Multiple sequence alignment - TraesCS3B01G097200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G097200 chr3B 100.000 4230 0 0 1 4230 65197145 65192916 0.000000e+00 7812.0
1 TraesCS3B01G097200 chr3B 96.252 827 29 2 3405 4230 275341044 275341869 0.000000e+00 1354.0
2 TraesCS3B01G097200 chr3D 92.584 2670 104 36 789 3411 41699484 41696862 0.000000e+00 3747.0
3 TraesCS3B01G097200 chr3D 100.000 29 0 0 251 279 498425496 498425468 2.000000e-03 54.7
4 TraesCS3B01G097200 chr3A 89.463 2496 159 40 789 3233 53211692 53209250 0.000000e+00 3057.0
5 TraesCS3B01G097200 chr6B 96.252 827 29 2 3405 4230 455423046 455423871 0.000000e+00 1354.0
6 TraesCS3B01G097200 chr7D 96.131 827 30 2 3405 4230 198336348 198337173 0.000000e+00 1349.0
7 TraesCS3B01G097200 chr5B 96.131 827 30 2 3405 4230 287778288 287779113 0.000000e+00 1349.0
8 TraesCS3B01G097200 chr5B 93.674 411 21 5 288 696 655194289 655193882 1.010000e-170 610.0
9 TraesCS3B01G097200 chr4D 96.135 828 29 3 3405 4230 242937909 242938735 0.000000e+00 1349.0
10 TraesCS3B01G097200 chr6A 96.010 827 31 2 3405 4230 356205098 356205923 0.000000e+00 1343.0
11 TraesCS3B01G097200 chr6A 96.010 827 31 2 3405 4230 409141469 409140644 0.000000e+00 1343.0
12 TraesCS3B01G097200 chr6A 91.990 412 29 4 288 695 74975751 74975340 3.670000e-160 575.0
13 TraesCS3B01G097200 chr4B 96.010 827 31 2 3405 4230 654771542 654772367 0.000000e+00 1343.0
14 TraesCS3B01G097200 chr4B 92.978 413 24 4 288 695 518688494 518688906 7.830000e-167 597.0
15 TraesCS3B01G097200 chr2D 96.010 827 31 2 3405 4230 136425752 136426577 0.000000e+00 1343.0
16 TraesCS3B01G097200 chr2D 91.807 415 29 5 285 695 44611665 44612078 1.320000e-159 573.0
17 TraesCS3B01G097200 chr5D 92.271 414 27 5 287 696 510564270 510563858 2.190000e-162 582.0
18 TraesCS3B01G097200 chr4A 91.190 420 32 5 288 704 191162650 191162233 2.210000e-157 566.0
19 TraesCS3B01G097200 chr4A 100.000 29 0 0 251 279 532799181 532799153 2.000000e-03 54.7
20 TraesCS3B01G097200 chr4A 96.970 33 0 1 251 283 741030546 741030577 2.000000e-03 54.7
21 TraesCS3B01G097200 chr2A 91.198 409 34 2 288 695 27370191 27369784 4.780000e-154 555.0
22 TraesCS3B01G097200 chr2A 100.000 28 0 0 251 278 391541353 391541380 8.000000e-03 52.8
23 TraesCS3B01G097200 chr7B 90.453 419 33 7 283 695 194116743 194116326 2.880000e-151 545.0
24 TraesCS3B01G097200 chr1B 90.754 411 33 5 288 695 99141624 99141216 1.030000e-150 544.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G097200 chr3B 65192916 65197145 4229 True 7812 7812 100.000 1 4230 1 chr3B.!!$R1 4229
1 TraesCS3B01G097200 chr3B 275341044 275341869 825 False 1354 1354 96.252 3405 4230 1 chr3B.!!$F1 825
2 TraesCS3B01G097200 chr3D 41696862 41699484 2622 True 3747 3747 92.584 789 3411 1 chr3D.!!$R1 2622
3 TraesCS3B01G097200 chr3A 53209250 53211692 2442 True 3057 3057 89.463 789 3233 1 chr3A.!!$R1 2444
4 TraesCS3B01G097200 chr6B 455423046 455423871 825 False 1354 1354 96.252 3405 4230 1 chr6B.!!$F1 825
5 TraesCS3B01G097200 chr7D 198336348 198337173 825 False 1349 1349 96.131 3405 4230 1 chr7D.!!$F1 825
6 TraesCS3B01G097200 chr5B 287778288 287779113 825 False 1349 1349 96.131 3405 4230 1 chr5B.!!$F1 825
7 TraesCS3B01G097200 chr4D 242937909 242938735 826 False 1349 1349 96.135 3405 4230 1 chr4D.!!$F1 825
8 TraesCS3B01G097200 chr6A 356205098 356205923 825 False 1343 1343 96.010 3405 4230 1 chr6A.!!$F1 825
9 TraesCS3B01G097200 chr6A 409140644 409141469 825 True 1343 1343 96.010 3405 4230 1 chr6A.!!$R2 825
10 TraesCS3B01G097200 chr4B 654771542 654772367 825 False 1343 1343 96.010 3405 4230 1 chr4B.!!$F2 825
11 TraesCS3B01G097200 chr2D 136425752 136426577 825 False 1343 1343 96.010 3405 4230 1 chr2D.!!$F2 825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.179108 GTCAGTGCTCGTATGGTCCC 60.179 60.0 0.00 0.0 0.0 4.46 F
305 306 0.179108 AGGACGCGAACTTATGGCTC 60.179 55.0 15.93 0.0 0.0 4.70 F
939 945 0.250814 ACCCAGAGTCGTCGTCTTCT 60.251 55.0 0.00 0.0 0.0 2.85 F
1389 1408 0.391927 ATTCGGCGGTGAAATTCGGA 60.392 50.0 7.21 0.0 0.0 4.55 F
2548 2605 0.470341 GCCTACTCAACTCCCATCCC 59.530 60.0 0.00 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1232 1245 0.031515 TGAGGAGGAAGCGGGGATAA 60.032 55.0 0.00 0.00 0.00 1.75 R
2304 2344 0.518355 CCAATACAAACGCGTGCGAG 60.518 55.0 22.32 12.25 42.83 5.03 R
2903 2963 0.473755 TCTTGCCAGACTTTGAGCCA 59.526 50.0 0.00 0.00 0.00 4.75 R
3170 3271 0.919710 ACCAGGGGCTAAGATTGGAC 59.080 55.0 0.00 0.00 33.19 4.02 R
3884 4000 0.883833 CTTGGCACCACTTCATCCAC 59.116 55.0 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.459795 TTGTTAGCAACAATCACATATTGGA 57.540 32.000 9.46 0.00 45.79 3.53
27 28 7.087409 TGTTAGCAACAATCACATATTGGAG 57.913 36.000 3.07 0.00 38.72 3.86
28 29 6.883756 TGTTAGCAACAATCACATATTGGAGA 59.116 34.615 3.07 0.00 38.72 3.71
29 30 5.824904 AGCAACAATCACATATTGGAGAC 57.175 39.130 3.07 0.00 33.56 3.36
30 31 5.255687 AGCAACAATCACATATTGGAGACA 58.744 37.500 3.07 0.00 39.83 3.41
44 45 4.305989 TGGAGACAACTTTGAACATTGC 57.694 40.909 0.00 0.00 37.44 3.56
45 46 3.698539 TGGAGACAACTTTGAACATTGCA 59.301 39.130 0.00 0.00 37.44 4.08
46 47 4.159321 TGGAGACAACTTTGAACATTGCAA 59.841 37.500 0.00 0.00 37.44 4.08
47 48 4.504097 GGAGACAACTTTGAACATTGCAAC 59.496 41.667 0.00 0.00 0.00 4.17
48 49 4.432712 AGACAACTTTGAACATTGCAACC 58.567 39.130 0.00 0.00 0.00 3.77
49 50 4.081752 AGACAACTTTGAACATTGCAACCA 60.082 37.500 0.00 0.00 0.00 3.67
50 51 3.932089 ACAACTTTGAACATTGCAACCAC 59.068 39.130 0.00 0.00 0.00 4.16
51 52 3.883830 ACTTTGAACATTGCAACCACA 57.116 38.095 0.00 0.00 0.00 4.17
52 53 4.199432 ACTTTGAACATTGCAACCACAA 57.801 36.364 0.00 3.71 0.00 3.33
53 54 3.932089 ACTTTGAACATTGCAACCACAAC 59.068 39.130 0.00 0.00 31.03 3.32
54 55 2.200792 TGAACATTGCAACCACAACG 57.799 45.000 0.00 0.00 31.03 4.10
55 56 1.745653 TGAACATTGCAACCACAACGA 59.254 42.857 0.00 0.00 31.03 3.85
56 57 2.164422 TGAACATTGCAACCACAACGAA 59.836 40.909 0.00 0.00 31.03 3.85
57 58 2.949451 ACATTGCAACCACAACGAAA 57.051 40.000 0.00 0.00 31.03 3.46
58 59 3.238108 ACATTGCAACCACAACGAAAA 57.762 38.095 0.00 0.00 31.03 2.29
59 60 2.926838 ACATTGCAACCACAACGAAAAC 59.073 40.909 0.00 0.00 31.03 2.43
60 61 3.186119 CATTGCAACCACAACGAAAACT 58.814 40.909 0.00 0.00 31.03 2.66
61 62 3.305398 TTGCAACCACAACGAAAACTT 57.695 38.095 0.00 0.00 0.00 2.66
62 63 2.869897 TGCAACCACAACGAAAACTTC 58.130 42.857 0.00 0.00 0.00 3.01
73 74 2.561976 GAAAACTTCGTCAGTGCTCG 57.438 50.000 2.04 2.04 35.12 5.03
74 75 1.859080 GAAAACTTCGTCAGTGCTCGT 59.141 47.619 7.25 0.00 35.12 4.18
75 76 2.787601 AAACTTCGTCAGTGCTCGTA 57.212 45.000 7.25 0.00 35.12 3.43
76 77 3.299340 AAACTTCGTCAGTGCTCGTAT 57.701 42.857 7.25 0.00 35.12 3.06
77 78 2.264109 ACTTCGTCAGTGCTCGTATG 57.736 50.000 7.25 3.20 32.83 2.39
78 79 1.135373 ACTTCGTCAGTGCTCGTATGG 60.135 52.381 7.25 1.45 32.83 2.74
79 80 0.885879 TTCGTCAGTGCTCGTATGGT 59.114 50.000 7.25 0.00 0.00 3.55
80 81 0.450583 TCGTCAGTGCTCGTATGGTC 59.549 55.000 7.25 0.00 0.00 4.02
81 82 0.525668 CGTCAGTGCTCGTATGGTCC 60.526 60.000 0.00 0.00 0.00 4.46
82 83 0.179108 GTCAGTGCTCGTATGGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
83 84 0.324368 TCAGTGCTCGTATGGTCCCT 60.324 55.000 0.00 0.00 0.00 4.20
84 85 1.064240 TCAGTGCTCGTATGGTCCCTA 60.064 52.381 0.00 0.00 0.00 3.53
85 86 1.964223 CAGTGCTCGTATGGTCCCTAT 59.036 52.381 0.00 0.00 0.00 2.57
86 87 2.029828 CAGTGCTCGTATGGTCCCTATC 60.030 54.545 0.00 0.00 0.00 2.08
87 88 2.158445 AGTGCTCGTATGGTCCCTATCT 60.158 50.000 0.00 0.00 0.00 1.98
88 89 2.628657 GTGCTCGTATGGTCCCTATCTT 59.371 50.000 0.00 0.00 0.00 2.40
89 90 2.891580 TGCTCGTATGGTCCCTATCTTC 59.108 50.000 0.00 0.00 0.00 2.87
90 91 2.231721 GCTCGTATGGTCCCTATCTTCC 59.768 54.545 0.00 0.00 0.00 3.46
91 92 3.768878 CTCGTATGGTCCCTATCTTCCT 58.231 50.000 0.00 0.00 0.00 3.36
92 93 3.497332 TCGTATGGTCCCTATCTTCCTG 58.503 50.000 0.00 0.00 0.00 3.86
93 94 2.563179 CGTATGGTCCCTATCTTCCTGG 59.437 54.545 0.00 0.00 0.00 4.45
94 95 2.897823 ATGGTCCCTATCTTCCTGGT 57.102 50.000 0.00 0.00 0.00 4.00
95 96 2.661176 TGGTCCCTATCTTCCTGGTT 57.339 50.000 0.00 0.00 0.00 3.67
96 97 2.929301 TGGTCCCTATCTTCCTGGTTT 58.071 47.619 0.00 0.00 0.00 3.27
97 98 4.083080 TGGTCCCTATCTTCCTGGTTTA 57.917 45.455 0.00 0.00 0.00 2.01
98 99 4.641868 TGGTCCCTATCTTCCTGGTTTAT 58.358 43.478 0.00 0.00 0.00 1.40
99 100 5.043762 TGGTCCCTATCTTCCTGGTTTATT 58.956 41.667 0.00 0.00 0.00 1.40
100 101 5.104109 TGGTCCCTATCTTCCTGGTTTATTG 60.104 44.000 0.00 0.00 0.00 1.90
101 102 5.104067 GGTCCCTATCTTCCTGGTTTATTGT 60.104 44.000 0.00 0.00 0.00 2.71
102 103 6.424032 GTCCCTATCTTCCTGGTTTATTGTT 58.576 40.000 0.00 0.00 0.00 2.83
103 104 6.318900 GTCCCTATCTTCCTGGTTTATTGTTG 59.681 42.308 0.00 0.00 0.00 3.33
104 105 5.067805 CCCTATCTTCCTGGTTTATTGTTGC 59.932 44.000 0.00 0.00 0.00 4.17
105 106 5.652014 CCTATCTTCCTGGTTTATTGTTGCA 59.348 40.000 0.00 0.00 0.00 4.08
106 107 6.322201 CCTATCTTCCTGGTTTATTGTTGCAT 59.678 38.462 0.00 0.00 0.00 3.96
107 108 6.610075 ATCTTCCTGGTTTATTGTTGCATT 57.390 33.333 0.00 0.00 0.00 3.56
