Multiple sequence alignment - TraesCS3B01G098100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G098100 chr3B 100.000 3987 0 0 1 3987 65551395 65555381 0.000000e+00 7363.0
1 TraesCS3B01G098100 chr3B 77.941 204 35 9 6 204 41662138 41661940 7.000000e-23 119.0
2 TraesCS3B01G098100 chr3B 95.238 42 2 0 2446 2487 65553690 65553731 2.570000e-07 67.6
3 TraesCS3B01G098100 chr3B 95.238 42 2 0 2296 2337 65553840 65553881 2.570000e-07 67.6
4 TraesCS3B01G098100 chr3B 86.792 53 3 2 625 677 173098377 173098425 5.570000e-04 56.5
5 TraesCS3B01G098100 chr3A 95.056 3196 107 24 816 3987 53559248 53562416 0.000000e+00 4979.0
6 TraesCS3B01G098100 chr3A 79.167 264 45 5 6 268 687480440 687480186 1.470000e-39 174.0
7 TraesCS3B01G098100 chr3A 78.906 256 38 8 50 299 11833083 11833328 4.120000e-35 159.0
8 TraesCS3B01G098100 chr3A 100.000 46 0 0 753 798 53559205 53559250 7.100000e-13 86.1
9 TraesCS3B01G098100 chr3A 95.238 42 2 0 2296 2337 53560865 53560906 2.570000e-07 67.6
10 TraesCS3B01G098100 chr3D 95.988 1670 54 7 735 2400 42096041 42094381 0.000000e+00 2700.0
11 TraesCS3B01G098100 chr3D 88.875 1627 94 40 2377 3987 42094435 42092880 0.000000e+00 1921.0
12 TraesCS3B01G098100 chr3D 79.554 269 35 8 6 268 550455176 550454922 1.470000e-39 174.0
13 TraesCS3B01G098100 chr3D 97.619 42 1 0 2296 2337 42094366 42094325 5.530000e-09 73.1
14 TraesCS3B01G098100 chr1B 82.090 402 62 6 1 397 61963821 61963425 6.380000e-88 335.0
15 TraesCS3B01G098100 chr4A 84.058 276 39 3 6 280 69276324 69276595 1.100000e-65 261.0
16 TraesCS3B01G098100 chr7D 81.852 270 46 2 3 272 38223684 38223950 1.440000e-54 224.0
17 TraesCS3B01G098100 chr4B 76.396 394 77 12 1814 2202 11568053 11568435 8.740000e-47 198.0
18 TraesCS3B01G098100 chr4B 76.010 396 68 16 11 400 476237292 476237666 3.170000e-41 180.0
19 TraesCS3B01G098100 chr7B 76.203 395 67 13 6 397 721296316 721295946 2.450000e-42 183.0
20 TraesCS3B01G098100 chr5B 77.736 265 44 8 1 264 491087921 491088171 8.930000e-32 148.0
21 TraesCS3B01G098100 chr7A 100.000 38 0 0 639 676 181833247 181833284 1.990000e-08 71.3
22 TraesCS3B01G098100 chr5A 100.000 38 0 0 639 676 11283791 11283754 1.990000e-08 71.3
23 TraesCS3B01G098100 chr4D 100.000 38 0 0 639 676 87540099 87540062 1.990000e-08 71.3
24 TraesCS3B01G098100 chr4D 85.714 63 9 0 1097 1159 6379660 6379598 2.570000e-07 67.6
25 TraesCS3B01G098100 chr2D 100.000 38 0 0 639 676 83160146 83160183 1.990000e-08 71.3
26 TraesCS3B01G098100 chr6A 100.000 37 0 0 639 675 18652533 18652497 7.150000e-08 69.4
27 TraesCS3B01G098100 chr2A 100.000 37 0 0 640 676 73556045 73556009 7.150000e-08 69.4
28 TraesCS3B01G098100 chr5D 90.385 52 1 2 625 676 386689387 386689340 9.250000e-07 65.8
29 TraesCS3B01G098100 chr1A 90.000 50 4 1 625 674 23825910 23825958 3.330000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G098100 chr3B 65551395 65555381 3986 False 2499.4 7363 96.825333 1 3987 3 chr3B.!!$F2 3986
1 TraesCS3B01G098100 chr3A 53559205 53562416 3211 False 1710.9 4979 96.764667 753 3987 3 chr3A.!!$F2 3234
2 TraesCS3B01G098100 chr3D 42092880 42096041 3161 True 1564.7 2700 94.160667 735 3987 3 chr3D.!!$R2 3252

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 549 0.030638 AAGTGTTTGCCATGCGACAC 59.969 50.0 14.05 14.05 43.46 3.67 F
908 911 0.107848 ACCGGATACCGCCAAAAGAG 60.108 55.0 9.46 0.00 46.86 2.85 F
968 976 0.482887 TCCACTCCCTCACTCACTCA 59.517 55.0 0.00 0.00 0.00 3.41 F
969 977 0.605589 CCACTCCCTCACTCACTCAC 59.394 60.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2153 0.452184 AGTGCTCGTACTCGGATGTG 59.548 55.000 0.00 0.0 37.69 3.21 R
2719 2765 0.882927 TTCCGTGTTCTTTCGCTGGG 60.883 55.000 0.00 0.0 0.00 4.45 R
2896 2942 1.412710 CCTAATCGTCTGGCCTGCTTA 59.587 52.381 3.32 0.0 0.00 3.09 R
2995 3041 1.831580 AGCCTTGCTAAGCCTTTGAG 58.168 50.000 0.00 0.0 36.99 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.469807 AAATTAAGTTGTGTTTTCATATTCGCA 57.530 25.926 0.00 0.00 0.00 5.10
32 33 9.638239 AATTAAGTTGTGTTTTCATATTCGCAT 57.362 25.926 0.00 0.00 0.00 4.73
33 34 9.638239 ATTAAGTTGTGTTTTCATATTCGCATT 57.362 25.926 0.00 0.00 0.00 3.56
34 35 7.945033 AAGTTGTGTTTTCATATTCGCATTT 57.055 28.000 0.00 0.00 0.00 2.32
35 36 7.566858 AGTTGTGTTTTCATATTCGCATTTC 57.433 32.000 0.00 0.00 0.00 2.17
36 37 7.370383 AGTTGTGTTTTCATATTCGCATTTCT 58.630 30.769 0.00 0.00 0.00 2.52
37 38 7.538678 AGTTGTGTTTTCATATTCGCATTTCTC 59.461 33.333 0.00 0.00 0.00 2.87
38 39 6.020984 TGTGTTTTCATATTCGCATTTCTCG 58.979 36.000 0.00 0.00 0.00 4.04
39 40 6.021596 GTGTTTTCATATTCGCATTTCTCGT 58.978 36.000 0.00 0.00 0.00 4.18
40 41 6.020984 TGTTTTCATATTCGCATTTCTCGTG 58.979 36.000 0.00 0.00 0.00 4.35
41 42 6.128418 TGTTTTCATATTCGCATTTCTCGTGA 60.128 34.615 0.00 0.00 0.00 4.35
42 43 5.389642 TTCATATTCGCATTTCTCGTGAC 57.610 39.130 0.00 0.00 0.00 3.67
43 44 3.802139 TCATATTCGCATTTCTCGTGACC 59.198 43.478 0.00 0.00 0.00 4.02
44 45 2.093306 ATTCGCATTTCTCGTGACCA 57.907 45.000 0.00 0.00 0.00 4.02
45 46 1.872388 TTCGCATTTCTCGTGACCAA 58.128 45.000 0.00 0.00 0.00 3.67
46 47 1.144969 TCGCATTTCTCGTGACCAAC 58.855 50.000 0.00 0.00 0.00 3.77
47 48 1.148310 CGCATTTCTCGTGACCAACT 58.852 50.000 0.00 0.00 0.00 3.16
48 49 1.126846 CGCATTTCTCGTGACCAACTC 59.873 52.381 0.00 0.00 0.00 3.01
49 50 2.417719 GCATTTCTCGTGACCAACTCT 58.582 47.619 0.00 0.00 0.00 3.24
50 51 2.808543 GCATTTCTCGTGACCAACTCTT 59.191 45.455 0.00 0.00 0.00 2.85
51 52 3.251004 GCATTTCTCGTGACCAACTCTTT 59.749 43.478 0.00 0.00 0.00 2.52
52 53 4.776743 CATTTCTCGTGACCAACTCTTTG 58.223 43.478 0.00 0.00 0.00 2.77
53 54 3.812156 TTCTCGTGACCAACTCTTTGA 57.188 42.857 0.00 0.00 34.24 2.69
54 55 3.812156 TCTCGTGACCAACTCTTTGAA 57.188 42.857 0.00 0.00 34.24 2.69
55 56 4.131649 TCTCGTGACCAACTCTTTGAAA 57.868 40.909 0.00 0.00 34.24 2.69
56 57 4.703897 TCTCGTGACCAACTCTTTGAAAT 58.296 39.130 0.00 0.00 34.24 2.17
57 58 5.849510 TCTCGTGACCAACTCTTTGAAATA 58.150 37.500 0.00 0.00 34.24 1.40
58 59 6.285224 TCTCGTGACCAACTCTTTGAAATAA 58.715 36.000 0.00 0.00 34.24 1.40
59 60 6.423905 TCTCGTGACCAACTCTTTGAAATAAG 59.576 38.462 0.00 0.00 34.24 1.73
60 61 6.285224 TCGTGACCAACTCTTTGAAATAAGA 58.715 36.000 0.00 0.00 34.24 2.10
61 62 6.764085 TCGTGACCAACTCTTTGAAATAAGAA 59.236 34.615 0.00 0.00 33.96 2.52
62 63 6.851330 CGTGACCAACTCTTTGAAATAAGAAC 59.149 38.462 0.00 0.00 33.96 3.01
63 64 7.139392 GTGACCAACTCTTTGAAATAAGAACC 58.861 38.462 0.00 0.00 33.96 3.62
64 65 6.831353 TGACCAACTCTTTGAAATAAGAACCA 59.169 34.615 0.00 0.00 33.96 3.67
65 66 7.505585 TGACCAACTCTTTGAAATAAGAACCAT 59.494 33.333 0.00 0.00 33.96 3.55
66 67 8.250143 ACCAACTCTTTGAAATAAGAACCATT 57.750 30.769 0.00 0.00 33.96 3.16
67 68 8.704668 ACCAACTCTTTGAAATAAGAACCATTT 58.295 29.630 0.00 0.00 33.96 2.32
68 69 9.546428 CCAACTCTTTGAAATAAGAACCATTTT 57.454 29.630 0.00 0.00 33.96 1.82
133 134 9.099820 GTTTTAATGTTGAAACTTAGTACGAGC 57.900 33.333 6.04 0.00 34.83 5.03
134 135 5.511088 AATGTTGAAACTTAGTACGAGCG 57.489 39.130 0.00 0.00 0.00 5.03
135 136 3.311106 TGTTGAAACTTAGTACGAGCGG 58.689 45.455 0.00 0.00 0.00 5.52
136 137 3.243501 TGTTGAAACTTAGTACGAGCGGT 60.244 43.478 0.00 0.00 0.00 5.68
137 138 3.207474 TGAAACTTAGTACGAGCGGTC 57.793 47.619 4.06 4.06 0.00 4.79
168 169 6.963049 AACAATTATTCTGTGTCTACGACC 57.037 37.500 0.00 0.00 0.00 4.79
169 170 6.032956 ACAATTATTCTGTGTCTACGACCA 57.967 37.500 0.00 0.00 0.00 4.02
170 171 6.460781 ACAATTATTCTGTGTCTACGACCAA 58.539 36.000 0.00 0.00 0.00 3.67
171 172 6.590292 ACAATTATTCTGTGTCTACGACCAAG 59.410 38.462 0.00 0.00 0.00 3.61
172 173 5.970317 TTATTCTGTGTCTACGACCAAGA 57.030 39.130 0.00 0.00 0.00 3.02
173 174 3.917329 TTCTGTGTCTACGACCAAGAG 57.083 47.619 0.00 0.00 29.30 2.85
174 175 2.160205 TCTGTGTCTACGACCAAGAGG 58.840 52.381 0.00 0.00 42.21 3.69
175 176 2.160205 CTGTGTCTACGACCAAGAGGA 58.840 52.381 0.00 0.00 38.69 3.71
176 177 2.557056 CTGTGTCTACGACCAAGAGGAA 59.443 50.000 0.00 0.00 38.69 3.36
177 178 2.960384 TGTGTCTACGACCAAGAGGAAA 59.040 45.455 0.00 0.00 38.69 3.13
178 179 3.385433 TGTGTCTACGACCAAGAGGAAAA 59.615 43.478 0.00 0.00 38.69 2.29
179 180 4.141892 TGTGTCTACGACCAAGAGGAAAAA 60.142 41.667 0.00 0.00 38.69 1.94
180 181 4.995487 GTGTCTACGACCAAGAGGAAAAAT 59.005 41.667 0.00 0.00 38.69 1.82
181 182 5.469084 GTGTCTACGACCAAGAGGAAAAATT 59.531 40.000 0.00 0.00 38.69 1.82
182 183 6.647895 GTGTCTACGACCAAGAGGAAAAATTA 59.352 38.462 0.00 0.00 38.69 1.40
183 184 6.647895 TGTCTACGACCAAGAGGAAAAATTAC 59.352 38.462 0.00 0.00 38.69 1.89
