Multiple sequence alignment - TraesCS3B01G098400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G098400 chr3B 100.000 6180 0 0 1 6180 65565885 65559706 0.000000e+00 11413.0
1 TraesCS3B01G098400 chr3B 80.899 356 45 14 1726 2063 756077986 756078336 6.150000e-65 259.0
2 TraesCS3B01G098400 chr3D 94.284 2869 137 13 1372 4224 42083998 42086855 0.000000e+00 4364.0
3 TraesCS3B01G098400 chr3D 91.066 1623 87 36 4571 6180 42087151 42088728 0.000000e+00 2141.0
4 TraesCS3B01G098400 chr3D 92.644 503 20 6 646 1134 42083175 42083674 0.000000e+00 708.0
5 TraesCS3B01G098400 chr3D 82.105 380 51 7 4 376 42063495 42063864 6.020000e-80 309.0
6 TraesCS3B01G098400 chr3D 84.053 301 22 6 4269 4543 42086854 42087154 3.670000e-67 267.0
7 TraesCS3B01G098400 chr3D 76.282 468 78 26 1803 2249 42085191 42085646 1.040000e-52 219.0
8 TraesCS3B01G098400 chr3A 91.673 2822 159 32 645 3408 53573809 53571006 0.000000e+00 3840.0
9 TraesCS3B01G098400 chr3A 90.769 2730 124 54 3500 6172 53571010 53568352 0.000000e+00 3528.0
10 TraesCS3B01G098400 chr3A 81.201 383 56 8 4 380 53574353 53573981 1.680000e-75 294.0
11 TraesCS3B01G098400 chr3A 77.056 462 77 24 1803 2249 53571843 53571396 8.010000e-59 239.0
12 TraesCS3B01G098400 chr4D 83.191 351 41 14 1726 2063 49848116 49847771 7.780000e-79 305.0
13 TraesCS3B01G098400 chr6A 81.791 335 46 11 1741 2063 606415588 606415257 3.670000e-67 267.0
14 TraesCS3B01G098400 chr6A 85.787 197 23 4 1871 2063 60147241 60147436 2.920000e-48 204.0
15 TraesCS3B01G098400 chr7A 85.859 198 21 5 1871 2063 726115171 726114976 2.920000e-48 204.0
16 TraesCS3B01G098400 chr7A 94.444 36 2 0 597 632 512339518 512339553 8.650000e-04 56.5
17 TraesCS3B01G098400 chr2D 91.358 81 6 1 209 288 568879168 568879248 6.550000e-20 110.0
18 TraesCS3B01G098400 chrUn 100.000 52 0 0 386 437 331682625 331682574 5.100000e-16 97.1
19 TraesCS3B01G098400 chrUn 100.000 52 0 0 386 437 440190014 440189963 5.100000e-16 97.1
20 TraesCS3B01G098400 chr7D 100.000 52 0 0 386 437 484627580 484627529 5.100000e-16 97.1
21 TraesCS3B01G098400 chr6D 100.000 52 0 0 386 437 332190641 332190590 5.100000e-16 97.1
22 TraesCS3B01G098400 chr5D 100.000 52 0 0 386 437 240136440 240136389 5.100000e-16 97.1
23 TraesCS3B01G098400 chr1D 100.000 52 0 0 386 437 19956769 19956718 5.100000e-16 97.1
24 TraesCS3B01G098400 chr1D 100.000 52 0 0 386 437 254496741 254496690 5.100000e-16 97.1
25 TraesCS3B01G098400 chr1D 100.000 52 0 0 386 437 483915868 483915919 5.100000e-16 97.1
26 TraesCS3B01G098400 chr1A 100.000 52 0 0 386 437 112777299 112777350 5.100000e-16 97.1
27 TraesCS3B01G098400 chr1A 97.143 35 1 0 602 636 104438573 104438607 6.690000e-05 60.2
28 TraesCS3B01G098400 chr5A 100.000 29 0 0 603 631 458656963 458656935 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G098400 chr3B 65559706 65565885 6179 True 11413.00 11413 100.00000 1 6180 1 chr3B.!!$R1 6179
1 TraesCS3B01G098400 chr3D 42083175 42088728 5553 False 1539.80 4364 87.66580 646 6180 5 chr3D.!!$F2 5534
2 TraesCS3B01G098400 chr3A 53568352 53574353 6001 True 1975.25 3840 85.17475 4 6172 4 chr3A.!!$R1 6168

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.040646 TGGGTATGAGGACGACCACT 59.959 55.000 6.71 0.00 38.94 4.00 F
595 604 0.181350 CATCTGCCTGTTACTCCCCC 59.819 60.000 0.00 0.00 0.00 5.40 F
603 612 0.250553 TGTTACTCCCCCAGCAAACG 60.251 55.000 0.00 0.00 0.00 3.60 F
2328 2477 0.036022 GCCACACAAGGAGAAGAGCT 59.964 55.000 0.00 0.00 0.00 4.09 F
2578 2733 0.607489 AGGATTGCTGTGACAGTGCC 60.607 55.000 14.82 10.19 33.43 5.01 F
3452 3614 1.133482 TCTCCTGAGGATGGCGATACA 60.133 52.381 0.00 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1352 1413 0.103208 AGATGCGTAAGGAAGGAGCG 59.897 55.0 0.00 0.0 45.01 5.03 R
2224 2373 0.256752 TGGCCTGGACATCATTCTGG 59.743 55.0 3.32 0.0 0.00 3.86 R
2464 2619 0.319555 TTGACGCCTTCTCTTCCACG 60.320 55.0 0.00 0.0 0.00 4.94 R
3287 3449 0.755079 AGACAGCAAGCTGACACTGA 59.245 50.0 27.17 0.0 46.30 3.41 R
4538 4825 0.035056 TAAGCTGAGAAAGGGCAGGC 60.035 55.0 0.00 0.0 32.83 4.85 R
5355 5658 0.034863 TTGATTTGAGCCGTACCCCC 60.035 55.0 0.00 0.0 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.509336 CGAGGCCGACACATCCAC 60.509 66.667 0.00 0.00 38.22 4.02
23 24 2.261671 GCCGACACATCCACGTCT 59.738 61.111 0.00 0.00 0.00 4.18
26 27 0.173481 CCGACACATCCACGTCTGAT 59.827 55.000 0.00 0.00 0.00 2.90
28 29 1.002366 GACACATCCACGTCTGATGC 58.998 55.000 19.51 5.22 42.68 3.91
29 30 0.391661 ACACATCCACGTCTGATGCC 60.392 55.000 19.51 0.00 42.68 4.40
30 31 0.107993 CACATCCACGTCTGATGCCT 60.108 55.000 19.51 3.98 42.68 4.75
33 34 0.179100 ATCCACGTCTGATGCCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
40 41 1.134699 GTCTGATGCCTTCGACATGGA 60.135 52.381 0.00 0.00 32.03 3.41
41 42 1.137675 TCTGATGCCTTCGACATGGAG 59.862 52.381 0.00 0.00 0.00 3.86
67 68 0.461961 GGCGAGGAAGAGTAGCACAT 59.538 55.000 0.00 0.00 0.00 3.21
68 69 1.537135 GGCGAGGAAGAGTAGCACATC 60.537 57.143 0.00 0.00 0.00 3.06
71 72 1.751924 GAGGAAGAGTAGCACATCGGT 59.248 52.381 0.00 0.00 0.00 4.69
75 76 1.033574 AGAGTAGCACATCGGTAGCC 58.966 55.000 0.00 0.00 0.00 3.93
97 98 0.462047 CGTGGCTTGGGTATGAGGAC 60.462 60.000 0.00 0.00 0.00 3.85
99 100 0.616395 TGGCTTGGGTATGAGGACGA 60.616 55.000 0.00 0.00 0.00 4.20
104 105 0.040646 TGGGTATGAGGACGACCACT 59.959 55.000 6.71 0.00 38.94 4.00
116 117 2.561858 GACGACCACTACTCTTCCCTTT 59.438 50.000 0.00 0.00 0.00 3.11
120 121 2.176889 CCACTACTCTTCCCTTTCCGA 58.823 52.381 0.00 0.00 0.00 4.55
159 160 4.007644 TCACGGCCAGCTGGTGAG 62.008 66.667 32.81 24.65 35.89 3.51
173 174 1.069978 TGGTGAGCTTGACGAACATGA 59.930 47.619 0.00 0.00 0.00 3.07
178 179 3.067106 GAGCTTGACGAACATGAGGAAA 58.933 45.455 0.00 0.00 0.00 3.13
197 198 4.023193 GGAAAACATGTCATGAGAAACGGT 60.023 41.667 19.77 0.00 0.00 4.83
198 199 5.507315 GGAAAACATGTCATGAGAAACGGTT 60.507 40.000 19.77 0.00 0.00 4.44
284 286 9.685276 AGTGGAAATATGTCAAGAATGTAATGA 57.315 29.630 0.00 0.00 0.00 2.57
293 295 7.919690 TGTCAAGAATGTAATGAATTCGATCC 58.080 34.615 0.04 0.00 38.74 3.36
294 296 7.552330 TGTCAAGAATGTAATGAATTCGATCCA 59.448 33.333 0.04 0.00 38.74 3.41
295 297 8.397906 GTCAAGAATGTAATGAATTCGATCCAA 58.602 33.333 0.04 0.00 38.74 3.53
296 298 8.397906 TCAAGAATGTAATGAATTCGATCCAAC 58.602 33.333 0.04 0.00 38.74 3.77
306 308 7.737972 TGAATTCGATCCAACTTAAGTGAAA 57.262 32.000 9.34 0.00 0.00 2.69
315 317 7.038154 TCCAACTTAAGTGAAAATCAACCAG 57.962 36.000 9.34 0.00 0.00 4.00
321 323 7.558444 ACTTAAGTGAAAATCAACCAGGTTGTA 59.442 33.333 28.30 17.12 43.23 2.41
329 331 6.933514 AATCAACCAGGTTGTATGGAATTT 57.066 33.333 28.30 10.17 43.23 1.82
350 357 2.690497 TGTCCGTTCAATTTGGCTTTGA 59.310 40.909 0.00 0.00 0.00 2.69
354 361 4.568760 TCCGTTCAATTTGGCTTTGAAAAC 59.431 37.500 10.78 2.90 42.82 2.43
363 370 2.881513 TGGCTTTGAAAACGTATGCAGA 59.118 40.909 0.00 0.00 0.00 4.26
372 379 1.737838 ACGTATGCAGACATGGTTGG 58.262 50.000 12.67 0.00 37.04 3.77
376 383 2.812836 ATGCAGACATGGTTGGATGA 57.187 45.000 0.00 0.00 34.35 2.92
423 430 9.995594 ATATTAATCTAATATGCCCATTGGTGT 57.004 29.630 1.20 0.00 39.28 4.16