108 109 6.418057 TCTTCCTGGTTTATTGTTGCATTT 57.582 33.333 0.00 0.00 0.00 2.32
109 110 6.222389 TCTTCCTGGTTTATTGTTGCATTTG 58.778 36.000 0.00 0.00 0.00 2.32
110 111 4.314121 TCCTGGTTTATTGTTGCATTTGC 58.686 39.130 0.00 0.00 42.50 3.68
132 133 5.295431 CATACATGCTTCTTTTTCACCGA 57.705 39.130 0.00 0.00 0.00 4.69
133 134 5.698832 CATACATGCTTCTTTTTCACCGAA 58.301 37.500 0.00 0.00 0.00 4.30
134 135 4.228912 ACATGCTTCTTTTTCACCGAAG 57.771 40.909 0.00 0.00 37.72 3.79
135 136 3.632145 ACATGCTTCTTTTTCACCGAAGT 59.368 39.130 0.00 0.00 37.17 3.01
136 137 4.819630 ACATGCTTCTTTTTCACCGAAGTA 59.180 37.500 0.00 0.00 37.17 2.24
137 138 4.806342 TGCTTCTTTTTCACCGAAGTAC 57.194 40.909 0.00 0.00 37.17 2.73
138 139 3.562557 TGCTTCTTTTTCACCGAAGTACC 59.437 43.478 0.00 0.00 37.17 3.34
139 140 3.813724 GCTTCTTTTTCACCGAAGTACCT 59.186 43.478 0.00 0.00 37.17 3.08
140 141 4.275196 GCTTCTTTTTCACCGAAGTACCTT 59.725 41.667 0.00 0.00 37.17 3.50
141 142 5.467735 GCTTCTTTTTCACCGAAGTACCTTA 59.532 40.000 0.00 0.00 37.17 2.69
142 143 6.148976 GCTTCTTTTTCACCGAAGTACCTTAT 59.851 38.462 0.00 0.00 37.17 1.73
143 144 7.429636 TTCTTTTTCACCGAAGTACCTTATG 57.570 36.000 0.00 0.00 0.00 1.90
144 145 6.761312 TCTTTTTCACCGAAGTACCTTATGA 58.239 36.000 0.00 0.00 0.00 2.15
145 146 7.391620 TCTTTTTCACCGAAGTACCTTATGAT 58.608 34.615 0.00 0.00 0.00 2.45
146 147 7.881232 TCTTTTTCACCGAAGTACCTTATGATT 59.119 33.333 0.00 0.00 0.00 2.57
147 148 7.989416 TTTTCACCGAAGTACCTTATGATTT 57.011 32.000 0.00 0.00 0.00 2.17
148 149 7.605410 TTTCACCGAAGTACCTTATGATTTC 57.395 36.000 0.00 0.00 0.00 2.17
149 150 6.540438 TCACCGAAGTACCTTATGATTTCT 57.460 37.500 0.00 0.00 0.00 2.52
150 151 6.338146 TCACCGAAGTACCTTATGATTTCTG 58.662 40.000 0.00 0.00 0.00 3.02
151 152 5.006746 CACCGAAGTACCTTATGATTTCTGC 59.993 44.000 0.00 0.00 0.00 4.26
152 153 4.511826 CCGAAGTACCTTATGATTTCTGCC 59.488 45.833 0.00 0.00 0.00 4.85
153 154 5.360591 CGAAGTACCTTATGATTTCTGCCT 58.639 41.667 0.00 0.00 0.00 4.75
154 155 5.817816 CGAAGTACCTTATGATTTCTGCCTT 59.182 40.000 0.00 0.00 0.00 4.35
155 156 6.984474 CGAAGTACCTTATGATTTCTGCCTTA 59.016 38.462 0.00 0.00 0.00 2.69
156 157 7.169982 CGAAGTACCTTATGATTTCTGCCTTAG 59.830 40.741 0.00 0.00 0.00 2.18
157 158 6.831976 AGTACCTTATGATTTCTGCCTTAGG 58.168 40.000 0.00 0.00 0.00 2.69
158 159 5.053978 ACCTTATGATTTCTGCCTTAGGG 57.946 43.478 0.00 0.00 0.00 3.53
159 160 4.478686 ACCTTATGATTTCTGCCTTAGGGT 59.521 41.667 0.00 0.00 34.45 4.34
160 161 5.044105 ACCTTATGATTTCTGCCTTAGGGTT 60.044 40.000 0.00 0.00 34.45 4.11
161 162 6.159751 ACCTTATGATTTCTGCCTTAGGGTTA 59.840 38.462 0.00 0.00 34.45 2.85
162 163 6.486993 CCTTATGATTTCTGCCTTAGGGTTAC 59.513 42.308 0.00 0.00 34.45 2.50
163 164 5.717119 ATGATTTCTGCCTTAGGGTTACT 57.283 39.130 0.00 0.00 34.45 2.24
164 165 5.514500 TGATTTCTGCCTTAGGGTTACTT 57.486 39.130 0.00 0.00 34.45 2.24
165 166 6.630203 TGATTTCTGCCTTAGGGTTACTTA 57.370 37.500 0.00 0.00 34.45 2.24
166 167 6.650120 TGATTTCTGCCTTAGGGTTACTTAG 58.350 40.000 0.00 0.00 34.45 2.18
167 168 6.214819 TGATTTCTGCCTTAGGGTTACTTAGT 59.785 38.462 0.00 0.00 34.45 2.24
168 169 6.443995 TTTCTGCCTTAGGGTTACTTAGTT 57.556 37.500 0.00 0.00 34.45 2.24
169 170 5.672421 TCTGCCTTAGGGTTACTTAGTTC 57.328 43.478 0.00 0.00 34.45 3.01
170 171 5.088730 TCTGCCTTAGGGTTACTTAGTTCA 58.911 41.667 0.00 0.00 34.45 3.18
171 172 5.724854 TCTGCCTTAGGGTTACTTAGTTCAT 59.275 40.000 0.00 0.00 34.45 2.57
172 173 6.899075 TCTGCCTTAGGGTTACTTAGTTCATA 59.101 38.462 0.00 0.00 34.45 2.15
173 174 6.881570 TGCCTTAGGGTTACTTAGTTCATAC 58.118 40.000 0.00 0.00 34.45 2.39
174 175 6.670902 TGCCTTAGGGTTACTTAGTTCATACT 59.329 38.462 0.00 0.00 35.17 2.12
175 176 7.840716 TGCCTTAGGGTTACTTAGTTCATACTA 59.159 37.037 0.00 0.00 33.75 1.82
176 177 8.868103 GCCTTAGGGTTACTTAGTTCATACTAT 58.132 37.037 0.00 0.00 34.42 2.12
181 182 9.430399 AGGGTTACTTAGTTCATACTATAGCAA 57.570 33.333 0.00 0.00 36.76 3.91
187 188 8.684520 ACTTAGTTCATACTATAGCAAAGTCGT 58.315 33.333 0.00 0.00 36.76 4.34
188 189 8.851960 TTAGTTCATACTATAGCAAAGTCGTG 57.148 34.615 0.00 0.00 36.76 4.35
189 190 6.864342 AGTTCATACTATAGCAAAGTCGTGT 58.136 36.000 0.00 0.00 31.21 4.49
190 191 6.752351 AGTTCATACTATAGCAAAGTCGTGTG 59.248 38.462 0.00 0.00 31.21 3.82
191 192 6.445357 TCATACTATAGCAAAGTCGTGTGA 57.555 37.500 0.00 0.00 0.00 3.58
192 193 7.039313 TCATACTATAGCAAAGTCGTGTGAT 57.961 36.000 0.00 0.00 0.00 3.06
193 194 7.139392 TCATACTATAGCAAAGTCGTGTGATC 58.861 38.462 0.00 0.00 0.00 2.92
194 195 4.683832 ACTATAGCAAAGTCGTGTGATCC 58.316 43.478 0.00 0.00 0.00 3.36
195 196 3.895232 ATAGCAAAGTCGTGTGATCCT 57.105 42.857 0.00 0.00 0.00 3.24
196 197 2.086054 AGCAAAGTCGTGTGATCCTC 57.914 50.000 0.00 0.00 0.00 3.71
197 198 1.344438 AGCAAAGTCGTGTGATCCTCA 59.656 47.619 0.00 0.00 0.00 3.86
198 199 2.143122 GCAAAGTCGTGTGATCCTCAA 58.857 47.619 0.00 0.00 0.00 3.02
199 200 2.744202 GCAAAGTCGTGTGATCCTCAAT 59.256 45.455 0.00 0.00 0.00 2.57
200 201 3.181516 GCAAAGTCGTGTGATCCTCAATC 60.182 47.826 0.00 0.00 34.72 2.67
201 202 3.961480 AAGTCGTGTGATCCTCAATCA 57.039 42.857 0.00 0.00 42.21 2.57
202 203 3.516981 AGTCGTGTGATCCTCAATCAG 57.483 47.619 0.00 0.00 45.06 2.90
203 204 3.092301 AGTCGTGTGATCCTCAATCAGA 58.908 45.455 0.00 0.00 45.06 3.27
204 205 3.703556 AGTCGTGTGATCCTCAATCAGAT 59.296 43.478 0.00 0.00 45.06 2.90
205 206 3.801050 GTCGTGTGATCCTCAATCAGATG 59.199 47.826 0.00 0.00 45.06 2.90
206 207 3.448660 TCGTGTGATCCTCAATCAGATGT 59.551 43.478 4.83 0.00 45.06 3.06
207 208 4.081476 TCGTGTGATCCTCAATCAGATGTT 60.081 41.667 4.83 0.00 45.06 2.71
208 209 4.633126 CGTGTGATCCTCAATCAGATGTTT 59.367 41.667 0.00 0.00 45.06 2.83
209 210 5.812127 CGTGTGATCCTCAATCAGATGTTTA 59.188 40.000 0.00 0.00 45.06 2.01
210 211 6.019237 CGTGTGATCCTCAATCAGATGTTTAG 60.019 42.308 0.00 0.00 45.06 1.85
211 212 6.259608 GTGTGATCCTCAATCAGATGTTTAGG 59.740 42.308 0.00 0.00 45.06 2.69
212 213 6.070021 TGTGATCCTCAATCAGATGTTTAGGT 60.070 38.462 0.00 0.00 45.06 3.08
213 214 6.825721 GTGATCCTCAATCAGATGTTTAGGTT 59.174 38.462 0.00 0.00 45.06 3.50
214 215 6.825213 TGATCCTCAATCAGATGTTTAGGTTG 59.175 38.462 0.00 0.00 39.52 3.77
215 216 6.373005 TCCTCAATCAGATGTTTAGGTTGA 57.627 37.500 0.00 0.00 0.00 3.18
216 217 6.962182 TCCTCAATCAGATGTTTAGGTTGAT 58.038 36.000 0.00 0.00 0.00 2.57
217 218 6.825213 TCCTCAATCAGATGTTTAGGTTGATG 59.175 38.462 0.00 0.00 0.00 3.07
218 219 6.825213 CCTCAATCAGATGTTTAGGTTGATGA 59.175 38.462 0.00 0.00 0.00 2.92
219 220 7.337689 CCTCAATCAGATGTTTAGGTTGATGAA 59.662 37.037 0.00 0.00 0.00 2.57
220 221 8.812513 TCAATCAGATGTTTAGGTTGATGAAT 57.187 30.769 0.00 0.00 0.00 2.57
221 222 8.896744 TCAATCAGATGTTTAGGTTGATGAATC 58.103 33.333 0.00 0.00 0.00 2.52
222 223 6.908870 TCAGATGTTTAGGTTGATGAATCG 57.091 37.500 0.00 0.00 0.00 3.34
223 224 5.294306 TCAGATGTTTAGGTTGATGAATCGC 59.706 40.000 0.00 0.00 0.00 4.58
224 225 4.576463 AGATGTTTAGGTTGATGAATCGCC 59.424 41.667 0.00 0.00 0.00 5.54
225 226 2.675844 TGTTTAGGTTGATGAATCGCCG 59.324 45.455 0.00 0.00 32.18 6.46
226 227 2.933906 GTTTAGGTTGATGAATCGCCGA 59.066 45.455 0.00 0.00 32.18 5.54
227 228 2.509052 TAGGTTGATGAATCGCCGAG 57.491 50.000 0.00 0.00 32.18 4.63
228 229 0.537188 AGGTTGATGAATCGCCGAGT 59.463 50.000 0.00 0.00 32.18 4.18
229 230 1.066143 AGGTTGATGAATCGCCGAGTT 60.066 47.619 0.00 0.00 32.18 3.01
230 231 1.737793 GGTTGATGAATCGCCGAGTTT 59.262 47.619 0.00 0.00 0.00 2.66
231 232 2.161609 GGTTGATGAATCGCCGAGTTTT 59.838 45.455 0.00 0.00 0.00 2.43
232 233 3.372822 GGTTGATGAATCGCCGAGTTTTA 59.627 43.478 0.00 0.00 0.00 1.52
233 234 4.035208 GGTTGATGAATCGCCGAGTTTTAT 59.965 41.667 0.00 0.00 0.00 1.40
234 235 5.448632 GGTTGATGAATCGCCGAGTTTTATT 60.449 40.000 0.00 0.00 0.00 1.40
235 236 5.155509 TGATGAATCGCCGAGTTTTATTG 57.844 39.130 0.00 0.00 0.00 1.90
236 237 4.634004 TGATGAATCGCCGAGTTTTATTGT 59.366 37.500 0.00 0.00 0.00 2.71
237 238 5.123186 TGATGAATCGCCGAGTTTTATTGTT 59.877 36.000 0.00 0.00 0.00 2.83
238 239 4.717991 TGAATCGCCGAGTTTTATTGTTG 58.282 39.130 0.00 0.00 0.00 3.33
239 240 2.604969 TCGCCGAGTTTTATTGTTGC 57.395 45.000 0.00 0.00 0.00 4.17
240 241 2.147958 TCGCCGAGTTTTATTGTTGCT 58.852 42.857 0.00 0.00 0.00 3.91
241 242 3.327626 TCGCCGAGTTTTATTGTTGCTA 58.672 40.909 0.00 0.00 0.00 3.49
242 243 3.936453 TCGCCGAGTTTTATTGTTGCTAT 59.064 39.130 0.00 0.00 0.00 2.97
243 244 4.028383 CGCCGAGTTTTATTGTTGCTATG 58.972 43.478 0.00 0.00 0.00 2.23
244 245 4.201773 CGCCGAGTTTTATTGTTGCTATGA 60.202 41.667 0.00 0.00 0.00 2.15
245 246 5.636837 GCCGAGTTTTATTGTTGCTATGAA 58.363 37.500 0.00 0.00 0.00 2.57
246 247 6.265577 GCCGAGTTTTATTGTTGCTATGAAT 58.734 36.000 0.00 0.00 0.00 2.57
247 248 6.197096 GCCGAGTTTTATTGTTGCTATGAATG 59.803 38.462 0.00 0.00 0.00 2.67
248 249 7.250569 CCGAGTTTTATTGTTGCTATGAATGT 58.749 34.615 0.00 0.00 0.00 2.71
249 250 8.394877 CCGAGTTTTATTGTTGCTATGAATGTA 58.605 33.333 0.00 0.00 0.00 2.29
250 251 9.767684 CGAGTTTTATTGTTGCTATGAATGTAA 57.232 29.630 0.00 0.00 0.00 2.41
259 260 9.853555 TTGTTGCTATGAATGTAAGTAATTTGG 57.146 29.630 0.00 0.00 0.00 3.28
260 261 9.237187 TGTTGCTATGAATGTAAGTAATTTGGA 57.763 29.630 0.00 0.00 0.00 3.53