184 185 6.091849 GTCTACGACCAAGAGGAAAAATTACC 59.908 42.308 0.00 0.00 38.69 2.85
185 186 4.981812 ACGACCAAGAGGAAAAATTACCT 58.018 39.130 0.00 0.00 39.41 3.08
186 187 6.117975 ACGACCAAGAGGAAAAATTACCTA 57.882 37.500 0.00 0.00 36.57 3.08
187 188 6.536447 ACGACCAAGAGGAAAAATTACCTAA 58.464 36.000 0.00 0.00 36.57 2.69
188 189 6.999871 ACGACCAAGAGGAAAAATTACCTAAA 59.000 34.615 0.00 0.00 36.57 1.85
189 190 7.503230 ACGACCAAGAGGAAAAATTACCTAAAA 59.497 33.333 0.00 0.00 36.57 1.52
190 191 8.520351 CGACCAAGAGGAAAAATTACCTAAAAT 58.480 33.333 0.00 0.00 36.57 1.82
219 220 6.512297 TCTCTAAAACTTGTTGAAATTGGGC 58.488 36.000 0.00 0.00 0.00 5.36
220 221 6.097554 TCTCTAAAACTTGTTGAAATTGGGCA 59.902 34.615 0.00 0.00 0.00 5.36
221 222 6.825610 TCTAAAACTTGTTGAAATTGGGCAT 58.174 32.000 0.00 0.00 0.00 4.40
222 223 7.278875 TCTAAAACTTGTTGAAATTGGGCATT 58.721 30.769 0.00 0.00 0.00 3.56
223 224 6.772360 AAAACTTGTTGAAATTGGGCATTT 57.228 29.167 0.00 0.00 37.84 2.32
224 225 6.772360 AAACTTGTTGAAATTGGGCATTTT 57.228 29.167 0.00 0.00 35.02 1.82
225 226 6.772360 AACTTGTTGAAATTGGGCATTTTT 57.228 29.167 0.00 0.00 35.02 1.94
226 227 7.872113 AACTTGTTGAAATTGGGCATTTTTA 57.128 28.000 0.00 0.00 35.02 1.52
227 228 7.495135 ACTTGTTGAAATTGGGCATTTTTAG 57.505 32.000 0.00 0.00 35.02 1.85
228 229 7.278875 ACTTGTTGAAATTGGGCATTTTTAGA 58.721 30.769 0.00 0.00 35.02 2.10
229 230 7.938490 ACTTGTTGAAATTGGGCATTTTTAGAT 59.062 29.630 0.00 0.00 35.02 1.98
230 231 7.670009 TGTTGAAATTGGGCATTTTTAGATG 57.330 32.000 0.00 0.00 35.02 2.90
251 252 8.474006 AGATGCAAAAACCGTAAATTTTATCC 57.526 30.769 0.00 0.00 0.00 2.59
252 253 8.311109 AGATGCAAAAACCGTAAATTTTATCCT 58.689 29.630 0.00 0.00 0.00 3.24
253 254 8.840833 ATGCAAAAACCGTAAATTTTATCCTT 57.159 26.923 0.00 0.00 0.00 3.36
254 255 8.077836 TGCAAAAACCGTAAATTTTATCCTTG 57.922 30.769 0.00 0.00 0.00 3.61
255 256 7.926555 TGCAAAAACCGTAAATTTTATCCTTGA 59.073 29.630 0.00 0.00 0.00 3.02
256 257 8.766151 GCAAAAACCGTAAATTTTATCCTTGAA 58.234 29.630 0.00 0.00 0.00 2.69
300 301 2.933495 TTTACTATGCTCTCGTGCGT 57.067 45.000 0.00 0.00 35.36 5.24
301 302 2.188837 TTACTATGCTCTCGTGCGTG 57.811 50.000 0.00 0.00 35.36 5.34
302 303 1.375551 TACTATGCTCTCGTGCGTGA 58.624 50.000 0.00 0.00 35.36 4.35
303 304 0.741326 ACTATGCTCTCGTGCGTGAT 59.259 50.000 0.00 0.00 35.36 3.06
304 305 1.135139 ACTATGCTCTCGTGCGTGATT 59.865 47.619 0.00 0.00 35.36 2.57
305 306 2.196749 CTATGCTCTCGTGCGTGATTT 58.803 47.619 0.00 0.00 35.36 2.17
306 307 1.002366 ATGCTCTCGTGCGTGATTTC 58.998 50.000 0.00 0.00 35.36 2.17
307 308 0.319469 TGCTCTCGTGCGTGATTTCA 60.319 50.000 0.00 0.00 35.36 2.69
308 309 0.790207 GCTCTCGTGCGTGATTTCAA 59.210 50.000 0.00 0.00 0.00 2.69
309 310 1.462541 GCTCTCGTGCGTGATTTCAAC 60.463 52.381 0.00 0.00 0.00 3.18
310 311 2.061773 CTCTCGTGCGTGATTTCAACT 58.938 47.619 0.00 0.00 0.00 3.16
311 312 3.242518 CTCTCGTGCGTGATTTCAACTA 58.757 45.455 0.00 0.00 0.00 2.24
312 313 2.984471 TCTCGTGCGTGATTTCAACTAC 59.016 45.455 0.00 0.00 0.00 2.73
313 314 2.987149 CTCGTGCGTGATTTCAACTACT 59.013 45.455 0.00 0.00 0.00 2.57
314 315 3.386486 TCGTGCGTGATTTCAACTACTT 58.614 40.909 0.00 0.00 0.00 2.24
315 316 3.805422 TCGTGCGTGATTTCAACTACTTT 59.195 39.130 0.00 0.00 0.00 2.66
316 317 4.983538 TCGTGCGTGATTTCAACTACTTTA 59.016 37.500 0.00 0.00 0.00 1.85
317 318 5.636121 TCGTGCGTGATTTCAACTACTTTAT 59.364 36.000 0.00 0.00 0.00 1.40
318 319 5.728049 CGTGCGTGATTTCAACTACTTTATG 59.272 40.000 0.00 0.00 0.00 1.90
319 320 6.400621 CGTGCGTGATTTCAACTACTTTATGA 60.401 38.462 0.00 0.00 0.00 2.15
320 321 7.295201 GTGCGTGATTTCAACTACTTTATGAA 58.705 34.615 0.00 0.00 0.00 2.57
321 322 7.962918 GTGCGTGATTTCAACTACTTTATGAAT 59.037 33.333 0.00 0.00 33.45 2.57
322 323 8.175069 TGCGTGATTTCAACTACTTTATGAATC 58.825 33.333 0.00 0.00 33.45 2.52
323 324 7.370836 GCGTGATTTCAACTACTTTATGAATCG 59.629 37.037 0.00 0.00 33.45 3.34
324 325 8.380644 CGTGATTTCAACTACTTTATGAATCGT 58.619 33.333 0.00 0.00 33.45 3.73
325 326 9.478019 GTGATTTCAACTACTTTATGAATCGTG 57.522 33.333 0.00 0.00 33.45 4.35
326 327 9.430623 TGATTTCAACTACTTTATGAATCGTGA 57.569 29.630 0.00 0.00 33.45 4.35
329 330 7.234187 TCAACTACTTTATGAATCGTGATGC 57.766 36.000 0.00 0.00 0.00 3.91
330 331 6.816140 TCAACTACTTTATGAATCGTGATGCA 59.184 34.615 0.00 0.00 0.00 3.96
331 332 7.333174 TCAACTACTTTATGAATCGTGATGCAA 59.667 33.333 0.00 0.00 28.45 4.08
332 333 7.609760 ACTACTTTATGAATCGTGATGCAAA 57.390 32.000 0.00 0.00 28.45 3.68
333 334 8.213518 ACTACTTTATGAATCGTGATGCAAAT 57.786 30.769 0.00 0.00 28.45 2.32
334 335 8.338259 ACTACTTTATGAATCGTGATGCAAATC 58.662 33.333 0.00 0.00 28.45 2.17
335 336 6.498304 ACTTTATGAATCGTGATGCAAATCC 58.502 36.000 0.00 0.00 28.45 3.01
336 337 6.095300 ACTTTATGAATCGTGATGCAAATCCA 59.905 34.615 0.00 0.00 28.45 3.41
337 338 4.987408 ATGAATCGTGATGCAAATCCAA 57.013 36.364 0.00 0.00 28.45 3.53
338 339 4.095410 TGAATCGTGATGCAAATCCAAC 57.905 40.909 0.00 0.00 0.00 3.77
339 340 2.830772 ATCGTGATGCAAATCCAACG 57.169 45.000 0.00 0.00 0.00 4.10
340 341 1.802069 TCGTGATGCAAATCCAACGA 58.198 45.000 0.00 0.00 0.00 3.85
341 342 2.147150 TCGTGATGCAAATCCAACGAA 58.853 42.857 0.00 0.00 0.00 3.85
342 343 2.095969 TCGTGATGCAAATCCAACGAAC 60.096 45.455 0.00 0.00 0.00 3.95
343 344 2.241722 GTGATGCAAATCCAACGAACG 58.758 47.619 0.00 0.00 0.00 3.95
344 345 1.198867 TGATGCAAATCCAACGAACGG 59.801 47.619 0.00 0.00 0.00 4.44
345 346 0.109319 ATGCAAATCCAACGAACGGC 60.109 50.000 0.00 0.00 0.00 5.68
346 347 1.284408 GCAAATCCAACGAACGGCA 59.716 52.632 0.00 0.00 0.00 5.69
347 348 0.729140 GCAAATCCAACGAACGGCAG 60.729 55.000 0.00 0.00 0.00 4.85
348 349 0.109781 CAAATCCAACGAACGGCAGG 60.110 55.000 0.00 0.00 0.00 4.85
349 350 1.241315 AAATCCAACGAACGGCAGGG 61.241 55.000 0.00 0.00 0.00 4.45
352 353 2.978010 CAACGAACGGCAGGGCTT 60.978 61.111 0.00 0.00 0.00 4.35
353 354 2.978010 AACGAACGGCAGGGCTTG 60.978 61.111 0.00 0.00 0.00 4.01
354 355 3.469863 AACGAACGGCAGGGCTTGA 62.470 57.895 0.00 0.00 0.00 3.02
355 356 3.423154 CGAACGGCAGGGCTTGAC 61.423 66.667 0.00 0.00 0.00 3.18
356 357 2.281484 GAACGGCAGGGCTTGACA 60.281 61.111 2.46 0.00 32.77 3.58
357 358 2.281761 AACGGCAGGGCTTGACAG 60.282 61.111 2.46 0.00 32.77 3.51
358 359 3.120086 AACGGCAGGGCTTGACAGT 62.120 57.895 2.46 0.00 32.77 3.55
359 360 2.281761 CGGCAGGGCTTGACAGTT 60.282 61.111 2.46 0.00 32.77 3.16
360 361 2.620112 CGGCAGGGCTTGACAGTTG 61.620 63.158 2.46 0.00 32.77 3.16
361 362 1.228245 GGCAGGGCTTGACAGTTGA 60.228 57.895 0.00 0.00 33.76 3.18
362 363 1.239968 GGCAGGGCTTGACAGTTGAG 61.240 60.000 0.00 0.00 33.76 3.02
363 364 0.536006 GCAGGGCTTGACAGTTGAGT 60.536 55.000 0.00 0.00 0.00 3.41
364 365 1.233019 CAGGGCTTGACAGTTGAGTG 58.767 55.000 0.00 0.00 0.00 3.51
365 366 0.536006 AGGGCTTGACAGTTGAGTGC 60.536 55.000 0.00 0.00 0.00 4.40
366 367 1.518903 GGGCTTGACAGTTGAGTGCC 61.519 60.000 0.00 0.00 38.28 5.01
367 368 1.518903 GGCTTGACAGTTGAGTGCCC 61.519 60.000 0.00 0.00 33.45 5.36
368 369 0.536006 GCTTGACAGTTGAGTGCCCT 60.536 55.000 0.00 0.00 0.00 5.19
369 370 1.517242 CTTGACAGTTGAGTGCCCTC 58.483 55.000 0.00 0.00 38.27 4.30
370 371 0.249868 TTGACAGTTGAGTGCCCTCG 60.250 55.000 0.00 0.00 40.85 4.63
371 372 2.029844 GACAGTTGAGTGCCCTCGC 61.030 63.158 0.00 0.00 40.85 5.03
372 373 2.031012 CAGTTGAGTGCCCTCGCA 59.969 61.111 0.00 0.00 44.78 5.10
380 381 2.048597 TGCCCTCGCACTTACGTG 60.049 61.111 0.00 0.00 41.12 4.49
381 382 2.813908 GCCCTCGCACTTACGTGG 60.814 66.667 0.00 0.00 44.28 4.94
382 383 2.813908 CCCTCGCACTTACGTGGC 60.814 66.667 0.00 0.00 43.54 5.01
383 384 2.048597 CCTCGCACTTACGTGGCA 60.049 61.111 0.00 0.00 41.51 4.92
384 385 2.380410 CCTCGCACTTACGTGGCAC 61.380 63.158 7.79 7.79 41.51 5.01
385 386 1.372997 CTCGCACTTACGTGGCACT 60.373 57.895 16.72 5.47 41.51 4.40
386 387 1.617755 CTCGCACTTACGTGGCACTG 61.618 60.000 16.72 11.66 41.51 3.66
387 388 2.556287 GCACTTACGTGGCACTGC 59.444 61.111 16.72 14.21 41.51 4.40
388 389 2.250939 GCACTTACGTGGCACTGCA 61.251 57.895 19.98 1.76 41.51 4.41
389 390 1.781025 GCACTTACGTGGCACTGCAA 61.781 55.000 19.98 8.98 41.51 4.08
390 391 0.660488 CACTTACGTGGCACTGCAAA 59.340 50.000 16.72 6.82 37.50 3.68
391 392 1.266718 CACTTACGTGGCACTGCAAAT 59.733 47.619 16.72 0.00 37.50 2.32
392 393 1.953686 ACTTACGTGGCACTGCAAATT 59.046 42.857 16.72 0.36 0.00 1.82
393 394 2.360801 ACTTACGTGGCACTGCAAATTT 59.639 40.909 16.72 0.00 0.00 1.82
394 395 2.697431 TACGTGGCACTGCAAATTTC 57.303 45.000 16.72 0.00 0.00 2.17
395 396 0.031994 ACGTGGCACTGCAAATTTCC 59.968 50.000 16.72 0.00 0.00 3.13
396 397 1.003262 CGTGGCACTGCAAATTTCCG 61.003 55.000 16.72 0.00 0.00 4.30
