 57.495 26.923 0.00 0.00 0.00 3.72
209 210 7.481275 AATCTTTTGTAATTTGGCTTGTGTG 57.519 32.000 0.00 0.00 0.00 3.82
210 211 4.808364 TCTTTTGTAATTTGGCTTGTGTGC 59.192 37.500 0.00 0.00 0.00 4.57
211 212 3.808466 TTGTAATTTGGCTTGTGTGCA 57.192 38.095 0.00 0.00 34.04 4.57
212 213 3.367992 TGTAATTTGGCTTGTGTGCAG 57.632 42.857 0.00 0.00 34.04 4.41
213 214 2.954989 TGTAATTTGGCTTGTGTGCAGA 59.045 40.909 0.00 0.00 34.04 4.26
214 215 3.573538 TGTAATTTGGCTTGTGTGCAGAT 59.426 39.130 0.00 0.00 34.04 2.90
215 216 2.736144 ATTTGGCTTGTGTGCAGATG 57.264 45.000 0.00 0.00 34.04 2.90
216 217 1.689984 TTTGGCTTGTGTGCAGATGA 58.310 45.000 0.00 0.00 34.04 2.92
217 218 1.241165 TTGGCTTGTGTGCAGATGAG 58.759 50.000 0.00 0.00 34.04 2.90
218 219 1.239296 TGGCTTGTGTGCAGATGAGC 61.239 55.000 11.45 11.45 34.04 4.26
219 220 0.959372 GGCTTGTGTGCAGATGAGCT 60.959 55.000 17.01 0.00 34.99 4.09
246 247 1.745489 GTAGGGCTCGGTTTGGCTG 60.745 63.158 0.00 0.00 0.00 4.85
271 272 3.584834 ACAAAACACACCTTCAGTTTGC 58.415 40.909 0.00 0.00 35.79 3.68
275 276 0.738389 CACACCTTCAGTTTGCGGTT 59.262 50.000 0.00 0.00 0.00 4.44
279 280 0.318107 CCTTCAGTTTGCGGTTGCTG 60.318 55.000 0.00 0.00 43.34 4.41
296 297 1.337703 GCTGAATCACACACAAGCCAA 59.662 47.619 0.00 0.00 0.00 4.52
313 315 9.224058 CACAAGCCAAATTACAAAAGATTTTTG 57.776 29.630 11.55 11.55 35.64 2.44
316 318 6.016360 AGCCAAATTACAAAAGATTTTTGGGC 60.016 34.615 16.08 15.91 42.02 5.36
318 320 6.369799 CAAATTACAAAAGATTTTTGGGCCG 58.630 36.000 16.08 0.12 33.92 6.13
319 321 1.877637 ACAAAAGATTTTTGGGCCGC 58.122 45.000 16.08 0.00 33.92 6.53
320 322 1.139853 ACAAAAGATTTTTGGGCCGCA 59.860 42.857 16.08 0.00 33.92 5.69
321 323 2.224499 ACAAAAGATTTTTGGGCCGCAT 60.224 40.909 16.08 0.00 33.92 4.73
322 324 2.097680 AAAGATTTTTGGGCCGCATG 57.902 45.000 0.00 0.00 0.00 4.06
323 325 1.265236 AAGATTTTTGGGCCGCATGA 58.735 45.000 0.00 0.00 0.00 3.07
343 345 9.950858 CGCATGAAAAATAAATGTTAAACGAAT 57.049 25.926 0.00 0.00 0.00 3.34
394 400 2.807676 CAAGGAAAAGCCCATGTAGGT 58.192 47.619 0.00 0.00 37.37 3.08
395 401 3.165071 CAAGGAAAAGCCCATGTAGGTT 58.835 45.455 0.00 0.00 37.37 3.50
405 411 1.560923 CATGTAGGTTCGAGAAGGCG 58.439 55.000 0.00 0.00 0.00 5.52
406 412 0.460311 ATGTAGGTTCGAGAAGGCGG 59.540 55.000 0.00 0.00 0.00 6.13
409 415 1.601419 TAGGTTCGAGAAGGCGGTGG 61.601 60.000 0.00 0.00 0.00 4.61
433 439 0.032813 ATCAAACCTGGCCAGATGGG 60.033 55.000 34.91 20.85 40.85 4.00
463 469 2.822399 GGCATGACCCGACCTAGG 59.178 66.667 7.41 7.41 0.00 3.02
470 476 2.575532 TGACCCGACCTAGGTTATACG 58.424 52.381 17.53 14.62 37.88 3.06
474 480 0.600057 CGACCTAGGTTATACGGGCC 59.400 60.000 17.53 0.00 0.00 5.80
490 497 3.202001 CCCGAATGGCACGCGAAT 61.202 61.111 15.93 0.00 0.00 3.34
496 503 0.096281 AATGGCACGCGAATTACACG 59.904 50.000 15.93 0.00 0.00 4.49
501 508 3.920553 CGCGAATTACACGGGCCG 61.921 66.667 27.06 27.06 36.96 6.13
542 549 2.756400 CTTACCAGGCCAGGCACA 59.244 61.111 15.37 0.00 0.00 4.57
544 551 1.228429 TTACCAGGCCAGGCACAAC 60.228 57.895 15.37 0.00 0.00 3.32
545 552 2.000825 TTACCAGGCCAGGCACAACA 62.001 55.000 15.37 0.00 0.00 3.33
546 553 2.690653 TACCAGGCCAGGCACAACAC 62.691 60.000 15.37 0.00 0.00 3.32
547 554 2.203394 CAGGCCAGGCACAACACT 60.203 61.111 15.19 0.00 0.00 3.55
550 557 0.405585 AGGCCAGGCACAACACTATT 59.594 50.000 15.19 0.00 0.00 1.73
551 558 1.633432 AGGCCAGGCACAACACTATTA 59.367 47.619 15.19 0.00 0.00 0.98
553 560 3.023832 GGCCAGGCACAACACTATTATT 58.976 45.455 15.19 0.00 0.00 1.40
554 561 4.080015 AGGCCAGGCACAACACTATTATTA 60.080 41.667 15.19 0.00 0.00 0.98
555 562 4.642885 GGCCAGGCACAACACTATTATTAA 59.357 41.667 15.19 0.00 0.00 1.40
556 563 5.126384 GGCCAGGCACAACACTATTATTAAA 59.874 40.000 15.19 0.00 0.00 1.52
557 564 6.033966 GCCAGGCACAACACTATTATTAAAC 58.966 40.000 6.55 0.00 0.00 2.01
558 565 6.255215 CCAGGCACAACACTATTATTAAACG 58.745 40.000 0.00 0.00 0.00 3.60