263 264 8.394877 TGCTATGAATGTAAGTAATTTGGAACG 58.605 33.333 0.00 0.00 0.00 3.95
264 265 7.855904 GCTATGAATGTAAGTAATTTGGAACGG 59.144 37.037 0.00 0.00 0.00 4.44
265 266 7.931578 ATGAATGTAAGTAATTTGGAACGGA 57.068 32.000 0.00 0.00 0.00 4.69
266 267 7.372451 TGAATGTAAGTAATTTGGAACGGAG 57.628 36.000 0.00 0.00 0.00 4.63
267 268 6.373216 TGAATGTAAGTAATTTGGAACGGAGG 59.627 38.462 0.00 0.00 0.00 4.30
268 269 4.581868 TGTAAGTAATTTGGAACGGAGGG 58.418 43.478 0.00 0.00 0.00 4.30
269 270 4.286549 TGTAAGTAATTTGGAACGGAGGGA 59.713 41.667 0.00 0.00 0.00 4.20
270 271 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
271 272 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
272 273 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
273 274 4.533311 AGTAATTTGGAACGGAGGGAGTAA 59.467 41.667 0.00 0.00 0.00 2.24
274 275 4.586306 AATTTGGAACGGAGGGAGTAAT 57.414 40.909 0.00 0.00 0.00 1.89
275 276 4.586306 ATTTGGAACGGAGGGAGTAATT 57.414 40.909 0.00 0.00 0.00 1.40
276 277 3.343941 TTGGAACGGAGGGAGTAATTG 57.656 47.619 0.00 0.00 0.00 2.32
277 278 1.557832 TGGAACGGAGGGAGTAATTGG 59.442 52.381 0.00 0.00 0.00 3.16
278 279 1.558294 GGAACGGAGGGAGTAATTGGT 59.442 52.381 0.00 0.00 0.00 3.67
279 280 2.629051 GAACGGAGGGAGTAATTGGTG 58.371 52.381 0.00 0.00 0.00 4.17
280 281 1.946984 ACGGAGGGAGTAATTGGTGA 58.053 50.000 0.00 0.00 0.00 4.02
281 282 2.262637 ACGGAGGGAGTAATTGGTGAA 58.737 47.619 0.00 0.00 0.00 3.18
282 283 2.844348 ACGGAGGGAGTAATTGGTGAAT 59.156 45.455 0.00 0.00 0.00 2.57
283 284 3.206150 CGGAGGGAGTAATTGGTGAATG 58.794 50.000 0.00 0.00 0.00 2.67
284 285 3.370527 CGGAGGGAGTAATTGGTGAATGT 60.371 47.826 0.00 0.00 0.00 2.71
285 286 4.141801 CGGAGGGAGTAATTGGTGAATGTA 60.142 45.833 0.00 0.00 0.00 2.29
286 287 5.628200 CGGAGGGAGTAATTGGTGAATGTAA 60.628 44.000 0.00 0.00 0.00 2.41
287 288 5.823045 GGAGGGAGTAATTGGTGAATGTAAG 59.177 44.000 0.00 0.00 0.00 2.34
288 289 5.755849 AGGGAGTAATTGGTGAATGTAAGG 58.244 41.667 0.00 0.00 0.00 2.69
289 290 5.491078 AGGGAGTAATTGGTGAATGTAAGGA 59.509 40.000 0.00 0.00 0.00 3.36
290 291 5.589050 GGGAGTAATTGGTGAATGTAAGGAC 59.411 44.000 0.00 0.00 0.00 3.85
291 292 5.293569 GGAGTAATTGGTGAATGTAAGGACG 59.706 44.000 0.00 0.00 0.00 4.79
292 293 4.634443 AGTAATTGGTGAATGTAAGGACGC 59.366 41.667 0.00 0.00 0.00 5.19
293 294 1.434555 TTGGTGAATGTAAGGACGCG 58.565 50.000 3.53 3.53 0.00 6.01
294 295 0.604073 TGGTGAATGTAAGGACGCGA 59.396 50.000 15.93 0.00 0.00 5.87
295 296 1.001068 TGGTGAATGTAAGGACGCGAA 59.999 47.619 15.93 0.00 0.00 4.70
296 297 1.392510 GGTGAATGTAAGGACGCGAAC 59.607 52.381 15.93 4.59 0.00 3.95
297 298 2.334838 GTGAATGTAAGGACGCGAACT 58.665 47.619 15.93 7.41 0.00 3.01
298 299 2.735134 GTGAATGTAAGGACGCGAACTT 59.265 45.455 15.93 18.62 0.00 2.66
299 300 3.922240 GTGAATGTAAGGACGCGAACTTA 59.078 43.478 15.93 17.52 0.00 2.24
300 301 4.565564 GTGAATGTAAGGACGCGAACTTAT 59.434 41.667 22.61 12.20 32.40 1.73
301 302 4.565166 TGAATGTAAGGACGCGAACTTATG 59.435 41.667 22.61 0.00 32.40 1.90
302 303 2.883574 TGTAAGGACGCGAACTTATGG 58.116 47.619 22.61 0.00 32.40 2.74
303 304 1.591619 GTAAGGACGCGAACTTATGGC 59.408 52.381 22.61 11.69 32.40 4.40
304 305 0.249398 AAGGACGCGAACTTATGGCT 59.751 50.000 15.93 0.00 0.00 4.75
305 306 0.179108 AGGACGCGAACTTATGGCTC 60.179 55.000 15.93 0.00 0.00 4.70
306 307 0.179108 GGACGCGAACTTATGGCTCT 60.179 55.000 15.93 0.00 0.00 4.09
307 308 1.201343 GACGCGAACTTATGGCTCTC 58.799 55.000 15.93 0.00 0.00 3.20
308 309 0.525668 ACGCGAACTTATGGCTCTCG 60.526 55.000 15.93 0.00 0.00 4.04
309 310 1.209275 CGCGAACTTATGGCTCTCGG 61.209 60.000 0.00 0.00 0.00 4.63
310 311 0.876342 GCGAACTTATGGCTCTCGGG 60.876 60.000 0.00 0.00 0.00 5.14
311 312 0.460311 CGAACTTATGGCTCTCGGGT 59.540 55.000 0.00 0.00 0.00 5.28
312 313 1.679680 CGAACTTATGGCTCTCGGGTA 59.320 52.381 0.00 0.00 0.00 3.69
313 314 2.543238 CGAACTTATGGCTCTCGGGTAC 60.543 54.545 0.00 0.00 0.00 3.34
326 327 3.543641 GGTACCCGCGCACCCTAT 61.544 66.667 8.75 0.00 0.00 2.57
327 328 2.202395 GGTACCCGCGCACCCTATA 61.202 63.158 8.75 0.00 0.00 1.31
328 329 1.538687 GGTACCCGCGCACCCTATAT 61.539 60.000 8.75 0.00 0.00 0.86
329 330 0.389426 GTACCCGCGCACCCTATATG 60.389 60.000 8.75 0.00 0.00 1.78
330 331 2.162338 TACCCGCGCACCCTATATGC 62.162 60.000 8.75 0.00 39.81 3.14
403 404 7.959658 TTTGGATCAAACATGATCAGGTATT 57.040 32.000 14.25 7.65 44.73 1.89
404 405 7.572523 TTGGATCAAACATGATCAGGTATTC 57.427 36.000 14.25 3.30 44.73 1.75
405 406 6.903516 TGGATCAAACATGATCAGGTATTCT 58.096 36.000 14.25 0.00 44.73 2.40
406 407 8.033178 TGGATCAAACATGATCAGGTATTCTA 57.967 34.615 14.25 4.00 44.73 2.10
407 408 7.933577 TGGATCAAACATGATCAGGTATTCTAC 59.066 37.037 14.25 4.52 44.73 2.59
408 409 8.153550 GGATCAAACATGATCAGGTATTCTACT 58.846 37.037 14.25 0.00 44.73 2.57
409 410 9.202273 GATCAAACATGATCAGGTATTCTACTC 57.798 37.037 14.25 1.64 43.00 2.59
410 411 7.203218 TCAAACATGATCAGGTATTCTACTCG 58.797 38.462 14.25 0.00 0.00 4.18
411 412 6.716934 AACATGATCAGGTATTCTACTCGT 57.283 37.500 14.25 0.00 0.00 4.18
412 413 6.320494 ACATGATCAGGTATTCTACTCGTC 57.680 41.667 12.06 0.00 0.00 4.20
413 414 6.065374 ACATGATCAGGTATTCTACTCGTCT 58.935 40.000 12.06 0.00 0.00 4.18
414 415 7.225011 ACATGATCAGGTATTCTACTCGTCTA 58.775 38.462 12.06 0.00 0.00 2.59
415 416 7.720074 ACATGATCAGGTATTCTACTCGTCTAA 59.280 37.037 12.06 0.00 0.00 2.10
416 417 8.568794 CATGATCAGGTATTCTACTCGTCTAAA 58.431 37.037 0.09 0.00 0.00 1.85
417 418 8.515695 TGATCAGGTATTCTACTCGTCTAAAA 57.484 34.615 0.00 0.00 0.00 1.52
418 419 8.963725 TGATCAGGTATTCTACTCGTCTAAAAA 58.036 33.333 0.00 0.00 0.00 1.94
419 420 9.453325 GATCAGGTATTCTACTCGTCTAAAAAG 57.547 37.037 0.00 0.00 0.00 2.27
420 421 8.345724 TCAGGTATTCTACTCGTCTAAAAAGT 57.654 34.615 0.00 0.00 0.00 2.66
421 422 8.800332 TCAGGTATTCTACTCGTCTAAAAAGTT 58.200 33.333 0.00 0.00 0.00 2.66
422 423 9.420551 CAGGTATTCTACTCGTCTAAAAAGTTT 57.579 33.333 0.00 0.00 0.00 2.66
423 424 9.420551 AGGTATTCTACTCGTCTAAAAAGTTTG 57.579 33.333 0.00 0.00 0.00 2.93
424 425 8.654215 GGTATTCTACTCGTCTAAAAAGTTTGG 58.346 37.037 0.00 0.00 0.00 3.28
425 426 9.415544 GTATTCTACTCGTCTAAAAAGTTTGGA 57.584 33.333 0.00 0.00 0.00 3.53
426 427 7.704789 TTCTACTCGTCTAAAAAGTTTGGAC 57.295 36.000 7.05 7.05 0.00 4.02
427 428 6.808829 TCTACTCGTCTAAAAAGTTTGGACA 58.191 36.000 14.87 4.53 0.00 4.02
428 429 7.267128 TCTACTCGTCTAAAAAGTTTGGACAA 58.733 34.615 14.87 0.00 0.00 3.18
429 430 6.359480 ACTCGTCTAAAAAGTTTGGACAAG 57.641 37.500 14.87 9.79 0.00 3.16
430 431 6.110707 ACTCGTCTAAAAAGTTTGGACAAGA 58.889 36.000 14.87 6.42 0.00 3.02
431 432 6.596497 ACTCGTCTAAAAAGTTTGGACAAGAA 59.404 34.615 14.87 0.68 0.00 2.52
432 433 7.120138 ACTCGTCTAAAAAGTTTGGACAAGAAA 59.880 33.333 14.87 0.00 0.00 2.52
433 434 7.992008 TCGTCTAAAAAGTTTGGACAAGAAAT 58.008 30.769 14.87 0.00 0.00 2.17
434 435 7.913297 TCGTCTAAAAAGTTTGGACAAGAAATG 59.087 33.333 14.87 0.92 0.00 2.32
435 436 7.913297 CGTCTAAAAAGTTTGGACAAGAAATGA 59.087 33.333 14.87 0.00 0.00 2.57
436 437 9.750125 GTCTAAAAAGTTTGGACAAGAAATGAT 57.250 29.630 11.09 0.00 0.00 2.45
440 441 9.617523 AAAAAGTTTGGACAAGAAATGATTCAT 57.382 25.926 0.00 0.00 38.06 2.57
444 445 9.865321 AGTTTGGACAAGAAATGATTCATATTG 57.135 29.630 13.48 13.48 38.06 1.90
445 446 9.859427 GTTTGGACAAGAAATGATTCATATTGA 57.141 29.630 18.57 2.66 38.06 2.57
446 447 9.859427 TTTGGACAAGAAATGATTCATATTGAC 57.141 29.630 18.57 14.37 38.06 3.18
447 448 8.812513 TGGACAAGAAATGATTCATATTGACT 57.187 30.769 18.57 5.98 38.06 3.41
448 449 9.246670 TGGACAAGAAATGATTCATATTGACTT 57.753 29.630 18.57 10.00 38.06 3.01
449 450 9.727627 GGACAAGAAATGATTCATATTGACTTC 57.272 33.333 18.57 10.48 38.06 3.01
452 453 9.218359 CAAGAAATGATTCATATTGACTTCACG 57.782 33.333 0.00 0.00 38.06 4.35
453 454 7.923888 AGAAATGATTCATATTGACTTCACGG 58.076 34.615 0.00 0.00 38.06 4.94
454 455 5.679734 ATGATTCATATTGACTTCACGGC 57.320 39.130 0.00 0.00 0.00 5.68
455 456 4.512484 TGATTCATATTGACTTCACGGCA 58.488 39.130 0.00 0.00 0.00 5.69
456 457 4.940654 TGATTCATATTGACTTCACGGCAA 59.059 37.500 0.00 0.00 0.00 4.52
457 458 5.414144 TGATTCATATTGACTTCACGGCAAA 59.586 36.000 0.00 0.00 0.00 3.68
458 459 5.697473 TTCATATTGACTTCACGGCAAAA 57.303 34.783 0.00 0.00 0.00 2.44
459 460 5.697473 TCATATTGACTTCACGGCAAAAA 57.303 34.783 0.00 0.00 0.00 1.94
486 487 8.804743 AGACAAGTTTATGACGACAATATAACG 58.195 33.333 0.00 0.00 0.00 3.18
487 488 8.470040 ACAAGTTTATGACGACAATATAACGT 57.530 30.769 0.00 0.00 42.84 3.99
488 489 8.377681 ACAAGTTTATGACGACAATATAACGTG 58.622 33.333 0.00 13.51 40.29 4.49
489 490 8.377681 CAAGTTTATGACGACAATATAACGTGT 58.622 33.333 0.00 0.00 40.29 4.49
490 491 9.571810 AAGTTTATGACGACAATATAACGTGTA 57.428 29.630 0.00 0.00 40.29 2.90
491 492 9.740239 AGTTTATGACGACAATATAACGTGTAT 57.260 29.630 0.00 0.00 40.29 2.29
496 497 9.817365 ATGACGACAATATAACGTGTATAGTAC 57.183 33.333 0.00 0.00 40.29 2.73
497 498 9.045223 TGACGACAATATAACGTGTATAGTACT 57.955 33.333 0.00 0.00 40.29 2.73
498 499 9.869844 GACGACAATATAACGTGTATAGTACTT 57.130 33.333 0.00 0.00 40.29 2.24
499 500 9.655769 ACGACAATATAACGTGTATAGTACTTG 57.344 33.333 0.00 0.00 38.79 3.16