397 398 0.313672 GTGGCACTGCAAATTTCCGA 59.686 50.000 11.13 0.00 0.00 4.55
398 399 1.067635 GTGGCACTGCAAATTTCCGAT 60.068 47.619 11.13 0.00 0.00 4.18
399 400 2.163412 GTGGCACTGCAAATTTCCGATA 59.837 45.455 11.13 0.00 0.00 2.92
400 401 2.822561 TGGCACTGCAAATTTCCGATAA 59.177 40.909 2.82 0.00 0.00 1.75
401 402 3.256879 TGGCACTGCAAATTTCCGATAAA 59.743 39.130 2.82 0.00 0.00 1.40
402 403 3.859386 GGCACTGCAAATTTCCGATAAAG 59.141 43.478 2.82 0.00 0.00 1.85
403 404 4.380444 GGCACTGCAAATTTCCGATAAAGA 60.380 41.667 2.82 0.00 0.00 2.52
404 405 5.160641 GCACTGCAAATTTCCGATAAAGAA 58.839 37.500 0.00 0.00 0.00 2.52
405 406 5.287035 GCACTGCAAATTTCCGATAAAGAAG 59.713 40.000 0.00 0.00 0.00 2.85
406 407 5.287035 CACTGCAAATTTCCGATAAAGAAGC 59.713 40.000 0.00 0.00 0.00 3.86
407 408 5.048083 ACTGCAAATTTCCGATAAAGAAGCA 60.048 36.000 0.00 0.00 0.00 3.91
408 409 5.160641 TGCAAATTTCCGATAAAGAAGCAC 58.839 37.500 0.00 0.00 0.00 4.40
409 410 5.160641 GCAAATTTCCGATAAAGAAGCACA 58.839 37.500 0.00 0.00 0.00 4.57
410 411 5.807011 GCAAATTTCCGATAAAGAAGCACAT 59.193 36.000 0.00 0.00 0.00 3.21
411 412 6.972328 GCAAATTTCCGATAAAGAAGCACATA 59.028 34.615 0.00 0.00 0.00 2.29
412 413 7.649306 GCAAATTTCCGATAAAGAAGCACATAT 59.351 33.333 0.00 0.00 0.00 1.78
413 414 9.173939 CAAATTTCCGATAAAGAAGCACATATC 57.826 33.333 0.00 0.00 0.00 1.63
414 415 8.682936 AATTTCCGATAAAGAAGCACATATCT 57.317 30.769 0.00 0.00 0.00 1.98
415 416 9.778741 AATTTCCGATAAAGAAGCACATATCTA 57.221 29.630 0.00 0.00 0.00 1.98
416 417 8.589335 TTTCCGATAAAGAAGCACATATCTAC 57.411 34.615 0.00 0.00 0.00 2.59
417 418 7.526142 TCCGATAAAGAAGCACATATCTACT 57.474 36.000 0.00 0.00 0.00 2.57
418 419 7.952671 TCCGATAAAGAAGCACATATCTACTT 58.047 34.615 0.00 0.00 0.00 2.24
419 420 8.082852 TCCGATAAAGAAGCACATATCTACTTC 58.917 37.037 0.00 0.00 39.03 3.01
420 421 7.867909 CCGATAAAGAAGCACATATCTACTTCA 59.132 37.037 0.00 0.00 40.77 3.02
421 422 8.695284 CGATAAAGAAGCACATATCTACTTCAC 58.305 37.037 0.00 0.00 40.77 3.18
422 423 9.534565 GATAAAGAAGCACATATCTACTTCACA 57.465 33.333 0.00 0.00 40.77 3.58
423 424 7.602517 AAAGAAGCACATATCTACTTCACAC 57.397 36.000 0.00 0.00 40.77 3.82
424 425 5.344066 AGAAGCACATATCTACTTCACACG 58.656 41.667 0.00 0.00 40.77 4.49
425 426 4.720649 AGCACATATCTACTTCACACGT 57.279 40.909 0.00 0.00 0.00 4.49
426 427 4.424626 AGCACATATCTACTTCACACGTG 58.575 43.478 15.48 15.48 0.00 4.49
427 428 4.157840 AGCACATATCTACTTCACACGTGA 59.842 41.667 25.01 0.00 37.91 4.35
428 429 4.862574 GCACATATCTACTTCACACGTGAA 59.137 41.667 25.01 11.85 46.27 3.18
435 436 2.389386 TTCACACGTGAAGCACACC 58.611 52.632 25.01 0.00 43.90 4.16
436 437 1.092921 TTCACACGTGAAGCACACCC 61.093 55.000 25.01 0.00 43.90 4.61
437 438 1.523711 CACACGTGAAGCACACCCT 60.524 57.895 25.01 0.00 45.73 4.34
438 439 0.249699 CACACGTGAAGCACACCCTA 60.250 55.000 25.01 0.00 45.73 3.53
439 440 0.685097 ACACGTGAAGCACACCCTAT 59.315 50.000 25.01 0.00 45.73 2.57
440 441 1.078709 CACGTGAAGCACACCCTATG 58.921 55.000 10.90 0.35 45.73 2.23
441 442 0.673644 ACGTGAAGCACACCCTATGC 60.674 55.000 8.13 0.00 45.73 3.14
447 448 2.711711 GCACACCCTATGCTCCATG 58.288 57.895 0.00 0.00 40.08 3.66
448 449 0.181114 GCACACCCTATGCTCCATGA 59.819 55.000 0.00 0.00 40.08 3.07
449 450 1.408683 GCACACCCTATGCTCCATGAA 60.409 52.381 0.00 0.00 40.08 2.57
450 451 2.569059 CACACCCTATGCTCCATGAAG 58.431 52.381 0.00 0.00 0.00 3.02
451 452 2.171237 CACACCCTATGCTCCATGAAGA 59.829 50.000 0.00 0.00 0.00 2.87
452 453 2.846206 ACACCCTATGCTCCATGAAGAA 59.154 45.455 0.00 0.00 0.00 2.52
453 454 3.266772 ACACCCTATGCTCCATGAAGAAA 59.733 43.478 0.00 0.00 0.00 2.52
454 455 3.629398 CACCCTATGCTCCATGAAGAAAC 59.371 47.826 0.00 0.00 0.00 2.78
455 456 3.217626 CCCTATGCTCCATGAAGAAACC 58.782 50.000 0.00 0.00 0.00 3.27
456 457 3.217626 CCTATGCTCCATGAAGAAACCC 58.782 50.000 0.00 0.00 0.00 4.11
457 458 1.755179 ATGCTCCATGAAGAAACCCG 58.245 50.000 0.00 0.00 0.00 5.28
458 459 0.690192 TGCTCCATGAAGAAACCCGA 59.310 50.000 0.00 0.00 0.00 5.14
459 460 1.087501 GCTCCATGAAGAAACCCGAC 58.912 55.000 0.00 0.00 0.00 4.79
460 461 1.359848 CTCCATGAAGAAACCCGACG 58.640 55.000 0.00 0.00 0.00 5.12
461 462 0.970640 TCCATGAAGAAACCCGACGA 59.029 50.000 0.00 0.00 0.00 4.20
462 463 1.067142 TCCATGAAGAAACCCGACGAG 60.067 52.381 0.00 0.00 0.00 4.18
463 464 1.337823 CCATGAAGAAACCCGACGAGT 60.338 52.381 0.00 0.00 0.00 4.18
464 465 2.094390 CCATGAAGAAACCCGACGAGTA 60.094 50.000 0.00 0.00 0.00 2.59
465 466 3.179830 CATGAAGAAACCCGACGAGTAG 58.820 50.000 0.00 0.00 0.00 2.57
466 467 2.507484 TGAAGAAACCCGACGAGTAGA 58.493 47.619 0.00 0.00 0.00 2.59
467 468 2.227388 TGAAGAAACCCGACGAGTAGAC 59.773 50.000 0.00 0.00 0.00 2.59
468 469 2.197283 AGAAACCCGACGAGTAGACT 57.803 50.000 0.00 0.00 0.00 3.24
469 470 3.340814 AGAAACCCGACGAGTAGACTA 57.659 47.619 0.00 0.00 0.00 2.59
470 471 3.679389 AGAAACCCGACGAGTAGACTAA 58.321 45.455 0.00 0.00 0.00 2.24
471 472 4.074970 AGAAACCCGACGAGTAGACTAAA 58.925 43.478 0.00 0.00 0.00 1.85
472 473 4.520492 AGAAACCCGACGAGTAGACTAAAA 59.480 41.667 0.00 0.00 0.00 1.52
473 474 3.839051 ACCCGACGAGTAGACTAAAAC 57.161 47.619 0.00 0.00 0.00 2.43
474 475 3.149196 ACCCGACGAGTAGACTAAAACA 58.851 45.455 0.00 0.00 0.00 2.83
475 476 3.569701 ACCCGACGAGTAGACTAAAACAA 59.430 43.478 0.00 0.00 0.00 2.83
476 477 4.037923 ACCCGACGAGTAGACTAAAACAAA 59.962 41.667 0.00 0.00 0.00 2.83
477 478 4.984161 CCCGACGAGTAGACTAAAACAAAA 59.016 41.667 0.00 0.00 0.00 2.44
478 479 5.118203 CCCGACGAGTAGACTAAAACAAAAG 59.882 44.000 0.00 0.00 0.00 2.27
479 480 5.118203 CCGACGAGTAGACTAAAACAAAAGG 59.882 44.000 0.00 0.00 0.00 3.11
480 481 5.916883 CGACGAGTAGACTAAAACAAAAGGA 59.083 40.000 0.00 0.00 0.00 3.36
481 482 6.087820 CGACGAGTAGACTAAAACAAAAGGAG 59.912 42.308 0.00 0.00 0.00 3.69
482 483 7.047460 ACGAGTAGACTAAAACAAAAGGAGA 57.953 36.000 0.00 0.00 0.00 3.71
483 484 7.495055 ACGAGTAGACTAAAACAAAAGGAGAA 58.505 34.615 0.00 0.00 0.00 2.87
484 485 7.983484 ACGAGTAGACTAAAACAAAAGGAGAAA 59.017 33.333 0.00 0.00 0.00 2.52
485 486 8.823818 CGAGTAGACTAAAACAAAAGGAGAAAA 58.176 33.333 0.00 0.00 0.00 2.29
521 522 6.830114 AAAACAAAGAAACAAAACGTCACA 57.170 29.167 0.00 0.00 0.00 3.58
522 523 6.830114 AAACAAAGAAACAAAACGTCACAA 57.170 29.167 0.00 0.00 0.00 3.33
523 524 6.446659 AACAAAGAAACAAAACGTCACAAG 57.553 33.333 0.00 0.00 0.00 3.16
524 525 4.920927 ACAAAGAAACAAAACGTCACAAGG 59.079 37.500 0.00 0.00 0.00 3.61
525 526 5.157781 CAAAGAAACAAAACGTCACAAGGA 58.842 37.500 0.00 0.00 0.00 3.36
526 527 4.616181 AGAAACAAAACGTCACAAGGAG 57.384 40.909 0.00 0.00 0.00 3.69
527 528 4.258543 AGAAACAAAACGTCACAAGGAGA 58.741 39.130 0.00 0.00 0.00 3.71
528 529 4.698304 AGAAACAAAACGTCACAAGGAGAA 59.302 37.500 0.00 0.00 0.00 2.87
529 530 5.182380 AGAAACAAAACGTCACAAGGAGAAA 59.818 36.000 0.00 0.00 0.00 2.52
530 531 5.379732 AACAAAACGTCACAAGGAGAAAA 57.620 34.783 0.00 0.00 0.00 2.29
531 532 4.981794 ACAAAACGTCACAAGGAGAAAAG 58.018 39.130 0.00 0.00 0.00 2.27
532 533 4.457949 ACAAAACGTCACAAGGAGAAAAGT 59.542 37.500 0.00 0.00 0.00 2.66
533 534 4.616181 AAACGTCACAAGGAGAAAAGTG 57.384 40.909 0.00 0.00 0.00 3.16
534 535 3.261981 ACGTCACAAGGAGAAAAGTGT 57.738 42.857 0.00 0.00 33.84 3.55
535 536 3.606687 ACGTCACAAGGAGAAAAGTGTT 58.393 40.909 0.00 0.00 33.84 3.32
536 537 4.007659 ACGTCACAAGGAGAAAAGTGTTT 58.992 39.130 0.00 0.00 33.84 2.83
537 538 4.142687 ACGTCACAAGGAGAAAAGTGTTTG 60.143 41.667 0.00 0.00 33.84 2.93
538 539 4.105486 GTCACAAGGAGAAAAGTGTTTGC 58.895 43.478 0.00 0.00 33.84 3.68
539 540 3.130340 TCACAAGGAGAAAAGTGTTTGCC 59.870 43.478 0.00 0.00 33.84 4.52
540 541 3.096092 ACAAGGAGAAAAGTGTTTGCCA 58.904 40.909 0.00 0.00 0.00 4.92
541 542 3.706086 ACAAGGAGAAAAGTGTTTGCCAT 59.294 39.130 0.00 0.00 0.00 4.40
542 543 4.053295 CAAGGAGAAAAGTGTTTGCCATG 58.947 43.478 0.00 0.00 0.00 3.66
543 544 2.036346 AGGAGAAAAGTGTTTGCCATGC 59.964 45.455 0.00 0.00 0.00 4.06
544 545 2.053627 GAGAAAAGTGTTTGCCATGCG 58.946 47.619 0.00 0.00 0.00 4.73
545 546 1.680735 AGAAAAGTGTTTGCCATGCGA 59.319 42.857 0.00 0.00 0.00 5.10
546 547 1.786579 GAAAAGTGTTTGCCATGCGAC 59.213 47.619 0.00 0.00 0.00 5.19
547 548 0.743688 AAAGTGTTTGCCATGCGACA 59.256 45.000 0.00 0.00 0.00 4.35
548 549 0.030638 AAGTGTTTGCCATGCGACAC 59.969 50.000 14.05 14.05 43.46 3.67
549 550 1.725625 GTGTTTGCCATGCGACACG 60.726 57.895 8.92 0.00 38.01 4.49
550 551 2.183504 TGTTTGCCATGCGACACGT 61.184 52.632 0.00 0.00 0.00 4.49
551 552 1.725625 GTTTGCCATGCGACACGTG 60.726 57.895 15.48 15.48 34.83 4.49
556 557 4.428922 CATGCGACACGTGGCACG 62.429 66.667 35.89 35.89 46.56 5.34