559 566 6.092944 CCAGGCACAACACTATTATTAAACGA 59.907 38.462 0.00 0.00 0.00 3.85
560 567 7.180079 CAGGCACAACACTATTATTAAACGAG 58.820 38.462 0.00 0.00 0.00 4.18
561 568 5.963586 GGCACAACACTATTATTAAACGAGC 59.036 40.000 0.00 0.00 0.00 5.03
562 569 6.183360 GGCACAACACTATTATTAAACGAGCT 60.183 38.462 0.00 0.00 0.00 4.09
563 570 6.682863 GCACAACACTATTATTAAACGAGCTG 59.317 38.462 0.00 0.00 0.00 4.24
565 572 5.986004 ACACTATTATTAAACGAGCTGGC 57.014 39.130 0.00 0.00 0.00 4.85
567 574 4.213482 CACTATTATTAAACGAGCTGGCCC 59.787 45.833 0.00 0.00 0.00 5.80
569 576 3.290948 TTATTAAACGAGCTGGCCCAT 57.709 42.857 0.00 0.00 0.00 4.00
570 577 1.680338 ATTAAACGAGCTGGCCCATC 58.320 50.000 0.00 0.00 0.00 3.51
580 587 3.845259 GGCCCATCCGCACGTCTA 61.845 66.667 0.00 0.00 0.00 2.59
581 588 2.279517 GCCCATCCGCACGTCTAG 60.280 66.667 0.00 0.00 0.00 2.43
582 589 2.279517 CCCATCCGCACGTCTAGC 60.280 66.667 0.00 0.00 0.00 3.42
583 590 2.279517 CCATCCGCACGTCTAGCC 60.280 66.667 0.00 0.00 0.00 3.93
584 591 2.494445 CATCCGCACGTCTAGCCA 59.506 61.111 0.00 0.00 0.00 4.75
585 592 1.068083 CATCCGCACGTCTAGCCAT 59.932 57.895 0.00 0.00 0.00 4.40
586 593 0.941463 CATCCGCACGTCTAGCCATC 60.941 60.000 0.00 0.00 0.00 3.51
587 594 1.391933 ATCCGCACGTCTAGCCATCA 61.392 55.000 0.00 0.00 0.00 3.07
588 595 1.589993 CCGCACGTCTAGCCATCAG 60.590 63.158 0.00 0.00 0.00 2.90
589 596 2.233654 CGCACGTCTAGCCATCAGC 61.234 63.158 0.00 0.00 44.25 4.26
610 617 5.536161 CAGCACACCCATTATTTAGCCTATT 59.464 40.000 0.00 0.00 0.00 1.73
611 618 5.536161 AGCACACCCATTATTTAGCCTATTG 59.464 40.000 0.00 0.00 0.00 1.90
612 619 5.278957 GCACACCCATTATTTAGCCTATTGG 60.279 44.000 0.00 0.00 0.00 3.16
613 620 5.243730 CACACCCATTATTTAGCCTATTGGG 59.756 44.000 3.58 3.58 42.02 4.12
693 707 3.077556 CGTGCCCAGCCTCTAGGT 61.078 66.667 0.00 0.00 37.57 3.08
740 843 1.376609 GCCAGGCACAACCCGATTAG 61.377 60.000 6.55 0.00 40.58 1.73
858 963 1.566703 TCGTCCTCTGATTCCTCTCCT 59.433 52.381 0.00 0.00 0.00 3.69
1069 1191 4.988716 AGTCCGAGGCCGACACCA 62.989 66.667 11.28 0.00 38.22 4.17
1106 1228 1.301401 CCTTCGACGCCACCTTCAA 60.301 57.895 0.00 0.00 0.00 2.69
1227 1349 2.412112 CCCGAATCCGACTCCGAC 59.588 66.667 0.00 0.00 38.22 4.79
1228 1350 2.119655 CCCGAATCCGACTCCGACT 61.120 63.158 0.00 0.00 38.22 4.18
1229 1351 1.355916 CCGAATCCGACTCCGACTC 59.644 63.158 0.00 0.00 38.22 3.36
1572 1694 0.977395 CCTTCCCCGTCTTCTTCAGT 59.023 55.000 0.00 0.00 0.00 3.41
1575 1697 1.118965 TCCCCGTCTTCTTCAGTGCA 61.119 55.000 0.00 0.00 0.00 4.57
1632 1754 4.753662 TCGTCCGCCTACCCTGCT 62.754 66.667 0.00 0.00 0.00 4.24
1692 1814 0.454285 CCAACATGCCAAACTACGCG 60.454 55.000 3.53 3.53 0.00 6.01
1716 1838 3.739613 ATGCCCGGTTCCTTCCCC 61.740 66.667 0.00 0.00 0.00 4.81
1767 1889 2.594592 GGCGCTTCTGGTGGTGTT 60.595 61.111 7.64 0.00 0.00 3.32
2052 2174 2.093235 AGAGCAGGCTTCATCAGGTAAC 60.093 50.000 0.00 0.00 0.00 2.50
2070 2192 4.947388 GGTAACACCTGCCAATTCTTATGA 59.053 41.667 0.00 0.00 34.73 2.15
2078 2200 6.183360 ACCTGCCAATTCTTATGAAATTCTCG 60.183 38.462 0.00 0.00 35.63 4.04
2079 2201 6.183360 CCTGCCAATTCTTATGAAATTCTCGT 60.183 38.462 0.00 0.00 35.63 4.18
2112 2236 6.561614 CGCTCTATTGTTGAACTAGTAGGAA 58.438 40.000 0.00 0.00 0.00 3.36
2197 2322 5.765182 ACATGTTAGGTTGCAAGCCTATATC 59.235 40.000 24.26 16.58 38.29 1.63
2241 2366 1.176527 AAATTGCACTGCACGCCTAT 58.823 45.000 2.26 0.00 38.71 2.57
2267 2392 7.934665 TGTAGCAAGTCCAGTTACAAAATCTTA 59.065 33.333 0.00 0.00 31.19 2.10
2272 2397 7.759489 AGTCCAGTTACAAAATCTTAATGCA 57.241 32.000 0.00 0.00 0.00 3.96
2299 2424 6.961359 TTGTACTCACTCCGTATCAAAATG 57.039 37.500 0.00 0.00 0.00 2.32
2476 2601 1.002888 CTCACCTGCATGTTGAGTCCT 59.997 52.381 9.98 0.00 0.00 3.85
2555 2680 3.420893 CAACCTGAGCCCAATTCTTACA 58.579 45.455 0.00 0.00 0.00 2.41
2801 2926 1.135660 CAGCAAGCTGTTCAGATGCAG 60.136 52.381 22.73 15.79 39.42 4.41