500 501 9.655769 CGACAATATAACGTGTATAGTACTTGT 57.344 33.333 0.00 2.25 0.00 3.16
508 509 7.756395 ACGTGTATAGTACTTGTATATGGCT 57.244 36.000 0.00 0.00 0.00 4.75
509 510 8.174733 ACGTGTATAGTACTTGTATATGGCTT 57.825 34.615 0.00 0.00 0.00 4.35
510 511 8.636213 ACGTGTATAGTACTTGTATATGGCTTT 58.364 33.333 0.00 0.00 0.00 3.51
511 512 9.472361 CGTGTATAGTACTTGTATATGGCTTTT 57.528 33.333 0.00 0.00 0.00 2.27
538 539 3.117491 GAATCTTCGATCCAGGATGCA 57.883 47.619 6.70 0.00 31.97 3.96
539 540 3.470709 GAATCTTCGATCCAGGATGCAA 58.529 45.455 6.70 0.00 31.97 4.08
540 541 2.315925 TCTTCGATCCAGGATGCAAC 57.684 50.000 6.70 0.00 31.97 4.17
541 542 0.933097 CTTCGATCCAGGATGCAACG 59.067 55.000 6.70 4.15 31.97 4.10
542 543 0.534873 TTCGATCCAGGATGCAACGA 59.465 50.000 6.70 6.78 32.66 3.85
543 544 0.534873 TCGATCCAGGATGCAACGAA 59.465 50.000 6.70 0.00 31.93 3.85
544 545 1.066502 TCGATCCAGGATGCAACGAAA 60.067 47.619 6.70 0.00 31.93 3.46
545 546 1.328680 CGATCCAGGATGCAACGAAAG 59.671 52.381 6.70 0.00 31.97 2.62
546 547 2.359900 GATCCAGGATGCAACGAAAGT 58.640 47.619 6.70 0.00 40.81 2.66
547 548 1.808411 TCCAGGATGCAACGAAAGTC 58.192 50.000 0.00 0.00 38.18 3.01
548 549 1.071542 TCCAGGATGCAACGAAAGTCA 59.928 47.619 0.00 0.00 38.18 3.41
549 550 2.086869 CCAGGATGCAACGAAAGTCAT 58.913 47.619 0.00 0.00 38.18 3.06
550 551 2.489329 CCAGGATGCAACGAAAGTCATT 59.511 45.455 0.00 0.00 38.18 2.57
551 552 3.426695 CCAGGATGCAACGAAAGTCATTC 60.427 47.826 0.00 0.00 38.18 2.67
552 553 5.634282 CCAGGATGCAACGAAAGTCATTCT 61.634 45.833 0.00 0.00 38.18 2.40
553 554 7.373531 CCAGGATGCAACGAAAGTCATTCTC 62.374 48.000 0.00 0.00 38.18 2.87
562 563 6.900568 ACGAAAGTCATTCTCTGATGAATC 57.099 37.500 0.00 0.00 44.19 2.52
563 564 6.638610 ACGAAAGTCATTCTCTGATGAATCT 58.361 36.000 0.00 0.00 44.19 2.40
564 565 7.102346 ACGAAAGTCATTCTCTGATGAATCTT 58.898 34.615 0.00 0.00 44.19 2.40
565 566 7.605691 ACGAAAGTCATTCTCTGATGAATCTTT 59.394 33.333 0.00 11.62 44.19 2.52
566 567 8.449397 CGAAAGTCATTCTCTGATGAATCTTTT 58.551 33.333 12.33 8.45 37.75 2.27
594 595 9.817809 ATACGACTACAATACTTGATCATGTTT 57.182 29.630 18.30 8.93 0.00 2.83
595 596 7.963981 ACGACTACAATACTTGATCATGTTTG 58.036 34.615 18.30 20.28 0.00 2.93
596 597 7.602644 ACGACTACAATACTTGATCATGTTTGT 59.397 33.333 26.23 26.23 0.00 2.83
597 598 8.443160 CGACTACAATACTTGATCATGTTTGTT 58.557 33.333 27.13 18.95 0.00 2.83
600 601 9.988350 CTACAATACTTGATCATGTTTGTTACC 57.012 33.333 27.13 0.00 0.00 2.85
601 602 8.402798 ACAATACTTGATCATGTTTGTTACCA 57.597 30.769 18.30 0.00 0.00 3.25
602 603 8.855110 ACAATACTTGATCATGTTTGTTACCAA 58.145 29.630 18.30 0.00 0.00 3.67
603 604 9.689976 CAATACTTGATCATGTTTGTTACCAAA 57.310 29.630 18.30 0.00 38.22 3.28
668 669 3.972227 GCATATAGGGTGCGCTGG 58.028 61.111 9.73 0.00 32.29 4.85
669 670 1.071471 GCATATAGGGTGCGCTGGT 59.929 57.895 9.73 0.00 32.29 4.00
670 671 0.320374 GCATATAGGGTGCGCTGGTA 59.680 55.000 9.73 0.00 32.29 3.25
671 672 1.066143 GCATATAGGGTGCGCTGGTAT 60.066 52.381 9.73 3.22 32.29 2.73
672 673 2.893637 CATATAGGGTGCGCTGGTATC 58.106 52.381 9.73 0.00 0.00 2.24
673 674 1.263356 TATAGGGTGCGCTGGTATCC 58.737 55.000 9.73 0.00 0.00 2.59
674 675 0.762842 ATAGGGTGCGCTGGTATCCA 60.763 55.000 9.73 0.00 0.00 3.41
698 699 6.262193 GGTTTTCCTTCATATTTTCCGTGA 57.738 37.500 0.00 0.00 36.94 4.35
699 700 6.683715 GGTTTTCCTTCATATTTTCCGTGAA 58.316 36.000 0.00 0.00 36.94 3.18
700 701 7.320399 GGTTTTCCTTCATATTTTCCGTGAAT 58.680 34.615 0.00 0.00 36.94 2.57
701 702 7.275560 GGTTTTCCTTCATATTTTCCGTGAATG 59.724 37.037 0.00 0.00 36.94 2.67
702 703 7.461182 TTTCCTTCATATTTTCCGTGAATGT 57.539 32.000 0.00 0.00 32.05 2.71
703 704 8.568676 TTTCCTTCATATTTTCCGTGAATGTA 57.431 30.769 0.00 0.00 32.05 2.29
704 705 8.568676 TTCCTTCATATTTTCCGTGAATGTAA 57.431 30.769 0.00 0.00 32.05 2.41
705 706 8.208718 TCCTTCATATTTTCCGTGAATGTAAG 57.791 34.615 0.00 0.00 32.05 2.34
706 707 7.827236 TCCTTCATATTTTCCGTGAATGTAAGT 59.173 33.333 0.00 0.00 32.05 2.24
707 708 9.104965 CCTTCATATTTTCCGTGAATGTAAGTA 57.895 33.333 0.00 0.00 32.05 2.24
716 717 9.562583 TTTCCGTGAATGTAAGTATTATTTTGC 57.437 29.630 0.00 0.00 30.46 3.68
717 718 8.500753 TCCGTGAATGTAAGTATTATTTTGCT 57.499 30.769 0.00 0.00 30.46 3.91
718 719 9.602568 TCCGTGAATGTAAGTATTATTTTGCTA 57.397 29.630 0.00 0.00 30.46 3.49
719 720 9.646336 CCGTGAATGTAAGTATTATTTTGCTAC 57.354 33.333 0.00 0.00 30.46 3.58
814 815 5.957842 TCAGTTTTGTCCATACATTCACC 57.042 39.130 0.00 0.00 34.97 4.02
815 816 5.630121 TCAGTTTTGTCCATACATTCACCT 58.370 37.500 0.00 0.00 34.97 4.00
816 817 6.068010 TCAGTTTTGTCCATACATTCACCTT 58.932 36.000 0.00 0.00 34.97 3.50
817 818 6.016360 TCAGTTTTGTCCATACATTCACCTTG 60.016 38.462 0.00 0.00 34.97 3.61
825 826 6.983890 GTCCATACATTCACCTTGTTTGTTTT 59.016 34.615 0.00 0.00 0.00 2.43
859 860 2.753043 CCCATGTGCAGCCTCACC 60.753 66.667 0.00 0.00 36.17 4.02
910 911 0.475906 GTATGCAGAGCCCATCCCTT 59.524 55.000 0.00 0.00 0.00 3.95
933 939 0.381089 GTCCATACCCAGAGTCGTCG 59.619 60.000 0.00 0.00 0.00 5.12
937 943 1.743958 CATACCCAGAGTCGTCGTCTT 59.256 52.381 0.00 0.00 0.00 3.01
938 944 1.446907 TACCCAGAGTCGTCGTCTTC 58.553 55.000 0.00 0.00 0.00 2.87
939 945 0.250814 ACCCAGAGTCGTCGTCTTCT 60.251 55.000 0.00 0.00 0.00 2.85
940 946 0.882474 CCCAGAGTCGTCGTCTTCTT 59.118 55.000 0.00 0.00 0.00 2.52
941 947 1.135632 CCCAGAGTCGTCGTCTTCTTC 60.136 57.143 0.00 0.00 0.00 2.87
942 948 1.135632 CCAGAGTCGTCGTCTTCTTCC 60.136 57.143 0.00 0.00 0.00 3.46
943 949 1.535896 CAGAGTCGTCGTCTTCTTCCA 59.464 52.381 0.00 0.00 0.00 3.53
959 972 2.202987 CATCCAGCTGGGCGAGAC 60.203 66.667 32.23 0.00 36.21 3.36
1012 1025 4.176752 CCGGAACCCTAGCCAGGC 62.177 72.222 1.84 1.84 41.08 4.85
1216 1229 1.676635 TGAGTACTCCCACGTCCCG 60.677 63.158 20.11 0.00 0.00 5.14
1217 1230 1.676967 GAGTACTCCCACGTCCCGT 60.677 63.158 12.13 0.00 42.36 5.28
1218 1231 1.652167 GAGTACTCCCACGTCCCGTC 61.652 65.000 12.13 0.00 38.32 4.79
1226 1239 4.766632 ACGTCCCGTCCCCTACCC 62.767 72.222 0.00 0.00 33.69 3.69
1238 1251 1.752833 CCTACCCGCCTGTTATCCC 59.247 63.158 0.00 0.00 0.00 3.85
1239 1252 1.752833 CTACCCGCCTGTTATCCCC 59.247 63.158 0.00 0.00 0.00 4.81
1240 1253 2.095978 CTACCCGCCTGTTATCCCCG 62.096 65.000 0.00 0.00 0.00 5.73
1389 1408 0.391927 ATTCGGCGGTGAAATTCGGA 60.392 50.000 7.21 0.00 0.00 4.55
1408 1427 2.105128 CCGTCTCGTGGATCCTGC 59.895 66.667 14.23 5.06 0.00 4.85
1547 1566 1.066587 GTAGAGTAGCCGCAGCCAG 59.933 63.158 0.00 0.00 41.25 4.85
1599 1618 4.614993 CGTCCCGTTGTTATTGAGCAAATT 60.615 41.667 0.00 0.00 0.00 1.82
1768 1793 5.880332 TGTAATCTCATGGTTTTACTGCTCC 59.120 40.000 0.00 0.00 0.00 4.70
1783 1808 3.578716 ACTGCTCCTGCTGTTTAGAACTA 59.421 43.478 0.00 0.00 46.76 2.24
1784 1809 4.180057 CTGCTCCTGCTGTTTAGAACTAG 58.820 47.826 0.00 0.00 40.48 2.57
1785 1810 3.578716 TGCTCCTGCTGTTTAGAACTAGT 59.421 43.478 0.00 0.00 40.48 2.57
1786 1811 4.770531 TGCTCCTGCTGTTTAGAACTAGTA 59.229 41.667 0.00 0.00 40.48 1.82
1787 1812 5.105716 TGCTCCTGCTGTTTAGAACTAGTAG 60.106 44.000 0.00 0.00 40.48 2.57
1788 1813 5.105675 GCTCCTGCTGTTTAGAACTAGTAGT 60.106 44.000 0.00 0.00 36.03 2.73
1789 1814 6.095160 GCTCCTGCTGTTTAGAACTAGTAGTA 59.905 42.308 2.50 0.00 36.03 1.82
1790 1815 7.627298 TCCTGCTGTTTAGAACTAGTAGTAG 57.373 40.000 2.50 2.87 0.00 2.57
1791 1816 6.602406 TCCTGCTGTTTAGAACTAGTAGTAGG 59.398 42.308 14.31 14.31 0.00 3.18
1820 1847 3.084786 GCCAAGCACTTTTCCAGATAGT 58.915 45.455 0.00 0.00 0.00 2.12
1831 1858 7.661847 CACTTTTCCAGATAGTTTGGTTCTAGT 59.338 37.037 0.00 0.00 37.02 2.57
1837 1864 7.444183 TCCAGATAGTTTGGTTCTAGTTTGTTG 59.556 37.037 0.00 0.00 37.02 3.33
1838 1865 7.444183 CCAGATAGTTTGGTTCTAGTTTGTTGA 59.556 37.037 0.00 0.00 0.00 3.18
1842 1870 6.805713 AGTTTGGTTCTAGTTTGTTGAATGG 58.194 36.000 0.00 0.00 0.00 3.16
1845 1873 5.197451 TGGTTCTAGTTTGTTGAATGGTGT 58.803 37.500 0.00 0.00 0.00 4.16
1853 1881 7.288810 AGTTTGTTGAATGGTGTATCATGTT 57.711 32.000 0.00 0.00 0.00 2.71
1856 1884 7.465353 TTGTTGAATGGTGTATCATGTTCAT 57.535 32.000 0.00 0.00 0.00 2.57
1857 1885 7.087409 TGTTGAATGGTGTATCATGTTCATC 57.913 36.000 0.00 0.00 0.00 2.92
1863 1891 6.741992 TGGTGTATCATGTTCATCAAAGTC 57.258 37.500 0.00 0.00 0.00 3.01
1864 1892 5.647658 TGGTGTATCATGTTCATCAAAGTCC 59.352 40.000 0.00 0.00 0.00 3.85
1961 1995 4.675510 CACATCCTATTTGCATGGACAAC 58.324 43.478 0.00 0.00 32.16 3.32
1980 2014 6.257849 GGACAACAAGTTTGATTCCTTTTTCC 59.742 38.462 0.00 0.00 0.00 3.13
1993 2027 7.559897 TGATTCCTTTTTCCTGTTCAACTTACT 59.440 33.333 0.00 0.00 0.00 2.24
1999 2033 9.333724 CTTTTTCCTGTTCAACTTACTTACCTA 57.666 33.333 0.00 0.00 0.00 3.08
2112 2152 2.325583 TTAATGATGACTCGTGGCCC 57.674 50.000 0.00 0.00 0.00 5.80
2148 2188 1.742831 CTTGTCTCTGGAGAGGTCTCG 59.257 57.143 3.83 0.00 43.76 4.04
2195 2235 8.407064 ACCGTGAGTACATTTTCATTTTGTAAA 58.593 29.630 0.00 0.00 0.00 2.01
2222 2262 2.373169 TCTCTGCTTTTGGTGACTCCAT 59.627 45.455 0.00 0.00 46.60 3.41
2239 2279 6.069673 TGACTCCATTCCACTATGGTGTTATT 60.070 38.462 8.53 0.00 46.74 1.40
2240 2280 6.731467 ACTCCATTCCACTATGGTGTTATTT 58.269 36.000 8.53 0.00 45.37 1.40