570 571 3.849951 CACGCTAGCCCCACGGAT 61.850 66.667 9.66 0.00 0.00 4.18
571 572 3.849951 ACGCTAGCCCCACGGATG 61.850 66.667 9.66 0.00 0.00 3.51
572 573 4.609018 CGCTAGCCCCACGGATGG 62.609 72.222 9.66 0.00 46.81 3.51
573 574 4.937431 GCTAGCCCCACGGATGGC 62.937 72.222 2.29 3.42 45.31 4.40
578 579 4.127744 CCCCACGGATGGCACCAT 62.128 66.667 0.66 0.66 45.76 3.55
579 580 2.044053 CCCACGGATGGCACCATT 60.044 61.111 3.16 0.00 45.76 3.16
580 581 2.120909 CCCACGGATGGCACCATTC 61.121 63.158 3.16 0.00 45.76 2.67
581 582 1.378382 CCACGGATGGCACCATTCA 60.378 57.895 8.67 0.00 39.82 2.57
582 583 1.378882 CCACGGATGGCACCATTCAG 61.379 60.000 8.67 3.95 39.82 3.02
583 584 1.750399 ACGGATGGCACCATTCAGC 60.750 57.895 8.67 0.00 36.70 4.26
584 585 1.452651 CGGATGGCACCATTCAGCT 60.453 57.895 8.67 0.00 36.70 4.24
585 586 1.442526 CGGATGGCACCATTCAGCTC 61.443 60.000 8.67 0.00 36.70 4.09
586 587 0.394762 GGATGGCACCATTCAGCTCA 60.395 55.000 3.16 0.00 36.70 4.26
587 588 1.022735 GATGGCACCATTCAGCTCAG 58.977 55.000 3.16 0.00 36.70 3.35
588 589 0.622136 ATGGCACCATTCAGCTCAGA 59.378 50.000 0.00 0.00 31.82 3.27
589 590 0.401356 TGGCACCATTCAGCTCAGAA 59.599 50.000 0.00 0.00 0.00 3.02
590 591 1.202915 TGGCACCATTCAGCTCAGAAA 60.203 47.619 0.00 0.00 0.00 2.52
591 592 1.888512 GGCACCATTCAGCTCAGAAAA 59.111 47.619 0.00 0.00 0.00 2.29
592 593 2.297033 GGCACCATTCAGCTCAGAAAAA 59.703 45.455 0.00 0.00 0.00 1.94
593 594 3.572584 GCACCATTCAGCTCAGAAAAAG 58.427 45.455 0.00 0.00 0.00 2.27
594 595 3.613432 GCACCATTCAGCTCAGAAAAAGG 60.613 47.826 0.00 0.00 0.00 3.11
595 596 3.822735 CACCATTCAGCTCAGAAAAAGGA 59.177 43.478 9.05 0.00 0.00 3.36
596 597 3.823304 ACCATTCAGCTCAGAAAAAGGAC 59.177 43.478 9.05 0.00 0.00 3.85
597 598 3.120060 CCATTCAGCTCAGAAAAAGGACG 60.120 47.826 0.00 0.00 0.00 4.79
598 599 3.469008 TTCAGCTCAGAAAAAGGACGA 57.531 42.857 0.00 0.00 0.00 4.20
599 600 3.032017 TCAGCTCAGAAAAAGGACGAG 57.968 47.619 0.00 0.00 0.00 4.18
600 601 2.628178 TCAGCTCAGAAAAAGGACGAGA 59.372 45.455 0.00 0.00 0.00 4.04
601 602 2.992543 CAGCTCAGAAAAAGGACGAGAG 59.007 50.000 0.00 0.00 0.00 3.20
602 603 2.028567 AGCTCAGAAAAAGGACGAGAGG 60.029 50.000 0.00 0.00 0.00 3.69
603 604 2.933056 GCTCAGAAAAAGGACGAGAGGG 60.933 54.545 0.00 0.00 0.00 4.30
604 605 1.623811 TCAGAAAAAGGACGAGAGGGG 59.376 52.381 0.00 0.00 0.00 4.79
605 606 1.623811 CAGAAAAAGGACGAGAGGGGA 59.376 52.381 0.00 0.00 0.00 4.81
606 607 1.903183 AGAAAAAGGACGAGAGGGGAG 59.097 52.381 0.00 0.00 0.00 4.30
607 608 1.900486 GAAAAAGGACGAGAGGGGAGA 59.100 52.381 0.00 0.00 0.00 3.71
608 609 2.025636 AAAAGGACGAGAGGGGAGAA 57.974 50.000 0.00 0.00 0.00 2.87
609 610 2.025636 AAAGGACGAGAGGGGAGAAA 57.974 50.000 0.00 0.00 0.00 2.52
610 611 2.255770 AAGGACGAGAGGGGAGAAAT 57.744 50.000 0.00 0.00 0.00 2.17
611 612 1.490574 AGGACGAGAGGGGAGAAATG 58.509 55.000 0.00 0.00 0.00 2.32
612 613 0.179070 GGACGAGAGGGGAGAAATGC 60.179 60.000 0.00 0.00 0.00 3.56
613 614 0.827368 GACGAGAGGGGAGAAATGCT 59.173 55.000 0.00 0.00 0.00 3.79
614 615 1.208293 GACGAGAGGGGAGAAATGCTT 59.792 52.381 0.00 0.00 0.00 3.91
615 616 1.065854 ACGAGAGGGGAGAAATGCTTG 60.066 52.381 0.00 0.00 0.00 4.01
616 617 1.745141 CGAGAGGGGAGAAATGCTTGG 60.745 57.143 0.00 0.00 0.00 3.61
617 618 1.283321 GAGAGGGGAGAAATGCTTGGT 59.717 52.381 0.00 0.00 0.00 3.67
618 619 2.505819 GAGAGGGGAGAAATGCTTGGTA 59.494 50.000 0.00 0.00 0.00 3.25
619 620 2.239907 AGAGGGGAGAAATGCTTGGTAC 59.760 50.000 0.00 0.00 0.00 3.34
620 621 2.239907 GAGGGGAGAAATGCTTGGTACT 59.760 50.000 0.00 0.00 0.00 2.73
621 622 2.649816 AGGGGAGAAATGCTTGGTACTT 59.350 45.455 0.00 0.00 0.00 2.24
622 623 3.017442 GGGGAGAAATGCTTGGTACTTC 58.983 50.000 0.00 0.00 0.00 3.01
623 624 3.017442 GGGAGAAATGCTTGGTACTTCC 58.983 50.000 0.00 0.00 0.00 3.46
624 625 3.308473 GGGAGAAATGCTTGGTACTTCCT 60.308 47.826 0.00 0.00 37.07 3.36
625 626 4.336280 GGAGAAATGCTTGGTACTTCCTT 58.664 43.478 0.00 0.00 37.07 3.36
626 627 4.767409 GGAGAAATGCTTGGTACTTCCTTT 59.233 41.667 0.00 0.00 37.07 3.11
627 628 5.944007 GGAGAAATGCTTGGTACTTCCTTTA 59.056 40.000 0.00 0.00 37.07 1.85
628 629 6.094186 GGAGAAATGCTTGGTACTTCCTTTAG 59.906 42.308 0.00 0.00 37.07 1.85
629 630 6.779860 AGAAATGCTTGGTACTTCCTTTAGA 58.220 36.000 0.00 0.00 37.07 2.10
630 631 7.406104 AGAAATGCTTGGTACTTCCTTTAGAT 58.594 34.615 0.00 0.00 37.07 1.98
631 632 7.554476 AGAAATGCTTGGTACTTCCTTTAGATC 59.446 37.037 0.00 0.00 37.07 2.75
632 633 5.755409 TGCTTGGTACTTCCTTTAGATCA 57.245 39.130 0.00 0.00 37.07 2.92
633 634 5.488341 TGCTTGGTACTTCCTTTAGATCAC 58.512 41.667 0.00 0.00 37.07 3.06
634 635 5.248477 TGCTTGGTACTTCCTTTAGATCACT 59.752 40.000 0.00 0.00 37.07 3.41
635 636 6.439375 TGCTTGGTACTTCCTTTAGATCACTA 59.561 38.462 0.00 0.00 37.07 2.74
636 637 7.038587 TGCTTGGTACTTCCTTTAGATCACTAA 60.039 37.037 0.00 0.00 36.90 2.24
637 638 7.822822 GCTTGGTACTTCCTTTAGATCACTAAA 59.177 37.037 0.00 0.00 43.52 1.85
638 639 9.720769 CTTGGTACTTCCTTTAGATCACTAAAA 57.279 33.333 0.00 0.00 44.54 1.52
639 640 9.498176 TTGGTACTTCCTTTAGATCACTAAAAC 57.502 33.333 0.00 0.00 44.54 2.43
640 641 8.877195 TGGTACTTCCTTTAGATCACTAAAACT 58.123 33.333 0.00 0.00 44.54 2.66
697 698 5.977489 CCTTTTTAAGGGAGGACGAAAAT 57.023 39.130 0.00 0.00 45.27 1.82
698 699 5.709966 CCTTTTTAAGGGAGGACGAAAATG 58.290 41.667 0.00 0.00 45.27 2.32
699 700 5.475564 CCTTTTTAAGGGAGGACGAAAATGA 59.524 40.000 0.00 0.00 45.27 2.57
700 701 6.152831 CCTTTTTAAGGGAGGACGAAAATGAT 59.847 38.462 0.00 0.00 45.27 2.45
701 702 7.309805 CCTTTTTAAGGGAGGACGAAAATGATT 60.310 37.037 0.00 0.00 45.27 2.57
702 703 6.509418 TTTAAGGGAGGACGAAAATGATTG 57.491 37.500 0.00 0.00 0.00 2.67
703 704 4.301072 AAGGGAGGACGAAAATGATTGA 57.699 40.909 0.00 0.00 0.00 2.57
704 705 4.510167 AGGGAGGACGAAAATGATTGAT 57.490 40.909 0.00 0.00 0.00 2.57
705 706 5.630415 AGGGAGGACGAAAATGATTGATA 57.370 39.130 0.00 0.00 0.00 2.15
706 707 6.192970 AGGGAGGACGAAAATGATTGATAT 57.807 37.500 0.00 0.00 0.00 1.63
707 708 7.316393 AGGGAGGACGAAAATGATTGATATA 57.684 36.000 0.00 0.00 0.00 0.86
708 709 7.922382 AGGGAGGACGAAAATGATTGATATAT 58.078 34.615 0.00 0.00 0.00 0.86
709 710 8.386264 AGGGAGGACGAAAATGATTGATATATT 58.614 33.333 0.00 0.00 0.00 1.28
710 711 9.014297 GGGAGGACGAAAATGATTGATATATTT 57.986 33.333 0.00 0.00 0.00 1.40
732 733 8.707938 ATTTTTCAGGAAAGTTGTTCTCTTTG 57.292 30.769 0.00 0.00 35.62 2.77
733 734 6.834168 TTTCAGGAAAGTTGTTCTCTTTGT 57.166 33.333 0.00 0.00 35.62 2.83
745 746 6.494893 TGTTCTCTTTGTATGATTTTCGGG 57.505 37.500 0.00 0.00 0.00 5.14
749 750 5.354234 TCTCTTTGTATGATTTTCGGGAAGC 59.646 40.000 0.00 0.00 0.00 3.86
751 752 4.963276 TTGTATGATTTTCGGGAAGCTG 57.037 40.909 0.00 0.00 0.00 4.24
809 811 1.857364 GGTCGTACGCCACAACTTG 59.143 57.895 19.50 0.00 0.00 3.16
810 812 0.877213 GGTCGTACGCCACAACTTGT 60.877 55.000 19.50 0.00 0.00 3.16
845 848 2.137177 ATACGCAGGGCCCAACAGTT 62.137 55.000 27.56 5.11 0.00 3.16
859 862 0.540365 ACAGTTCATGGGCCCAACAG 60.540 55.000 32.58 21.75 0.00 3.16
869 872 5.960811 TCATGGGCCCAACAGATTAAAATAA 59.039 36.000 32.58 0.00 0.00 1.40
870 873 6.441924 TCATGGGCCCAACAGATTAAAATAAA 59.558 34.615 32.58 0.00 0.00 1.40
871 874 6.882768 TGGGCCCAACAGATTAAAATAAAT 57.117 33.333 26.33 0.00 0.00 1.40
872 875 7.979786 TGGGCCCAACAGATTAAAATAAATA 57.020 32.000 26.33 0.00 0.00 1.40
873 876 8.560124 TGGGCCCAACAGATTAAAATAAATAT 57.440 30.769 26.33 0.00 0.00 1.28
874 877 8.997734 TGGGCCCAACAGATTAAAATAAATATT 58.002 29.630 26.33 0.00 0.00 1.28
875 878 9.489084 GGGCCCAACAGATTAAAATAAATATTC 57.511 33.333 19.95 0.00 0.00 1.75
876 879 9.191995 GGCCCAACAGATTAAAATAAATATTCG 57.808 33.333 0.00 0.00 0.00 3.34
877 880 9.959749 GCCCAACAGATTAAAATAAATATTCGA 57.040 29.630 0.00 0.00 0.00 3.71
893 896 1.136147 CGAGTACGAACTGGACCGG 59.864 63.158 0.00 0.00 42.66 5.28
907 910 0.108041 GACCGGATACCGCCAAAAGA 60.108 55.000 9.46 0.00 46.86 2.52
908 911 0.107848 ACCGGATACCGCCAAAAGAG 60.108 55.000 9.46 0.00 46.86 2.85
965 973 1.587054 CGTCCACTCCCTCACTCAC 59.413 63.158 0.00 0.00 0.00 3.51
966 974 0.896019 CGTCCACTCCCTCACTCACT 60.896 60.000 0.00 0.00 0.00 3.41
967 975 0.892063 GTCCACTCCCTCACTCACTC 59.108 60.000 0.00 0.00 0.00 3.51
968 976 0.482887 TCCACTCCCTCACTCACTCA 59.517 55.000 0.00 0.00 0.00 3.41
969 977 0.605589 CCACTCCCTCACTCACTCAC 59.394 60.000 0.00 0.00 0.00 3.51
970 978 0.605589 CACTCCCTCACTCACTCACC 59.394 60.000 0.00 0.00 0.00 4.02
971 979 0.896019 ACTCCCTCACTCACTCACCG 60.896 60.000 0.00 0.00 0.00 4.94
972 980 1.599606 CTCCCTCACTCACTCACCGG 61.600 65.000 0.00 0.00 0.00 5.28