2959 3084 1.152333 AGGGCTTTGGTGGGGAAAC 60.152 57.895 0.00 0.00 0.00 2.78
2990 3115 2.393271 AGGATGCCAAAGAGAAGTCG 57.607 50.000 0.00 0.00 0.00 4.18
3130 3255 3.393089 AGCACACTGTCTTTACTCAGG 57.607 47.619 0.00 0.00 36.17 3.86
3165 3290 6.326323 AGTTATTGGTTGTGTGAAAGGGATTT 59.674 34.615 0.00 0.00 0.00 2.17
3167 3292 5.428184 TTGGTTGTGTGAAAGGGATTTTT 57.572 34.783 0.00 0.00 0.00 1.94
3367 3492 9.982651 GAGTAGGACTATCAACAGCATAATTTA 57.017 33.333 0.00 0.00 0.00 1.40
3401 3526 1.376037 GCAGAAGGAACCCTGACCG 60.376 63.158 0.00 0.00 32.13 4.79
3412 3537 4.337274 GGAACCCTGACCGGTTTATTATTG 59.663 45.833 9.42 0.00 46.35 1.90
3734 3859 2.741228 GCCATCAAGAGCTGATTCTCGT 60.741 50.000 0.00 0.00 42.46 4.18
3848 3973 0.385974 GCAAGTCATCACCAACACGC 60.386 55.000 0.00 0.00 0.00 5.34
3932 4057 5.826208 TCGTAGCAGTGATAAGAAGGATGTA 59.174 40.000 1.36 0.00 0.00 2.29
4064 4236 3.849911 TGTTGCTCATAAGAGGAGTTCG 58.150 45.455 0.00 0.00 43.44 3.95
4108 4281 4.790878 CTGGATATTGACAATGGCAATCG 58.209 43.478 18.73 0.00 37.22 3.34
4217 4390 6.432403 AGGTCAAAATCTGAGAAGAGAAGT 57.568 37.500 0.00 0.00 33.60 3.01
4268 4441 4.436242 ACATGACACAAGTAGGAGTACG 57.564 45.455 0.00 0.00 33.97 3.67
4571 4752 5.243954 TCCTGATAGGATGGTTAATCAGTCG 59.756 44.000 9.58 0.00 40.06 4.18
4606 4788 1.676529 CTCTGATGGCTTCAAGCATGG 59.323 52.381 12.53 0.00 44.75 3.66
4616 4798 1.527034 TCAAGCATGGCACTGAAGTC 58.473 50.000 0.00 0.00 0.00 3.01
4769 4960 5.068460 GGAAGATATGTGCTCTACTGTGTCT 59.932 44.000 0.00 0.00 0.00 3.41
5458 5673 5.590259 AGCAGCTTAATTGATCCGTATGTTT 59.410 36.000 0.00 0.00 0.00 2.83
5484 5699 6.522946 AGTTCAGTAGTTGTTTACTCCTTCC 58.477 40.000 0.00 0.00 38.33 3.46
5549 5764 1.202794 TGTGCTGCTCAATTCTCACCA 60.203 47.619 1.33 0.00 0.00 4.17
5550 5765 1.881973 GTGCTGCTCAATTCTCACCAA 59.118 47.619 0.00 0.00 0.00 3.67
5551 5766 2.095364 GTGCTGCTCAATTCTCACCAAG 60.095 50.000 0.00 0.00 0.00 3.61
5552 5767 2.157738 GCTGCTCAATTCTCACCAAGT 58.842 47.619 0.00 0.00 0.00 3.16
5644 5867 2.409064 TTTCCTTTTCCCCCTTTCCC 57.591 50.000 0.00 0.00 0.00 3.97
5813 6036 1.201181 TGCTCTTGCACACGTTTGTTT 59.799 42.857 3.29 0.00 45.31 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.897505 CAAAGAAGACAAATTGGGGGTCT 59.102 43.478 0.00 0.00 43.35 3.85
1 2 3.554960 GCAAAGAAGACAAATTGGGGGTC 60.555 47.826 0.00 0.00 0.00 4.46
2 3 2.368548 GCAAAGAAGACAAATTGGGGGT 59.631 45.455 0.00 0.00 0.00 4.95
3 4 2.634453 AGCAAAGAAGACAAATTGGGGG 59.366 45.455 0.00 0.00 0.00 5.40
4 5 3.321682 TCAGCAAAGAAGACAAATTGGGG 59.678 43.478 0.00 0.00 0.00 4.96
5 6 4.279169 TCTCAGCAAAGAAGACAAATTGGG 59.721 41.667 0.00 0.00 0.00 4.12
6 7 5.443185 TCTCAGCAAAGAAGACAAATTGG 57.557 39.130 0.00 0.00 0.00 3.16
7 8 4.916249 GCTCTCAGCAAAGAAGACAAATTG 59.084 41.667 0.00 0.00 41.89 2.32
8 9 4.826183 AGCTCTCAGCAAAGAAGACAAATT 59.174 37.500 0.00 0.00 45.56 1.82
9 10 4.396522 AGCTCTCAGCAAAGAAGACAAAT 58.603 39.130 0.00 0.00 45.56 2.32
10 11 3.812053 GAGCTCTCAGCAAAGAAGACAAA 59.188 43.478 6.43 0.00 45.56 2.83
11 12 3.397482 GAGCTCTCAGCAAAGAAGACAA 58.603 45.455 6.43 0.00 45.56 3.18
12 13 2.608998 CGAGCTCTCAGCAAAGAAGACA 60.609 50.000 12.85 0.00 45.56 3.41
13 14 1.991965 CGAGCTCTCAGCAAAGAAGAC 59.008 52.381 12.85 0.00 45.56 3.01
14 15 1.615883 ACGAGCTCTCAGCAAAGAAGA 59.384 47.619 12.85 0.00 45.56 2.87
15 16 1.991965 GACGAGCTCTCAGCAAAGAAG 59.008 52.381 12.85 0.00 45.56 2.85
16 17 1.341209 TGACGAGCTCTCAGCAAAGAA 59.659 47.619 12.85 0.00 45.56 2.52
17 18 0.961753 TGACGAGCTCTCAGCAAAGA 59.038 50.000 12.85 0.00 45.56 2.52
18 19 1.348276 CTGACGAGCTCTCAGCAAAG 58.652 55.000 22.06 5.17 45.56 2.77
19 20 0.037882 CCTGACGAGCTCTCAGCAAA 60.038 55.000 25.58 4.67 45.56 3.68
20 21 1.181741 ACCTGACGAGCTCTCAGCAA 61.182 55.000 25.58 3.85 45.56 3.91
21 22 1.604879 ACCTGACGAGCTCTCAGCA 60.605 57.895 25.58 13.21 45.56 4.41
22 23 1.153862 CACCTGACGAGCTCTCAGC 60.154 63.158 25.58 10.07 42.84 4.26