424 431 8.725606 ATTAATCTAATATGCCCATTGGTGTT 57.274 30.769 1.20 0.00 0.00 3.32
425 432 6.655078 AATCTAATATGCCCATTGGTGTTC 57.345 37.500 1.20 0.00 0.00 3.18
426 433 4.469657 TCTAATATGCCCATTGGTGTTCC 58.530 43.478 1.20 0.00 0.00 3.62
427 434 2.844654 ATATGCCCATTGGTGTTCCA 57.155 45.000 1.20 0.00 42.66 3.53
445 452 6.821665 GTGTTCCAAAAGTACCTGCATCTATA 59.178 38.462 0.00 0.00 0.00 1.31
456 463 3.857549 TGCATCTATATCCGCAGACTC 57.142 47.619 0.00 0.00 0.00 3.36
459 466 3.752731 CATCTATATCCGCAGACTCGTG 58.247 50.000 0.00 0.00 0.00 4.35
466 473 1.299850 CGCAGACTCGTGTGGACAA 60.300 57.895 0.00 0.00 0.00 3.18
475 482 1.623311 TCGTGTGGACAATCTGTGGAT 59.377 47.619 0.00 0.00 0.00 3.41
477 484 2.086869 GTGTGGACAATCTGTGGATGG 58.913 52.381 0.00 0.00 31.75 3.51
486 493 1.118965 TCTGTGGATGGACACCGTGT 61.119 55.000 3.13 3.13 40.62 4.49
495 502 2.386272 GACACCGTGTCCGTTTTGT 58.614 52.632 19.30 0.00 41.37 2.83
536 544 5.069781 GCCATAATAACCAAAACATGCCCTA 59.930 40.000 0.00 0.00 0.00 3.53
537 545 6.512297 CCATAATAACCAAAACATGCCCTAC 58.488 40.000 0.00 0.00 0.00 3.18
538 546 6.097554 CCATAATAACCAAAACATGCCCTACA 59.902 38.462 0.00 0.00 0.00 2.74
545 554 4.220382 CCAAAACATGCCCTACATTTCTCA 59.780 41.667 0.00 0.00 36.64 3.27
554 563 5.705441 TGCCCTACATTTCTCAACAACTTAG 59.295 40.000 0.00 0.00 0.00 2.18
562 571 0.669318 TCAACAACTTAGCCGCCTCG 60.669 55.000 0.00 0.00 0.00 4.63
569 578 2.835701 CTTAGCCGCCTCGCAACTCA 62.836 60.000 0.00 0.00 0.00 3.41
579 588 2.673368 CCTCGCAACTCAAGGTAACATC 59.327 50.000 0.00 0.00 41.41 3.06
584 593 3.679389 CAACTCAAGGTAACATCTGCCT 58.321 45.455 0.00 0.00 43.04 4.75
585 594 3.340814 ACTCAAGGTAACATCTGCCTG 57.659 47.619 0.00 0.00 39.67 4.85
594 603 0.912486 ACATCTGCCTGTTACTCCCC 59.088 55.000 0.00 0.00 0.00 4.81
595 604 0.181350 CATCTGCCTGTTACTCCCCC 59.819 60.000 0.00 0.00 0.00 5.40
596 605 0.253160 ATCTGCCTGTTACTCCCCCA 60.253 55.000 0.00 0.00 0.00 4.96
597 606 0.909610 TCTGCCTGTTACTCCCCCAG 60.910 60.000 0.00 0.00 0.00 4.45
598 607 2.272471 GCCTGTTACTCCCCCAGC 59.728 66.667 0.00 0.00 0.00 4.85
599 608 2.602676 GCCTGTTACTCCCCCAGCA 61.603 63.158 0.00 0.00 0.00 4.41
600 609 2.074967 CCTGTTACTCCCCCAGCAA 58.925 57.895 0.00 0.00 0.00 3.91
601 610 0.404040 CCTGTTACTCCCCCAGCAAA 59.596 55.000 0.00 0.00 0.00 3.68
602 611 1.534729 CTGTTACTCCCCCAGCAAAC 58.465 55.000 0.00 0.00 0.00 2.93
603 612 0.250553 TGTTACTCCCCCAGCAAACG 60.251 55.000 0.00 0.00 0.00 3.60
604 613 1.302993 TTACTCCCCCAGCAAACGC 60.303 57.895 0.00 0.00 0.00 4.84
605 614 1.774894 TTACTCCCCCAGCAAACGCT 61.775 55.000 0.00 0.00 41.67 5.07
606 615 2.180159 TACTCCCCCAGCAAACGCTC 62.180 60.000 0.00 0.00 37.77 5.03
607 616 3.249189 TCCCCCAGCAAACGCTCT 61.249 61.111 0.00 0.00 37.77 4.09
608 617 2.282462 CCCCCAGCAAACGCTCTT 60.282 61.111 0.00 0.00 37.77 2.85
609 618 1.002624 CCCCCAGCAAACGCTCTTA 60.003 57.895 0.00 0.00 37.77 2.10
610 619 0.394352 CCCCCAGCAAACGCTCTTAT 60.394 55.000 0.00 0.00 37.77 1.73
611 620 1.134220 CCCCCAGCAAACGCTCTTATA 60.134 52.381 0.00 0.00 37.77 0.98
612 621 2.487265 CCCCCAGCAAACGCTCTTATAT 60.487 50.000 0.00 0.00 37.77 0.86
613 622 3.214328 CCCCAGCAAACGCTCTTATATT 58.786 45.455 0.00 0.00 37.77 1.28
614 623 3.632145 CCCCAGCAAACGCTCTTATATTT 59.368 43.478 0.00 0.00 37.77 1.40
615 624 4.261197 CCCCAGCAAACGCTCTTATATTTC 60.261 45.833 0.00 0.00 37.77 2.17
616 625 4.576463 CCCAGCAAACGCTCTTATATTTCT 59.424 41.667 0.00 0.00 37.77 2.52
617 626 5.066505 CCCAGCAAACGCTCTTATATTTCTT 59.933 40.000 0.00 0.00 37.77 2.52
618 627 6.404734 CCCAGCAAACGCTCTTATATTTCTTT 60.405 38.462 0.00 0.00 37.77 2.52
619 628 7.201696 CCCAGCAAACGCTCTTATATTTCTTTA 60.202 37.037 0.00 0.00 37.77 1.85
620 629 7.640240 CCAGCAAACGCTCTTATATTTCTTTAC 59.360 37.037 0.00 0.00 37.77 2.01
621 630 8.175069 CAGCAAACGCTCTTATATTTCTTTACA 58.825 33.333 0.00 0.00 37.77 2.41
622 631 8.391106 AGCAAACGCTCTTATATTTCTTTACAG 58.609 33.333 0.00 0.00 33.18 2.74
623 632 8.388103 GCAAACGCTCTTATATTTCTTTACAGA 58.612 33.333 0.00 0.00 0.00 3.41
627 636 9.817809 ACGCTCTTATATTTCTTTACAGAATGA 57.182 29.630 0.00 0.00 38.89 2.57
635 644 7.923414 ATTTCTTTACAGAATGAGTACACCC 57.077 36.000 0.00 0.00 38.89 4.61
636 645 6.428083 TTCTTTACAGAATGAGTACACCCA 57.572 37.500 0.00 0.00 39.69 4.51
637 646 6.620877 TCTTTACAGAATGAGTACACCCAT 57.379 37.500 0.00 0.00 39.69 4.00
642 651 8.777578 TTACAGAATGAGTACACCCATATAGT 57.222 34.615 0.00 0.00 39.69 2.12
643 652 9.871175 TTACAGAATGAGTACACCCATATAGTA 57.129 33.333 0.00 0.00 39.69 1.82
656 665 5.949952 ACCCATATAGTAGTATCATCGCACA 59.050 40.000 0.00 0.00 0.00 4.57
673 682 3.179048 GCACATTCGCTAAATTTCACCC 58.821 45.455 0.00 0.00 0.00 4.61
674 683 3.119495 GCACATTCGCTAAATTTCACCCT 60.119 43.478 0.00 0.00 0.00 4.34
705 714 2.555757 GCTTTCATGCAGGAACAAGAGT 59.444 45.455 14.30 0.00 0.00 3.24
706 715 3.611057 GCTTTCATGCAGGAACAAGAGTG 60.611 47.826 14.30 0.07 0.00 3.51
717 726 6.385033 CAGGAACAAGAGTGGAAATTTGATC 58.615 40.000 0.00 0.00 0.00 2.92
723 732 6.094048 ACAAGAGTGGAAATTTGATCATACGG 59.906 38.462 0.00 0.00 0.00 4.02
751 767 8.848474 AATCCTCTAAAATCAGAAAGAAACGA 57.152 30.769 0.00 0.00 0.00 3.85
830 847 4.879104 TTACCGTTCAAGCTTCGAAAAA 57.121 36.364 7.54 2.04 0.00 1.94
974 1015 3.237741 CCCTCCCTCTCCCATCGC 61.238 72.222 0.00 0.00 0.00 4.58
1231 1284 3.203412 CTCGACGTCTCCCCCGAG 61.203 72.222 14.70 10.72 41.71 4.63
1352 1413 1.032114 CCCCGCTGTTTCTTGATCCC 61.032 60.000 0.00 0.00 0.00 3.85
1353 1414 1.369091 CCCGCTGTTTCTTGATCCCG 61.369 60.000 0.00 0.00 0.00 5.14
1357 1418 1.373570 CTGTTTCTTGATCCCGCTCC 58.626 55.000 0.00 0.00 0.00 4.70
1359 1420 1.351017 TGTTTCTTGATCCCGCTCCTT 59.649 47.619 0.00 0.00 0.00 3.36
1364 1425 1.762957 CTTGATCCCGCTCCTTCCTTA 59.237 52.381 0.00 0.00 0.00 2.69
1368 1429 2.577059 CCGCTCCTTCCTTACGCA 59.423 61.111 0.00 0.00 0.00 5.24
1411 1550 0.598680 CCATCTCATCCCGCTTCGTC 60.599 60.000 0.00 0.00 0.00 4.20
1518 1657 1.474077 CAGATGGCCAACAAAGGTAGC 59.526 52.381 10.96 0.00 0.00 3.58
1519 1658 1.075374 AGATGGCCAACAAAGGTAGCA 59.925 47.619 10.96 0.00 0.00 3.49
1520 1659 1.474077 GATGGCCAACAAAGGTAGCAG 59.526 52.381 10.96 0.00 0.00 4.24
1545 1684 1.703513 ACCCACCCTCTTACTTGGTTC 59.296 52.381 0.00 0.00 0.00 3.62
1552 1691 1.560146 CTCTTACTTGGTTCCCCTCCC 59.440 57.143 0.00 0.00 0.00 4.30
1602 1741 2.710096 TCATTCCCCATTTCCTCGAC 57.290 50.000 0.00 0.00 0.00 4.20
1603 1742 1.211949 TCATTCCCCATTTCCTCGACC 59.788 52.381 0.00 0.00 0.00 4.79
1622 1761 4.062991 GACCGTGTTTTACAGGTTCAGAT 58.937 43.478 0.00 0.00 36.68 2.90
1633 1772 3.449018 ACAGGTTCAGATATCTCAAGCGT 59.551 43.478 12.12 10.43 0.00 5.07
1672 1811 2.785357 AACAAGGTTCCCATCCCAAA 57.215 45.000 0.00 0.00 0.00 3.28
1715 1854 1.211212 TCTGGGTTGGCTGATGAGATG 59.789 52.381 0.00 0.00 0.00 2.90
1721 1860 0.693430 TGGCTGATGAGATGCCTCCT 60.693 55.000 0.00 0.00 46.23 3.69
1726 1865 0.835941 GATGAGATGCCTCCTGTGGT 59.164 55.000 0.00 0.00 38.66 4.16
1783 1925 2.281484 GCCGCCTGTTGTGAAGGA 60.281 61.111 0.00 0.00 36.91 3.36
1788 1930 1.881925 CGCCTGTTGTGAAGGATGGAA 60.882 52.381 0.00 0.00 36.91 3.53