1042 1050 2.263852 CGCTTCTGCTGCTCCTGA 59.736 61.111 0.00 0.00 36.97 3.86
1044 1052 1.429927 CGCTTCTGCTGCTCCTGATG 61.430 60.000 0.00 0.00 36.97 3.07
1833 1841 3.220999 CTTCGACCTCACCGGCACA 62.221 63.158 0.00 0.00 35.61 4.57
2088 2096 1.606885 GGGTGCCCACAATGATGGTG 61.607 60.000 1.66 0.00 38.16 4.17
2361 2371 6.341316 TGGCAGATTTATAGTCAGAGTTCAC 58.659 40.000 0.00 0.00 0.00 3.18
2362 2372 6.155221 TGGCAGATTTATAGTCAGAGTTCACT 59.845 38.462 0.00 0.00 0.00 3.41
2363 2373 7.044798 GGCAGATTTATAGTCAGAGTTCACTT 58.955 38.462 0.00 0.00 0.00 3.16
2364 2374 8.198109 GGCAGATTTATAGTCAGAGTTCACTTA 58.802 37.037 0.00 0.00 0.00 2.24
2365 2375 9.587772 GCAGATTTATAGTCAGAGTTCACTTAA 57.412 33.333 0.00 0.00 0.00 1.85
2454 2499 8.937207 TTGGATCCTCTCTACTTAATACTACC 57.063 38.462 14.23 0.00 0.00 3.18
2504 2549 5.983720 GGGAATTCATTTCAGCAGAATCATG 59.016 40.000 7.93 0.00 35.94 3.07
2555 2601 9.618890 ATGCTCTCTACATAATTTGAAGCTTAA 57.381 29.630 0.00 0.00 0.00 1.85
2556 2602 9.448438 TGCTCTCTACATAATTTGAAGCTTAAA 57.552 29.630 0.00 0.00 0.00 1.52
2630 2676 6.541641 ACTTAATTTGGATGCTCTCTGCTTAG 59.458 38.462 0.00 0.00 43.37 2.18
2701 2747 5.801531 TTACAGAGACTTTGCCAGAAGTA 57.198 39.130 0.00 0.00 39.84 2.24
2719 2765 5.998363 AGAAGTACCATTTGAGAGAACAACC 59.002 40.000 0.00 0.00 0.00 3.77
2731 2777 1.133915 AGAACAACCCCAGCGAAAGAA 60.134 47.619 0.00 0.00 0.00 2.52
2813 2859 3.610821 CGACTACATGTTGACGAGTTCCA 60.611 47.826 22.34 0.00 31.68 3.53
2896 2942 1.780503 AAGGTTTTCTGCAGGCAAGT 58.219 45.000 15.13 0.00 0.00 3.16
2975 3021 5.364446 TCTTTGACAAGTAAGAGTACCACCA 59.636 40.000 0.00 0.00 0.00 4.17
2995 3041 7.827729 ACCACCACAAGTCCTTAATTAGATAAC 59.172 37.037 0.00 0.00 0.00 1.89
3023 3069 3.936564 GCTTAGCAAGGCTAGCATCTAT 58.063 45.455 18.24 1.11 42.34 1.98
3024 3070 3.683822 GCTTAGCAAGGCTAGCATCTATG 59.316 47.826 18.24 11.05 42.34 2.23
3325 3391 7.962964 TTAGTTTATTGTTCACTGAGACTGG 57.037 36.000 0.00 0.00 0.00 4.00
3387 3453 9.575868 TTATTTTAGAGTGGACATTGTTTGGTA 57.424 29.630 0.00 0.00 0.00 3.25
3500 3574 3.470645 TCTGTGAGCATGATCATCTGG 57.529 47.619 17.94 7.84 0.00 3.86
3548 3622 3.275228 AGGGGGAATCAGGAGTAGTAACT 59.725 47.826 0.00 0.00 39.21 2.24
3549 3623 4.485021 AGGGGGAATCAGGAGTAGTAACTA 59.515 45.833 0.00 0.00 35.56 2.24
3550 3624 4.833938 GGGGGAATCAGGAGTAGTAACTAG 59.166 50.000 0.00 0.00 35.56 2.57
3652 3726 1.141657 GCCTTCATGATACAGCCCTGA 59.858 52.381 0.00 0.00 0.00 3.86
3658 3732 1.216064 TGATACAGCCCTGATTGCCT 58.784 50.000 1.69 0.00 0.00 4.75
3661 3735 2.936919 TACAGCCCTGATTGCCTATG 57.063 50.000 1.69 0.00 0.00 2.23
3664 3738 2.105477 ACAGCCCTGATTGCCTATGTAG 59.895 50.000 1.69 0.00 0.00 2.74
3778 3852 0.608130 GGGGACAATTGTCTTTGGGC 59.392 55.000 31.81 17.39 44.20 5.36
3802 3876 3.799432 TGGTTACCTATGGTGCTTTGT 57.201 42.857 2.07 0.00 36.19 2.83
3803 3877 3.417101 TGGTTACCTATGGTGCTTTGTG 58.583 45.455 2.07 0.00 36.19 3.33
3838 3912 7.055667 TGTTCACTGAGAAAGTTAGACTGAT 57.944 36.000 0.00 0.00 36.83 2.90
3850 3924 4.163078 AGTTAGACTGATTGGAGGGATGTG 59.837 45.833 0.00 0.00 0.00 3.21
3883 3957 8.562892 CAAGTTATGGACATAATCAAGCTTAGG 58.437 37.037 0.00 0.00 35.90 2.69
3977 4051 4.338964 TCTCAATGTTTCTTCTGCAAAGCA 59.661 37.500 0.00 0.00 36.92 3.91
3978 4052 5.010314 TCTCAATGTTTCTTCTGCAAAGCAT 59.990 36.000 0.00 0.00 38.13 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.469807 TGCGAATATGAAAACACAACTTAATTT 57.530 25.926 0.00 0.00 0.00 1.82
6 7 9.638239 ATGCGAATATGAAAACACAACTTAATT 57.362 25.926 0.00 0.00 0.00 1.40
7 8 9.638239 AATGCGAATATGAAAACACAACTTAAT 57.362 25.926 0.00 0.00 0.00 1.40
8 9 9.469807 AAATGCGAATATGAAAACACAACTTAA 57.530 25.926 0.00 0.00 0.00 1.85
9 10 9.123709 GAAATGCGAATATGAAAACACAACTTA 57.876 29.630 0.00 0.00 0.00 2.24
10 11 7.867403 AGAAATGCGAATATGAAAACACAACTT 59.133 29.630 0.00 0.00 0.00 2.66
11 12 7.370383 AGAAATGCGAATATGAAAACACAACT 58.630 30.769 0.00 0.00 0.00 3.16
12 13 7.460120 CGAGAAATGCGAATATGAAAACACAAC 60.460 37.037 0.00 0.00 0.00 3.32
13 14 6.522855 CGAGAAATGCGAATATGAAAACACAA 59.477 34.615 0.00 0.00 0.00 3.33
14 15 6.020984 CGAGAAATGCGAATATGAAAACACA 58.979 36.000 0.00 0.00 0.00 3.72
15 16 6.021596 ACGAGAAATGCGAATATGAAAACAC 58.978 36.000 0.00 0.00 0.00 3.32
16 17 6.020984 CACGAGAAATGCGAATATGAAAACA 58.979 36.000 0.00 0.00 0.00 2.83
17 18 6.192863 GTCACGAGAAATGCGAATATGAAAAC 59.807 38.462 0.00 0.00 0.00 2.43
18 19 6.247903 GTCACGAGAAATGCGAATATGAAAA 58.752 36.000 0.00 0.00 0.00 2.29
19 20 5.220586 GGTCACGAGAAATGCGAATATGAAA 60.221 40.000 0.00 0.00 0.00 2.69
20 21 4.270084 GGTCACGAGAAATGCGAATATGAA 59.730 41.667 0.00 0.00 0.00 2.57
21 22 3.802139 GGTCACGAGAAATGCGAATATGA 59.198 43.478 0.00 0.00 0.00 2.15
22 23 3.555547 TGGTCACGAGAAATGCGAATATG 59.444 43.478 0.00 0.00 0.00 1.78
23 24 3.792401 TGGTCACGAGAAATGCGAATAT 58.208 40.909 0.00 0.00 0.00 1.28
24 25 3.239587 TGGTCACGAGAAATGCGAATA 57.760 42.857 0.00 0.00 0.00 1.75
25 26 2.093306 TGGTCACGAGAAATGCGAAT 57.907 45.000 0.00 0.00 0.00 3.34
26 27 1.529438 GTTGGTCACGAGAAATGCGAA 59.471 47.619 0.00 0.00 0.00 4.70
27 28 1.144969 GTTGGTCACGAGAAATGCGA 58.855 50.000 0.00 0.00 0.00 5.10
28 29 1.126846 GAGTTGGTCACGAGAAATGCG 59.873 52.381 0.00 0.00 0.00 4.73
29 30 2.417719 AGAGTTGGTCACGAGAAATGC 58.582 47.619 0.00 0.00 0.00 3.56
30 31 4.511454 TCAAAGAGTTGGTCACGAGAAATG 59.489 41.667 0.00 0.00 35.29 2.32
31 32 4.703897 TCAAAGAGTTGGTCACGAGAAAT 58.296 39.130 0.00 0.00 35.29 2.17
32 33 4.131649 TCAAAGAGTTGGTCACGAGAAA 57.868 40.909 0.00 0.00 35.29 2.52
33 34 3.812156 TCAAAGAGTTGGTCACGAGAA 57.188 42.857 0.00 0.00 35.29 2.87
34 35 3.812156 TTCAAAGAGTTGGTCACGAGA 57.188 42.857 0.00 0.00 35.29 4.04
35 36 6.423905 TCTTATTTCAAAGAGTTGGTCACGAG 59.576 38.462 0.00 0.00 35.29 4.18
36 37 6.285224 TCTTATTTCAAAGAGTTGGTCACGA 58.715 36.000 0.00 0.00 35.29 4.35
37 38 6.539649 TCTTATTTCAAAGAGTTGGTCACG 57.460 37.500 0.00 0.00 35.29 4.35
38 39 7.139392 GGTTCTTATTTCAAAGAGTTGGTCAC 58.861 38.462 0.00 0.00 36.85 3.67
39 40 6.831353 TGGTTCTTATTTCAAAGAGTTGGTCA 59.169 34.615 0.00 0.00 36.85 4.02
40 41 7.272037 TGGTTCTTATTTCAAAGAGTTGGTC 57.728 36.000 0.00 0.00 36.85 4.02
41 42 7.839680 ATGGTTCTTATTTCAAAGAGTTGGT 57.160 32.000 0.00 0.00 36.85 3.67
42 43 9.546428 AAAATGGTTCTTATTTCAAAGAGTTGG 57.454 29.630 0.00 0.00 36.85 3.77
107 108 9.099820 GCTCGTACTAAGTTTCAACATTAAAAC 57.900 33.333 0.00 0.00 35.97 2.43
108 109 8.005466 CGCTCGTACTAAGTTTCAACATTAAAA 58.995 33.333 0.00 0.00 0.00 1.52
109 110 7.359431 CCGCTCGTACTAAGTTTCAACATTAAA 60.359 37.037 0.00 0.00 0.00 1.52
110 111 6.089820 CCGCTCGTACTAAGTTTCAACATTAA 59.910 38.462 0.00 0.00 0.00 1.40
111 112 5.574055 CCGCTCGTACTAAGTTTCAACATTA 59.426 40.000 0.00 0.00 0.00 1.90
112 113 4.387862 CCGCTCGTACTAAGTTTCAACATT 59.612 41.667 0.00 0.00 0.00 2.71
113 114 3.924686 CCGCTCGTACTAAGTTTCAACAT 59.075 43.478 0.00 0.00 0.00 2.71
114 115 3.243501 ACCGCTCGTACTAAGTTTCAACA 60.244 43.478 0.00 0.00 0.00 3.33
115 116 3.311966 ACCGCTCGTACTAAGTTTCAAC 58.688 45.455 0.00 0.00 0.00 3.18
116 117 3.568538 GACCGCTCGTACTAAGTTTCAA 58.431 45.455 0.00 0.00 0.00 2.69
117 118 2.413239 CGACCGCTCGTACTAAGTTTCA 60.413 50.000 0.00 0.00 35.00 2.69
118 119 2.159653 TCGACCGCTCGTACTAAGTTTC 60.160 50.000 0.00 0.00 41.02 2.78
119 120 1.806542 TCGACCGCTCGTACTAAGTTT 59.193 47.619 0.00 0.00 41.02 2.66
120 121 1.442769 TCGACCGCTCGTACTAAGTT 58.557 50.000 0.00 0.00 41.02 2.66
121 122 1.661341 ATCGACCGCTCGTACTAAGT 58.339 50.000 0.00 0.00 41.02 2.24
122 123 3.867055 TTATCGACCGCTCGTACTAAG 57.133 47.619 0.00 0.00 41.02 2.18
123 124 4.614555 TTTTATCGACCGCTCGTACTAA 57.385 40.909 0.00 0.00 41.02 2.24
124 125 4.614555 TTTTTATCGACCGCTCGTACTA 57.385 40.909 0.00 0.00 41.02 1.82
125 126 3.492421 TTTTTATCGACCGCTCGTACT 57.508 42.857 0.00 0.00 41.02 2.73
160 161 6.013984 AGGTAATTTTTCCTCTTGGTCGTAGA 60.014 38.462 0.00 0.00 34.23 2.59
161 162 6.171213 AGGTAATTTTTCCTCTTGGTCGTAG 58.829 40.000 0.00 0.00 34.23 3.51
162 163 6.117975 AGGTAATTTTTCCTCTTGGTCGTA 57.882 37.500 0.00 0.00 34.23 3.43
163 164 4.981812 AGGTAATTTTTCCTCTTGGTCGT 58.018 39.130 0.00 0.00 34.23 4.34
164 165 7.443259 TTTAGGTAATTTTTCCTCTTGGTCG 57.557 36.000 0.00 0.00 35.51 4.79
193 194 8.303876 GCCCAATTTCAACAAGTTTTAGAGATA 58.696 33.333 0.00 0.00 0.00 1.98
194 195 7.154656 GCCCAATTTCAACAAGTTTTAGAGAT 58.845 34.615 0.00 0.00 0.00 2.75
195 196 6.097554 TGCCCAATTTCAACAAGTTTTAGAGA 59.902 34.615 0.00 0.00 0.00 3.10
196 197 6.279882 TGCCCAATTTCAACAAGTTTTAGAG 58.720 36.000 0.00 0.00 0.00 2.43
197 198 6.227298 TGCCCAATTTCAACAAGTTTTAGA 57.773 33.333 0.00 0.00 0.00 2.10