23 24 0.170116 GACACCTGACGAGCTCTCAG 59.830 60.000 24.70 24.70 35.78 3.35
24 25 1.244697 GGACACCTGACGAGCTCTCA 61.245 60.000 12.85 13.01 0.00 3.27
25 26 1.244697 TGGACACCTGACGAGCTCTC 61.245 60.000 12.85 9.01 0.00 3.20
26 27 0.827925 TTGGACACCTGACGAGCTCT 60.828 55.000 12.85 0.00 0.00 4.09
27 28 0.033504 TTTGGACACCTGACGAGCTC 59.966 55.000 2.73 2.73 0.00 4.09
28 29 0.687354 ATTTGGACACCTGACGAGCT 59.313 50.000 0.00 0.00 0.00 4.09
29 30 1.079503 GATTTGGACACCTGACGAGC 58.920 55.000 0.00 0.00 0.00 5.03
30 31 2.455674 TGATTTGGACACCTGACGAG 57.544 50.000 0.00 0.00 0.00 4.18
31 32 3.417069 AATGATTTGGACACCTGACGA 57.583 42.857 0.00 0.00 0.00 4.20
32 33 3.501828 TCAAATGATTTGGACACCTGACG 59.498 43.478 17.01 0.00 40.98 4.35
33 34 5.452078 TTCAAATGATTTGGACACCTGAC 57.548 39.130 17.01 0.00 40.98 3.51
34 35 6.477053 TTTTCAAATGATTTGGACACCTGA 57.523 33.333 17.01 0.00 40.98 3.86
35 36 7.308109 CCAATTTTCAAATGATTTGGACACCTG 60.308 37.037 17.01 8.38 40.98 4.00
36 37 6.711645 CCAATTTTCAAATGATTTGGACACCT 59.288 34.615 17.01 0.00 40.98 4.00
37 38 6.709846 TCCAATTTTCAAATGATTTGGACACC 59.290 34.615 17.01 0.00 40.98 4.16
38 39 7.571798 GCTCCAATTTTCAAATGATTTGGACAC 60.572 37.037 17.01 9.06 40.98 3.67
39 40 6.427547 GCTCCAATTTTCAAATGATTTGGACA 59.572 34.615 17.01 2.75 40.98 4.02
40 41 6.427547 TGCTCCAATTTTCAAATGATTTGGAC 59.572 34.615 17.01 12.42 40.98 4.02
41 42 6.531923 TGCTCCAATTTTCAAATGATTTGGA 58.468 32.000 17.01 6.42 40.98 3.53
42 43 6.651643 TCTGCTCCAATTTTCAAATGATTTGG 59.348 34.615 17.01 0.98 40.98 3.28
43 44 7.360607 GGTCTGCTCCAATTTTCAAATGATTTG 60.361 37.037 11.54 11.54 41.96 2.32
44 45 6.652062 GGTCTGCTCCAATTTTCAAATGATTT 59.348 34.615 0.00 0.00 0.00 2.17
45 46 6.013984 AGGTCTGCTCCAATTTTCAAATGATT 60.014 34.615 0.00 0.00 0.00 2.57
46 47 5.482878 AGGTCTGCTCCAATTTTCAAATGAT 59.517 36.000 0.00 0.00 0.00 2.45
47 48 4.834496 AGGTCTGCTCCAATTTTCAAATGA 59.166 37.500 0.00 0.00 0.00 2.57
48 49 5.143376 AGGTCTGCTCCAATTTTCAAATG 57.857 39.130 0.00 0.00 0.00 2.32
49 50 4.834496 TGAGGTCTGCTCCAATTTTCAAAT 59.166 37.500 0.00 0.00 0.00 2.32
50 51 4.037923 GTGAGGTCTGCTCCAATTTTCAAA 59.962 41.667 0.00 0.00 0.00 2.69
51 52 3.569701 GTGAGGTCTGCTCCAATTTTCAA 59.430 43.478 0.00 0.00 0.00 2.69
52 53 3.149196 GTGAGGTCTGCTCCAATTTTCA 58.851 45.455 0.00 0.00 0.00 2.69
53 54 2.160417 CGTGAGGTCTGCTCCAATTTTC 59.840 50.000 0.00 0.00 0.00 2.29
54 55 2.154462 CGTGAGGTCTGCTCCAATTTT 58.846 47.619 0.00 0.00 0.00 1.82
55 56 1.813513 CGTGAGGTCTGCTCCAATTT 58.186 50.000 0.00 0.00 0.00 1.82
56 57 0.674895 GCGTGAGGTCTGCTCCAATT 60.675 55.000 0.00 0.00 0.00 2.32
57 58 1.078848 GCGTGAGGTCTGCTCCAAT 60.079 57.895 0.00 0.00 0.00 3.16
58 59 1.830587 ATGCGTGAGGTCTGCTCCAA 61.831 55.000 0.00 0.00 0.00 3.53
59 60 2.230994 GATGCGTGAGGTCTGCTCCA 62.231 60.000 0.00 0.00 0.00 3.86
60 61 1.520342 GATGCGTGAGGTCTGCTCC 60.520 63.158 0.00 0.00 0.00 4.70
61 62 0.390340 TTGATGCGTGAGGTCTGCTC 60.390 55.000 0.00 0.00 0.00 4.26
62 63 0.035317 TTTGATGCGTGAGGTCTGCT 59.965 50.000 0.00 0.00 0.00 4.24
63 64 1.089920 ATTTGATGCGTGAGGTCTGC 58.910 50.000 0.00 0.00 0.00 4.26
64 65 2.485426 ACAATTTGATGCGTGAGGTCTG 59.515 45.455 2.79 0.00 0.00 3.51
65 66 2.744202 GACAATTTGATGCGTGAGGTCT 59.256 45.455 2.79 0.00 0.00 3.85
66 67 2.744202 AGACAATTTGATGCGTGAGGTC 59.256 45.455 2.79 0.00 0.00 3.85
67 68 2.783135 AGACAATTTGATGCGTGAGGT 58.217 42.857 2.79 0.00 0.00 3.85
68 69 4.318333 CGATAGACAATTTGATGCGTGAGG 60.318 45.833 2.79 0.00 39.76 3.86
69 70 4.755388 CGATAGACAATTTGATGCGTGAG 58.245 43.478 2.79 0.00 39.76 3.51
70 71 3.001228 GCGATAGACAATTTGATGCGTGA 59.999 43.478 2.79 0.00 39.76 4.35
71 72 3.242381 TGCGATAGACAATTTGATGCGTG 60.242 43.478 2.79 0.00 39.76 5.34
72 73 2.935849 TGCGATAGACAATTTGATGCGT 59.064 40.909 2.79 0.00 39.76 5.24
73 74 3.242381 TGTGCGATAGACAATTTGATGCG 60.242 43.478 2.79 1.26 39.76 4.73