1834 1976 4.770010 TGTCAAAGAAGAAACCAAGGTTGT 59.230 37.500 5.06 0.00 38.47 3.32
1835 1977 5.105917 TGTCAAAGAAGAAACCAAGGTTGTC 60.106 40.000 5.06 5.79 38.47 3.18
1836 1978 4.095782 TCAAAGAAGAAACCAAGGTTGTCG 59.904 41.667 5.06 0.00 38.47 4.35
1837 1979 3.277142 AGAAGAAACCAAGGTTGTCGT 57.723 42.857 5.06 4.20 38.47 4.34
1885 2028 4.430908 CCCGTGAGTTTCTTGATACTACC 58.569 47.826 0.00 0.00 0.00 3.18
1911 2056 6.007677 CGTCTCTTGTTTGCGTCTAAATTAC 58.992 40.000 0.00 0.00 0.00 1.89
1921 2066 1.940613 GTCTAAATTACGCAGGGCTGG 59.059 52.381 0.00 0.00 0.00 4.85
1941 2086 3.694072 TGGTTACATTTCCTGCATAGCAC 59.306 43.478 0.00 0.00 33.79 4.40
2110 2259 6.203808 TGTTATCTTACTGCGCTTCTCTTA 57.796 37.500 9.73 0.00 0.00 2.10
2139 2288 5.068591 TCGGCTTTCTGATAGTGTGCTATTA 59.931 40.000 0.00 0.00 37.99 0.98
2188 2337 0.402121 AAGGAGACAGGGCCAAGTTC 59.598 55.000 6.18 4.78 0.00 3.01
2200 2349 3.416156 GGCCAAGTTCAGAAGATTGTCT 58.584 45.455 0.00 0.00 0.00 3.41
2215 2364 9.129532 AGAAGATTGTCTGAAGAGAAACAAATT 57.870 29.630 0.00 0.00 35.46 1.82
2224 2373 8.993121 TCTGAAGAGAAACAAATTACATCTGAC 58.007 33.333 0.00 0.00 0.00 3.51
2225 2374 8.099364 TGAAGAGAAACAAATTACATCTGACC 57.901 34.615 0.00 0.00 0.00 4.02
2254 2403 1.222936 CCAGGCCAGTGGACAGATC 59.777 63.158 19.84 0.00 40.44 2.75
2268 2417 1.922369 AGATCCAGCCTGCCACTGT 60.922 57.895 0.00 0.00 33.09 3.55
2286 2435 4.629200 CACTGTAGAAGTTTCTCTGGATGC 59.371 45.833 0.00 0.00 36.83 3.91
2328 2477 0.036022 GCCACACAAGGAGAAGAGCT 59.964 55.000 0.00 0.00 0.00 4.09
2367 2516 2.550830 TTGTCTTCAGAGAAGGGTGC 57.449 50.000 6.89 0.00 32.66 5.01
2464 2619 2.878406 TGTAGCTGAAGTTGAAAGCACC 59.122 45.455 0.00 0.00 39.47 5.01
2479 2634 1.738099 CACCGTGGAAGAGAAGGCG 60.738 63.158 0.00 0.00 0.00 5.52
2524 2679 4.199002 TCCTATGGATTCTGTAGAGCCA 57.801 45.455 7.66 7.66 35.69 4.75
2577 2732 1.198637 GAAGGATTGCTGTGACAGTGC 59.801 52.381 14.82 1.81 33.43 4.40
2578 2733 0.607489 AGGATTGCTGTGACAGTGCC 60.607 55.000 14.82 10.19 33.43 5.01
2700 2855 8.630054 TGTTAACTGCATTTCCTGTATAGTTT 57.370 30.769 7.22 0.00 32.16 2.66
2741 2896 1.768275 TCTTCTGCCTGTTTCAGTCCA 59.232 47.619 0.00 0.00 33.48 4.02
2791 2946 2.771943 TCCCCATCGAAGCTCATTTAGT 59.228 45.455 0.00 0.00 0.00 2.24
2861 3016 7.035004 TGCTGTATTTTGCTGTTTAATGATCC 58.965 34.615 0.00 0.00 0.00 3.36
3153 3315 4.127171 GCTTCAGTCTGTTGTTCCAGTTA 58.873 43.478 0.00 0.00 34.02 2.24
3259 3421 3.560025 CCAGACAAGGGTGAGCTAACATT 60.560 47.826 2.93 0.00 0.00 2.71
3260 3422 3.438087 CAGACAAGGGTGAGCTAACATTG 59.562 47.826 14.09 14.09 0.00 2.82
3287 3449 1.885049 ATGATGTCCTAGCTGGTGGT 58.115 50.000 0.00 0.00 37.07 4.16
3311 3473 1.269988 TGTCAGCTTGCTGTCTCAGAC 60.270 52.381 20.20 11.51 32.44 3.51
3403 3565 8.049117 AGATGAGAATTCTGTACTTAATGGCAA 58.951 33.333 14.00 0.00 0.00 4.52
3404 3566 7.994425 TGAGAATTCTGTACTTAATGGCAAA 57.006 32.000 14.00 0.00 0.00 3.68
3405 3567 8.044060 TGAGAATTCTGTACTTAATGGCAAAG 57.956 34.615 14.00 0.00 0.00 2.77
3406 3568 7.882791 TGAGAATTCTGTACTTAATGGCAAAGA 59.117 33.333 14.00 0.00 0.00 2.52
3407 3569 8.814038 AGAATTCTGTACTTAATGGCAAAGAT 57.186 30.769 7.30 0.00 0.00 2.40
3408 3570 9.905713 AGAATTCTGTACTTAATGGCAAAGATA 57.094 29.630 7.30 0.00 0.00 1.98
3411 3573 8.677148 TTCTGTACTTAATGGCAAAGATATCC 57.323 34.615 5.95 0.00 0.00 2.59
3412 3574 7.801104 TCTGTACTTAATGGCAAAGATATCCA 58.199 34.615 5.95 0.00 0.00 3.41
3413 3575 7.933577 TCTGTACTTAATGGCAAAGATATCCAG 59.066 37.037 5.95 0.70 32.78 3.86
3414 3576 7.573710 TGTACTTAATGGCAAAGATATCCAGT 58.426 34.615 5.95 0.00 32.78 4.00
3415 3577 7.715249 TGTACTTAATGGCAAAGATATCCAGTC 59.285 37.037 5.95 0.00 32.78 3.51
3416 3578 6.904626 ACTTAATGGCAAAGATATCCAGTCT 58.095 36.000 5.95 0.00 32.78 3.24
3417 3579 6.769822 ACTTAATGGCAAAGATATCCAGTCTG 59.230 38.462 5.95 0.00 32.78 3.51
3418 3580 2.923121 TGGCAAAGATATCCAGTCTGC 58.077 47.619 0.00 1.75 0.00 4.26
3419 3581 2.507058 TGGCAAAGATATCCAGTCTGCT 59.493 45.455 0.00 0.00 0.00 4.24
3420 3582 2.877168 GGCAAAGATATCCAGTCTGCTG 59.123 50.000 0.00 0.00 42.22 4.41
3421 3583 3.539604 GCAAAGATATCCAGTCTGCTGT 58.460 45.455 0.00 0.00 41.02 4.40
3422 3584 3.559242 GCAAAGATATCCAGTCTGCTGTC 59.441 47.826 0.00 0.00 41.02 3.51
3423 3585 4.682859 GCAAAGATATCCAGTCTGCTGTCT 60.683 45.833 0.00 0.00 41.02 3.41
3424 3586 4.935352 AAGATATCCAGTCTGCTGTCTC 57.065 45.455 0.00 0.00 41.02 3.36
3425 3587 4.183223 AGATATCCAGTCTGCTGTCTCT 57.817 45.455 0.00 0.00 41.02 3.10
3426 3588 3.890756 AGATATCCAGTCTGCTGTCTCTG 59.109 47.826 0.00 0.00 41.02 3.35
3427 3589 2.228545 ATCCAGTCTGCTGTCTCTGA 57.771 50.000 0.00 3.29 41.02 3.27
3428 3590 2.001076 TCCAGTCTGCTGTCTCTGAA 57.999 50.000 0.00 0.00 41.02 3.02
3429 3591 1.891811 TCCAGTCTGCTGTCTCTGAAG 59.108 52.381 0.00 0.00 41.02 3.02
3430 3592 1.617850 CCAGTCTGCTGTCTCTGAAGT 59.382 52.381 0.00 0.00 41.02 3.01
3431 3593 2.822561 CCAGTCTGCTGTCTCTGAAGTA 59.177 50.000 0.00 0.00 41.02 2.24
3432 3594 3.446873 CCAGTCTGCTGTCTCTGAAGTAT 59.553 47.826 0.00 0.00 41.02 2.12
3433 3595 4.439974 CCAGTCTGCTGTCTCTGAAGTATC 60.440 50.000 0.00 0.00 41.02 2.24
3434 3596 4.398988 CAGTCTGCTGTCTCTGAAGTATCT 59.601 45.833 0.00 0.00 37.92 1.98
3435 3597 4.640201 AGTCTGCTGTCTCTGAAGTATCTC 59.360 45.833 0.00 0.00 0.00 2.75
3436 3598 3.951037 TCTGCTGTCTCTGAAGTATCTCC 59.049 47.826 0.00 0.00 0.00 3.71
3437 3599 3.953612 CTGCTGTCTCTGAAGTATCTCCT 59.046 47.826 0.00 0.00 0.00 3.69
3438 3600 3.698539 TGCTGTCTCTGAAGTATCTCCTG 59.301 47.826 0.00 0.00 0.00 3.86
3439 3601 3.951037 GCTGTCTCTGAAGTATCTCCTGA 59.049 47.826 0.00 0.00 0.00 3.86
3440 3602 4.036734 GCTGTCTCTGAAGTATCTCCTGAG 59.963 50.000 0.00 0.00 0.00 3.35
3441 3603 4.531854 TGTCTCTGAAGTATCTCCTGAGG 58.468 47.826 0.00 0.00 0.00 3.86
3442 3604 4.228438 TGTCTCTGAAGTATCTCCTGAGGA 59.772 45.833 0.00 0.00 0.00 3.71
3443 3605 5.103728 TGTCTCTGAAGTATCTCCTGAGGAT 60.104 44.000 0.00 0.00 0.00 3.24
3444 3606 5.241506 GTCTCTGAAGTATCTCCTGAGGATG 59.758 48.000 0.00 0.00 0.00 3.51
3445 3607 4.478203 TCTGAAGTATCTCCTGAGGATGG 58.522 47.826 0.00 0.00 0.00 3.51
3446 3608 2.968574 TGAAGTATCTCCTGAGGATGGC 59.031 50.000 0.00 0.00 0.00 4.40
3447 3609 1.626686 AGTATCTCCTGAGGATGGCG 58.373 55.000 0.00 0.00 0.00 5.69
3448 3610 1.145945 AGTATCTCCTGAGGATGGCGA 59.854 52.381 0.00 0.00 0.00 5.54
3449 3611 2.175202 GTATCTCCTGAGGATGGCGAT 58.825 52.381 0.00 3.81 34.01 4.58
3450 3612 2.612285 ATCTCCTGAGGATGGCGATA 57.388 50.000 0.00 0.00 28.39 2.92
3451 3613 1.621992 TCTCCTGAGGATGGCGATAC 58.378 55.000 0.00 0.00 0.00 2.24
3452 3614 1.133482 TCTCCTGAGGATGGCGATACA 60.133 52.381 0.00 0.00 0.00 2.29
3453 3615 1.271934 CTCCTGAGGATGGCGATACAG 59.728 57.143 0.00 0.00 0.00 2.74
3454 3616 1.133482 TCCTGAGGATGGCGATACAGA 60.133 52.381 0.00 0.00 0.00 3.41
3455 3617 1.898472 CCTGAGGATGGCGATACAGAT 59.102 52.381 0.00 0.00 0.00 2.90
3456 3618 2.353505 CCTGAGGATGGCGATACAGATG 60.354 54.545 0.00 0.00 0.00 2.90
3457 3619 2.560105 CTGAGGATGGCGATACAGATGA 59.440 50.000 0.00 0.00 0.00 2.92
3458 3620 2.965147 TGAGGATGGCGATACAGATGAA 59.035 45.455 0.00 0.00 0.00 2.57
3459 3621 3.387699 TGAGGATGGCGATACAGATGAAA 59.612 43.478 0.00 0.00 0.00 2.69