198 199 7.495135 AATGCCCAATTTCAACAAGTTTTAG 57.505 32.000 0.00 0.00 0.00 1.85
199 200 7.872113 AAATGCCCAATTTCAACAAGTTTTA 57.128 28.000 0.00 0.00 32.85 1.52
200 201 6.772360 AAATGCCCAATTTCAACAAGTTTT 57.228 29.167 0.00 0.00 32.85 2.43
201 202 6.772360 AAAATGCCCAATTTCAACAAGTTT 57.228 29.167 0.00 0.00 37.51 2.66
202 203 6.772360 AAAAATGCCCAATTTCAACAAGTT 57.228 29.167 0.00 0.00 37.51 2.66
203 204 7.278875 TCTAAAAATGCCCAATTTCAACAAGT 58.721 30.769 0.00 0.00 37.51 3.16
204 205 7.727331 TCTAAAAATGCCCAATTTCAACAAG 57.273 32.000 0.00 0.00 37.51 3.16
205 206 7.308469 GCATCTAAAAATGCCCAATTTCAACAA 60.308 33.333 0.00 0.00 45.07 2.83
206 207 6.149142 GCATCTAAAAATGCCCAATTTCAACA 59.851 34.615 0.00 0.00 45.07 3.33
207 208 6.545508 GCATCTAAAAATGCCCAATTTCAAC 58.454 36.000 0.00 0.00 45.07 3.18
208 209 6.740411 GCATCTAAAAATGCCCAATTTCAA 57.260 33.333 0.00 0.00 45.07 2.69
225 226 9.575783 GGATAAAATTTACGGTTTTTGCATCTA 57.424 29.630 0.00 0.00 31.71 1.98
226 227 8.311109 AGGATAAAATTTACGGTTTTTGCATCT 58.689 29.630 0.00 0.00 31.71 2.90
227 228 8.474006 AGGATAAAATTTACGGTTTTTGCATC 57.526 30.769 0.00 0.00 31.71 3.91
228 229 8.716909 CAAGGATAAAATTTACGGTTTTTGCAT 58.283 29.630 0.00 0.00 31.71 3.96
229 230 7.926555 TCAAGGATAAAATTTACGGTTTTTGCA 59.073 29.630 0.00 0.00 31.71 4.08
230 231 8.300495 TCAAGGATAAAATTTACGGTTTTTGC 57.700 30.769 0.00 0.00 31.71 3.68
279 280 3.366724 CACGCACGAGAGCATAGTAAAAA 59.633 43.478 0.00 0.00 0.00 1.94
280 281 2.921121 CACGCACGAGAGCATAGTAAAA 59.079 45.455 0.00 0.00 0.00 1.52
281 282 2.162809 TCACGCACGAGAGCATAGTAAA 59.837 45.455 0.00 0.00 0.00 2.01
282 283 1.741145 TCACGCACGAGAGCATAGTAA 59.259 47.619 0.00 0.00 0.00 2.24
283 284 1.375551 TCACGCACGAGAGCATAGTA 58.624 50.000 0.00 0.00 0.00 1.82
284 285 0.741326 ATCACGCACGAGAGCATAGT 59.259 50.000 0.00 0.00 0.00 2.12
285 286 1.845266 AATCACGCACGAGAGCATAG 58.155 50.000 0.00 0.00 0.00 2.23
286 287 2.193447 GAAATCACGCACGAGAGCATA 58.807 47.619 0.00 0.00 0.00 3.14
287 288 1.002366 GAAATCACGCACGAGAGCAT 58.998 50.000 0.00 0.00 0.00 3.79
288 289 0.319469 TGAAATCACGCACGAGAGCA 60.319 50.000 0.00 0.00 0.00 4.26
289 290 0.790207 TTGAAATCACGCACGAGAGC 59.210 50.000 0.00 0.00 0.00 4.09
290 291 2.061773 AGTTGAAATCACGCACGAGAG 58.938 47.619 0.00 0.00 0.00 3.20
291 292 2.148916 AGTTGAAATCACGCACGAGA 57.851 45.000 0.00 0.00 0.00 4.04
292 293 2.987149 AGTAGTTGAAATCACGCACGAG 59.013 45.455 0.00 0.00 0.00 4.18
293 294 3.021269 AGTAGTTGAAATCACGCACGA 57.979 42.857 0.00 0.00 0.00 4.35
294 295 3.788434 AAGTAGTTGAAATCACGCACG 57.212 42.857 0.00 0.00 0.00 5.34
295 296 6.827641 TCATAAAGTAGTTGAAATCACGCAC 58.172 36.000 0.00 0.00 0.00 5.34
296 297 7.428282 TTCATAAAGTAGTTGAAATCACGCA 57.572 32.000 0.00 0.00 0.00 5.24
297 298 7.370836 CGATTCATAAAGTAGTTGAAATCACGC 59.629 37.037 0.00 0.00 33.45 5.34
298 299 8.380644 ACGATTCATAAAGTAGTTGAAATCACG 58.619 33.333 0.00 0.00 33.45 4.35
299 300 9.478019 CACGATTCATAAAGTAGTTGAAATCAC 57.522 33.333 0.00 0.00 33.45 3.06
300 301 9.430623 TCACGATTCATAAAGTAGTTGAAATCA 57.569 29.630 0.00 0.00 33.45 2.57
303 304 8.175069 GCATCACGATTCATAAAGTAGTTGAAA 58.825 33.333 0.00 0.00 33.45 2.69
304 305 7.333174 TGCATCACGATTCATAAAGTAGTTGAA 59.667 33.333 0.00 0.00 34.18 2.69
305 306 6.816140 TGCATCACGATTCATAAAGTAGTTGA 59.184 34.615 0.00 0.00 0.00 3.18
306 307 7.003939 TGCATCACGATTCATAAAGTAGTTG 57.996 36.000 0.00 0.00 0.00 3.16
307 308 7.609760 TTGCATCACGATTCATAAAGTAGTT 57.390 32.000 0.00 0.00 0.00 2.24
308 309 7.609760 TTTGCATCACGATTCATAAAGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
309 310 7.800380 GGATTTGCATCACGATTCATAAAGTAG 59.200 37.037 0.00 0.00 0.00 2.57
310 311 7.281999 TGGATTTGCATCACGATTCATAAAGTA 59.718 33.333 0.00 0.00 0.00 2.24
311 312 6.095300 TGGATTTGCATCACGATTCATAAAGT 59.905 34.615 0.00 0.00 0.00 2.66
312 313 6.497437 TGGATTTGCATCACGATTCATAAAG 58.503 36.000 0.00 0.00 0.00 1.85
313 314 6.448207 TGGATTTGCATCACGATTCATAAA 57.552 33.333 0.00 0.00 0.00 1.40
314 315 6.264832 GTTGGATTTGCATCACGATTCATAA 58.735 36.000 0.00 0.00 0.00 1.90
315 316 5.503846 CGTTGGATTTGCATCACGATTCATA 60.504 40.000 0.00 0.00 32.91 2.15
316 317 4.675510 GTTGGATTTGCATCACGATTCAT 58.324 39.130 0.00 0.00 0.00 2.57
317 318 3.426025 CGTTGGATTTGCATCACGATTCA 60.426 43.478 0.00 0.00 32.91 2.57
318 319 3.100817 CGTTGGATTTGCATCACGATTC 58.899 45.455 0.00 0.00 32.91 2.52
319 320 2.746904 TCGTTGGATTTGCATCACGATT 59.253 40.909 0.00 0.00 34.54 3.34
320 321 2.355197 TCGTTGGATTTGCATCACGAT 58.645 42.857 0.00 0.00 34.54 3.73
321 322 1.802069 TCGTTGGATTTGCATCACGA 58.198 45.000 0.00 0.00 36.17 4.35
322 323 2.241722 GTTCGTTGGATTTGCATCACG 58.758 47.619 0.00 0.00 32.59 4.35
323 324 2.241722 CGTTCGTTGGATTTGCATCAC 58.758 47.619 0.00 0.00 0.00 3.06
324 325 1.198867 CCGTTCGTTGGATTTGCATCA 59.801 47.619 0.00 0.00 0.00 3.07
325 326 1.895051 CCGTTCGTTGGATTTGCATC 58.105 50.000 0.00 0.00 0.00 3.91
326 327 0.109319 GCCGTTCGTTGGATTTGCAT 60.109 50.000 0.00 0.00 0.00 3.96
327 328 1.284408 GCCGTTCGTTGGATTTGCA 59.716 52.632 0.00 0.00 0.00 4.08
328 329 0.729140 CTGCCGTTCGTTGGATTTGC 60.729 55.000 0.00 0.00 0.00 3.68
329 330 0.109781 CCTGCCGTTCGTTGGATTTG 60.110 55.000 0.00 0.00 0.00 2.32
330 331 1.241315 CCCTGCCGTTCGTTGGATTT 61.241 55.000 0.00 0.00 0.00 2.17
331 332 1.674322 CCCTGCCGTTCGTTGGATT 60.674 57.895 0.00 0.00 0.00 3.01
332 333 2.046314 CCCTGCCGTTCGTTGGAT 60.046 61.111 0.00 0.00 0.00 3.41
335 336 2.978010 AAGCCCTGCCGTTCGTTG 60.978 61.111 0.00 0.00 0.00 4.10
336 337 2.978010 CAAGCCCTGCCGTTCGTT 60.978 61.111 0.00 0.00 0.00 3.85
337 338 3.936203 TCAAGCCCTGCCGTTCGT 61.936 61.111 0.00 0.00 0.00 3.85
338 339 3.423154 GTCAAGCCCTGCCGTTCG 61.423 66.667 0.00 0.00 0.00 3.95
339 340 2.281484 TGTCAAGCCCTGCCGTTC 60.281 61.111 0.00 0.00 0.00 3.95
340 341 2.281761 CTGTCAAGCCCTGCCGTT 60.282 61.111 0.00 0.00 0.00 4.44
341 342 3.120086 AACTGTCAAGCCCTGCCGT 62.120 57.895 0.00 0.00 0.00 5.68
342 343 2.281761 AACTGTCAAGCCCTGCCG 60.282 61.111 0.00 0.00 0.00 5.69
343 344 1.228245 TCAACTGTCAAGCCCTGCC 60.228 57.895 0.00 0.00 0.00 4.85
344 345 0.536006 ACTCAACTGTCAAGCCCTGC 60.536 55.000 0.00 0.00 0.00 4.85
345 346 1.233019 CACTCAACTGTCAAGCCCTG 58.767 55.000 0.00 0.00 0.00 4.45
346 347 0.536006 GCACTCAACTGTCAAGCCCT 60.536 55.000 0.00 0.00 0.00 5.19
347 348 1.518903 GGCACTCAACTGTCAAGCCC 61.519 60.000 0.00 0.00 34.71 5.19
348 349 1.518903 GGGCACTCAACTGTCAAGCC 61.519 60.000 0.00 0.00 39.86 4.35
349 350 0.536006 AGGGCACTCAACTGTCAAGC 60.536 55.000 0.00 0.00 0.00 4.01
350 351 1.517242 GAGGGCACTCAACTGTCAAG 58.483 55.000 12.23 0.00 43.41 3.02
351 352 0.249868 CGAGGGCACTCAACTGTCAA 60.250 55.000 17.92 0.00 44.17 3.18
352 353 1.367471 CGAGGGCACTCAACTGTCA 59.633 57.895 17.92 0.00 44.17 3.58
353 354 2.029844 GCGAGGGCACTCAACTGTC 61.030 63.158 17.92 0.00 44.17 3.51
354 355 2.031163 GCGAGGGCACTCAACTGT 59.969 61.111 17.92 0.00 44.17 3.55
355 356 2.031012 TGCGAGGGCACTCAACTG 59.969 61.111 17.92 0.00 46.21 3.16
374 375 2.287909 GGAAATTTGCAGTGCCACGTAA 60.288 45.455 13.72 0.00 0.00 3.18
375 376 1.268352 GGAAATTTGCAGTGCCACGTA 59.732 47.619 13.72 0.00 0.00 3.57
376 377 0.031994 GGAAATTTGCAGTGCCACGT 59.968 50.000 13.72 0.00 0.00 4.49
377 378 1.003262 CGGAAATTTGCAGTGCCACG 61.003 55.000 13.72 2.89 0.00 4.94
378 379 0.313672 TCGGAAATTTGCAGTGCCAC 59.686 50.000 13.72 0.00 0.00 5.01
379 380 1.255882 ATCGGAAATTTGCAGTGCCA 58.744 45.000 13.72 0.00 0.00 4.92
380 381 3.502191 TTATCGGAAATTTGCAGTGCC 57.498 42.857 13.72 0.00 0.00 5.01
381 382 4.732784 TCTTTATCGGAAATTTGCAGTGC 58.267 39.130 8.58 8.58 0.00 4.40
382 383 5.287035 GCTTCTTTATCGGAAATTTGCAGTG 59.713 40.000 10.49 0.00 0.00 3.66
383 384 5.048083 TGCTTCTTTATCGGAAATTTGCAGT 60.048 36.000 10.49 0.14 0.00 4.40
384 385 5.287035 GTGCTTCTTTATCGGAAATTTGCAG 59.713 40.000 10.49 3.20 0.00 4.41
385 386 5.160641 GTGCTTCTTTATCGGAAATTTGCA 58.839 37.500 10.49 0.00 0.00 4.08
386 387 5.160641 TGTGCTTCTTTATCGGAAATTTGC 58.839 37.500 0.00 0.00 0.00 3.68
387 388 9.173939 GATATGTGCTTCTTTATCGGAAATTTG 57.826 33.333 0.00 0.00 0.00 2.32
388 389 9.125026 AGATATGTGCTTCTTTATCGGAAATTT 57.875 29.630 0.00 0.00 0.00 1.82
389 390 8.682936 AGATATGTGCTTCTTTATCGGAAATT 57.317 30.769 0.00 0.00 0.00 1.82
390 391 9.209175 GTAGATATGTGCTTCTTTATCGGAAAT 57.791 33.333 0.00 0.00 0.00 2.17
391 392 8.421784 AGTAGATATGTGCTTCTTTATCGGAAA 58.578 33.333 0.00 0.00 0.00 3.13
392 393 7.952671 AGTAGATATGTGCTTCTTTATCGGAA 58.047 34.615 0.00 0.00 0.00 4.30