74 75 4.277257 TGTGCGATAGACAATTTGATGC 57.723 40.909 2.79 0.00 39.76 3.91
75 76 7.745022 AAAATGTGCGATAGACAATTTGATG 57.255 32.000 2.79 0.00 32.24 3.07
126 127 9.743057 TCAGACGAACAAAATCAAAACAAATAT 57.257 25.926 0.00 0.00 0.00 1.28
127 128 9.743057 ATCAGACGAACAAAATCAAAACAAATA 57.257 25.926 0.00 0.00 0.00 1.40
128 129 8.542132 CATCAGACGAACAAAATCAAAACAAAT 58.458 29.630 0.00 0.00 0.00 2.32
129 130 7.757173 TCATCAGACGAACAAAATCAAAACAAA 59.243 29.630 0.00 0.00 0.00 2.83
130 131 7.254137 TCATCAGACGAACAAAATCAAAACAA 58.746 30.769 0.00 0.00 0.00 2.83
131 132 6.790282 TCATCAGACGAACAAAATCAAAACA 58.210 32.000 0.00 0.00 0.00 2.83
132 133 7.678194 TTCATCAGACGAACAAAATCAAAAC 57.322 32.000 0.00 0.00 0.00 2.43
138 139 9.912634 ACAAAATATTCATCAGACGAACAAAAT 57.087 25.926 0.00 0.00 0.00 1.82
141 142 8.664798 CCTACAAAATATTCATCAGACGAACAA 58.335 33.333 0.00 0.00 0.00 2.83
142 143 7.279981 CCCTACAAAATATTCATCAGACGAACA 59.720 37.037 0.00 0.00 0.00 3.18
143 144 7.630924 CCCTACAAAATATTCATCAGACGAAC 58.369 38.462 0.00 0.00 0.00 3.95
144 145 6.260050 GCCCTACAAAATATTCATCAGACGAA 59.740 38.462 0.00 0.00 0.00 3.85
145 146 5.758296 GCCCTACAAAATATTCATCAGACGA 59.242 40.000 0.00 0.00 0.00 4.20
146 147 5.760253 AGCCCTACAAAATATTCATCAGACG 59.240 40.000 0.00 0.00 0.00 4.18
147 148 6.073548 CGAGCCCTACAAAATATTCATCAGAC 60.074 42.308 0.00 0.00 0.00 3.51
148 149 5.991606 CGAGCCCTACAAAATATTCATCAGA 59.008 40.000 0.00 0.00 0.00 3.27
149 150 5.180117 CCGAGCCCTACAAAATATTCATCAG 59.820 44.000 0.00 0.00 0.00 2.90
150 151 5.063204 CCGAGCCCTACAAAATATTCATCA 58.937 41.667 0.00 0.00 0.00 3.07
151 152 5.063880 ACCGAGCCCTACAAAATATTCATC 58.936 41.667 0.00 0.00 0.00 2.92
152 153 5.048846 ACCGAGCCCTACAAAATATTCAT 57.951 39.130 0.00 0.00 0.00 2.57
153 154 4.497291 ACCGAGCCCTACAAAATATTCA 57.503 40.909 0.00 0.00 0.00 2.57
154 155 5.449999 CCAAACCGAGCCCTACAAAATATTC 60.450 44.000 0.00 0.00 0.00 1.75
155 156 4.401202 CCAAACCGAGCCCTACAAAATATT 59.599 41.667 0.00 0.00 0.00 1.28
156 157 3.951680 CCAAACCGAGCCCTACAAAATAT 59.048 43.478 0.00 0.00 0.00 1.28
157 158 3.349022 CCAAACCGAGCCCTACAAAATA 58.651 45.455 0.00 0.00 0.00 1.40
158 159 2.167662 CCAAACCGAGCCCTACAAAAT 58.832 47.619 0.00 0.00 0.00 1.82
159 160 1.611519 CCAAACCGAGCCCTACAAAA 58.388 50.000 0.00 0.00 0.00 2.44
160 161 0.891904 GCCAAACCGAGCCCTACAAA 60.892 55.000 0.00 0.00 0.00 2.83
161 162 1.302993 GCCAAACCGAGCCCTACAA 60.303 57.895 0.00 0.00 0.00 2.41
162 163 2.221299 AGCCAAACCGAGCCCTACA 61.221 57.895 0.00 0.00 0.00 2.74
163 164 1.745489 CAGCCAAACCGAGCCCTAC 60.745 63.158 0.00 0.00 0.00 3.18
164 165 1.485294 TTCAGCCAAACCGAGCCCTA 61.485 55.000 0.00 0.00 0.00 3.53
165 166 2.351924 TTTCAGCCAAACCGAGCCCT 62.352 55.000 0.00 0.00 0.00 5.19
166 167 1.460273 TTTTCAGCCAAACCGAGCCC 61.460 55.000 0.00 0.00 0.00 5.19
167 168 0.387565 TTTTTCAGCCAAACCGAGCC 59.612 50.000 0.00 0.00 0.00 4.70
168 169 2.029918 AGATTTTTCAGCCAAACCGAGC 60.030 45.455 0.00 0.00 0.00 5.03
169 170 3.923017 AGATTTTTCAGCCAAACCGAG 57.077 42.857 0.00 0.00 0.00 4.63
170 171 4.664150 AAAGATTTTTCAGCCAAACCGA 57.336 36.364 0.00 0.00 0.00 4.69
171 172 4.570369 ACAAAAGATTTTTCAGCCAAACCG 59.430 37.500 0.00 0.00 0.00 4.44
172 173 7.546778 TTACAAAAGATTTTTCAGCCAAACC 57.453 32.000 0.00 0.00 0.00 3.27
175 176 8.619546 CCAAATTACAAAAGATTTTTCAGCCAA 58.380 29.630 0.00 0.00 0.00 4.52
176 177 7.255070 GCCAAATTACAAAAGATTTTTCAGCCA 60.255 33.333 0.00 0.00 0.00 4.75
177 178 7.041167 AGCCAAATTACAAAAGATTTTTCAGCC 60.041 33.333 0.00 0.00 0.00 4.85
178 179 7.864686 AGCCAAATTACAAAAGATTTTTCAGC 58.135 30.769 0.00 0.00 0.00 4.26
179 180 9.654417 CAAGCCAAATTACAAAAGATTTTTCAG 57.346 29.630 0.00 0.00 0.00 3.02
180 181 9.171877 ACAAGCCAAATTACAAAAGATTTTTCA 57.828 25.926 0.00 0.00 0.00 2.69
181 182 9.437045 CACAAGCCAAATTACAAAAGATTTTTC 57.563 29.630 0.00 0.00 0.00 2.29