2241 2281 6.603201 ACTCCATTCCACTATGGTGTTATTTG 59.397 38.462 8.53 0.00 45.37 2.32
2245 2285 8.310382 CCATTCCACTATGGTGTTATTTGAAAA 58.690 33.333 8.53 0.00 40.20 2.29
2246 2286 9.703892 CATTCCACTATGGTGTTATTTGAAAAA 57.296 29.630 8.53 0.00 41.53 1.94
2247 2287 9.705290 ATTCCACTATGGTGTTATTTGAAAAAC 57.295 29.630 8.53 0.00 41.53 2.43
2248 2288 8.472007 TCCACTATGGTGTTATTTGAAAAACT 57.528 30.769 8.53 0.00 41.53 2.66
2249 2289 9.575868 TCCACTATGGTGTTATTTGAAAAACTA 57.424 29.630 8.53 0.00 41.53 2.24
2358 2398 1.527433 GCAGGTTCCAAGCTTCACCC 61.527 60.000 13.25 4.58 33.87 4.61
2464 2504 9.889128 TGTCTCAAATGATATACATTCACTTGA 57.111 29.630 0.00 0.39 46.90 3.02
2497 2554 1.964223 TCACCAGTGTCAACTCCTCTC 59.036 52.381 0.00 0.00 32.98 3.20
2516 2573 6.037172 TCCTCTCGCTAAACTGATAATTTTGC 59.963 38.462 0.00 0.00 35.36 3.68
2519 2576 6.371548 TCTCGCTAAACTGATAATTTTGCACT 59.628 34.615 0.00 0.00 37.56 4.40
2520 2577 6.314018 TCGCTAAACTGATAATTTTGCACTG 58.686 36.000 0.00 0.00 37.56 3.66
2522 2579 7.118535 TCGCTAAACTGATAATTTTGCACTGTA 59.881 33.333 0.00 0.00 37.56 2.74
2523 2580 7.216317 CGCTAAACTGATAATTTTGCACTGTAC 59.784 37.037 0.00 0.00 37.56 2.90
2548 2605 0.470341 GCCTACTCAACTCCCATCCC 59.530 60.000 0.00 0.00 0.00 3.85
2687 2745 1.065126 GTGGGGCTGATACTCTTGCTT 60.065 52.381 0.00 0.00 0.00 3.91
2707 2767 4.096081 GCTTCTGGAAATCTGGATTCACTG 59.904 45.833 0.00 0.00 0.00 3.66
2903 2963 3.393472 GAGCCCATCGAAATCTGCT 57.607 52.632 0.00 0.00 0.00 4.24
3302 3408 4.081406 TCTTGGCTACATTGATGCAACTT 58.919 39.130 0.00 0.00 0.00 2.66
3311 3417 1.608055 TGATGCAACTTCTGGGTGTG 58.392 50.000 0.00 0.00 34.56 3.82
3435 3549 6.157994 TCCTAGCAAAGTACATTACCCTCATT 59.842 38.462 0.00 0.00 0.00 2.57
3561 3677 6.351202 CCCTTATCTTTTTGCATTGGTGATGA 60.351 38.462 0.00 0.00 38.03 2.92
3593 3709 8.598041 GTCACAAGGGATATACAAGGAGATATT 58.402 37.037 0.00 0.00 0.00 1.28
3594 3710 9.170890 TCACAAGGGATATACAAGGAGATATTT 57.829 33.333 0.00 0.00 0.00 1.40
3807 3923 0.531200 GGTGGTACCTCAGAAGGACG 59.469 60.000 14.36 0.00 46.67 4.79
3818 3934 0.245813 AGAAGGACGCCTTTCGGTAC 59.754 55.000 11.62 0.00 44.82 3.34
3881 3997 2.159430 TGTGAACCATCGAATCAAAGCG 59.841 45.455 0.00 0.00 0.00 4.68
3884 4000 0.748005 ACCATCGAATCAAAGCGGGG 60.748 55.000 0.00 0.00 0.00 5.73
3897 4013 3.077907 CGGGGTGGATGAAGTGGT 58.922 61.111 0.00 0.00 0.00 4.16
3991 4107 1.066787 TCGACCCGCAATGTTGTATGA 60.067 47.619 0.00 0.00 0.00 2.15
4044 4160 0.753867 TCAACAGTTAGGTGTGGCGA 59.246 50.000 0.00 0.00 35.97 5.54
4055 4171 1.537348 GGTGTGGCGAAGATGCGTATA 60.537 52.381 0.00 0.00 35.06 1.47
4110 4226 5.819825 TCGAGTCCGGAATGATGATATAG 57.180 43.478 10.26 0.00 36.24 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.883756 TCTCCAATATGTGATTGTTGCTAACA 59.116 34.615 0.00 0.00 40.21 2.41
5 6 6.883756 TGTCTCCAATATGTGATTGTTGCTAA 59.116 34.615 0.00 0.00 0.00 3.09
6 7 6.413892 TGTCTCCAATATGTGATTGTTGCTA 58.586 36.000 0.00 0.00 0.00 3.49
7 8 5.255687 TGTCTCCAATATGTGATTGTTGCT 58.744 37.500 0.00 0.00 0.00 3.91
8 9 5.565592 TGTCTCCAATATGTGATTGTTGC 57.434 39.130 0.00 0.00 0.00 4.17
9 10 7.149569 AGTTGTCTCCAATATGTGATTGTTG 57.850 36.000 0.00 0.00 32.11 3.33
10 11 7.765695 AAGTTGTCTCCAATATGTGATTGTT 57.234 32.000 0.00 0.00 32.11 2.83
11 12 7.448161 TCAAAGTTGTCTCCAATATGTGATTGT 59.552 33.333 0.00 0.00 32.11 2.71
12 13 7.819644 TCAAAGTTGTCTCCAATATGTGATTG 58.180 34.615 0.00 0.00 32.11 2.67
13 14 8.299570 GTTCAAAGTTGTCTCCAATATGTGATT 58.700 33.333 0.00 0.00 32.11 2.57
14 15 7.448161 TGTTCAAAGTTGTCTCCAATATGTGAT 59.552 33.333 0.00 0.00 32.11 3.06
15 16 6.770303 TGTTCAAAGTTGTCTCCAATATGTGA 59.230 34.615 0.00 0.00 32.11 3.58
16 17 6.969366 TGTTCAAAGTTGTCTCCAATATGTG 58.031 36.000 0.00 0.00 32.11 3.21
17 18 7.765695 ATGTTCAAAGTTGTCTCCAATATGT 57.234 32.000 0.00 0.00 32.11 2.29
18 19 7.062605 GCAATGTTCAAAGTTGTCTCCAATATG 59.937 37.037 0.00 0.00 32.11 1.78
19 20 7.092716 GCAATGTTCAAAGTTGTCTCCAATAT 58.907 34.615 0.00 0.00 32.11 1.28
20 21 6.040278 TGCAATGTTCAAAGTTGTCTCCAATA 59.960 34.615 0.00 0.00 32.11 1.90
21 22 5.163426 TGCAATGTTCAAAGTTGTCTCCAAT 60.163 36.000 0.00 0.00 32.11 3.16
22 23 4.159321 TGCAATGTTCAAAGTTGTCTCCAA 59.841 37.500 0.00 0.00 0.00 3.53
23 24 3.698539 TGCAATGTTCAAAGTTGTCTCCA 59.301 39.130 0.00 0.00 0.00 3.86
24 25 4.305989 TGCAATGTTCAAAGTTGTCTCC 57.694 40.909 0.00 0.00 0.00 3.71
25 26 4.504097 GGTTGCAATGTTCAAAGTTGTCTC 59.496 41.667 0.59 0.00 0.00 3.36
26 27 4.081752 TGGTTGCAATGTTCAAAGTTGTCT 60.082 37.500 0.59 0.00 0.00 3.41
27 28 4.032786 GTGGTTGCAATGTTCAAAGTTGTC 59.967 41.667 0.59 0.00 0.00 3.18
28 29 3.932089 GTGGTTGCAATGTTCAAAGTTGT 59.068 39.130 0.59 0.00 0.00 3.32
29 30 3.931468 TGTGGTTGCAATGTTCAAAGTTG 59.069 39.130 0.59 0.00 0.00 3.16
30 31 4.199432 TGTGGTTGCAATGTTCAAAGTT 57.801 36.364 0.59 0.00 0.00 2.66
31 32 3.883830 TGTGGTTGCAATGTTCAAAGT 57.116 38.095 0.59 0.00 0.00 2.66
32 33 3.000122 CGTTGTGGTTGCAATGTTCAAAG 60.000 43.478 0.59 5.46 32.39 2.77
33 34 2.926200 CGTTGTGGTTGCAATGTTCAAA 59.074 40.909 0.59 0.00 32.39 2.69
34 35 2.164422 TCGTTGTGGTTGCAATGTTCAA 59.836 40.909 0.59 3.95 36.88 2.69
35 36 1.745653 TCGTTGTGGTTGCAATGTTCA 59.254 42.857 0.59 0.00 36.88 3.18
36 37 2.483583 TCGTTGTGGTTGCAATGTTC 57.516 45.000 0.59 0.00 36.88 3.18
37 38 2.949451 TTCGTTGTGGTTGCAATGTT 57.051 40.000 0.59 0.00 36.88 2.71
38 39 2.926838 GTTTTCGTTGTGGTTGCAATGT 59.073 40.909 0.59 0.00 36.88 2.71
39 40 3.186119 AGTTTTCGTTGTGGTTGCAATG 58.814 40.909 0.59 0.00 36.87 2.82
40 41 3.518634 AGTTTTCGTTGTGGTTGCAAT 57.481 38.095 0.59 0.00 0.00 3.56
41 42 3.246619 GAAGTTTTCGTTGTGGTTGCAA 58.753 40.909 0.00 0.00 0.00 4.08
42 43 2.869897 GAAGTTTTCGTTGTGGTTGCA 58.130 42.857 0.00 0.00 0.00 4.08
59 60 1.135373 ACCATACGAGCACTGACGAAG 60.135 52.381 0.00 0.00 0.00 3.79
60 61 0.885879 ACCATACGAGCACTGACGAA 59.114 50.000 0.00 0.00 0.00 3.85
61 62 0.450583 GACCATACGAGCACTGACGA 59.549 55.000 0.00 0.00 0.00 4.20
62 63 0.525668 GGACCATACGAGCACTGACG 60.526 60.000 0.00 0.00 0.00 4.35
63 64 0.179108 GGGACCATACGAGCACTGAC 60.179 60.000 0.00 0.00 0.00 3.51
64 65 0.324368 AGGGACCATACGAGCACTGA 60.324 55.000 0.00 0.00 0.00 3.41
65 66 1.399714 TAGGGACCATACGAGCACTG 58.600 55.000 0.00 0.00 0.00 3.66
66 67 2.158445 AGATAGGGACCATACGAGCACT 60.158 50.000 0.00 0.00 0.00 4.40
67 68 2.240279 AGATAGGGACCATACGAGCAC 58.760 52.381 0.00 0.00 0.00 4.40
68 69 2.677542 AGATAGGGACCATACGAGCA 57.322 50.000 0.00 0.00 0.00 4.26
69 70 2.231721 GGAAGATAGGGACCATACGAGC 59.768 54.545 0.00 0.00 0.00 5.03
70 71 3.508012 CAGGAAGATAGGGACCATACGAG 59.492 52.174 0.00 0.00 0.00 4.18
71 72 3.497332 CAGGAAGATAGGGACCATACGA 58.503 50.000 0.00 0.00 0.00 3.43
72 73 2.563179 CCAGGAAGATAGGGACCATACG 59.437 54.545 0.00 0.00 0.00 3.06
73 74 3.588569 ACCAGGAAGATAGGGACCATAC 58.411 50.000 0.00 0.00 0.00 2.39
74 75 4.295905 AACCAGGAAGATAGGGACCATA 57.704 45.455 0.00 0.00 0.00 2.74
75 76 2.897823 ACCAGGAAGATAGGGACCAT 57.102 50.000 0.00 0.00 0.00 3.55
76 77 2.661176 AACCAGGAAGATAGGGACCA 57.339 50.000 0.00 0.00 0.00 4.02
77 78 5.104067 ACAATAAACCAGGAAGATAGGGACC 60.104 44.000 0.00 0.00 0.00 4.46
78 79 6.002653 ACAATAAACCAGGAAGATAGGGAC 57.997 41.667 0.00 0.00 0.00 4.46
79 80 6.423182 CAACAATAAACCAGGAAGATAGGGA 58.577 40.000 0.00 0.00 0.00 4.20
80 81 5.067805 GCAACAATAAACCAGGAAGATAGGG 59.932 44.000 0.00 0.00 0.00 3.53
81 82 5.652014 TGCAACAATAAACCAGGAAGATAGG 59.348 40.000 0.00 0.00 0.00 2.57
82 83 6.757897 TGCAACAATAAACCAGGAAGATAG 57.242 37.500 0.00 0.00 0.00 2.08
83 84 7.716799 AATGCAACAATAAACCAGGAAGATA 57.283 32.000 0.00 0.00 0.00 1.98
84 85 6.610075 AATGCAACAATAAACCAGGAAGAT 57.390 33.333 0.00 0.00 0.00 2.40
85 86 6.222389 CAAATGCAACAATAAACCAGGAAGA 58.778 36.000 0.00 0.00 0.00 2.87
86 87 5.106987 GCAAATGCAACAATAAACCAGGAAG 60.107 40.000 0.00 0.00 41.59 3.46
87 88 4.754114 GCAAATGCAACAATAAACCAGGAA 59.246 37.500 0.00 0.00 41.59 3.36
88 89 4.314121 GCAAATGCAACAATAAACCAGGA 58.686 39.130 0.00 0.00 41.59 3.86
89 90 4.666928 GCAAATGCAACAATAAACCAGG 57.333 40.909 0.00 0.00 41.59 4.45
110 111 5.295431 TCGGTGAAAAAGAAGCATGTATG 57.705 39.130 0.00 0.00 0.00 2.39
111 112 5.473504 ACTTCGGTGAAAAAGAAGCATGTAT 59.526 36.000 4.56 0.00 43.61 2.29
112 113 4.819630 ACTTCGGTGAAAAAGAAGCATGTA 59.180 37.500 4.56 0.00 43.61 2.29
113 114 3.632145 ACTTCGGTGAAAAAGAAGCATGT 59.368 39.130 4.56 0.00 43.61 3.21
114 115 4.228912 ACTTCGGTGAAAAAGAAGCATG 57.771 40.909 4.56 0.00 43.61 4.06
115 116 4.215613 GGTACTTCGGTGAAAAAGAAGCAT 59.784 41.667 4.56 0.00 43.61 3.79
116 117 3.562557 GGTACTTCGGTGAAAAAGAAGCA 59.437 43.478 4.56 0.00 43.61 3.91
117 118 3.813724 AGGTACTTCGGTGAAAAAGAAGC 59.186 43.478 4.56 0.00 43.61 3.86
133 134 8.525115 ACCCTAAGGCAGAAATCATAAGGTACT 61.525 40.741 0.00 0.00 36.93 2.73
134 135 5.998363 CCCTAAGGCAGAAATCATAAGGTAC 59.002 44.000 0.00 0.00 0.00 3.34
135 136 5.670361 ACCCTAAGGCAGAAATCATAAGGTA 59.330 40.000 0.00 0.00 36.11 3.08
136 137 4.478686 ACCCTAAGGCAGAAATCATAAGGT 59.521 41.667 0.00 0.00 36.11 3.50
137 138 5.053978 ACCCTAAGGCAGAAATCATAAGG 57.946 43.478 0.00 0.00 36.11 2.69
138 139 7.283329 AGTAACCCTAAGGCAGAAATCATAAG 58.717 38.462 0.00 0.00 36.11 1.73