393 394 7.526142 AGTAGATATGTGCTTCTTTATCGGA 57.474 36.000 0.00 0.00 0.00 4.55
394 395 7.867909 TGAAGTAGATATGTGCTTCTTTATCGG 59.132 37.037 24.37 0.00 38.41 4.18
395 396 8.695284 GTGAAGTAGATATGTGCTTCTTTATCG 58.305 37.037 24.37 0.00 38.41 2.92
396 397 9.534565 TGTGAAGTAGATATGTGCTTCTTTATC 57.465 33.333 24.37 13.55 38.41 1.75
397 398 9.319143 GTGTGAAGTAGATATGTGCTTCTTTAT 57.681 33.333 24.37 0.00 38.41 1.40
398 399 7.488150 CGTGTGAAGTAGATATGTGCTTCTTTA 59.512 37.037 24.37 12.41 38.41 1.85
399 400 6.311445 CGTGTGAAGTAGATATGTGCTTCTTT 59.689 38.462 24.37 0.00 38.41 2.52
400 401 5.807520 CGTGTGAAGTAGATATGTGCTTCTT 59.192 40.000 24.37 6.82 38.41 2.52
401 402 5.105716 ACGTGTGAAGTAGATATGTGCTTCT 60.106 40.000 24.37 7.61 38.41 2.85
402 403 5.004821 CACGTGTGAAGTAGATATGTGCTTC 59.995 44.000 19.63 19.63 38.17 3.86
403 404 4.864806 CACGTGTGAAGTAGATATGTGCTT 59.135 41.667 7.58 2.76 0.00 3.91
404 405 4.157840 TCACGTGTGAAGTAGATATGTGCT 59.842 41.667 16.51 0.00 36.53 4.40
405 406 4.421058 TCACGTGTGAAGTAGATATGTGC 58.579 43.478 16.51 0.00 36.53 4.57
429 430 0.181114 TCATGGAGCATAGGGTGTGC 59.819 55.000 0.00 0.00 42.81 4.57
430 431 2.171237 TCTTCATGGAGCATAGGGTGTG 59.829 50.000 0.00 0.00 0.00 3.82
431 432 2.481441 TCTTCATGGAGCATAGGGTGT 58.519 47.619 0.00 0.00 0.00 4.16
432 433 3.565764 TTCTTCATGGAGCATAGGGTG 57.434 47.619 0.00 0.00 0.00 4.61
433 434 3.372025 GGTTTCTTCATGGAGCATAGGGT 60.372 47.826 0.00 0.00 0.00 4.34
434 435 3.217626 GGTTTCTTCATGGAGCATAGGG 58.782 50.000 0.00 0.00 0.00 3.53
435 436 3.217626 GGGTTTCTTCATGGAGCATAGG 58.782 50.000 0.00 0.00 0.00 2.57
436 437 2.874701 CGGGTTTCTTCATGGAGCATAG 59.125 50.000 0.00 0.00 0.00 2.23
437 438 2.503765 TCGGGTTTCTTCATGGAGCATA 59.496 45.455 0.00 0.00 0.00 3.14
438 439 1.281867 TCGGGTTTCTTCATGGAGCAT 59.718 47.619 0.00 0.00 0.00 3.79
439 440 0.690192 TCGGGTTTCTTCATGGAGCA 59.310 50.000 0.00 0.00 0.00 4.26
440 441 1.087501 GTCGGGTTTCTTCATGGAGC 58.912 55.000 0.00 0.00 0.00 4.70
441 442 1.067142 TCGTCGGGTTTCTTCATGGAG 60.067 52.381 0.00 0.00 0.00 3.86
442 443 0.970640 TCGTCGGGTTTCTTCATGGA 59.029 50.000 0.00 0.00 0.00 3.41
443 444 1.337823 ACTCGTCGGGTTTCTTCATGG 60.338 52.381 0.00 0.00 0.00 3.66
444 445 2.080286 ACTCGTCGGGTTTCTTCATG 57.920 50.000 0.00 0.00 0.00 3.07
445 446 3.087031 TCTACTCGTCGGGTTTCTTCAT 58.913 45.455 1.49 0.00 0.00 2.57
446 447 2.227388 GTCTACTCGTCGGGTTTCTTCA 59.773 50.000 1.49 0.00 0.00 3.02
447 448 2.487372 AGTCTACTCGTCGGGTTTCTTC 59.513 50.000 1.49 0.00 0.00 2.87
448 449 2.512705 AGTCTACTCGTCGGGTTTCTT 58.487 47.619 1.49 0.00 0.00 2.52
449 450 2.197283 AGTCTACTCGTCGGGTTTCT 57.803 50.000 1.49 0.00 0.00 2.52
450 451 4.425577 TTTAGTCTACTCGTCGGGTTTC 57.574 45.455 1.49 0.00 0.00 2.78
451 452 4.037923 TGTTTTAGTCTACTCGTCGGGTTT 59.962 41.667 1.49 0.00 0.00 3.27
452 453 3.569701 TGTTTTAGTCTACTCGTCGGGTT 59.430 43.478 1.49 0.00 0.00 4.11
453 454 3.149196 TGTTTTAGTCTACTCGTCGGGT 58.851 45.455 1.97 1.97 0.00 5.28
454 455 3.837213 TGTTTTAGTCTACTCGTCGGG 57.163 47.619 0.00 0.00 0.00 5.14
455 456 5.118203 CCTTTTGTTTTAGTCTACTCGTCGG 59.882 44.000 0.00 0.00 0.00 4.79
456 457 5.916883 TCCTTTTGTTTTAGTCTACTCGTCG 59.083 40.000 0.00 0.00 0.00 5.12
457 458 7.144000 TCTCCTTTTGTTTTAGTCTACTCGTC 58.856 38.462 0.00 0.00 0.00 4.20
458 459 7.047460 TCTCCTTTTGTTTTAGTCTACTCGT 57.953 36.000 0.00 0.00 0.00 4.18
459 460 7.941795 TTCTCCTTTTGTTTTAGTCTACTCG 57.058 36.000 0.00 0.00 0.00 4.18
497 498 7.235430 TGTGACGTTTTGTTTCTTTGTTTTT 57.765 28.000 0.00 0.00 0.00 1.94
498 499 6.830114 TGTGACGTTTTGTTTCTTTGTTTT 57.170 29.167 0.00 0.00 0.00 2.43
499 500 6.074034 CCTTGTGACGTTTTGTTTCTTTGTTT 60.074 34.615 0.00 0.00 0.00 2.83
500 501 5.404066 CCTTGTGACGTTTTGTTTCTTTGTT 59.596 36.000 0.00 0.00 0.00 2.83
501 502 4.920927 CCTTGTGACGTTTTGTTTCTTTGT 59.079 37.500 0.00 0.00 0.00 2.83
502 503 5.157781 TCCTTGTGACGTTTTGTTTCTTTG 58.842 37.500 0.00 0.00 0.00 2.77
503 504 5.182380 TCTCCTTGTGACGTTTTGTTTCTTT 59.818 36.000 0.00 0.00 0.00 2.52
504 505 4.698304 TCTCCTTGTGACGTTTTGTTTCTT 59.302 37.500 0.00 0.00 0.00 2.52
505 506 4.258543 TCTCCTTGTGACGTTTTGTTTCT 58.741 39.130 0.00 0.00 0.00 2.52
506 507 4.609691 TCTCCTTGTGACGTTTTGTTTC 57.390 40.909 0.00 0.00 0.00 2.78
507 508 5.379732 TTTCTCCTTGTGACGTTTTGTTT 57.620 34.783 0.00 0.00 0.00 2.83
508 509 5.048294 ACTTTTCTCCTTGTGACGTTTTGTT 60.048 36.000 0.00 0.00 0.00 2.83
509 510 4.457949 ACTTTTCTCCTTGTGACGTTTTGT 59.542 37.500 0.00 0.00 0.00 2.83
510 511 4.793216 CACTTTTCTCCTTGTGACGTTTTG 59.207 41.667 0.00 0.00 32.72 2.44
511 512 4.457949 ACACTTTTCTCCTTGTGACGTTTT 59.542 37.500 0.00 0.00 34.81 2.43
512 513 4.007659 ACACTTTTCTCCTTGTGACGTTT 58.992 39.130 0.00 0.00 34.81 3.60
513 514 3.606687 ACACTTTTCTCCTTGTGACGTT 58.393 40.909 0.00 0.00 34.81 3.99
514 515 3.261981 ACACTTTTCTCCTTGTGACGT 57.738 42.857 0.00 0.00 34.81 4.34
515 516 4.342772 CAAACACTTTTCTCCTTGTGACG 58.657 43.478 0.00 0.00 34.81 4.35
516 517 4.105486 GCAAACACTTTTCTCCTTGTGAC 58.895 43.478 0.00 0.00 34.81 3.67
517 518 3.130340 GGCAAACACTTTTCTCCTTGTGA 59.870 43.478 0.00 0.00 34.81 3.58
518 519 3.119173 TGGCAAACACTTTTCTCCTTGTG 60.119 43.478 0.00 0.00 36.59 3.33
519 520 3.096092 TGGCAAACACTTTTCTCCTTGT 58.904 40.909 0.00 0.00 0.00 3.16
520 521 3.799281 TGGCAAACACTTTTCTCCTTG 57.201 42.857 0.00 0.00 0.00 3.61
521 522 3.493176 GCATGGCAAACACTTTTCTCCTT 60.493 43.478 0.00 0.00 0.00 3.36
522 523 2.036346 GCATGGCAAACACTTTTCTCCT 59.964 45.455 0.00 0.00 0.00 3.69
523 524 2.407090 GCATGGCAAACACTTTTCTCC 58.593 47.619 0.00 0.00 0.00 3.71
524 525 2.053627 CGCATGGCAAACACTTTTCTC 58.946 47.619 0.00 0.00 0.00 2.87
525 526 1.680735 TCGCATGGCAAACACTTTTCT 59.319 42.857 0.00 0.00 0.00 2.52
526 527 1.786579 GTCGCATGGCAAACACTTTTC 59.213 47.619 0.00 0.00 0.00 2.29
527 528 1.135915 TGTCGCATGGCAAACACTTTT 59.864 42.857 0.00 0.00 0.00 2.27
528 529 0.743688 TGTCGCATGGCAAACACTTT 59.256 45.000 0.00 0.00 0.00 2.66
529 530 0.030638 GTGTCGCATGGCAAACACTT 59.969 50.000 14.62 0.00 39.85 3.16
530 531 1.654220 GTGTCGCATGGCAAACACT 59.346 52.632 14.62 0.00 39.85 3.55
531 532 1.725625 CGTGTCGCATGGCAAACAC 60.726 57.895 12.84 12.84 39.70 3.32
532 533 2.183504 ACGTGTCGCATGGCAAACA 61.184 52.632 0.00 0.00 0.00 2.83
533 534 1.725625 CACGTGTCGCATGGCAAAC 60.726 57.895 7.58 0.00 0.00 2.93
534 535 2.636462 CACGTGTCGCATGGCAAA 59.364 55.556 7.58 0.00 0.00 3.68
535 536 3.353029 CCACGTGTCGCATGGCAA 61.353 61.111 15.65 0.00 0.00 4.52
538 539 4.088762 GTGCCACGTGTCGCATGG 62.089 66.667 20.01 2.27 37.33 3.66
539 540 4.428922 CGTGCCACGTGTCGCATG 62.429 66.667 20.01 19.93 37.33 4.06
543 544 3.172575 CTAGCGTGCCACGTGTCG 61.173 66.667 19.57 16.22 44.73 4.35
544 545 3.479269 GCTAGCGTGCCACGTGTC 61.479 66.667 19.57 0.98 44.73 3.67
553 554 3.849951 ATCCGTGGGGCTAGCGTG 61.850 66.667 9.00 0.00 0.00 5.34
554 555 3.849951 CATCCGTGGGGCTAGCGT 61.850 66.667 9.00 0.00 0.00 5.07
555 556 4.609018 CCATCCGTGGGGCTAGCG 62.609 72.222 9.00 0.00 42.11 4.26
556 557 4.937431 GCCATCCGTGGGGCTAGC 62.937 72.222 6.04 6.04 46.74 3.42
561 562 3.660422 AATGGTGCCATCCGTGGGG 62.660 63.158 3.96 0.00 46.14 4.96
562 563 2.044053 AATGGTGCCATCCGTGGG 60.044 61.111 3.96 0.00 46.14 4.61
564 565 1.996786 GCTGAATGGTGCCATCCGTG 61.997 60.000 3.96 0.00 35.31 4.94
565 566 1.750399 GCTGAATGGTGCCATCCGT 60.750 57.895 3.96 0.00 35.31 4.69
566 567 1.442526 GAGCTGAATGGTGCCATCCG 61.443 60.000 3.96 0.00 35.31 4.18
567 568 0.394762 TGAGCTGAATGGTGCCATCC 60.395 55.000 3.96 0.00 35.31 3.51
568 569 1.022735 CTGAGCTGAATGGTGCCATC 58.977 55.000 3.96 0.00 35.31 3.51
569 570 0.622136 TCTGAGCTGAATGGTGCCAT 59.378 50.000 0.00 0.00 38.46 4.40
570 571 0.401356 TTCTGAGCTGAATGGTGCCA 59.599 50.000 0.00 0.00 0.00 4.92
571 572 1.538047 TTTCTGAGCTGAATGGTGCC 58.462 50.000 0.00 0.00 0.00 5.01
572 573 3.572584 CTTTTTCTGAGCTGAATGGTGC 58.427 45.455 0.00 0.00 0.00 5.01
573 574 3.822735 TCCTTTTTCTGAGCTGAATGGTG 59.177 43.478 0.00 0.00 0.00 4.17
574 575 3.823304 GTCCTTTTTCTGAGCTGAATGGT 59.177 43.478 0.00 0.00 0.00 3.55
575 576 3.120060 CGTCCTTTTTCTGAGCTGAATGG 60.120 47.826 0.00 0.00 0.00 3.16
576 577 3.748048 TCGTCCTTTTTCTGAGCTGAATG 59.252 43.478 0.00 0.00 0.00 2.67
577 578 3.999663 CTCGTCCTTTTTCTGAGCTGAAT 59.000 43.478 0.00 0.00 0.00 2.57
578 579 3.069586 TCTCGTCCTTTTTCTGAGCTGAA 59.930 43.478 0.00 0.00 0.00 3.02
579 580 2.628178 TCTCGTCCTTTTTCTGAGCTGA 59.372 45.455 0.00 0.00 0.00 4.26
580 581 2.992543 CTCTCGTCCTTTTTCTGAGCTG 59.007 50.000 0.00 0.00 0.00 4.24
581 582 2.028567 CCTCTCGTCCTTTTTCTGAGCT 60.029 50.000 0.00 0.00 0.00 4.09