182 183 8.955388 ACACAAGCCAAATTACAAAAGATTTTT 58.045 25.926 0.00 0.00 0.00 1.94
183 184 8.397148 CACACAAGCCAAATTACAAAAGATTTT 58.603 29.630 0.00 0.00 0.00 1.82
184 185 7.467131 GCACACAAGCCAAATTACAAAAGATTT 60.467 33.333 0.00 0.00 0.00 2.17
185 186 6.018016 GCACACAAGCCAAATTACAAAAGATT 60.018 34.615 0.00 0.00 0.00 2.40
186 187 5.466393 GCACACAAGCCAAATTACAAAAGAT 59.534 36.000 0.00 0.00 0.00 2.40
187 188 4.808364 GCACACAAGCCAAATTACAAAAGA 59.192 37.500 0.00 0.00 0.00 2.52
188 189 4.569966 TGCACACAAGCCAAATTACAAAAG 59.430 37.500 0.00 0.00 0.00 2.27
189 190 4.507710 TGCACACAAGCCAAATTACAAAA 58.492 34.783 0.00 0.00 0.00 2.44
190 191 4.118410 CTGCACACAAGCCAAATTACAAA 58.882 39.130 0.00 0.00 0.00 2.83
191 192 3.382865 TCTGCACACAAGCCAAATTACAA 59.617 39.130 0.00 0.00 0.00 2.41
192 193 2.954989 TCTGCACACAAGCCAAATTACA 59.045 40.909 0.00 0.00 0.00 2.41
193 194 3.641437 TCTGCACACAAGCCAAATTAC 57.359 42.857 0.00 0.00 0.00 1.89
194 195 3.825585 TCATCTGCACACAAGCCAAATTA 59.174 39.130 0.00 0.00 0.00 1.40
195 196 2.629137 TCATCTGCACACAAGCCAAATT 59.371 40.909 0.00 0.00 0.00 1.82
196 197 2.230508 CTCATCTGCACACAAGCCAAAT 59.769 45.455 0.00 0.00 0.00 2.32
197 198 1.610038 CTCATCTGCACACAAGCCAAA 59.390 47.619 0.00 0.00 0.00 3.28
198 199 1.241165 CTCATCTGCACACAAGCCAA 58.759 50.000 0.00 0.00 0.00 4.52
199 200 1.239296 GCTCATCTGCACACAAGCCA 61.239 55.000 0.00 0.00 0.00 4.75
200 201 0.959372 AGCTCATCTGCACACAAGCC 60.959 55.000 3.48 0.00 34.99 4.35
201 202 0.168348 CAGCTCATCTGCACACAAGC 59.832 55.000 0.00 0.00 35.78 4.01
202 203 0.803117 CCAGCTCATCTGCACACAAG 59.197 55.000 0.00 0.00 41.50 3.16
203 204 0.397564 TCCAGCTCATCTGCACACAA 59.602 50.000 0.00 0.00 41.50 3.33
204 205 0.036671 CTCCAGCTCATCTGCACACA 60.037 55.000 0.00 0.00 41.50 3.72
205 206 0.743701 CCTCCAGCTCATCTGCACAC 60.744 60.000 0.00 0.00 41.50 3.82
206 207 0.906282 TCCTCCAGCTCATCTGCACA 60.906 55.000 0.00 0.00 41.50 4.57
207 208 0.469070 ATCCTCCAGCTCATCTGCAC 59.531 55.000 0.00 0.00 41.50 4.57
208 209 1.134189 CAATCCTCCAGCTCATCTGCA 60.134 52.381 0.00 0.00 41.50 4.41
209 210 1.134159 ACAATCCTCCAGCTCATCTGC 60.134 52.381 0.00 0.00 41.50 4.26
210 211 3.244146 CCTACAATCCTCCAGCTCATCTG 60.244 52.174 0.00 0.00 42.49 2.90
211 212 2.971330 CCTACAATCCTCCAGCTCATCT 59.029 50.000 0.00 0.00 0.00 2.90
212 213 2.038295 CCCTACAATCCTCCAGCTCATC 59.962 54.545 0.00 0.00 0.00 2.92
213 214 2.053244 CCCTACAATCCTCCAGCTCAT 58.947 52.381 0.00 0.00 0.00 2.90
214 215 1.500474 CCCTACAATCCTCCAGCTCA 58.500 55.000 0.00 0.00 0.00 4.26
215 216 0.107643 GCCCTACAATCCTCCAGCTC 59.892 60.000 0.00 0.00 0.00 4.09
216 217 0.327000 AGCCCTACAATCCTCCAGCT 60.327 55.000 0.00 0.00 0.00 4.24
217 218 0.107643 GAGCCCTACAATCCTCCAGC 59.892 60.000 0.00 0.00 0.00 4.85
218 219 0.390860 CGAGCCCTACAATCCTCCAG 59.609 60.000 0.00 0.00 0.00 3.86
219 220 1.048724 CCGAGCCCTACAATCCTCCA 61.049 60.000 0.00 0.00 0.00 3.86
246 247 6.589454 CAAACTGAAGGTGTGTTTTGTTTTC 58.411 36.000 0.00 0.00 32.42 2.29
271 272 0.943673 TGTGTGTGATTCAGCAACCG 59.056 50.000 0.00 0.00 0.00 4.44
275 276 0.953727 GGCTTGTGTGTGATTCAGCA 59.046 50.000 0.00 0.00 0.00 4.41
279 280 5.527951 TGTAATTTGGCTTGTGTGTGATTC 58.472 37.500 0.00 0.00 0.00 2.52
296 297 4.454161 GCGGCCCAAAAATCTTTTGTAATT 59.546 37.500 0.00 0.00 0.00 1.40
313 315 3.530535 ACATTTATTTTTCATGCGGCCC 58.469 40.909 0.00 0.00 0.00 5.80
316 318 7.943952 TCGTTTAACATTTATTTTTCATGCGG 58.056 30.769 0.00 0.00 0.00 5.69
343 345 7.867921 TCTTGGGCTTACATCTTTTCCTATTA 58.132 34.615 0.00 0.00 0.00 0.98
344 346 6.731467 TCTTGGGCTTACATCTTTTCCTATT 58.269 36.000 0.00 0.00 0.00 1.73
353 355 2.619074 GCACCTTCTTGGGCTTACATCT 60.619 50.000 0.00 0.00 41.11 2.90
394 400 3.589654 CTGCCACCGCCTTCTCGAA 62.590 63.158 0.00 0.00 0.00 3.71
395 401 4.069232 CTGCCACCGCCTTCTCGA 62.069 66.667 0.00 0.00 0.00 4.04
405 411 1.463674 CCAGGTTTGATACTGCCACC 58.536 55.000 0.00 0.00 33.43 4.61