3460 3622 4.040829 TGAGGATGGCGATACAGATGAAAT 59.959 41.667 0.00 0.00 0.00 2.17
3461 3623 4.321718 AGGATGGCGATACAGATGAAATG 58.678 43.478 0.00 0.00 0.00 2.32
3462 3624 4.040829 AGGATGGCGATACAGATGAAATGA 59.959 41.667 0.00 0.00 0.00 2.57
3463 3625 4.756642 GGATGGCGATACAGATGAAATGAA 59.243 41.667 0.00 0.00 0.00 2.57
3464 3626 5.239306 GGATGGCGATACAGATGAAATGAAA 59.761 40.000 0.00 0.00 0.00 2.69
3465 3627 5.739752 TGGCGATACAGATGAAATGAAAG 57.260 39.130 0.00 0.00 0.00 2.62
3466 3628 5.427378 TGGCGATACAGATGAAATGAAAGA 58.573 37.500 0.00 0.00 0.00 2.52
3467 3629 5.525012 TGGCGATACAGATGAAATGAAAGAG 59.475 40.000 0.00 0.00 0.00 2.85
3468 3630 5.049818 GGCGATACAGATGAAATGAAAGAGG 60.050 44.000 0.00 0.00 0.00 3.69
3469 3631 5.525378 GCGATACAGATGAAATGAAAGAGGT 59.475 40.000 0.00 0.00 0.00 3.85
3470 3632 6.701841 GCGATACAGATGAAATGAAAGAGGTA 59.298 38.462 0.00 0.00 0.00 3.08
3471 3633 7.224753 GCGATACAGATGAAATGAAAGAGGTAA 59.775 37.037 0.00 0.00 0.00 2.85
3472 3634 8.543774 CGATACAGATGAAATGAAAGAGGTAAC 58.456 37.037 0.00 0.00 0.00 2.50
3473 3635 9.383519 GATACAGATGAAATGAAAGAGGTAACA 57.616 33.333 0.00 0.00 41.41 2.41
3474 3636 7.678947 ACAGATGAAATGAAAGAGGTAACAG 57.321 36.000 0.00 0.00 41.41 3.16
3475 3637 7.453393 ACAGATGAAATGAAAGAGGTAACAGA 58.547 34.615 0.00 0.00 41.41 3.41
3476 3638 7.605691 ACAGATGAAATGAAAGAGGTAACAGAG 59.394 37.037 0.00 0.00 41.41 3.35
3477 3639 7.821359 CAGATGAAATGAAAGAGGTAACAGAGA 59.179 37.037 0.00 0.00 41.41 3.10
3478 3640 8.378565 AGATGAAATGAAAGAGGTAACAGAGAA 58.621 33.333 0.00 0.00 41.41 2.87
3479 3641 8.924511 ATGAAATGAAAGAGGTAACAGAGAAA 57.075 30.769 0.00 0.00 41.41 2.52
3480 3642 8.154649 TGAAATGAAAGAGGTAACAGAGAAAC 57.845 34.615 0.00 0.00 41.41 2.78
3481 3643 7.228706 TGAAATGAAAGAGGTAACAGAGAAACC 59.771 37.037 0.00 0.00 41.41 3.27
3482 3644 5.623956 TGAAAGAGGTAACAGAGAAACCA 57.376 39.130 0.00 0.00 41.41 3.67
3483 3645 5.611374 TGAAAGAGGTAACAGAGAAACCAG 58.389 41.667 0.00 0.00 41.41 4.00
3484 3646 3.686916 AGAGGTAACAGAGAAACCAGC 57.313 47.619 0.00 0.00 41.41 4.85
3485 3647 2.972713 AGAGGTAACAGAGAAACCAGCA 59.027 45.455 0.00 0.00 41.41 4.41
3486 3648 3.584848 AGAGGTAACAGAGAAACCAGCAT 59.415 43.478 0.00 0.00 41.41 3.79
3487 3649 4.042187 AGAGGTAACAGAGAAACCAGCATT 59.958 41.667 0.00 0.00 41.41 3.56
3488 3650 4.074970 AGGTAACAGAGAAACCAGCATTG 58.925 43.478 0.00 0.00 41.41 2.82
3489 3651 4.072131 GGTAACAGAGAAACCAGCATTGA 58.928 43.478 0.00 0.00 33.28 2.57
3490 3652 4.083271 GGTAACAGAGAAACCAGCATTGAC 60.083 45.833 0.00 0.00 33.28 3.18
3491 3653 3.498774 ACAGAGAAACCAGCATTGACT 57.501 42.857 0.00 0.00 0.00 3.41
3492 3654 3.144506 ACAGAGAAACCAGCATTGACTG 58.855 45.455 0.00 0.00 37.42 3.51
3522 3780 5.021033 AGATGAGTCAAGTGGATTAGCAG 57.979 43.478 0.00 0.00 0.00 4.24
4057 4315 2.094906 ACTGCAGCGTATTTCGTCTACA 60.095 45.455 15.27 0.00 42.13 2.74
4091 4349 4.757149 GCTTTTGAGTTCTCTAGGAAGCAA 59.243 41.667 16.45 0.00 38.41 3.91
4244 4502 6.798959 GTGATGAAGTTCTACACTTGCATTTC 59.201 38.462 18.53 0.00 46.53 2.17
4246 4504 6.942532 TGAAGTTCTACACTTGCATTTCTT 57.057 33.333 4.17 0.00 46.53 2.52
4250 4508 5.827797 AGTTCTACACTTGCATTTCTTTCCA 59.172 36.000 0.00 0.00 27.32 3.53
4393 4656 3.528597 TTAAACTTGGCCGCAGTTTTT 57.471 38.095 28.62 14.67 40.83 1.94
4538 4825 2.357009 GAGTGCAATGCCTGTAATCTGG 59.643 50.000 1.53 0.00 32.69 3.86
4558 4845 1.409381 GCCTGCCCTTTCTCAGCTTAT 60.409 52.381 0.00 0.00 0.00 1.73
4656 4943 8.526978 TGTGACTTGCAATATATTTGCCTTTTA 58.473 29.630 0.00 0.49 44.32 1.52
4657 4944 9.364989 GTGACTTGCAATATATTTGCCTTTTAA 57.635 29.630 0.00 6.32 44.32 1.52
4658 4945 9.935241 TGACTTGCAATATATTTGCCTTTTAAA 57.065 25.926 0.00 0.00 44.32 1.52
4823 5111 1.566298 ATTCCTGTGAGTGGCCTCCC 61.566 60.000 3.32 0.00 36.86 4.30
4824 5112 2.608988 CCTGTGAGTGGCCTCCCT 60.609 66.667 3.32 0.00 36.86 4.20
4833 5121 1.995626 TGGCCTCCCTCTACCTTGC 60.996 63.158 3.32 0.00 0.00 4.01
4858 5146 1.808411 GGTTTGCCATGAGAACTCGA 58.192 50.000 0.00 0.00 34.09 4.04
4859 5147 2.359900 GGTTTGCCATGAGAACTCGAT 58.640 47.619 0.00 0.00 34.09 3.59
4881 5169 4.060205 TGGAGTCGGTTTAACTAAGCAAC 58.940 43.478 0.00 0.00 33.83 4.17
5026 5314 2.690326 CCGACCGGTGATTGATTCC 58.310 57.895 14.63 0.00 0.00 3.01
5148 5438 2.147150 GAAGCTCTGTTGGTTCCACTC 58.853 52.381 0.00 0.00 38.18 3.51
5251 5543 1.667724 GAACATGCCAATCTGGTCTCG 59.332 52.381 0.00 0.00 40.46 4.04
5326 5629 2.681097 GCCCTCTTTGACTGGTGATACC 60.681 54.545 0.00 0.00 39.22 2.73
5338 5641 3.417101 TGGTGATACCGAATTGCACTTT 58.583 40.909 0.00 0.00 42.58 2.66
5401 5704 7.919091 CCATTCAATAAATCACAGGTTGATGAG 59.081 37.037 0.00 0.00 44.86 2.90
5426 5729 6.676990 TGACAGACAATCCTGAGCATATAT 57.323 37.500 0.00 0.00 37.59 0.86
5427 5730 6.461640 TGACAGACAATCCTGAGCATATATG 58.538 40.000 8.45 8.45 37.59 1.78
5435 5738 9.812347 ACAATCCTGAGCATATATGGATAAAAA 57.188 29.630 14.51 0.00 36.61 1.94
5479 5810 2.194271 GAACACACACGATAGCTAGCC 58.806 52.381 12.13 0.00 42.67 3.93
5490 5821 0.613853 TAGCTAGCCGGTGGTCTTGT 60.614 55.000 12.13 0.00 0.00 3.16
5496 5827 1.823169 GCCGGTGGTCTTGTGGTAGA 61.823 60.000 1.90 0.00 0.00 2.59
5737 6068 2.202797 CAGTCGCCCGACATGGAG 60.203 66.667 21.14 3.84 46.76 3.86
5738 6069 2.362503 AGTCGCCCGACATGGAGA 60.363 61.111 21.14 0.00 46.76 3.71
5739 6070 2.202756 GTCGCCCGACATGGAGAC 60.203 66.667 15.22 0.71 45.79 3.36
5740 6071 3.822192 TCGCCCGACATGGAGACG 61.822 66.667 0.00 0.00 42.00 4.18
5741 6072 3.822192 CGCCCGACATGGAGACGA 61.822 66.667 0.00 0.00 42.00 4.20
5777 6115 2.364317 CCGCCCCTCTCTCCTCAA 60.364 66.667 0.00 0.00 0.00 3.02
5778 6116 2.430610 CCGCCCCTCTCTCCTCAAG 61.431 68.421 0.00 0.00 0.00 3.02
5779 6117 1.380515 CGCCCCTCTCTCCTCAAGA 60.381 63.158 0.00 0.00 0.00 3.02
5780 6118 0.972983 CGCCCCTCTCTCCTCAAGAA 60.973 60.000 0.00 0.00 32.23 2.52
5781 6119 0.539518 GCCCCTCTCTCCTCAAGAAC 59.460 60.000 0.00 0.00 32.23 3.01
5782 6120 1.899438 GCCCCTCTCTCCTCAAGAACT 60.899 57.143 0.00 0.00 32.23 3.01
5783 6121 2.107366 CCCCTCTCTCCTCAAGAACTC 58.893 57.143 0.00 0.00 32.23 3.01
5784 6122 2.292192 CCCCTCTCTCCTCAAGAACTCT 60.292 54.545 0.00 0.00 32.23 3.24
5785 6123 2.760092 CCCTCTCTCCTCAAGAACTCTG 59.240 54.545 0.00 0.00 32.23 3.35
5786 6124 3.430453 CCTCTCTCCTCAAGAACTCTGT 58.570 50.000 0.00 0.00 32.23 3.41
5788 6126 4.335416 CTCTCTCCTCAAGAACTCTGTCT 58.665 47.826 0.00 0.00 32.23 3.41
5791 6129 5.708230 TCTCTCCTCAAGAACTCTGTCTTAC 59.292 44.000 0.00 0.00 35.63 2.34
5792 6130 5.386060 TCTCCTCAAGAACTCTGTCTTACA 58.614 41.667 0.00 0.00 35.63 2.41
5980 6319 1.303309 ATTGTCATTAGCAGGCGAGC 58.697 50.000 0.00 0.00 0.00 5.03
6053 6395 0.695347 CTTCTGAGACCCCAAAGGCT 59.305 55.000 0.00 0.00 40.58 4.58
6054 6396 1.909302 CTTCTGAGACCCCAAAGGCTA 59.091 52.381 0.00 0.00 40.58 3.93
6055 6397 1.276622 TCTGAGACCCCAAAGGCTAC 58.723 55.000 0.00 0.00 40.58 3.58
6056 6398 0.253327 CTGAGACCCCAAAGGCTACC 59.747 60.000 0.00 0.00 40.58 3.18
6057 6399 0.474854 TGAGACCCCAAAGGCTACCA 60.475 55.000 0.00 0.00 40.58 3.25
6058 6400 0.035343 GAGACCCCAAAGGCTACCAC 60.035 60.000 0.00 0.00 40.58 4.16