582 583 2.342179 CCTCTCGTCCTTTTTCTGAGC 58.658 52.381 0.00 0.00 0.00 4.26
583 584 2.354203 CCCCTCTCGTCCTTTTTCTGAG 60.354 54.545 0.00 0.00 0.00 3.35
584 585 1.623811 CCCCTCTCGTCCTTTTTCTGA 59.376 52.381 0.00 0.00 0.00 3.27
585 586 1.623811 TCCCCTCTCGTCCTTTTTCTG 59.376 52.381 0.00 0.00 0.00 3.02
586 587 1.903183 CTCCCCTCTCGTCCTTTTTCT 59.097 52.381 0.00 0.00 0.00 2.52
587 588 1.900486 TCTCCCCTCTCGTCCTTTTTC 59.100 52.381 0.00 0.00 0.00 2.29
588 589 2.025636 TCTCCCCTCTCGTCCTTTTT 57.974 50.000 0.00 0.00 0.00 1.94
589 590 2.025636 TTCTCCCCTCTCGTCCTTTT 57.974 50.000 0.00 0.00 0.00 2.27
590 591 2.025636 TTTCTCCCCTCTCGTCCTTT 57.974 50.000 0.00 0.00 0.00 3.11
591 592 1.834263 CATTTCTCCCCTCTCGTCCTT 59.166 52.381 0.00 0.00 0.00 3.36
592 593 1.490574 CATTTCTCCCCTCTCGTCCT 58.509 55.000 0.00 0.00 0.00 3.85
593 594 0.179070 GCATTTCTCCCCTCTCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
594 595 0.827368 AGCATTTCTCCCCTCTCGTC 59.173 55.000 0.00 0.00 0.00 4.20
595 596 1.065854 CAAGCATTTCTCCCCTCTCGT 60.066 52.381 0.00 0.00 0.00 4.18
596 597 1.661341 CAAGCATTTCTCCCCTCTCG 58.339 55.000 0.00 0.00 0.00 4.04
597 598 1.283321 ACCAAGCATTTCTCCCCTCTC 59.717 52.381 0.00 0.00 0.00 3.20
598 599 1.376649 ACCAAGCATTTCTCCCCTCT 58.623 50.000 0.00 0.00 0.00 3.69
599 600 2.239907 AGTACCAAGCATTTCTCCCCTC 59.760 50.000 0.00 0.00 0.00 4.30
600 601 2.279173 AGTACCAAGCATTTCTCCCCT 58.721 47.619 0.00 0.00 0.00 4.79
601 602 2.808906 AGTACCAAGCATTTCTCCCC 57.191 50.000 0.00 0.00 0.00 4.81
602 603 3.017442 GGAAGTACCAAGCATTTCTCCC 58.983 50.000 0.00 0.00 38.79 4.30
603 604 3.956744 AGGAAGTACCAAGCATTTCTCC 58.043 45.455 0.00 0.00 42.04 3.71
604 605 5.966742 AAAGGAAGTACCAAGCATTTCTC 57.033 39.130 0.00 0.00 42.04 2.87
605 606 6.779860 TCTAAAGGAAGTACCAAGCATTTCT 58.220 36.000 0.00 0.00 42.04 2.52
606 607 7.336931 TGATCTAAAGGAAGTACCAAGCATTTC 59.663 37.037 0.00 0.00 42.04 2.17
607 608 7.121315 GTGATCTAAAGGAAGTACCAAGCATTT 59.879 37.037 0.00 0.00 42.04 2.32
608 609 6.599638 GTGATCTAAAGGAAGTACCAAGCATT 59.400 38.462 0.00 0.00 42.04 3.56
609 610 6.069963 AGTGATCTAAAGGAAGTACCAAGCAT 60.070 38.462 0.00 0.00 42.04 3.79
610 611 5.248477 AGTGATCTAAAGGAAGTACCAAGCA 59.752 40.000 0.00 0.00 42.04 3.91
611 612 5.735766 AGTGATCTAAAGGAAGTACCAAGC 58.264 41.667 0.00 0.00 42.04 4.01
612 613 9.720769 TTTTAGTGATCTAAAGGAAGTACCAAG 57.279 33.333 0.00 0.00 43.89 3.61
613 614 9.498176 GTTTTAGTGATCTAAAGGAAGTACCAA 57.502 33.333 0.00 0.00 43.89 3.67
614 615 8.877195 AGTTTTAGTGATCTAAAGGAAGTACCA 58.123 33.333 0.00 0.00 43.89 3.25
676 677 6.569179 TCATTTTCGTCCTCCCTTAAAAAG 57.431 37.500 0.00 0.00 0.00 2.27
677 678 7.231722 TCAATCATTTTCGTCCTCCCTTAAAAA 59.768 33.333 0.00 0.00 0.00 1.94
678 679 6.717540 TCAATCATTTTCGTCCTCCCTTAAAA 59.282 34.615 0.00 0.00 0.00 1.52
679 680 6.242396 TCAATCATTTTCGTCCTCCCTTAAA 58.758 36.000 0.00 0.00 0.00 1.52
680 681 5.811190 TCAATCATTTTCGTCCTCCCTTAA 58.189 37.500 0.00 0.00 0.00 1.85
681 682 5.429681 TCAATCATTTTCGTCCTCCCTTA 57.570 39.130 0.00 0.00 0.00 2.69
682 683 4.301072 TCAATCATTTTCGTCCTCCCTT 57.699 40.909 0.00 0.00 0.00 3.95
683 684 4.510167 ATCAATCATTTTCGTCCTCCCT 57.490 40.909 0.00 0.00 0.00 4.20
684 685 8.567285 AATATATCAATCATTTTCGTCCTCCC 57.433 34.615 0.00 0.00 0.00 4.30
706 707 9.801873 CAAAGAGAACAACTTTCCTGAAAAATA 57.198 29.630 0.00 0.00 35.74 1.40
707 708 8.314021 ACAAAGAGAACAACTTTCCTGAAAAAT 58.686 29.630 0.00 0.00 35.74 1.82
708 709 7.666623 ACAAAGAGAACAACTTTCCTGAAAAA 58.333 30.769 0.00 0.00 35.74 1.94
709 710 7.227049 ACAAAGAGAACAACTTTCCTGAAAA 57.773 32.000 0.00 0.00 35.74 2.29
710 711 6.834168 ACAAAGAGAACAACTTTCCTGAAA 57.166 33.333 0.00 0.00 35.74 2.69
711 712 7.773224 TCATACAAAGAGAACAACTTTCCTGAA 59.227 33.333 0.00 0.00 35.74 3.02
712 713 7.279615 TCATACAAAGAGAACAACTTTCCTGA 58.720 34.615 0.00 0.00 35.74 3.86
713 714 7.496529 TCATACAAAGAGAACAACTTTCCTG 57.503 36.000 0.00 0.00 35.74 3.86
714 715 8.697507 AATCATACAAAGAGAACAACTTTCCT 57.302 30.769 0.00 0.00 35.74 3.36
715 716 9.750125 AAAATCATACAAAGAGAACAACTTTCC 57.250 29.630 0.00 0.00 35.74 3.13
717 718 9.450807 CGAAAATCATACAAAGAGAACAACTTT 57.549 29.630 0.00 0.00 37.96 2.66
718 719 8.076178 CCGAAAATCATACAAAGAGAACAACTT 58.924 33.333 0.00 0.00 0.00 2.66
719 720 7.308589 CCCGAAAATCATACAAAGAGAACAACT 60.309 37.037 0.00 0.00 0.00 3.16
720 721 6.801862 CCCGAAAATCATACAAAGAGAACAAC 59.198 38.462 0.00 0.00 0.00 3.32
721 722 6.712998 TCCCGAAAATCATACAAAGAGAACAA 59.287 34.615 0.00 0.00 0.00 2.83
722 723 6.234920 TCCCGAAAATCATACAAAGAGAACA 58.765 36.000 0.00 0.00 0.00 3.18
723 724 6.737254 TCCCGAAAATCATACAAAGAGAAC 57.263 37.500 0.00 0.00 0.00 3.01
724 725 6.128007 GCTTCCCGAAAATCATACAAAGAGAA 60.128 38.462 0.00 0.00 0.00 2.87
725 726 5.354234 GCTTCCCGAAAATCATACAAAGAGA 59.646 40.000 0.00 0.00 0.00 3.10
726 727 5.355350 AGCTTCCCGAAAATCATACAAAGAG 59.645 40.000 0.00 0.00 0.00 2.85
727 728 5.123820 CAGCTTCCCGAAAATCATACAAAGA 59.876 40.000 0.00 0.00 0.00 2.52
728 729 5.106157 ACAGCTTCCCGAAAATCATACAAAG 60.106 40.000 0.00 0.00 0.00 2.77
729 730 4.764823 ACAGCTTCCCGAAAATCATACAAA 59.235 37.500 0.00 0.00 0.00 2.83
730 731 4.331968 ACAGCTTCCCGAAAATCATACAA 58.668 39.130 0.00 0.00 0.00 2.41
731 732 3.950397 ACAGCTTCCCGAAAATCATACA 58.050 40.909 0.00 0.00 0.00 2.29
732 733 4.965119 AACAGCTTCCCGAAAATCATAC 57.035 40.909 0.00 0.00 0.00 2.39
733 734 4.764823 ACAAACAGCTTCCCGAAAATCATA 59.235 37.500 0.00 0.00 0.00 2.15
745 746 2.201732 TCTCGTGTGACAAACAGCTTC 58.798 47.619 0.00 0.00 40.26 3.86
749 750 3.362014 CGTTCATCTCGTGTGACAAACAG 60.362 47.826 0.00 0.00 40.26 3.16
751 752 2.096909 CCGTTCATCTCGTGTGACAAAC 60.097 50.000 0.00 0.00 0.00 2.93
809 811 3.047796 CGTATTCCCGTGCTACATGTAC 58.952 50.000 0.08 0.16 0.00 2.90
810 812 2.544277 GCGTATTCCCGTGCTACATGTA 60.544 50.000 5.25 5.25 0.00 2.29
845 848 3.464720 TTTAATCTGTTGGGCCCATGA 57.535 42.857 29.23 23.71 0.00 3.07
874 877 1.300971 CCGGTCCAGTTCGTACTCGA 61.301 60.000 0.00 0.00 44.66 4.04
875 878 1.136147 CCGGTCCAGTTCGTACTCG 59.864 63.158 0.00 0.00 38.55 4.18
876 879 1.101331 ATCCGGTCCAGTTCGTACTC 58.899 55.000 0.00 0.00 30.26 2.59
877 880 2.019984 GTATCCGGTCCAGTTCGTACT 58.980 52.381 0.00 0.00 34.00 2.73
878 881 1.066152 GGTATCCGGTCCAGTTCGTAC 59.934 57.143 0.00 0.00 0.00 3.67
879 882 1.392589 GGTATCCGGTCCAGTTCGTA 58.607 55.000 0.00 0.00 0.00 3.43
880 883 1.660560 CGGTATCCGGTCCAGTTCGT 61.661 60.000 0.00 0.00 44.15 3.85
881 884 1.065273 CGGTATCCGGTCCAGTTCG 59.935 63.158 0.00 0.00 44.15 3.95
1076 1084 2.203084 GGCTTTCTCCGCTAGGGC 60.203 66.667 0.19 0.00 38.33 5.19
1088 1096 1.156736 CACGTTCTTGATCGGGCTTT 58.843 50.000 6.14 0.00 0.00 3.51
1581 1589 1.228657 GGAGGTTCCACTTGTCGTGC 61.229 60.000 0.00 0.00 42.42 5.34
1619 1627 1.187087 GAGGGAGTCGAAGATGGTGT 58.813 55.000 0.00 0.00 40.67 4.16
2088 2096 1.084370 CCTTCTTGATCCACGGCGAC 61.084 60.000 16.62 0.00 0.00 5.19
2145 2153 0.452184 AGTGCTCGTACTCGGATGTG 59.548 55.000 0.00 0.00 37.69 3.21
2380 2390 9.507329 TTCTGCTAAATTAAGTGAAATCTGACT 57.493 29.630 0.00 0.00 0.00 3.41
2454 2499 3.119352 TGTGTTCATGTGAGAGATCCTCG 60.119 47.826 0.00 0.00 44.92 4.63
2504 2549 6.599244 TCTGAATAAGTGGAATTGTGATGACC 59.401 38.462 0.00 0.00 0.00 4.02
2555 2601 9.484806 AATTTCCCATTCTTCATTCATACTCTT 57.515 29.630 0.00 0.00 0.00 2.85
2556 2602 9.484806 AAATTTCCCATTCTTCATTCATACTCT 57.515 29.630 0.00 0.00 0.00 3.24
2630 2676 8.721478 TCTTCATTCATACTGTAAGCTTCAAAC 58.279 33.333 0.00 0.00 37.60 2.93
2701 2747 2.176798 TGGGGTTGTTCTCTCAAATGGT 59.823 45.455 0.00 0.00 0.00 3.55
2719 2765 0.882927 TTCCGTGTTCTTTCGCTGGG 60.883 55.000 0.00 0.00 0.00 4.45
2731 2777 3.522553 GAAATCCGAGAGAATTCCGTGT 58.477 45.455 0.65 0.00 0.00 4.49
2813 2859 2.365617 TCTTTTTCTGCGTCTCCTGAGT 59.634 45.455 0.00 0.00 0.00 3.41
2896 2942 1.412710 CCTAATCGTCTGGCCTGCTTA 59.587 52.381 3.32 0.00 0.00 3.09
2995 3041 1.831580 AGCCTTGCTAAGCCTTTGAG 58.168 50.000 0.00 0.00 36.99 3.02
3500 3574 3.849911 TGTGTCTGCTATGCTAGTGTTC 58.150 45.455 0.00 0.00 0.00 3.18
3652 3726 8.980481 ATGTAAAAGTTAGCTACATAGGCAAT 57.020 30.769 0.00 0.00 35.11 3.56
3750 3824 4.014406 AGACAATTGTCCCCCGTAATTTC 58.986 43.478 30.34 6.02 45.85 2.17
3778 3852 5.047377 ACAAAGCACCATAGGTAACCATTTG 60.047 40.000 0.00 0.00 32.11 2.32
3802 3876 9.352784 CTTTCTCAGTGAACAACAAATTTAACA 57.647 29.630 0.00 0.00 33.88 2.41
3803 3877 9.353999 ACTTTCTCAGTGAACAACAAATTTAAC 57.646 29.630 0.00 0.00 32.83 2.01
3838 3912 3.805066 TGAAATCACACATCCCTCCAA 57.195 42.857 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.