406 412 0.811281 GCCAGGTTTGATACTGCCAC 59.189 55.000 0.00 0.00 33.43 5.01
409 415 1.098050 CTGGCCAGGTTTGATACTGC 58.902 55.000 26.14 0.00 33.43 4.40
446 452 1.623542 AACCTAGGTCGGGTCATGCC 61.624 60.000 16.64 0.00 35.83 4.40
447 453 1.117150 TAACCTAGGTCGGGTCATGC 58.883 55.000 16.64 0.00 35.83 4.06
450 456 2.575532 CGTATAACCTAGGTCGGGTCA 58.424 52.381 16.64 0.00 35.83 4.02
457 463 0.829182 CGGGCCCGTATAACCTAGGT 60.829 60.000 36.64 9.21 34.35 3.08
461 467 0.395312 CATTCGGGCCCGTATAACCT 59.605 55.000 41.57 16.30 40.74 3.50
463 469 2.922779 CCATTCGGGCCCGTATAAC 58.077 57.895 41.57 2.98 40.74 1.89
474 480 0.315869 GTAATTCGCGTGCCATTCGG 60.316 55.000 5.77 0.00 0.00 4.30
477 483 0.096281 CGTGTAATTCGCGTGCCATT 59.904 50.000 5.77 3.50 43.87 3.16
536 543 6.183360 GCTCGTTTAATAATAGTGTTGTGCCT 60.183 38.462 0.00 0.00 0.00 4.75
537 544 5.963586 GCTCGTTTAATAATAGTGTTGTGCC 59.036 40.000 0.00 0.00 0.00 5.01
539 546 7.180079 CCAGCTCGTTTAATAATAGTGTTGTG 58.820 38.462 0.00 0.00 0.00 3.33
540 547 6.183360 GCCAGCTCGTTTAATAATAGTGTTGT 60.183 38.462 0.00 0.00 0.00 3.32
542 549 5.296035 GGCCAGCTCGTTTAATAATAGTGTT 59.704 40.000 0.00 0.00 0.00 3.32
544 551 4.213482 GGGCCAGCTCGTTTAATAATAGTG 59.787 45.833 4.39 0.00 0.00 2.74
545 552 4.141574 TGGGCCAGCTCGTTTAATAATAGT 60.142 41.667 0.00 0.00 0.00 2.12
546 553 4.385825 TGGGCCAGCTCGTTTAATAATAG 58.614 43.478 0.00 0.00 0.00 1.73
547 554 4.425180 TGGGCCAGCTCGTTTAATAATA 57.575 40.909 0.00 0.00 0.00 0.98
550 557 2.486548 GGATGGGCCAGCTCGTTTAATA 60.487 50.000 22.72 0.00 36.34 0.98
551 558 1.680338 GATGGGCCAGCTCGTTTAAT 58.320 50.000 15.96 0.00 0.00 1.40
553 560 1.223487 GGATGGGCCAGCTCGTTTA 59.777 57.895 22.72 0.00 36.34 2.01
554 561 2.044946 GGATGGGCCAGCTCGTTT 60.045 61.111 22.72 0.00 36.34 3.60
555 562 4.473520 CGGATGGGCCAGCTCGTT 62.474 66.667 22.72 0.00 35.94 3.85
563 570 3.792053 CTAGACGTGCGGATGGGCC 62.792 68.421 0.00 0.00 0.00 5.80
565 572 2.279517 GCTAGACGTGCGGATGGG 60.280 66.667 0.00 0.00 0.00 4.00
567 574 0.941463 GATGGCTAGACGTGCGGATG 60.941 60.000 0.00 0.00 0.00 3.51
569 576 2.004808 CTGATGGCTAGACGTGCGGA 62.005 60.000 0.00 0.00 0.00 5.54
570 577 1.589993 CTGATGGCTAGACGTGCGG 60.590 63.158 0.00 0.00 0.00 5.69
573 580 0.108662 TGTGCTGATGGCTAGACGTG 60.109 55.000 0.00 0.00 42.39 4.49
574 581 0.108615 GTGTGCTGATGGCTAGACGT 60.109 55.000 0.00 0.00 42.39 4.34
575 582 0.807667 GGTGTGCTGATGGCTAGACG 60.808 60.000 0.00 0.00 42.39 4.18
576 583 0.462759 GGGTGTGCTGATGGCTAGAC 60.463 60.000 0.00 0.00 42.39 2.59
577 584 0.909133 TGGGTGTGCTGATGGCTAGA 60.909 55.000 0.00 0.00 42.39 2.43
578 585 0.182061 ATGGGTGTGCTGATGGCTAG 59.818 55.000 0.00 0.00 42.39 3.42
580 587 0.625316 TAATGGGTGTGCTGATGGCT 59.375 50.000 0.00 0.00 42.39 4.75
581 588 1.696063 ATAATGGGTGTGCTGATGGC 58.304 50.000 0.00 0.00 42.22 4.40
582 589 4.261741 GCTAAATAATGGGTGTGCTGATGG 60.262 45.833 0.00 0.00 0.00 3.51
583 590 4.261741 GGCTAAATAATGGGTGTGCTGATG 60.262 45.833 0.00 0.00 0.00 3.07
584 591 3.891366 GGCTAAATAATGGGTGTGCTGAT 59.109 43.478 0.00 0.00 0.00 2.90
585 592 3.053693 AGGCTAAATAATGGGTGTGCTGA 60.054 43.478 0.00 0.00 0.00 4.26
586 593 3.290710 AGGCTAAATAATGGGTGTGCTG 58.709 45.455 0.00 0.00 0.00 4.41
587 594 3.669939 AGGCTAAATAATGGGTGTGCT 57.330 42.857 0.00 0.00 0.00 4.40
588 595 5.278957 CCAATAGGCTAAATAATGGGTGTGC 60.279 44.000 0.00 0.00 0.00 4.57
589 596 5.243730 CCCAATAGGCTAAATAATGGGTGTG 59.756 44.000 17.60 1.59 38.20 3.82
674 681 2.759973 CTAGAGGCTGGGCACGGA 60.760 66.667 0.00 0.00 0.00 4.69
717 820 3.384532 GGGTTGTGCCTGGCATGG 61.385 66.667 26.22 0.00 41.91 3.66
720 823 2.130821 TAATCGGGTTGTGCCTGGCA 62.131 55.000 19.30 19.30 43.94 4.92
724 827 1.077716 GGCTAATCGGGTTGTGCCT 60.078 57.895 11.08 0.00 37.60 4.75
760 863 4.530857 GCGTGCCTAGCCCGTGAT 62.531 66.667 0.00 0.00 0.00 3.06