6059 6401 0.475828 AGACCCCAAAGGCTACCACT 60.476 55.000 0.00 0.00 40.58 4.00
6078 6420 4.098654 CCACTACATCTTGTGAGACCTAGG 59.901 50.000 7.41 7.41 36.38 3.02
6126 6471 5.657745 AGATCACTTGTGTCTCTCATCATCT 59.342 40.000 0.00 0.00 0.00 2.90
6133 6478 3.622163 GTGTCTCTCATCATCTTGCCTTG 59.378 47.826 0.00 0.00 0.00 3.61
6134 6479 2.613133 GTCTCTCATCATCTTGCCTTGC 59.387 50.000 0.00 0.00 0.00 4.01
6135 6480 1.598132 CTCTCATCATCTTGCCTTGCG 59.402 52.381 0.00 0.00 0.00 4.85
6136 6481 1.065926 TCTCATCATCTTGCCTTGCGT 60.066 47.619 0.00 0.00 0.00 5.24
6137 6482 1.741706 CTCATCATCTTGCCTTGCGTT 59.258 47.619 0.00 0.00 0.00 4.84
6167 6515 2.771089 ACTACACCAGCTGAACATGTG 58.229 47.619 17.39 16.39 0.00 3.21
6172 6520 2.418976 CACCAGCTGAACATGTGATCTG 59.581 50.000 17.39 4.98 0.00 2.90
6174 6522 2.418976 CCAGCTGAACATGTGATCTGTG 59.581 50.000 17.39 0.63 0.00 3.66
6176 6524 3.501062 CAGCTGAACATGTGATCTGTGTT 59.499 43.478 8.42 9.60 38.66 3.32
6177 6525 4.023450 CAGCTGAACATGTGATCTGTGTTT 60.023 41.667 8.42 0.00 36.30 2.83
6178 6526 4.214971 AGCTGAACATGTGATCTGTGTTTC 59.785 41.667 0.00 0.00 36.30 2.78
6179 6527 4.614535 GCTGAACATGTGATCTGTGTTTCC 60.615 45.833 0.00 3.01 36.30 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.451150 TGGATGTGTCGGCCTCGC 62.451 66.667 0.00 0.83 36.13 5.03
2 3 2.509336 GTGGATGTGTCGGCCTCG 60.509 66.667 0.00 0.00 37.82 4.63
6 7 2.094659 CAGACGTGGATGTGTCGGC 61.095 63.158 0.00 0.00 40.05 5.54
10 11 0.391661 GGCATCAGACGTGGATGTGT 60.392 55.000 21.35 0.00 43.17 3.72
19 20 4.889427 TGTCGAAGGCATCAGACG 57.111 55.556 0.00 0.00 36.97 4.18
28 29 0.898320 AGTGTCCTCCATGTCGAAGG 59.102 55.000 0.00 0.00 0.00 3.46
29 30 1.404717 CCAGTGTCCTCCATGTCGAAG 60.405 57.143 0.00 0.00 0.00 3.79
30 31 0.608130 CCAGTGTCCTCCATGTCGAA 59.392 55.000 0.00 0.00 0.00 3.71
33 34 1.448540 CGCCAGTGTCCTCCATGTC 60.449 63.158 0.00 0.00 0.00 3.06
40 41 1.228894 TCTTCCTCGCCAGTGTCCT 60.229 57.895 0.00 0.00 0.00 3.85
41 42 1.216710 CTCTTCCTCGCCAGTGTCC 59.783 63.158 0.00 0.00 0.00 4.02
75 76 0.806102 CTCATACCCAAGCCACGACG 60.806 60.000 0.00 0.00 0.00 5.12
90 91 2.810870 AGAGTAGTGGTCGTCCTCAT 57.189 50.000 0.00 0.00 34.23 2.90
97 98 2.094130 GGAAAGGGAAGAGTAGTGGTCG 60.094 54.545 0.00 0.00 0.00 4.79
99 100 1.900486 CGGAAAGGGAAGAGTAGTGGT 59.100 52.381 0.00 0.00 0.00 4.16
104 105 2.205022 TCGTCGGAAAGGGAAGAGTA 57.795 50.000 0.00 0.00 0.00 2.59
116 117 3.496884 CCTGAAAATGAAACTTCGTCGGA 59.503 43.478 0.00 0.00 0.00 4.55
120 121 2.296190 GGCCCTGAAAATGAAACTTCGT 59.704 45.455 0.00 0.00 0.00 3.85
126 127 1.885887 CGTGAGGCCCTGAAAATGAAA 59.114 47.619 0.00 0.00 0.00 2.69
153 154 1.069978 TCATGTTCGTCAAGCTCACCA 59.930 47.619 0.00 0.00 0.00 4.17
159 160 3.003275 TGTTTTCCTCATGTTCGTCAAGC 59.997 43.478 0.00 0.00 0.00 4.01
173 174 4.216257 CCGTTTCTCATGACATGTTTTCCT 59.784 41.667 14.98 0.00 0.00 3.36
178 179 3.304659 GCAACCGTTTCTCATGACATGTT 60.305 43.478 14.98 0.00 0.00 2.71
207 208 3.056749 CCTAGTCTAAATAATCGCCGGCT 60.057 47.826 26.68 8.66 0.00 5.52
253 255 9.295825 ACATTCTTGACATATTTCCACTAAACA 57.704 29.630 0.00 0.00 0.00 2.83
271 273 8.400947 AGTTGGATCGAATTCATTACATTCTTG 58.599 33.333 6.22 0.00 0.00 3.02
273 275 8.511604 AAGTTGGATCGAATTCATTACATTCT 57.488 30.769 6.22 0.00 0.00 2.40
278 280 8.879759 TCACTTAAGTTGGATCGAATTCATTAC 58.120 33.333 5.07 0.00 0.00 1.89
280 282 7.921786 TCACTTAAGTTGGATCGAATTCATT 57.078 32.000 5.07 0.00 0.00 2.57
281 283 7.921786 TTCACTTAAGTTGGATCGAATTCAT 57.078 32.000 5.07 0.00 0.00 2.57
283 285 9.278734 GATTTTCACTTAAGTTGGATCGAATTC 57.721 33.333 5.07 0.00 0.00 2.17
284 286 8.792633 TGATTTTCACTTAAGTTGGATCGAATT 58.207 29.630 5.07 0.00 0.00 2.17
286 288 7.737972 TGATTTTCACTTAAGTTGGATCGAA 57.262 32.000 5.07 2.57 0.00 3.71
288 290 6.801862 GGTTGATTTTCACTTAAGTTGGATCG 59.198 38.462 5.07 0.00 0.00 3.69
289 291 7.657336 TGGTTGATTTTCACTTAAGTTGGATC 58.343 34.615 5.07 7.98 0.00 3.36
290 292 7.255942 CCTGGTTGATTTTCACTTAAGTTGGAT 60.256 37.037 5.07 0.00 0.00 3.41
291 293 6.040391 CCTGGTTGATTTTCACTTAAGTTGGA 59.960 38.462 5.07 0.00 0.00 3.53
292 294 6.183360 ACCTGGTTGATTTTCACTTAAGTTGG 60.183 38.462 5.07 0.00 0.00 3.77
293 295 6.805713 ACCTGGTTGATTTTCACTTAAGTTG 58.194 36.000 5.07 2.14 0.00 3.16
294 296 7.093509 ACAACCTGGTTGATTTTCACTTAAGTT 60.094 33.333 38.49 13.30 45.28 2.66
295 297 6.379988 ACAACCTGGTTGATTTTCACTTAAGT 59.620 34.615 38.49 13.90 45.28 2.24
296 298 6.805713 ACAACCTGGTTGATTTTCACTTAAG 58.194 36.000 38.49 13.24 45.28 1.85
306 308 6.269769 ACAAATTCCATACAACCTGGTTGATT 59.730 34.615 38.49 25.02 45.28 2.57
315 317 4.216687 TGAACGGACAAATTCCATACAACC 59.783 41.667 0.00 0.00 46.29 3.77
321 323 5.237048 CCAAATTGAACGGACAAATTCCAT 58.763 37.500 0.00 0.00 46.29 3.41
329 331 2.690497 TCAAAGCCAAATTGAACGGACA 59.310 40.909 0.00 0.00 34.04 4.02
343 350 3.234386 GTCTGCATACGTTTTCAAAGCC 58.766 45.455 0.00 0.00 0.00 4.35
350 357 3.057596 CCAACCATGTCTGCATACGTTTT 60.058 43.478 0.00 0.00 33.30 2.43
354 361 2.022764 TCCAACCATGTCTGCATACG 57.977 50.000 0.00 0.00 33.30 3.06
397 404 9.995594 ACACCAATGGGCATATTAGATTAATAT 57.004 29.630 3.55 0.00 38.44 1.28
398 405 9.821240 AACACCAATGGGCATATTAGATTAATA 57.179 29.630 3.55 0.00 37.90 0.98
399 406 8.725606 AACACCAATGGGCATATTAGATTAAT 57.274 30.769 3.55 0.00 37.90 1.40
400 407 7.232534 GGAACACCAATGGGCATATTAGATTAA 59.767 37.037 3.55 0.00 37.90 1.40
401 408 6.719370 GGAACACCAATGGGCATATTAGATTA 59.281 38.462 3.55 0.00 37.90 1.75
402 409 5.539955 GGAACACCAATGGGCATATTAGATT 59.460 40.000 3.55 0.00 37.90 2.40
403 410 5.079643 GGAACACCAATGGGCATATTAGAT 58.920 41.667 3.55 0.00 37.90 1.98
404 411 4.079500 TGGAACACCAATGGGCATATTAGA 60.080 41.667 3.55 0.00 37.90 2.10
405 412 4.214310 TGGAACACCAATGGGCATATTAG 58.786 43.478 3.55 0.00 37.90 1.73
406 413 4.256983 TGGAACACCAATGGGCATATTA 57.743 40.909 3.55 0.00 37.90 0.98
407 414 3.113191 TGGAACACCAATGGGCATATT 57.887 42.857 3.55 0.00 37.90 1.28
408 415 2.844654 TGGAACACCAATGGGCATAT 57.155 45.000 3.55 0.00 37.90 1.78
409 416 2.612285 TTGGAACACCAATGGGCATA 57.388 45.000 3.55 0.00 39.29 3.14
410 417 1.727062 TTTGGAACACCAATGGGCAT 58.273 45.000 3.55 0.00 42.29 4.40
411 418 1.415659 CTTTTGGAACACCAATGGGCA 59.584 47.619 3.55 0.00 42.29 5.36
412 419 1.416030 ACTTTTGGAACACCAATGGGC 59.584 47.619 3.55 0.00 42.29 5.36
413 420 3.006430 GGTACTTTTGGAACACCAATGGG 59.994 47.826 3.55 0.00 42.29 4.00
414 421 3.895041 AGGTACTTTTGGAACACCAATGG 59.105 43.478 0.00 0.00 42.29 3.16
415 422 4.795962 GCAGGTACTTTTGGAACACCAATG 60.796 45.833 0.00 0.00 39.18 2.82
416 423 3.320826 GCAGGTACTTTTGGAACACCAAT 59.679 43.478 0.00 0.00 39.18 3.16
417 424 2.691011 GCAGGTACTTTTGGAACACCAA 59.309 45.455 0.00 0.00 38.17 3.67
418 425 2.303175 GCAGGTACTTTTGGAACACCA 58.697 47.619 0.00 0.00 33.34 4.17
419 426 2.303175 TGCAGGTACTTTTGGAACACC 58.697 47.619 0.00 0.00 33.34 4.16
420 427 3.821033 AGATGCAGGTACTTTTGGAACAC 59.179 43.478 0.00 0.00 33.34 3.32
421 428 4.098914 AGATGCAGGTACTTTTGGAACA 57.901 40.909 0.00 0.00 34.60 3.18
422 429 7.173390 GGATATAGATGCAGGTACTTTTGGAAC 59.827 40.741 0.00 0.00 34.60 3.62
423 430 7.224297 GGATATAGATGCAGGTACTTTTGGAA 58.776 38.462 0.00 0.00 34.60 3.53