139 140 7.208064 AGTAACCCTAAGGCAGAAATCATAA 57.792 36.000 0.00 0.00 36.11 1.90
140 141 6.824958 AGTAACCCTAAGGCAGAAATCATA 57.175 37.500 0.00 0.00 36.11 2.15
141 142 5.717119 AGTAACCCTAAGGCAGAAATCAT 57.283 39.130 0.00 0.00 36.11 2.45
142 143 5.514500 AAGTAACCCTAAGGCAGAAATCA 57.486 39.130 0.00 0.00 36.11 2.57
143 144 6.651086 ACTAAGTAACCCTAAGGCAGAAATC 58.349 40.000 0.00 0.00 36.11 2.17
144 145 6.638021 ACTAAGTAACCCTAAGGCAGAAAT 57.362 37.500 0.00 0.00 36.11 2.17
145 146 6.043474 TGAACTAAGTAACCCTAAGGCAGAAA 59.957 38.462 0.00 0.00 36.11 2.52
146 147 5.544948 TGAACTAAGTAACCCTAAGGCAGAA 59.455 40.000 0.00 0.00 36.11 3.02
147 148 5.088730 TGAACTAAGTAACCCTAAGGCAGA 58.911 41.667 0.00 0.00 36.11 4.26
148 149 5.416271 TGAACTAAGTAACCCTAAGGCAG 57.584 43.478 0.00 0.00 36.11 4.85
149 150 6.670902 AGTATGAACTAAGTAACCCTAAGGCA 59.329 38.462 0.00 0.00 32.28 4.75
150 151 7.122138 AGTATGAACTAAGTAACCCTAAGGC 57.878 40.000 0.00 0.00 32.28 4.35
155 156 9.430399 TTGCTATAGTATGAACTAAGTAACCCT 57.570 33.333 0.84 0.00 41.49 4.34
161 162 8.684520 ACGACTTTGCTATAGTATGAACTAAGT 58.315 33.333 0.84 2.60 41.49 2.24
162 163 8.959058 CACGACTTTGCTATAGTATGAACTAAG 58.041 37.037 0.84 0.00 41.49 2.18
163 164 8.464404 ACACGACTTTGCTATAGTATGAACTAA 58.536 33.333 0.84 0.00 41.49 2.24
164 165 7.913821 CACACGACTTTGCTATAGTATGAACTA 59.086 37.037 0.84 0.00 42.35 2.24
165 166 6.752351 CACACGACTTTGCTATAGTATGAACT 59.248 38.462 0.84 0.00 39.91 3.01
166 167 6.750501 TCACACGACTTTGCTATAGTATGAAC 59.249 38.462 0.84 0.00 0.00 3.18
167 168 6.859017 TCACACGACTTTGCTATAGTATGAA 58.141 36.000 0.84 0.00 0.00 2.57
168 169 6.445357 TCACACGACTTTGCTATAGTATGA 57.555 37.500 0.84 0.00 0.00 2.15
169 170 6.363626 GGATCACACGACTTTGCTATAGTATG 59.636 42.308 0.84 0.00 0.00 2.39
170 171 6.265649 AGGATCACACGACTTTGCTATAGTAT 59.734 38.462 0.84 0.00 0.00 2.12
171 172 5.593095 AGGATCACACGACTTTGCTATAGTA 59.407 40.000 0.84 0.00 0.00 1.82
172 173 4.402793 AGGATCACACGACTTTGCTATAGT 59.597 41.667 0.84 0.00 0.00 2.12
173 174 4.938080 AGGATCACACGACTTTGCTATAG 58.062 43.478 0.00 0.00 0.00 1.31
174 175 4.401202 TGAGGATCACACGACTTTGCTATA 59.599 41.667 0.00 0.00 42.56 1.31
175 176 3.195610 TGAGGATCACACGACTTTGCTAT 59.804 43.478 0.00 0.00 42.56 2.97
176 177 2.560981 TGAGGATCACACGACTTTGCTA 59.439 45.455 0.00 0.00 42.56 3.49
177 178 1.344438 TGAGGATCACACGACTTTGCT 59.656 47.619 0.00 0.00 42.56 3.91
178 179 1.795768 TGAGGATCACACGACTTTGC 58.204 50.000 0.00 0.00 42.56 3.68
190 191 7.050377 TCAACCTAAACATCTGATTGAGGATC 58.950 38.462 2.06 0.00 35.21 3.36
191 192 6.962182 TCAACCTAAACATCTGATTGAGGAT 58.038 36.000 2.06 0.00 0.00 3.24
192 193 6.373005 TCAACCTAAACATCTGATTGAGGA 57.627 37.500 2.06 0.00 0.00 3.71
193 194 6.825213 TCATCAACCTAAACATCTGATTGAGG 59.175 38.462 0.00 0.00 0.00 3.86
194 195 7.854557 TCATCAACCTAAACATCTGATTGAG 57.145 36.000 0.00 0.00 0.00 3.02
195 196 8.812513 ATTCATCAACCTAAACATCTGATTGA 57.187 30.769 0.00 0.00 0.00 2.57
196 197 7.854422 CGATTCATCAACCTAAACATCTGATTG 59.146 37.037 0.00 0.00 0.00 2.67
197 198 7.467811 GCGATTCATCAACCTAAACATCTGATT 60.468 37.037 0.00 0.00 0.00 2.57
198 199 6.017605 GCGATTCATCAACCTAAACATCTGAT 60.018 38.462 0.00 0.00 0.00 2.90
199 200 5.294306 GCGATTCATCAACCTAAACATCTGA 59.706 40.000 0.00 0.00 0.00 3.27
200 201 5.504665 GGCGATTCATCAACCTAAACATCTG 60.505 44.000 0.00 0.00 0.00 2.90
201 202 4.576463 GGCGATTCATCAACCTAAACATCT 59.424 41.667 0.00 0.00 0.00 2.90
202 203 4.552767 CGGCGATTCATCAACCTAAACATC 60.553 45.833 0.00 0.00 0.00 3.06
203 204 3.312421 CGGCGATTCATCAACCTAAACAT 59.688 43.478 0.00 0.00 0.00 2.71
204 205 2.675844 CGGCGATTCATCAACCTAAACA 59.324 45.455 0.00 0.00 0.00 2.83
205 206 2.933906 TCGGCGATTCATCAACCTAAAC 59.066 45.455 4.99 0.00 0.00 2.01
206 207 3.194861 CTCGGCGATTCATCAACCTAAA 58.805 45.455 11.27 0.00 0.00 1.85
207 208 2.167693 ACTCGGCGATTCATCAACCTAA 59.832 45.455 11.27 0.00 0.00 2.69
208 209 1.754803 ACTCGGCGATTCATCAACCTA 59.245 47.619 11.27 0.00 0.00 3.08
209 210 0.537188 ACTCGGCGATTCATCAACCT 59.463 50.000 11.27 0.00 0.00 3.50
210 211 1.369625 AACTCGGCGATTCATCAACC 58.630 50.000 11.27 0.00 0.00 3.77
211 212 3.471495 AAAACTCGGCGATTCATCAAC 57.529 42.857 11.27 0.00 0.00 3.18
212 213 5.123186 ACAATAAAACTCGGCGATTCATCAA 59.877 36.000 11.27 0.00 0.00 2.57
213 214 4.634004 ACAATAAAACTCGGCGATTCATCA 59.366 37.500 11.27 0.00 0.00 3.07
214 215 5.156804 ACAATAAAACTCGGCGATTCATC 57.843 39.130 11.27 0.00 0.00 2.92
215 216 5.331902 CAACAATAAAACTCGGCGATTCAT 58.668 37.500 11.27 0.00 0.00 2.57
216 217 4.717991 CAACAATAAAACTCGGCGATTCA 58.282 39.130 11.27 0.00 0.00 2.57
217 218 3.542310 GCAACAATAAAACTCGGCGATTC 59.458 43.478 11.27 0.00 0.00 2.52
218 219 3.190535 AGCAACAATAAAACTCGGCGATT 59.809 39.130 11.27 0.37 0.00 3.34
219 220 2.747446 AGCAACAATAAAACTCGGCGAT 59.253 40.909 11.27 0.00 0.00 4.58
220 221 2.147958 AGCAACAATAAAACTCGGCGA 58.852 42.857 10.14 10.14 0.00 5.54
221 222 2.611974 AGCAACAATAAAACTCGGCG 57.388 45.000 0.00 0.00 0.00 6.46
222 223 5.229921 TCATAGCAACAATAAAACTCGGC 57.770 39.130 0.00 0.00 0.00 5.54
223 224 7.250569 ACATTCATAGCAACAATAAAACTCGG 58.749 34.615 0.00 0.00 0.00 4.63
224 225 9.767684 TTACATTCATAGCAACAATAAAACTCG 57.232 29.630 0.00 0.00 0.00 4.18
233 234 9.853555 CCAAATTACTTACATTCATAGCAACAA 57.146 29.630 0.00 0.00 0.00 2.83
234 235 9.237187 TCCAAATTACTTACATTCATAGCAACA 57.763 29.630 0.00 0.00 0.00 3.33
237 238 8.394877 CGTTCCAAATTACTTACATTCATAGCA 58.605 33.333 0.00 0.00 0.00 3.49
238 239 7.855904 CCGTTCCAAATTACTTACATTCATAGC 59.144 37.037 0.00 0.00 0.00 2.97
239 240 9.104965 TCCGTTCCAAATTACTTACATTCATAG 57.895 33.333 0.00 0.00 0.00 2.23
240 241 9.104965 CTCCGTTCCAAATTACTTACATTCATA 57.895 33.333 0.00 0.00 0.00 2.15
241 242 7.067008 CCTCCGTTCCAAATTACTTACATTCAT 59.933 37.037 0.00 0.00 0.00 2.57
242 243 6.373216 CCTCCGTTCCAAATTACTTACATTCA 59.627 38.462 0.00 0.00 0.00 2.57
243 244 6.183360 CCCTCCGTTCCAAATTACTTACATTC 60.183 42.308 0.00 0.00 0.00 2.67
244 245 5.650703 CCCTCCGTTCCAAATTACTTACATT 59.349 40.000 0.00 0.00 0.00 2.71
245 246 5.045432 TCCCTCCGTTCCAAATTACTTACAT 60.045 40.000 0.00 0.00 0.00 2.29
246 247 4.286549 TCCCTCCGTTCCAAATTACTTACA 59.713 41.667 0.00 0.00 0.00 2.41
247 248 4.835678 TCCCTCCGTTCCAAATTACTTAC 58.164 43.478 0.00 0.00 0.00 2.34
248 249 4.533311 ACTCCCTCCGTTCCAAATTACTTA 59.467 41.667 0.00 0.00 0.00 2.24
249 250 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
250 251 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
251 252 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
252 253 5.703730 ATTACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
253 254 4.586306 ATTACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
254 255 4.270008 CAATTACTCCCTCCGTTCCAAAT 58.730 43.478 0.00 0.00 0.00 2.32
255 256 3.560453 CCAATTACTCCCTCCGTTCCAAA 60.560 47.826 0.00 0.00 0.00 3.28
256 257 2.026636 CCAATTACTCCCTCCGTTCCAA 60.027 50.000 0.00 0.00 0.00 3.53
257 258 1.557832 CCAATTACTCCCTCCGTTCCA 59.442 52.381 0.00 0.00 0.00 3.53
258 259 1.558294 ACCAATTACTCCCTCCGTTCC 59.442 52.381 0.00 0.00 0.00 3.62
259 260 2.235402 TCACCAATTACTCCCTCCGTTC 59.765 50.000 0.00 0.00 0.00 3.95
260 261 2.262637 TCACCAATTACTCCCTCCGTT 58.737 47.619 0.00 0.00 0.00 4.44
261 262 1.946984 TCACCAATTACTCCCTCCGT 58.053 50.000 0.00 0.00 0.00 4.69
262 263 3.206150 CATTCACCAATTACTCCCTCCG 58.794 50.000 0.00 0.00 0.00 4.63
263 264 4.236527 ACATTCACCAATTACTCCCTCC 57.763 45.455 0.00 0.00 0.00 4.30
264 265 5.823045 CCTTACATTCACCAATTACTCCCTC 59.177 44.000 0.00 0.00 0.00 4.30
265 266 5.491078 TCCTTACATTCACCAATTACTCCCT 59.509 40.000 0.00 0.00 0.00 4.20
266 267 5.589050 GTCCTTACATTCACCAATTACTCCC 59.411 44.000 0.00 0.00 0.00 4.30
267 268 5.293569 CGTCCTTACATTCACCAATTACTCC 59.706 44.000 0.00 0.00 0.00 3.85
268 269 5.220605 GCGTCCTTACATTCACCAATTACTC 60.221 44.000 0.00 0.00 0.00 2.59
269 270 4.634443 GCGTCCTTACATTCACCAATTACT 59.366 41.667 0.00 0.00 0.00 2.24
270 271 4.493545 CGCGTCCTTACATTCACCAATTAC 60.494 45.833 0.00 0.00 0.00 1.89
271 272 3.619483 CGCGTCCTTACATTCACCAATTA 59.381 43.478 0.00 0.00 0.00 1.40
272 273 2.418628 CGCGTCCTTACATTCACCAATT 59.581 45.455 0.00 0.00 0.00 2.32
273 274 2.006888 CGCGTCCTTACATTCACCAAT 58.993 47.619 0.00 0.00 0.00 3.16
274 275 1.001068 TCGCGTCCTTACATTCACCAA 59.999 47.619 5.77 0.00 0.00 3.67
275 276 0.604073 TCGCGTCCTTACATTCACCA 59.396 50.000 5.77 0.00 0.00 4.17
276 277 1.392510 GTTCGCGTCCTTACATTCACC 59.607 52.381 5.77 0.00 0.00 4.02
277 278 2.334838 AGTTCGCGTCCTTACATTCAC 58.665 47.619 5.77 0.00 0.00 3.18
278 279 2.736144 AGTTCGCGTCCTTACATTCA 57.264 45.000 5.77 0.00 0.00 2.57
279 280 4.025979 CCATAAGTTCGCGTCCTTACATTC 60.026 45.833 17.83 0.00 0.00 2.67
280 281 3.869246 CCATAAGTTCGCGTCCTTACATT 59.131 43.478 17.83 4.97 0.00 2.71
281 282 3.454375 CCATAAGTTCGCGTCCTTACAT 58.546 45.455 17.83 6.29 0.00 2.29
282 283 2.883574 CCATAAGTTCGCGTCCTTACA 58.116 47.619 17.83 4.56 0.00 2.41
283 284 1.591619 GCCATAAGTTCGCGTCCTTAC 59.408 52.381 17.83 6.28 0.00 2.34
284 285 1.479323 AGCCATAAGTTCGCGTCCTTA 59.521 47.619 17.79 17.79 0.00 2.69