769 872 2.126385 CGTTACCACGCGTGCCTA 60.126 61.111 33.17 20.47 40.18 3.93
1208 1330 3.912907 CGGAGTCGGATTCGGGGG 61.913 72.222 0.00 0.00 36.95 5.40
1270 1392 2.683933 GGCGGAGGACTTGGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
1428 1550 2.782222 GCCGCCATCTAGGTCGTCA 61.782 63.158 0.00 0.00 40.61 4.35
1560 1682 0.601046 TGGCTGCACTGAAGAAGACG 60.601 55.000 0.50 0.00 0.00 4.18
1767 1889 4.641645 CCAACGCCTGGCAGGACA 62.642 66.667 37.07 0.00 37.67 4.02
2052 2174 6.870769 AGAATTTCATAAGAATTGGCAGGTG 58.129 36.000 0.00 0.00 32.89 4.00
2068 2190 3.424302 GCGCACATGTTACGAGAATTTCA 60.424 43.478 19.41 0.00 0.00 2.69
2070 2192 2.742053 AGCGCACATGTTACGAGAATTT 59.258 40.909 19.41 0.00 0.00 1.82
2078 2200 4.092821 TCAACAATAGAGCGCACATGTTAC 59.907 41.667 11.47 0.00 30.48 2.50
2079 2201 4.249661 TCAACAATAGAGCGCACATGTTA 58.750 39.130 11.47 3.85 30.48 2.41
2112 2236 8.206189 CAGGACCATCAGGCAAATTTTAATTAT 58.794 33.333 0.00 0.00 39.06 1.28
2184 2308 9.889388 ATTATAGAGATAGGATATAGGCTTGCA 57.111 33.333 0.00 0.00 0.00 4.08
2227 2352 1.766143 GCTACATAGGCGTGCAGTGC 61.766 60.000 8.58 8.58 0.00 4.40
2241 2366 6.296026 AGATTTTGTAACTGGACTTGCTACA 58.704 36.000 0.00 0.00 0.00 2.74
2267 2392 4.518970 ACGGAGTGAGTACAAAATTGCATT 59.481 37.500 0.00 0.00 42.51 3.56
2272 2397 7.972832 TTTGATACGGAGTGAGTACAAAATT 57.027 32.000 0.00 0.00 45.73 1.82
2320 2445 3.870419 ACGTTCGTGTTTGTAGGCTAAAA 59.130 39.130 0.00 0.00 0.00 1.52
2334 2459 9.016623 TCTGTATCAAAATATAAGACGTTCGTG 57.983 33.333 1.74 0.00 0.00 4.35
2449 2574 0.536724 ACATGCAGGTGAGCGACATA 59.463 50.000 1.71 0.00 37.31 2.29
2476 2601 1.135527 CGGCTTCCGTCATACCTACAA 59.864 52.381 0.00 0.00 42.73 2.41
2555 2680 1.912043 AGCTGCTTAATGGTCTCCACT 59.088 47.619 0.00 0.00 35.80 4.00
2684 2809 0.591170 GACCACCAACATCCACGTTG 59.409 55.000 0.00 0.00 44.78 4.10
2801 2926 0.815734 ACTGCTGGAATTGCATCTGC 59.184 50.000 0.00 1.11 39.86 4.26
2959 3084 0.453390 GGCATCCTTTTCTTCCGCAG 59.547 55.000 0.00 0.00 0.00 5.18
2990 3115 7.923414 AATCCAACTAGTCAAACATTACCTC 57.077 36.000 0.00 0.00 0.00 3.85
3130 3255 6.636850 CACACAACCAATAACTAAAGAACTGC 59.363 38.462 0.00 0.00 0.00 4.40
3331 3456 8.440771 TGTTGATAGTCCTACTCTGAGATATCA 58.559 37.037 12.44 11.04 0.00 2.15
3367 3492 6.883744 TCCTTCTGCAGTTTTAAACCAAAAT 58.116 32.000 14.67 0.00 38.36 1.82
3401 3526 6.856426 GCGATCTGTAAAGCCAATAATAAACC 59.144 38.462 0.00 0.00 0.00 3.27
3848 3973 1.184349 GACGAGAAGAACGCTGATCG 58.816 55.000 0.00 0.00 45.38 3.69
4064 4236 6.018098 CCAGCAATTCATCTTCAGATACAGAC 60.018 42.308 0.00 0.00 32.63 3.51
4108 4281 5.749620 CAGCATCATGTCTAGATTTCTTGC 58.250 41.667 0.00 3.89 0.00 4.01
4217 4390 7.073598 TGAATATTATCACCATCCTCTCCCAAA 59.926 37.037 0.00 0.00 0.00 3.28
4268 4441 4.511527 TCTTGCCATCTGTCTTCATCTTC 58.488 43.478 0.00 0.00 0.00 2.87
4571 4752 1.620819 TCAGAGTCTGAACCAGCTTCC 59.379 52.381 20.65 0.00 37.57 3.46
4606 4788 2.675056 CGCAGCCTGACTTCAGTGC 61.675 63.158 10.41 10.41 42.27 4.40
4616 4798 0.454600 ATGAAGCATTTCGCAGCCTG 59.545 50.000 0.00 0.00 46.13 4.85
4740 4931 2.672098 AGAGCACATATCTTCCTCGGT 58.328 47.619 0.00 0.00 0.00 4.69
4769 4960 3.446873 GTCCATGTTGCCCATTAATGTCA 59.553 43.478 14.25 8.78 0.00 3.58
5484 5699 5.163824 ACAGCACAATTGTCTACATTCATCG 60.164 40.000 8.48 0.00 0.00 3.84
5535 5750 2.161211 GCAGACTTGGTGAGAATTGAGC 59.839 50.000 0.00 0.00 0.00 4.26
5549 5764 8.635765 TCAAGACATTTATTTTAGGCAGACTT 57.364 30.769 0.00 0.00 0.00 3.01
5550 5765 7.885399 ACTCAAGACATTTATTTTAGGCAGACT 59.115 33.333 0.00 0.00 0.00 3.24
5551 5766 8.045176 ACTCAAGACATTTATTTTAGGCAGAC 57.955 34.615 0.00 0.00 0.00 3.51
5552 5767 8.635765 AACTCAAGACATTTATTTTAGGCAGA 57.364 30.769 0.00 0.00 0.00 4.26
5805 6028 2.277834 GTGCTTCCGAAACAAACAAACG 59.722 45.455 0.00 0.00 0.00 3.60
5813 6036 0.534203 GGACAGGTGCTTCCGAAACA 60.534 55.000 0.00 0.00 41.99 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.