424 431 6.518369 CGGATATAGATGCAGGTACTTTTGGA 60.518 42.308 0.00 0.00 34.60 3.53
425 432 5.639506 CGGATATAGATGCAGGTACTTTTGG 59.360 44.000 0.00 0.00 34.60 3.28
426 433 5.120830 GCGGATATAGATGCAGGTACTTTTG 59.879 44.000 0.00 0.00 34.60 2.44
427 434 5.221641 TGCGGATATAGATGCAGGTACTTTT 60.222 40.000 0.00 0.00 34.60 2.27
428 435 4.283467 TGCGGATATAGATGCAGGTACTTT 59.717 41.667 0.00 0.00 34.60 2.66
429 436 3.832490 TGCGGATATAGATGCAGGTACTT 59.168 43.478 0.00 0.00 34.60 2.24
430 437 3.431415 TGCGGATATAGATGCAGGTACT 58.569 45.455 0.00 0.00 43.88 2.73
431 438 3.868757 TGCGGATATAGATGCAGGTAC 57.131 47.619 0.00 0.00 32.73 3.34
445 452 1.977009 TCCACACGAGTCTGCGGAT 60.977 57.895 0.00 0.00 35.12 4.18
456 463 1.733912 CATCCACAGATTGTCCACACG 59.266 52.381 0.00 0.00 0.00 4.49
459 466 2.290260 TGTCCATCCACAGATTGTCCAC 60.290 50.000 0.00 0.00 0.00 4.02
464 471 1.339055 ACGGTGTCCATCCACAGATTG 60.339 52.381 0.00 0.00 37.06 2.67
466 473 0.250234 CACGGTGTCCATCCACAGAT 59.750 55.000 0.00 0.00 37.06 2.90
477 484 0.027063 CACAAAACGGACACGGTGTC 59.973 55.000 28.65 28.65 46.23 3.67
495 502 1.451927 GCATCTCCAATGCCGACCA 60.452 57.895 0.00 0.00 39.01 4.02
515 523 7.912778 ATGTAGGGCATGTTTTGGTTATTAT 57.087 32.000 0.00 0.00 36.26 1.28
519 527 5.777732 AGAAATGTAGGGCATGTTTTGGTTA 59.222 36.000 0.00 0.00 37.96 2.85
520 528 4.592778 AGAAATGTAGGGCATGTTTTGGTT 59.407 37.500 0.00 0.00 37.96 3.67
522 530 4.220382 TGAGAAATGTAGGGCATGTTTTGG 59.780 41.667 0.00 0.00 37.96 3.28
524 532 5.304101 TGTTGAGAAATGTAGGGCATGTTTT 59.696 36.000 0.00 0.00 37.96 2.43
536 544 3.058224 GCGGCTAAGTTGTTGAGAAATGT 60.058 43.478 0.00 0.00 0.00 2.71
537 545 3.492313 GCGGCTAAGTTGTTGAGAAATG 58.508 45.455 0.00 0.00 0.00 2.32
538 546 2.488153 GGCGGCTAAGTTGTTGAGAAAT 59.512 45.455 0.00 0.00 0.00 2.17
545 554 2.033194 GCGAGGCGGCTAAGTTGTT 61.033 57.895 13.24 0.00 0.00 2.83
554 563 3.793144 CTTGAGTTGCGAGGCGGC 61.793 66.667 0.00 0.00 0.00 6.53
562 571 2.162408 GGCAGATGTTACCTTGAGTTGC 59.838 50.000 0.00 0.00 0.00 4.17
579 588 1.604378 CTGGGGGAGTAACAGGCAG 59.396 63.158 0.00 0.00 0.00 4.85
584 593 0.250553 CGTTTGCTGGGGGAGTAACA 60.251 55.000 0.00 0.00 0.00 2.41
585 594 1.583495 GCGTTTGCTGGGGGAGTAAC 61.583 60.000 0.00 0.00 38.39 2.50
597 606 8.388103 TCTGTAAAGAAATATAAGAGCGTTTGC 58.612 33.333 0.00 0.00 43.24 3.68
601 610 9.817809 TCATTCTGTAAAGAAATATAAGAGCGT 57.182 29.630 0.00 0.00 0.00 5.07
609 618 9.614792 GGGTGTACTCATTCTGTAAAGAAATAT 57.385 33.333 0.00 0.00 0.00 1.28
610 619 8.598916 TGGGTGTACTCATTCTGTAAAGAAATA 58.401 33.333 0.00 0.00 0.00 1.40
611 620 7.458397 TGGGTGTACTCATTCTGTAAAGAAAT 58.542 34.615 0.00 0.00 0.00 2.17
612 621 6.833041 TGGGTGTACTCATTCTGTAAAGAAA 58.167 36.000 0.00 0.00 0.00 2.52
613 622 6.428083 TGGGTGTACTCATTCTGTAAAGAA 57.572 37.500 0.00 0.00 0.00 2.52
614 623 6.620877 ATGGGTGTACTCATTCTGTAAAGA 57.379 37.500 0.00 0.00 0.00 2.52
615 624 9.698309 CTATATGGGTGTACTCATTCTGTAAAG 57.302 37.037 2.25 0.00 0.00 1.85
616 625 9.209048 ACTATATGGGTGTACTCATTCTGTAAA 57.791 33.333 2.25 0.00 0.00 2.01
617 626 8.777578 ACTATATGGGTGTACTCATTCTGTAA 57.222 34.615 2.25 0.00 0.00 2.41
618 627 9.516546 CTACTATATGGGTGTACTCATTCTGTA 57.483 37.037 2.25 3.81 0.00 2.74
619 628 8.005388 ACTACTATATGGGTGTACTCATTCTGT 58.995 37.037 2.25 2.92 0.00 3.41
620 629 8.410673 ACTACTATATGGGTGTACTCATTCTG 57.589 38.462 2.25 0.00 0.00 3.02
625 634 9.682465 GATGATACTACTATATGGGTGTACTCA 57.318 37.037 0.00 0.00 0.00 3.41
626 635 8.828644 CGATGATACTACTATATGGGTGTACTC 58.171 40.741 0.00 0.00 0.00 2.59
627 636 7.282675 GCGATGATACTACTATATGGGTGTACT 59.717 40.741 0.00 0.00 0.00 2.73
628 637 7.066645 TGCGATGATACTACTATATGGGTGTAC 59.933 40.741 0.00 0.00 0.00 2.90
629 638 7.066645 GTGCGATGATACTACTATATGGGTGTA 59.933 40.741 0.00 0.00 0.00 2.90
630 639 5.949952 TGCGATGATACTACTATATGGGTGT 59.050 40.000 0.00 0.00 0.00 4.16
631 640 6.127730 TGTGCGATGATACTACTATATGGGTG 60.128 42.308 0.00 0.00 0.00 4.61
632 641 5.949952 TGTGCGATGATACTACTATATGGGT 59.050 40.000 0.00 0.00 0.00 4.51
633 642 6.451064 TGTGCGATGATACTACTATATGGG 57.549 41.667 0.00 0.00 0.00 4.00
634 643 7.377131 CGAATGTGCGATGATACTACTATATGG 59.623 40.741 0.00 0.00 0.00 2.74
635 644 7.096844 GCGAATGTGCGATGATACTACTATATG 60.097 40.741 0.00 0.00 0.00 1.78
636 645 6.913132 GCGAATGTGCGATGATACTACTATAT 59.087 38.462 0.00 0.00 0.00 0.86
637 646 6.093633 AGCGAATGTGCGATGATACTACTATA 59.906 38.462 0.00 0.00 40.67 1.31
642 651 3.643159 AGCGAATGTGCGATGATACTA 57.357 42.857 0.00 0.00 40.67 1.82
643 652 2.515926 AGCGAATGTGCGATGATACT 57.484 45.000 0.00 0.00 40.67 2.12
685 694 3.057736 CCACTCTTGTTCCTGCATGAAAG 60.058 47.826 5.96 3.17 0.00 2.62
705 714 7.341769 AGGATTTTCCGTATGATCAAATTTCCA 59.658 33.333 0.00 0.00 42.75 3.53
706 715 7.716612 AGGATTTTCCGTATGATCAAATTTCC 58.283 34.615 0.00 0.00 42.75 3.13
717 726 8.662781 TCTGATTTTAGAGGATTTTCCGTATG 57.337 34.615 0.00 0.00 42.75 2.39
830 847 4.091939 GGGGAAAGCCGCGTAGGT 62.092 66.667 4.92 0.00 43.70 3.08
931 967 0.466124 GGGAGAAGAGGACGGGATTG 59.534 60.000 0.00 0.00 0.00 2.67
974 1015 3.704231 CTGTCTGGGCGGGATTGGG 62.704 68.421 0.00 0.00 0.00 4.12
1300 1353 4.856607 CTCTCGCGGTCTTCGGCC 62.857 72.222 6.13 0.00 39.69 6.13
1337 1390 0.729690 GAGCGGGATCAAGAAACAGC 59.270 55.000 0.00 0.00 0.00 4.40
1338 1391 1.065854 AGGAGCGGGATCAAGAAACAG 60.066 52.381 0.00 0.00 0.00 3.16
1339 1392 0.984230 AGGAGCGGGATCAAGAAACA 59.016 50.000 0.00 0.00 0.00 2.83
1352 1413 0.103208 AGATGCGTAAGGAAGGAGCG 59.897 55.000 0.00 0.00 45.01 5.03
1353 1414 1.410882 AGAGATGCGTAAGGAAGGAGC 59.589 52.381 0.00 0.00 45.01 4.70
1357 1418 2.541999 GGTCGAGAGATGCGTAAGGAAG 60.542 54.545 0.00 0.00 45.01 3.46
1359 1420 1.022735 GGTCGAGAGATGCGTAAGGA 58.977 55.000 0.00 0.00 45.19 3.36
1364 1425 0.107410 AGAGAGGTCGAGAGATGCGT 60.107 55.000 0.00 0.00 45.19 5.24
1368 1429 1.064758 ACAGCAGAGAGGTCGAGAGAT 60.065 52.381 0.00 0.00 45.19 2.75
1477 1616 1.136329 TTGAGGAAAGGGAGCAGCCT 61.136 55.000 0.00 0.00 36.66 4.58
1518 1657 1.488705 TAAGAGGGTGGGTGGTGCTG 61.489 60.000 0.00 0.00 0.00 4.41
1519 1658 1.151899 TAAGAGGGTGGGTGGTGCT 60.152 57.895 0.00 0.00 0.00 4.40
1520 1659 1.002502 GTAAGAGGGTGGGTGGTGC 60.003 63.158 0.00 0.00 0.00 5.01
1564 1703 1.462731 AAATGCGAGCCCAAGCACAA 61.463 50.000 0.00 0.00 46.83 3.33
1602 1741 6.106673 AGATATCTGAACCTGTAAAACACGG 58.893 40.000 3.89 0.00 0.00 4.94
1603 1742 6.811665 TGAGATATCTGAACCTGTAAAACACG 59.188 38.462 10.74 0.00 0.00 4.49
1622 1761 3.785486 CATGTCCTTGACGCTTGAGATA 58.215 45.455 0.00 0.00 34.95 1.98
1633 1772 1.198094 TTCCGAGGGCATGTCCTTGA 61.198 55.000 31.80 22.41 40.07 3.02
1672 1811 1.570803 AGATCTGCTGAGCTCCTTGT 58.429 50.000 12.15 0.00 32.99 3.16
1715 1854 2.352805 CTCCCAACCACAGGAGGC 59.647 66.667 0.00 0.00 45.08 4.70
1721 1860 1.150536 GCCTTGACTCCCAACCACA 59.849 57.895 0.00 0.00 0.00 4.17
1726 1865 3.068881 CTCCGCCTTGACTCCCAA 58.931 61.111 0.00 0.00 0.00 4.12
1783 1925 4.468765 CAGATCTCACTGTCTGTTCCAT 57.531 45.455 0.00 0.00 37.62 3.41
1795 1937 3.650070 TGACACTGTCACAGATCTCAC 57.350 47.619 13.14 0.00 37.67 3.51