285 286 0.249398 AGCCATAAGTTCGCGTCCTT 59.751 50.000 5.77 11.92 0.00 3.36
286 287 0.179108 GAGCCATAAGTTCGCGTCCT 60.179 55.000 5.77 0.00 0.00 3.85
287 288 0.179108 AGAGCCATAAGTTCGCGTCC 60.179 55.000 5.77 0.00 0.00 4.79
288 289 1.201343 GAGAGCCATAAGTTCGCGTC 58.799 55.000 5.77 0.31 0.00 5.19
289 290 0.525668 CGAGAGCCATAAGTTCGCGT 60.526 55.000 5.77 0.00 42.48 6.01
290 291 1.209275 CCGAGAGCCATAAGTTCGCG 61.209 60.000 0.00 0.00 45.95 5.87
291 292 0.876342 CCCGAGAGCCATAAGTTCGC 60.876 60.000 0.00 0.00 0.00 4.70
292 293 0.460311 ACCCGAGAGCCATAAGTTCG 59.540 55.000 0.00 0.00 0.00 3.95
293 294 2.223994 GGTACCCGAGAGCCATAAGTTC 60.224 54.545 0.00 0.00 0.00 3.01
294 295 1.761198 GGTACCCGAGAGCCATAAGTT 59.239 52.381 0.00 0.00 0.00 2.66
295 296 1.411041 GGTACCCGAGAGCCATAAGT 58.589 55.000 0.00 0.00 0.00 2.24
310 311 0.389426 CATATAGGGTGCGCGGGTAC 60.389 60.000 12.29 12.29 0.00 3.34
311 312 1.969085 CATATAGGGTGCGCGGGTA 59.031 57.895 8.83 0.00 0.00 3.69
312 313 2.741092 CATATAGGGTGCGCGGGT 59.259 61.111 8.83 0.00 0.00 5.28
313 314 2.742372 GCATATAGGGTGCGCGGG 60.742 66.667 8.83 0.00 32.29 6.13
381 382 7.933577 GTAGAATACCTGATCATGTTTGATCCA 59.066 37.037 9.01 0.00 45.15 3.41
382 383 8.316640 GTAGAATACCTGATCATGTTTGATCC 57.683 38.462 9.01 0.00 45.15 3.36
384 385 7.869937 CGAGTAGAATACCTGATCATGTTTGAT 59.130 37.037 9.01 0.00 44.47 2.57
385 386 7.147897 ACGAGTAGAATACCTGATCATGTTTGA 60.148 37.037 9.01 0.00 44.47 2.69
386 387 6.980978 ACGAGTAGAATACCTGATCATGTTTG 59.019 38.462 9.01 0.00 44.47 2.93
387 388 7.068839 AGACGAGTAGAATACCTGATCATGTTT 59.931 37.037 9.01 0.00 44.47 2.83
388 389 6.547880 AGACGAGTAGAATACCTGATCATGTT 59.452 38.462 9.01 0.00 44.47 2.71
389 390 6.065374 AGACGAGTAGAATACCTGATCATGT 58.935 40.000 8.74 8.74 44.47 3.21
390 391 6.567687 AGACGAGTAGAATACCTGATCATG 57.432 41.667 0.00 0.00 44.47 3.07
391 392 8.693120 TTTAGACGAGTAGAATACCTGATCAT 57.307 34.615 0.00 0.00 44.47 2.45
392 393 8.515695 TTTTAGACGAGTAGAATACCTGATCA 57.484 34.615 0.00 0.00 44.47 2.92
393 394 9.453325 CTTTTTAGACGAGTAGAATACCTGATC 57.547 37.037 0.00 0.00 44.47 2.92
394 395 8.968969 ACTTTTTAGACGAGTAGAATACCTGAT 58.031 33.333 0.00 0.00 44.47 2.90
395 396 8.345724 ACTTTTTAGACGAGTAGAATACCTGA 57.654 34.615 0.00 0.00 44.47 3.86
396 397 8.983307 AACTTTTTAGACGAGTAGAATACCTG 57.017 34.615 0.00 0.00 44.47 4.00
397 398 9.420551 CAAACTTTTTAGACGAGTAGAATACCT 57.579 33.333 0.00 0.00 44.47 3.08
398 399 8.654215 CCAAACTTTTTAGACGAGTAGAATACC 58.346 37.037 0.00 0.00 44.47 2.73
399 400 9.415544 TCCAAACTTTTTAGACGAGTAGAATAC 57.584 33.333 0.00 0.00 43.47 1.89
400 401 9.415544 GTCCAAACTTTTTAGACGAGTAGAATA 57.584 33.333 0.00 0.00 0.00 1.75
401 402 7.929785 TGTCCAAACTTTTTAGACGAGTAGAAT 59.070 33.333 0.00 0.00 0.00 2.40
402 403 7.267128 TGTCCAAACTTTTTAGACGAGTAGAA 58.733 34.615 0.00 0.00 0.00 2.10
403 404 6.808829 TGTCCAAACTTTTTAGACGAGTAGA 58.191 36.000 0.00 0.00 0.00 2.59
404 405 7.437267 TCTTGTCCAAACTTTTTAGACGAGTAG 59.563 37.037 11.74 1.13 39.17 2.57
405 406 7.267128 TCTTGTCCAAACTTTTTAGACGAGTA 58.733 34.615 11.74 1.28 39.17 2.59
406 407 6.110707 TCTTGTCCAAACTTTTTAGACGAGT 58.889 36.000 11.74 0.00 39.17 4.18
407 408 6.598753 TCTTGTCCAAACTTTTTAGACGAG 57.401 37.500 7.70 7.70 39.38 4.18
408 409 6.988622 TTCTTGTCCAAACTTTTTAGACGA 57.011 33.333 0.00 0.00 0.00 4.20
409 410 7.913297 TCATTTCTTGTCCAAACTTTTTAGACG 59.087 33.333 0.00 0.00 0.00 4.18
410 411 9.750125 ATCATTTCTTGTCCAAACTTTTTAGAC 57.250 29.630 0.00 0.00 0.00 2.59
414 415 9.617523 ATGAATCATTTCTTGTCCAAACTTTTT 57.382 25.926 0.00 0.00 32.78 1.94
418 419 9.865321 CAATATGAATCATTTCTTGTCCAAACT 57.135 29.630 0.00 0.00 32.78 2.66
419 420 9.859427 TCAATATGAATCATTTCTTGTCCAAAC 57.141 29.630 0.00 0.00 32.78 2.93
420 421 9.859427 GTCAATATGAATCATTTCTTGTCCAAA 57.141 29.630 0.00 0.00 32.78 3.28
421 422 9.246670 AGTCAATATGAATCATTTCTTGTCCAA 57.753 29.630 0.00 0.00 32.78 3.53
422 423 8.812513 AGTCAATATGAATCATTTCTTGTCCA 57.187 30.769 0.00 0.00 32.78 4.02
423 424 9.727627 GAAGTCAATATGAATCATTTCTTGTCC 57.272 33.333 0.00 0.78 32.78 4.02
426 427 9.218359 CGTGAAGTCAATATGAATCATTTCTTG 57.782 33.333 0.00 4.09 30.53 3.02
427 428 8.400947 CCGTGAAGTCAATATGAATCATTTCTT 58.599 33.333 0.00 0.18 30.53 2.52
428 429 7.467811 GCCGTGAAGTCAATATGAATCATTTCT 60.468 37.037 0.00 0.00 30.53 2.52
429 430 6.634436 GCCGTGAAGTCAATATGAATCATTTC 59.366 38.462 0.00 0.00 30.53 2.17
430 431 6.095300 TGCCGTGAAGTCAATATGAATCATTT 59.905 34.615 0.00 0.00 30.53 2.32
431 432 5.589855 TGCCGTGAAGTCAATATGAATCATT 59.410 36.000 0.00 0.00 30.53 2.57
432 433 5.125356 TGCCGTGAAGTCAATATGAATCAT 58.875 37.500 0.00 0.00 30.53 2.45
433 434 4.512484 TGCCGTGAAGTCAATATGAATCA 58.488 39.130 0.00 0.00 0.00 2.57
434 435 5.484173 TTGCCGTGAAGTCAATATGAATC 57.516 39.130 0.00 0.00 0.00 2.52
435 436 5.895636 TTTGCCGTGAAGTCAATATGAAT 57.104 34.783 0.00 0.00 0.00 2.57
436 437 5.697473 TTTTGCCGTGAAGTCAATATGAA 57.303 34.783 0.00 0.00 0.00 2.57
437 438 5.697473 TTTTTGCCGTGAAGTCAATATGA 57.303 34.783 0.00 0.00 0.00 2.15
460 461 8.804743 CGTTATATTGTCGTCATAAACTTGTCT 58.195 33.333 0.00 0.00 0.00 3.41
461 462 8.589629 ACGTTATATTGTCGTCATAAACTTGTC 58.410 33.333 0.00 0.00 32.26 3.18
462 463 8.377681 CACGTTATATTGTCGTCATAAACTTGT 58.622 33.333 0.00 0.00 35.62 3.16
463 464 8.377681 ACACGTTATATTGTCGTCATAAACTTG 58.622 33.333 0.00 0.00 35.62 3.16
464 465 8.470040 ACACGTTATATTGTCGTCATAAACTT 57.530 30.769 0.00 0.00 35.62 2.66
465 466 9.740239 ATACACGTTATATTGTCGTCATAAACT 57.260 29.630 0.00 0.00 35.62 2.66
470 471 9.817365 GTACTATACACGTTATATTGTCGTCAT 57.183 33.333 6.86 0.00 35.62 3.06
471 472 9.045223 AGTACTATACACGTTATATTGTCGTCA 57.955 33.333 0.00 0.00 35.62 4.35
472 473 9.869844 AAGTACTATACACGTTATATTGTCGTC 57.130 33.333 0.00 2.29 35.62 4.20
473 474 9.655769 CAAGTACTATACACGTTATATTGTCGT 57.344 33.333 0.00 0.00 38.34 4.34
474 475 9.655769 ACAAGTACTATACACGTTATATTGTCG 57.344 33.333 0.00 0.00 0.00 4.35
482 483 9.288576 AGCCATATACAAGTACTATACACGTTA 57.711 33.333 0.00 0.00 0.00 3.18
483 484 8.174733 AGCCATATACAAGTACTATACACGTT 57.825 34.615 0.00 0.00 0.00 3.99
484 485 7.756395 AGCCATATACAAGTACTATACACGT 57.244 36.000 0.00 0.00 0.00 4.49
485 486 9.472361 AAAAGCCATATACAAGTACTATACACG 57.528 33.333 0.00 0.00 0.00 4.49
518 519 3.117491 TGCATCCTGGATCGAAGATTC 57.883 47.619 6.13 0.00 45.12 2.52
519 520 3.209410 GTTGCATCCTGGATCGAAGATT 58.791 45.455 6.13 0.00 45.12 2.40
520 521 2.804572 CGTTGCATCCTGGATCGAAGAT 60.805 50.000 6.13 0.00 45.12 2.40
521 522 1.471501 CGTTGCATCCTGGATCGAAGA 60.472 52.381 6.13 0.00 45.75 2.87
522 523 0.933097 CGTTGCATCCTGGATCGAAG 59.067 55.000 6.13 0.00 33.65 3.79
523 524 0.534873 TCGTTGCATCCTGGATCGAA 59.465 50.000 13.76 4.67 37.07 3.71
524 525 0.534873 TTCGTTGCATCCTGGATCGA 59.465 50.000 6.13 10.03 37.96 3.59
525 526 1.328680 CTTTCGTTGCATCCTGGATCG 59.671 52.381 6.13 7.68 33.21 3.69
526 527 2.352960 GACTTTCGTTGCATCCTGGATC 59.647 50.000 6.13 2.88 0.00 3.36
527 528 2.290260 TGACTTTCGTTGCATCCTGGAT 60.290 45.455 2.57 2.57 0.00 3.41
528 529 1.071542 TGACTTTCGTTGCATCCTGGA 59.928 47.619 0.00 0.00 0.00 3.86
529 530 1.522668 TGACTTTCGTTGCATCCTGG 58.477 50.000 0.00 0.00 0.00 4.45
530 531 3.438087 AGAATGACTTTCGTTGCATCCTG 59.562 43.478 0.00 0.00 39.46 3.86
531 532 3.679389 AGAATGACTTTCGTTGCATCCT 58.321 40.909 0.00 0.00 39.46 3.24
532 533 3.686726 AGAGAATGACTTTCGTTGCATCC 59.313 43.478 0.00 0.00 39.46 3.51
533 534 4.389992 TCAGAGAATGACTTTCGTTGCATC 59.610 41.667 0.00 0.00 39.46 3.91
534 535 4.318332 TCAGAGAATGACTTTCGTTGCAT 58.682 39.130 0.00 0.00 39.46 3.96
535 536 3.727726 TCAGAGAATGACTTTCGTTGCA 58.272 40.909 0.00 0.00 39.46 4.08
536 537 4.389992 TCATCAGAGAATGACTTTCGTTGC 59.610 41.667 0.00 0.00 41.91 4.17
537 538 6.471976 TTCATCAGAGAATGACTTTCGTTG 57.528 37.500 0.00 0.20 41.91 4.10
538 539 7.102346 AGATTCATCAGAGAATGACTTTCGTT 58.898 34.615 0.00 0.00 41.91 3.85
539 540 6.638610 AGATTCATCAGAGAATGACTTTCGT 58.361 36.000 0.00 0.00 41.91 3.85
540 541 7.536895 AAGATTCATCAGAGAATGACTTTCG 57.463 36.000 0.00 0.00 41.91 3.46
651 652 0.320374 TACCAGCGCACCCTATATGC 59.680 55.000 11.47 0.00 39.81 3.14
652 653 2.418746 GGATACCAGCGCACCCTATATG 60.419 54.545 11.47 0.00 0.00 1.78
653 654 1.831736 GGATACCAGCGCACCCTATAT 59.168 52.381 11.47 0.00 0.00 0.86
654 655 1.263356 GGATACCAGCGCACCCTATA 58.737 55.000 11.47 0.00 0.00 1.31
655 656 0.762842 TGGATACCAGCGCACCCTAT 60.763 55.000 11.47 0.00 0.00 2.57
656 657 1.382009 TGGATACCAGCGCACCCTA 60.382 57.895 11.47 0.00 0.00 3.53
657 658 2.687200 TGGATACCAGCGCACCCT 60.687 61.111 11.47 0.00 0.00 4.34
658 659 2.203070 CTGGATACCAGCGCACCC 60.203 66.667 11.47 1.24 45.13 4.61
666 667 4.946160 ATGAAGGAAAACCTGGATACCA 57.054 40.909 0.00 0.00 0.00 3.25
667 668 7.898014 AAATATGAAGGAAAACCTGGATACC 57.102 36.000 0.00 0.00 0.00 2.73
668 669 8.414003 GGAAAATATGAAGGAAAACCTGGATAC 58.586 37.037 0.00 0.00 0.00 2.24
669 670 7.284489 CGGAAAATATGAAGGAAAACCTGGATA 59.716 37.037 0.00 0.00 0.00 2.59
670 671 6.096846 CGGAAAATATGAAGGAAAACCTGGAT 59.903 38.462 0.00 0.00 0.00 3.41
671 672 5.417580 CGGAAAATATGAAGGAAAACCTGGA 59.582 40.000 0.00 0.00 0.00 3.86
672 673 5.185056 ACGGAAAATATGAAGGAAAACCTGG 59.815 40.000 0.00 0.00 0.00 4.45
673 674 6.072175 TCACGGAAAATATGAAGGAAAACCTG 60.072 38.462 0.00 0.00 0.00 4.00
674 675 6.007703 TCACGGAAAATATGAAGGAAAACCT 58.992 36.000 0.00 0.00 0.00 3.50
675 676 6.262193 TCACGGAAAATATGAAGGAAAACC 57.738 37.500 0.00 0.00 0.00 3.27
676 677 7.812669 ACATTCACGGAAAATATGAAGGAAAAC 59.187 33.333 5.02 0.00 36.49 2.43
677 678 7.891561 ACATTCACGGAAAATATGAAGGAAAA 58.108 30.769 5.02 0.00 36.49 2.29
678 679 7.461182 ACATTCACGGAAAATATGAAGGAAA 57.539 32.000 5.02 0.00 36.49 3.13
679 680 8.568676 TTACATTCACGGAAAATATGAAGGAA 57.431 30.769 5.02 0.00 36.49 3.36
680 681 7.827236 ACTTACATTCACGGAAAATATGAAGGA 59.173 33.333 5.02 0.00 36.49 3.36
681 682 7.985476 ACTTACATTCACGGAAAATATGAAGG 58.015 34.615 0.00 0.00 39.42 3.46
690 691 9.562583 GCAAAATAATACTTACATTCACGGAAA 57.437 29.630 0.00 0.00 0.00 3.13
691 692 8.952278 AGCAAAATAATACTTACATTCACGGAA 58.048 29.630 0.00 0.00 0.00 4.30
692 693 8.500753 AGCAAAATAATACTTACATTCACGGA 57.499 30.769 0.00 0.00 0.00 4.69
693 694 9.646336 GTAGCAAAATAATACTTACATTCACGG 57.354 33.333 0.00 0.00 0.00 4.94
777 778 9.308318 GGACAAAACTGAACTTAATGCTTTTAA 57.692 29.630 0.00 0.00 0.00 1.52
778 779 8.470805 TGGACAAAACTGAACTTAATGCTTTTA 58.529 29.630 0.00 0.00 0.00 1.52
779 780 7.327214 TGGACAAAACTGAACTTAATGCTTTT 58.673 30.769 0.00 0.00 0.00 2.27
780 781 6.872920 TGGACAAAACTGAACTTAATGCTTT 58.127 32.000 0.00 0.00 0.00 3.51
781 782 6.463995 TGGACAAAACTGAACTTAATGCTT 57.536 33.333 0.00 0.00 0.00 3.91
782 783 6.655078 ATGGACAAAACTGAACTTAATGCT 57.345 33.333 0.00 0.00 0.00 3.79
783 784 7.367285 TGTATGGACAAAACTGAACTTAATGC 58.633 34.615 0.00 0.00 30.68 3.56
784 785 9.912634 AATGTATGGACAAAACTGAACTTAATG 57.087 29.630 0.00 0.00 39.59 1.90
786 787 9.126151 TGAATGTATGGACAAAACTGAACTTAA 57.874 29.630 0.00 0.00 39.59 1.85
787 788 8.564574 GTGAATGTATGGACAAAACTGAACTTA 58.435 33.333 0.00 0.00 39.59 2.24
800 801 5.705609 ACAAACAAGGTGAATGTATGGAC 57.294 39.130 0.00 0.00 0.00 4.02
825 826 1.597578 GGACCCGCCGTACACAAAA 60.598 57.895 0.00 0.00 0.00 2.44
881 882 1.068194 GCTCTGCATACTAGTAGCCCG 60.068 57.143 8.85 6.58 0.00 6.13
910 911 1.685180 CGACTCTGGGTATGGACTGGA 60.685 57.143 0.00 0.00 0.00 3.86
933 939 1.407989 CCCAGCTGGATGGAAGAAGAC 60.408 57.143 34.91 0.00 43.57 3.01
937 943 3.001514 GCCCAGCTGGATGGAAGA 58.998 61.111 34.91 0.00 43.57 2.87
938 944 2.515523 CGCCCAGCTGGATGGAAG 60.516 66.667 34.91 17.00 43.57 3.46
939 945 3.008517 TCGCCCAGCTGGATGGAA 61.009 61.111 34.91 11.53 43.57 3.53
940 946 3.473647 CTCGCCCAGCTGGATGGA 61.474 66.667 34.91 23.93 43.57 3.41
941 947 3.473647 TCTCGCCCAGCTGGATGG 61.474 66.667 34.91 21.14 40.29 3.51
942 948 2.202987 GTCTCGCCCAGCTGGATG 60.203 66.667 34.91 24.26 37.39 3.51
943 949 3.842923 CGTCTCGCCCAGCTGGAT 61.843 66.667 34.91 0.00 37.39 3.41
959 972 2.188849 ATCGGATCGGATCTCGTGCG 62.189 60.000 16.96 11.61 43.73 5.34
1216 1229 1.052694 ATAACAGGCGGGTAGGGGAC 61.053 60.000 0.00 0.00 0.00 4.46
1217 1230 0.761702 GATAACAGGCGGGTAGGGGA 60.762 60.000 0.00 0.00 0.00 4.81
1218 1231 1.752833 GATAACAGGCGGGTAGGGG 59.247 63.158 0.00 0.00 0.00 4.79
1226 1239 1.887707 GAAGCGGGGATAACAGGCG 60.888 63.158 0.00 0.00 0.00 5.52
1232 1245 0.031515 TGAGGAGGAAGCGGGGATAA 60.032 55.000 0.00 0.00 0.00 1.75
1238 1251 1.153745 CGAAGTGAGGAGGAAGCGG 60.154 63.158 0.00 0.00 0.00 5.52
1239 1252 1.807573 GCGAAGTGAGGAGGAAGCG 60.808 63.158 0.00 0.00 0.00 4.68
1240 1253 1.807573 CGCGAAGTGAGGAGGAAGC 60.808 63.158 0.00 0.00 43.07 3.86
1325 1343 1.129058 AATTAACCGAGCCGATCCCT 58.871 50.000 0.00 0.00 0.00 4.20
1367 1385 1.268265 GAATTTCACCGCCGAATTGC 58.732 50.000 0.00 0.00 0.00 3.56
1389 1408 1.890894 CAGGATCCACGAGACGGTT 59.109 57.895 15.82 0.00 0.00 4.44
1393 1412 0.671251 CTAGGCAGGATCCACGAGAC 59.329 60.000 15.82 2.66 0.00 3.36
1408 1427 8.685838 AAACTCTAGATCTAGCAGTTACTAGG 57.314 38.462 28.59 8.59 40.13 3.02
1547 1566 3.565902 AGCTCTTGTAAAAGCTCACCAAC 59.434 43.478 0.00 0.00 45.57 3.77
1599 1618 5.968528 AAACCCAGCGTTATTATTGACAA 57.031 34.783 0.00 0.00 33.05 3.18
1768 1793 7.337436 ACTCCTACTACTAGTTCTAAACAGCAG 59.663 40.741 0.00 0.00 0.00 4.24
1783 1808 5.244178 GTGCTTGGCATATACTCCTACTACT 59.756 44.000 0.00 0.00 41.91 2.57
1784 1809 5.244178 AGTGCTTGGCATATACTCCTACTAC 59.756 44.000 0.00 0.00 41.91 2.73
1785 1810 5.394738 AGTGCTTGGCATATACTCCTACTA 58.605 41.667 0.00 0.00 41.91 1.82
1786 1811 4.227197 AGTGCTTGGCATATACTCCTACT 58.773 43.478 0.00 0.00 41.91 2.57
1787 1812 4.608948 AGTGCTTGGCATATACTCCTAC 57.391 45.455 0.00 0.00 41.91 3.18
1788 1813 5.630415 AAAGTGCTTGGCATATACTCCTA 57.370 39.130 0.00 0.00 41.91 2.94
1789 1814 4.510167 AAAGTGCTTGGCATATACTCCT 57.490 40.909 0.00 0.00 41.91 3.69
1790 1815 4.036852 GGAAAAGTGCTTGGCATATACTCC 59.963 45.833 0.00 0.00 41.91 3.85
1791 1816 4.640201 TGGAAAAGTGCTTGGCATATACTC 59.360 41.667 0.00 0.00 41.91 2.59
1820 1847 6.153680 ACACCATTCAACAAACTAGAACCAAA 59.846 34.615 0.00 0.00 0.00 3.28
1831 1858 7.282332 TGAACATGATACACCATTCAACAAA 57.718 32.000 0.00 0.00 0.00 2.83
1837 1864 7.765307 ACTTTGATGAACATGATACACCATTC 58.235 34.615 0.00 0.00 0.00 2.67
1838 1865 7.148018 GGACTTTGATGAACATGATACACCATT 60.148 37.037 0.00 0.00 0.00 3.16
1842 1870 6.992063 AGGACTTTGATGAACATGATACAC 57.008 37.500 0.00 0.00 0.00 2.90
1845 1873 9.739276 AGTTTTAGGACTTTGATGAACATGATA 57.261 29.630 0.00 0.00 0.00 2.15
1853 1881 7.741785 TCTGGTAAGTTTTAGGACTTTGATGA 58.258 34.615 0.00 0.00 40.24 2.92
1856 1884 6.940298 CCATCTGGTAAGTTTTAGGACTTTGA 59.060 38.462 0.00 0.00 40.24 2.69
1857 1885 6.151144 CCCATCTGGTAAGTTTTAGGACTTTG 59.849 42.308 0.00 0.00 40.24 2.77
1915 1949 6.016024 TGCACTTTGAAGAGCAAACAAGATAT 60.016 34.615 12.37 0.00 46.87 1.63
1930 1964 4.280425 TGCAAATAGGATGTGCACTTTGAA 59.720 37.500 23.47 14.71 43.09 2.69
1961 1995 7.041107 TGAACAGGAAAAAGGAATCAAACTTG 58.959 34.615 0.00 0.00 0.00 3.16
1999 2033 7.722728 ACTCACTGGCAATCATATGATACAAAT 59.277 33.333 18.47 0.00 33.73 2.32
2015 2049 5.372343 AAATACATGGATACTCACTGGCA 57.628 39.130 0.00 0.00 37.61 4.92
2112 2152 5.009410 AGAGACAAGTTCAAATGCTTCCTTG 59.991 40.000 0.00 0.00 36.32 3.61
2148 2188 4.499865 GGTTCAAGCCTTTCCAAAGTCTTC 60.500 45.833 0.00 0.00 32.44 2.87
2200 2240 2.147150 GGAGTCACCAAAAGCAGAGAC 58.853 52.381 0.00 0.00 38.79 3.36
2304 2344 0.518355 CCAATACAAACGCGTGCGAG 60.518 55.000 22.32 12.25 42.83 5.03
2358 2398 2.602878 ACACGGTACTTGATAACAGCG 58.397 47.619 0.00 0.00 37.85 5.18
2459 2499 4.768448 TGGTGAATGAATGAGCAATCAAGT 59.232 37.500 0.00 0.00 30.18 3.16
2464 2504 4.084287 ACACTGGTGAATGAATGAGCAAT 58.916 39.130 7.78 0.00 0.00 3.56
2497 2554 6.086222 ACAGTGCAAAATTATCAGTTTAGCG 58.914 36.000 0.00 0.00 0.00 4.26
2516 2573 1.751924 GAGTAGGCCTCCTGTACAGTG 59.248 57.143 21.18 12.69 34.61 3.66
2519 2576 2.176889 GTTGAGTAGGCCTCCTGTACA 58.823 52.381 9.68 0.00 39.65 2.90
2520 2577 2.427812 GAGTTGAGTAGGCCTCCTGTAC 59.572 54.545 9.68 0.00 39.65 2.90
2522 2579 1.562783 GAGTTGAGTAGGCCTCCTGT 58.437 55.000 9.68 0.00 39.65 4.00
2523 2580 0.827368 GGAGTTGAGTAGGCCTCCTG 59.173 60.000 9.68 0.00 40.30 3.86
2687 2745 4.286808 TGACAGTGAATCCAGATTTCCAGA 59.713 41.667 0.00 0.00 0.00 3.86
2707 2767 4.278419 ACCTTAGCCTGAACAACAAATGAC 59.722 41.667 0.00 0.00 0.00 3.06
2903 2963 0.473755 TCTTGCCAGACTTTGAGCCA 59.526 50.000 0.00 0.00 0.00 4.75
3170 3271 0.919710 ACCAGGGGCTAAGATTGGAC 59.080 55.000 0.00 0.00 33.19 4.02
3261 3367 1.518133 CGTGCTCTACTGGCTCAGC 60.518 63.158 0.00 0.00 34.37 4.26
3302 3408 1.827789 GCTGTTTGGCACACCCAGA 60.828 57.895 0.64 0.00 46.39 3.86
3311 3417 2.540931 CACAATGTTCTTGCTGTTTGGC 59.459 45.455 0.00 0.00 0.00 4.52
3390 3504 6.676237 AGGACGTTTGCAAATTTGAAAATT 57.324 29.167 23.93 15.54 37.96 1.82
3397 3511 4.314740 TTGCTAGGACGTTTGCAAATTT 57.685 36.364 16.21 5.11 41.58 1.82
3435 3549 9.826574 GTCATAACATTATTGTACAGGTCCTTA 57.173 33.333 0.00 0.00 34.06 2.69
3457 3571 5.895636 TCACTTGTTCAAACACTTGTCAT 57.104 34.783 0.00 0.00 38.92 3.06
3469 3583 4.512484 TCAGTGTCAACATCACTTGTTCA 58.488 39.130 0.00 0.00 45.55 3.18
3483 3598 1.627864 TCGGGAAGTCATCAGTGTCA 58.372 50.000 0.00 0.00 0.00 3.58
3561 3677 6.409695 CCTTGTATATCCCTTGTGACCTCATT 60.410 42.308 0.00 0.00 0.00 2.57
3593 3709 2.419673 CGCAAAGAGCATACACCATGAA 59.580 45.455 0.00 0.00 46.13 2.57
3594 3710 2.009051 CGCAAAGAGCATACACCATGA 58.991 47.619 0.00 0.00 46.13 3.07
3687 3803 3.451402 AAGCCTAAACCCTTCCGATTT 57.549 42.857 0.00 0.00 0.00 2.17
3818 3934 1.601419 CCTGCAGCATTGACCCCAAG 61.601 60.000 8.66 0.00 35.48 3.61
3881 3997 1.678970 GCACCACTTCATCCACCCC 60.679 63.158 0.00 0.00 0.00 4.95
3884 4000 0.883833 CTTGGCACCACTTCATCCAC 59.116 55.000 0.00 0.00 0.00 4.02
3991 4107 3.923864 TCGGCCAACACTCAGCGT 61.924 61.111 2.24 0.00 0.00 5.07
4044 4160 6.592994 CACATCCATCTCAATATACGCATCTT 59.407 38.462 0.00 0.00 0.00 2.40
4055 4171 1.285667 TGGCCACACATCCATCTCAAT 59.714 47.619 0.00 0.00 0.00 2.57
4110 4226 2.365941 GTGCTACCCCAACTCTATCTCC 59.634 54.545 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.