1796 1938 4.342092 TCTTTGACACTGTCACAGATCTCA 59.658 41.667 19.74 5.79 42.17 3.27
1834 1976 1.248101 TGCGAGATCAACAGGGACGA 61.248 55.000 0.00 0.00 0.00 4.20
1835 1977 0.389817 TTGCGAGATCAACAGGGACG 60.390 55.000 0.00 0.00 0.00 4.79
1836 1978 1.363744 CTTGCGAGATCAACAGGGAC 58.636 55.000 0.00 0.00 0.00 4.46
1837 1979 0.391661 GCTTGCGAGATCAACAGGGA 60.392 55.000 4.70 0.00 0.00 4.20
1885 2028 1.209128 AGACGCAAACAAGAGACGTG 58.791 50.000 0.00 0.00 37.05 4.49
1911 2056 0.451783 GAAATGTAACCAGCCCTGCG 59.548 55.000 0.00 0.00 0.00 5.18
1918 2063 3.947196 TGCTATGCAGGAAATGTAACCAG 59.053 43.478 0.00 0.00 33.32 4.00
1921 2066 4.635765 TCAGTGCTATGCAGGAAATGTAAC 59.364 41.667 0.00 0.00 40.08 2.50
1941 2086 4.695396 AGCAGAAGCACAGATTATCTCAG 58.305 43.478 0.00 0.00 45.49 3.35
2090 2235 5.823570 ACTCTAAGAGAAGCGCAGTAAGATA 59.176 40.000 11.47 0.00 33.32 1.98
2110 2259 3.511934 ACACTATCAGAAAGCCGAACTCT 59.488 43.478 0.00 0.00 0.00 3.24
2188 2337 7.488187 TTGTTTCTCTTCAGACAATCTTCTG 57.512 36.000 0.00 0.00 43.93 3.02
2200 2349 7.719193 TGGTCAGATGTAATTTGTTTCTCTTCA 59.281 33.333 0.00 0.00 29.21 3.02
2207 2356 8.408043 TCATTCTGGTCAGATGTAATTTGTTT 57.592 30.769 1.16 0.00 37.29 2.83
2209 2358 7.613022 ACATCATTCTGGTCAGATGTAATTTGT 59.387 33.333 5.21 0.00 46.54 2.83
2224 2373 0.256752 TGGCCTGGACATCATTCTGG 59.743 55.000 3.32 0.00 0.00 3.86
2225 2374 1.064906 ACTGGCCTGGACATCATTCTG 60.065 52.381 14.82 0.00 0.00 3.02
2254 2403 0.392193 CTTCTACAGTGGCAGGCTGG 60.392 60.000 17.64 0.96 38.22 4.85
2258 2407 3.007398 AGAGAAACTTCTACAGTGGCAGG 59.993 47.826 0.00 0.00 37.73 4.85
2328 2477 2.024176 TGGGTCTCCAACTGAAGCTA 57.976 50.000 0.00 0.00 40.73 3.32
2464 2619 0.319555 TTGACGCCTTCTCTTCCACG 60.320 55.000 0.00 0.00 0.00 4.94
2479 2634 4.699257 ACAGGCTTCTCATCTGATTTTGAC 59.301 41.667 0.00 0.00 33.19 3.18
2524 2679 1.477558 CCTTCAGCCTTCACAACAGGT 60.478 52.381 0.00 0.00 33.40 4.00
2577 2732 5.048013 GGTACAATCTTGGTTTCCTCTTTGG 60.048 44.000 0.00 0.00 37.10 3.28
2578 2733 5.770162 AGGTACAATCTTGGTTTCCTCTTTG 59.230 40.000 0.00 0.00 0.00 2.77
2700 2855 9.234827 AGAAGAATACATGATGTCAATTGTCAA 57.765 29.630 9.41 0.00 0.00 3.18
2741 2896 2.194056 CCTCATGCAGCGGGGAAT 59.806 61.111 0.00 0.00 0.00 3.01
2791 2946 3.370840 AATGGCAGCATCCTCTTGTAA 57.629 42.857 0.00 0.00 0.00 2.41
2861 3016 8.120465 ACAAACAACTCTAAAATAAGTGTCACG 58.880 33.333 0.00 0.00 0.00 4.35
3097 3259 8.260818 CCTTCAAAAGATAGTTCTCATCTGGTA 58.739 37.037 0.00 0.00 33.03 3.25
3153 3315 3.763360 CTGACATCCAGAGAGACTTCTGT 59.237 47.826 11.34 0.00 45.78 3.41
3186 3348 4.036027 CACTTCTTGTGTGACTTTCTGCAT 59.964 41.667 0.00 0.00 41.53 3.96
3259 3421 2.968574 GCTAGGACATCATTCCTCTCCA 59.031 50.000 0.00 0.00 42.98 3.86
3260 3422 3.006752 CAGCTAGGACATCATTCCTCTCC 59.993 52.174 0.00 0.00 42.98 3.71
3278 3440 1.750930 CTGACACTGACCACCAGCT 59.249 57.895 0.00 0.00 46.81 4.24
3287 3449 0.755079 AGACAGCAAGCTGACACTGA 59.245 50.000 27.17 0.00 46.30 3.41
3311 3473 1.066858 TCACTTTCCTTAGCAGAGCCG 60.067 52.381 0.00 0.00 0.00 5.52
3412 3574 4.599041 AGATACTTCAGAGACAGCAGACT 58.401 43.478 0.00 0.00 0.00 3.24
3413 3575 4.202010 GGAGATACTTCAGAGACAGCAGAC 60.202 50.000 0.00 0.00 0.00 3.51
3414 3576 3.951037 GGAGATACTTCAGAGACAGCAGA 59.049 47.826 0.00 0.00 0.00 4.26
3415 3577 3.953612 AGGAGATACTTCAGAGACAGCAG 59.046 47.826 0.00 0.00 0.00 4.24
3416 3578 3.698539 CAGGAGATACTTCAGAGACAGCA 59.301 47.826 0.00 0.00 0.00 4.41
3417 3579 3.951037 TCAGGAGATACTTCAGAGACAGC 59.049 47.826 0.00 0.00 0.00 4.40
3418 3580 4.580167 CCTCAGGAGATACTTCAGAGACAG 59.420 50.000 0.00 0.00 0.00 3.51
3419 3581 4.228438 TCCTCAGGAGATACTTCAGAGACA 59.772 45.833 0.00 0.00 0.00 3.41
3420 3582 4.787551 TCCTCAGGAGATACTTCAGAGAC 58.212 47.826 0.00 0.00 0.00 3.36
3421 3583 5.384336 CATCCTCAGGAGATACTTCAGAGA 58.616 45.833 0.00 0.00 34.05 3.10
3422 3584 4.523943 CCATCCTCAGGAGATACTTCAGAG 59.476 50.000 0.00 0.00 34.05 3.35
3423 3585 4.478203 CCATCCTCAGGAGATACTTCAGA 58.522 47.826 0.00 0.00 34.05 3.27
3424 3586 3.006752 GCCATCCTCAGGAGATACTTCAG 59.993 52.174 0.00 0.00 34.05 3.02
3425 3587 2.968574 GCCATCCTCAGGAGATACTTCA 59.031 50.000 0.00 0.00 34.05 3.02
3426 3588 2.029470 CGCCATCCTCAGGAGATACTTC 60.029 54.545 0.00 0.00 34.05 3.01
3427 3589 1.967066 CGCCATCCTCAGGAGATACTT 59.033 52.381 0.00 0.00 34.05 2.24
3428 3590 1.145945 TCGCCATCCTCAGGAGATACT 59.854 52.381 0.00 0.00 34.05 2.12
3429 3591 1.621992 TCGCCATCCTCAGGAGATAC 58.378 55.000 0.00 0.00 34.05 2.24
3430 3592 2.612285 ATCGCCATCCTCAGGAGATA 57.388 50.000 0.00 0.00 42.74 1.98
3431 3593 2.175202 GTATCGCCATCCTCAGGAGAT 58.825 52.381 0.00 0.00 45.71 2.75
3432 3594 1.133482 TGTATCGCCATCCTCAGGAGA 60.133 52.381 0.00 0.00 39.31 3.71
3433 3595 1.271934 CTGTATCGCCATCCTCAGGAG 59.728 57.143 0.00 0.00 34.05 3.69
3434 3596 1.133482 TCTGTATCGCCATCCTCAGGA 60.133 52.381 0.00 0.00 35.55 3.86
3435 3597 1.332195 TCTGTATCGCCATCCTCAGG 58.668 55.000 0.00 0.00 0.00 3.86
3436 3598 2.560105 TCATCTGTATCGCCATCCTCAG 59.440 50.000 0.00 0.00 0.00 3.35
3437 3599 2.597455 TCATCTGTATCGCCATCCTCA 58.403 47.619 0.00 0.00 0.00 3.86
3438 3600 3.667497 TTCATCTGTATCGCCATCCTC 57.333 47.619 0.00 0.00 0.00 3.71
3439 3601 4.040829 TCATTTCATCTGTATCGCCATCCT 59.959 41.667 0.00 0.00 0.00 3.24
3440 3602 4.318332 TCATTTCATCTGTATCGCCATCC 58.682 43.478 0.00 0.00 0.00 3.51
3441 3603 5.929697 TTCATTTCATCTGTATCGCCATC 57.070 39.130 0.00 0.00 0.00 3.51
3442 3604 6.057533 TCTTTCATTTCATCTGTATCGCCAT 58.942 36.000 0.00 0.00 0.00 4.40
3443 3605 5.427378 TCTTTCATTTCATCTGTATCGCCA 58.573 37.500 0.00 0.00 0.00 5.69
3444 3606 5.049818 CCTCTTTCATTTCATCTGTATCGCC 60.050 44.000 0.00 0.00 0.00 5.54
3445 3607 5.525378 ACCTCTTTCATTTCATCTGTATCGC 59.475 40.000 0.00 0.00 0.00 4.58
3446 3608 8.543774 GTTACCTCTTTCATTTCATCTGTATCG 58.456 37.037 0.00 0.00 0.00 2.92
3447 3609 9.383519 TGTTACCTCTTTCATTTCATCTGTATC 57.616 33.333 0.00 0.00 0.00 2.24
3448 3610 9.388506 CTGTTACCTCTTTCATTTCATCTGTAT 57.611 33.333 0.00 0.00 0.00 2.29
3449 3611 8.593679 TCTGTTACCTCTTTCATTTCATCTGTA 58.406 33.333 0.00 0.00 0.00 2.74
3450 3612 7.453393 TCTGTTACCTCTTTCATTTCATCTGT 58.547 34.615 0.00 0.00 0.00 3.41
3451 3613 7.821359 TCTCTGTTACCTCTTTCATTTCATCTG 59.179 37.037 0.00 0.00 0.00 2.90
3452 3614 7.911651 TCTCTGTTACCTCTTTCATTTCATCT 58.088 34.615 0.00 0.00 0.00 2.90
3453 3615 8.553459 TTCTCTGTTACCTCTTTCATTTCATC 57.447 34.615 0.00 0.00 0.00 2.92
3454 3616 8.787852 GTTTCTCTGTTACCTCTTTCATTTCAT 58.212 33.333 0.00 0.00 0.00 2.57
3455 3617 7.228706 GGTTTCTCTGTTACCTCTTTCATTTCA 59.771 37.037 0.00 0.00 0.00 2.69
3456 3618 7.228706 TGGTTTCTCTGTTACCTCTTTCATTTC 59.771 37.037 0.00 0.00 33.05 2.17
3457 3619 7.060421 TGGTTTCTCTGTTACCTCTTTCATTT 58.940 34.615 0.00 0.00 33.05 2.32
3458 3620 6.601332 TGGTTTCTCTGTTACCTCTTTCATT 58.399 36.000 0.00 0.00 33.05 2.57
3459 3621 6.187727 TGGTTTCTCTGTTACCTCTTTCAT 57.812 37.500 0.00 0.00 33.05 2.57
3460 3622 5.611374 CTGGTTTCTCTGTTACCTCTTTCA 58.389 41.667 0.00 0.00 33.05 2.69
3461 3623 4.452795 GCTGGTTTCTCTGTTACCTCTTTC 59.547 45.833 0.00 0.00 33.05 2.62
3462 3624 4.141482 TGCTGGTTTCTCTGTTACCTCTTT 60.141 41.667 0.00 0.00 33.05 2.52
3463 3625 3.391296 TGCTGGTTTCTCTGTTACCTCTT 59.609 43.478 0.00 0.00 33.05 2.85
3464 3626 2.972713 TGCTGGTTTCTCTGTTACCTCT 59.027 45.455 0.00 0.00 33.05 3.69
3465 3627 3.402628 TGCTGGTTTCTCTGTTACCTC 57.597 47.619 0.00 0.00 33.05 3.85
3466 3628 4.074970 CAATGCTGGTTTCTCTGTTACCT 58.925 43.478 0.00 0.00 33.05 3.08
3467 3629 4.072131 TCAATGCTGGTTTCTCTGTTACC 58.928 43.478 0.00 0.00 0.00 2.85
3468 3630 4.757149 AGTCAATGCTGGTTTCTCTGTTAC 59.243 41.667 0.00 0.00 0.00 2.50
3469 3631 4.756642 CAGTCAATGCTGGTTTCTCTGTTA 59.243 41.667 0.00 0.00 33.11 2.41
3470 3632 3.567164 CAGTCAATGCTGGTTTCTCTGTT 59.433 43.478 0.00 0.00 33.11 3.16
3471 3633 3.144506 CAGTCAATGCTGGTTTCTCTGT 58.855 45.455 0.00 0.00 33.11 3.41
3472 3634 3.826236 CAGTCAATGCTGGTTTCTCTG 57.174 47.619 0.00 0.00 33.11 3.35
3484 3646 3.805207 TCATCTCCATCTGCAGTCAATG 58.195 45.455 14.67 10.17 0.00 2.82
3485 3647 3.455177 ACTCATCTCCATCTGCAGTCAAT 59.545 43.478 14.67 0.00 0.00 2.57
3486 3648 2.836372 ACTCATCTCCATCTGCAGTCAA 59.164 45.455 14.67 0.00 0.00 3.18
3487 3649 2.429971 GACTCATCTCCATCTGCAGTCA 59.570 50.000 14.67 0.00 31.08 3.41
3488 3650 2.429971 TGACTCATCTCCATCTGCAGTC 59.570 50.000 14.67 0.25 0.00 3.51
3489 3651 2.464782 TGACTCATCTCCATCTGCAGT 58.535 47.619 14.67 0.00 0.00 4.40
3490 3652 3.118702 ACTTGACTCATCTCCATCTGCAG 60.119 47.826 7.63 7.63 0.00 4.41
3491 3653 2.836372 ACTTGACTCATCTCCATCTGCA 59.164 45.455 0.00 0.00 0.00 4.41
3492 3654 3.196463 CACTTGACTCATCTCCATCTGC 58.804 50.000 0.00 0.00 0.00 4.26
3493 3655 3.450096 TCCACTTGACTCATCTCCATCTG 59.550 47.826 0.00 0.00 0.00 2.90
3494 3656 3.717576 TCCACTTGACTCATCTCCATCT 58.282 45.455 0.00 0.00 0.00 2.90
3495 3657 4.686191 ATCCACTTGACTCATCTCCATC 57.314 45.455 0.00 0.00 0.00 3.51
3496 3658 5.454471 GCTAATCCACTTGACTCATCTCCAT 60.454 44.000 0.00 0.00 0.00 3.41
3497 3659 4.141846 GCTAATCCACTTGACTCATCTCCA 60.142 45.833 0.00 0.00 0.00 3.86
3498 3660 4.141846 TGCTAATCCACTTGACTCATCTCC 60.142 45.833 0.00 0.00 0.00 3.71
3522 3780 1.876156 CAGAAACTCACCCTTGTCTGC 59.124 52.381 0.00 0.00 0.00 4.26
3568 3826 4.503741 TTGCATTGTAACTCCTTTGAGC 57.496 40.909 0.00 0.00 42.74 4.26
3576 3834 5.496133 AGATCAGCATTGCATTGTAACTC 57.504 39.130 11.91 3.69 0.00 3.01
3683 3941 2.159128 AGAATCATGTCTCTCTGGTGCG 60.159 50.000 0.00 0.00 0.00 5.34
4244 4502 3.058639 CAGCGTTTCTCTCCTTTGGAAAG 60.059 47.826 0.00 0.00 35.79 2.62
4246 4504 2.104111 TCAGCGTTTCTCTCCTTTGGAA 59.896 45.455 0.00 0.00 0.00 3.53
4250 4508 8.738645 AAATATATTCAGCGTTTCTCTCCTTT 57.261 30.769 0.00 0.00 0.00 3.11
4384 4647 9.950680 AGATATAACCATGATTTAAAAACTGCG 57.049 29.630 0.00 0.00 0.00 5.18
4393 4656 9.440773 GCTCATGTCAGATATAACCATGATTTA 57.559 33.333 0.00 0.00 40.59 1.40
4412 4675 1.226542 CCATGCAGAGGGCTCATGT 59.773 57.895 0.00 0.00 45.15 3.21
4538 4825 0.035056 TAAGCTGAGAAAGGGCAGGC 60.035 55.000 0.00 0.00 32.83 4.85
4627 4914 5.745294 GGCAAATATATTGCAAGTCACAGTG 59.255 40.000 14.34 0.00 46.58 3.66
4668 4956 6.708054 ACAGAAATGTTTCTTCAGTACTGAGG 59.292 38.462 24.99 24.99 44.70 3.86
4699 4987 1.152943 CCATCTGCTCCTGCTGCAT 60.153 57.895 1.31 0.00 39.86 3.96
4823 5111 0.949105 AACCGTTGCGCAAGGTAGAG 60.949 55.000 33.22 23.04 37.26 2.43
4824 5112 0.533308 AAACCGTTGCGCAAGGTAGA 60.533 50.000 33.22 7.61 37.26 2.59
4858 5146 4.546829 TGCTTAGTTAAACCGACTCCAT 57.453 40.909 0.00 0.00 0.00 3.41
4859 5147 4.060205 GTTGCTTAGTTAAACCGACTCCA 58.940 43.478 0.00 0.00 0.00 3.86
4877 5165 5.978919 TGAATTCATTCAAAGACACAGTTGC 59.021 36.000 3.38 0.00 43.26 4.17
4881 5169 5.706916 CCCTGAATTCATTCAAAGACACAG 58.293 41.667 8.96 0.00 45.26 3.66
5009 5297 0.178068 AGGGAATCAATCACCGGTCG 59.822 55.000 2.59 0.00 28.52 4.79
5026 5314 0.322098 TACCACAAACATCCGGCAGG 60.322 55.000 0.00 0.00 39.46 4.85
5082 5370 8.468720 TCATGAGACAACAATTGCATAATTTG 57.531 30.769 5.05 4.07 34.34 2.32
5083 5371 9.661563 AATCATGAGACAACAATTGCATAATTT 57.338 25.926 5.05 0.00 34.34 1.82
5148 5438 4.500375 CCAGCTTTTGTTCCTTCTTCCTTG 60.500 45.833 0.00 0.00 0.00 3.61
5230 5522 2.715046 GAGACCAGATTGGCATGTTCA 58.285 47.619 0.00 0.00 42.67 3.18
5355 5658 0.034863 TTGATTTGAGCCGTACCCCC 60.035 55.000 0.00 0.00 0.00 5.40
5362 5665 3.574284 TTGAATGGTTGATTTGAGCCG 57.426 42.857 0.00 0.00 0.00 5.52
5401 5704 1.338484 TGCTCAGGATTGTCTGTCAGC 60.338 52.381 0.00 0.00 36.25 4.26
5479 5810 2.289444 ACATTCTACCACAAGACCACCG 60.289 50.000 0.00 0.00 0.00 4.94
5490 5821 0.249699 CGGCGCCATACATTCTACCA 60.250 55.000 28.98 0.00 0.00 3.25
5496 5827 2.111043 CCTCCGGCGCCATACATT 59.889 61.111 28.98 0.00 0.00 2.71
5769 6100 5.241949 GTGTAAGACAGAGTTCTTGAGGAGA 59.758 44.000 0.00 0.00 36.48 3.71
5773 6111 6.325919 AGAGTGTAAGACAGAGTTCTTGAG 57.674 41.667 0.00 0.00 36.48 3.02
5774 6112 6.716934 AAGAGTGTAAGACAGAGTTCTTGA 57.283 37.500 0.00 0.00 36.48 3.02
5777 6115 8.921353 TTAGTAAGAGTGTAAGACAGAGTTCT 57.079 34.615 0.00 0.00 0.00 3.01
5778 6116 9.562583 CATTAGTAAGAGTGTAAGACAGAGTTC 57.437 37.037 0.00 0.00 0.00 3.01
5779 6117 8.030106 GCATTAGTAAGAGTGTAAGACAGAGTT 58.970 37.037 0.00 0.00 0.00 3.01
5780 6118 7.394923 AGCATTAGTAAGAGTGTAAGACAGAGT 59.605 37.037 0.00 0.00 0.00 3.24
5781 6119 7.767261 AGCATTAGTAAGAGTGTAAGACAGAG 58.233 38.462 0.00 0.00 0.00 3.35
5782 6120 7.704578 AGCATTAGTAAGAGTGTAAGACAGA 57.295 36.000 0.00 0.00 0.00 3.41
5783 6121 8.679100 ACTAGCATTAGTAAGAGTGTAAGACAG 58.321 37.037 0.00 0.00 38.35 3.51
5784 6122 8.459635 CACTAGCATTAGTAAGAGTGTAAGACA 58.540 37.037 0.00 0.00 38.05 3.41
5785 6123 7.432838 GCACTAGCATTAGTAAGAGTGTAAGAC 59.567 40.741 13.94 0.00 38.05 3.01
5786 6124 7.339721 AGCACTAGCATTAGTAAGAGTGTAAGA 59.660 37.037 13.94 0.00 45.49 2.10
5788 6126 7.258441 CAGCACTAGCATTAGTAAGAGTGTAA 58.742 38.462 13.94 0.00 45.49 2.41
5791 6129 4.505922 GCAGCACTAGCATTAGTAAGAGTG 59.494 45.833 10.48 10.48 45.49 3.51
5792 6130 4.404073 AGCAGCACTAGCATTAGTAAGAGT 59.596 41.667 0.00 0.00 45.49 3.24
5846 6185 3.687102 TCATCGTCCCGCCAACGT 61.687 61.111 0.00 0.00 40.86 3.99
5847 6186 3.186047 GTCATCGTCCCGCCAACG 61.186 66.667 0.00 0.00 41.39 4.10
5959 6298 2.286654 GCTCGCCTGCTAATGACAATTC 60.287 50.000 0.00 0.00 0.00 2.17
5980 6319 1.301716 CGGTCCACCCAACACTGAG 60.302 63.158 0.00 0.00 0.00 3.35
6053 6395 4.673968 AGGTCTCACAAGATGTAGTGGTA 58.326 43.478 0.00 0.00 36.43 3.25
6054 6396 3.511477 AGGTCTCACAAGATGTAGTGGT 58.489 45.455 0.00 0.00 36.43 4.16
6055 6397 4.098654 CCTAGGTCTCACAAGATGTAGTGG 59.901 50.000 0.00 0.00 36.43 4.00
6056 6398 4.440802 GCCTAGGTCTCACAAGATGTAGTG 60.441 50.000 11.31 0.00 37.10 2.74
6057 6399 3.702045 GCCTAGGTCTCACAAGATGTAGT 59.298 47.826 11.31 0.00 33.08 2.73
6058 6400 3.701542 TGCCTAGGTCTCACAAGATGTAG 59.298 47.826 11.31 0.00 33.08 2.74
6059 6401 3.708451 TGCCTAGGTCTCACAAGATGTA 58.292 45.455 11.31 0.00 33.08 2.29
6126 6471 3.659092 CGAGGCAACGCAAGGCAA 61.659 61.111 0.00 0.00 46.39 4.52
6133 6478 0.387622 TGTAGTACACGAGGCAACGC 60.388 55.000 0.00 0.00 46.39 4.84
6134 6479 1.334054 GTGTAGTACACGAGGCAACG 58.666 55.000 17.29 2.85 39.53 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.