Multiple sequence alignment - TraesCS3B01G097000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G097000 chr3B 100.000 7151 0 0 1 7151 64707132 64699982 0.000000e+00 13206.0
1 TraesCS3B01G097000 chr3B 91.852 135 9 2 6620 6753 426998990 426998857 3.410000e-43 187.0
2 TraesCS3B01G097000 chr3D 94.108 5397 247 31 1208 6575 41676037 41670683 0.000000e+00 8139.0
3 TraesCS3B01G097000 chr3D 83.605 799 87 27 441 1212 41676866 41676085 0.000000e+00 710.0
4 TraesCS3B01G097000 chr3D 90.441 272 21 3 6884 7151 41670522 41670252 3.170000e-93 353.0
5 TraesCS3B01G097000 chr3D 94.915 118 6 0 6636 6753 337959626 337959509 1.230000e-42 185.0
6 TraesCS3B01G097000 chr3D 93.443 122 7 1 6634 6754 607000534 607000655 5.700000e-41 180.0
7 TraesCS3B01G097000 chr3D 85.882 85 12 0 113 197 511537284 511537200 2.750000e-14 91.6
8 TraesCS3B01G097000 chr3D 95.918 49 2 0 66 114 41676914 41676866 5.950000e-11 80.5
9 TraesCS3B01G097000 chr3A 94.743 4204 177 22 2441 6639 53186148 53181984 0.000000e+00 6499.0
10 TraesCS3B01G097000 chr3A 93.072 3594 177 31 3068 6639 53043331 53039788 0.000000e+00 5192.0
11 TraesCS3B01G097000 chr3A 94.774 1282 61 3 1208 2486 53187423 53186145 0.000000e+00 1991.0
12 TraesCS3B01G097000 chr3A 86.802 788 44 22 441 1212 53188191 53187448 0.000000e+00 824.0
13 TraesCS3B01G097000 chr3A 88.509 409 22 3 6751 7151 53039791 53039400 8.400000e-129 472.0
14 TraesCS3B01G097000 chr3A 91.489 235 16 4 6910 7142 53181867 53181635 3.220000e-83 320.0
15 TraesCS3B01G097000 chr3A 97.080 137 4 0 6751 6887 53181987 53181851 1.550000e-56 231.0
16 TraesCS3B01G097000 chr3A 84.038 213 11 7 444 640 53189131 53188926 4.410000e-42 183.0
17 TraesCS3B01G097000 chr5B 79.934 304 43 10 111 396 708340016 708339713 2.610000e-49 207.0
18 TraesCS3B01G097000 chr2B 79.932 294 43 8 113 396 785215447 785215734 1.220000e-47 202.0
19 TraesCS3B01G097000 chr2B 90.840 131 10 2 6623 6753 349929004 349929132 2.650000e-39 174.0
20 TraesCS3B01G097000 chr6D 95.798 119 5 0 6637 6755 348647454 348647336 7.320000e-45 193.0
21 TraesCS3B01G097000 chr6D 81.553 103 14 5 113 213 20942009 20942108 5.950000e-11 80.5
22 TraesCS3B01G097000 chr2D 94.118 119 7 0 6636 6754 119065973 119065855 1.580000e-41 182.0
23 TraesCS3B01G097000 chr1A 93.496 123 6 2 6635 6756 86576551 86576672 1.580000e-41 182.0
24 TraesCS3B01G097000 chr1A 87.500 48 6 0 268 315 402931404 402931357 1.000000e-03 56.5
25 TraesCS3B01G097000 chr4D 93.443 122 7 1 6637 6758 367722346 367722226 5.700000e-41 180.0
26 TraesCS3B01G097000 chr6B 88.112 143 15 2 6611 6753 325033291 325033151 1.230000e-37 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G097000 chr3B 64699982 64707132 7150 True 13206.000000 13206 100.000000 1 7151 1 chr3B.!!$R1 7150
1 TraesCS3B01G097000 chr3D 41670252 41676914 6662 True 2320.625000 8139 91.018000 66 7151 4 chr3D.!!$R3 7085
2 TraesCS3B01G097000 chr3A 53039400 53043331 3931 True 2832.000000 5192 90.790500 3068 7151 2 chr3A.!!$R1 4083
3 TraesCS3B01G097000 chr3A 53181635 53189131 7496 True 1674.666667 6499 91.487667 441 7142 6 chr3A.!!$R2 6701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.035439 AGGACGGCCAACCAACTATG 60.035 55.0 11.69 0.00 36.29 2.23 F
194 195 0.036732 TTGGCCGCAGTGAGAAATCT 59.963 50.0 0.00 0.00 0.00 2.40 F
402 403 0.037605 ACGGAGGCAAGGACTTTACG 60.038 55.0 0.00 0.00 0.00 3.18 F
403 404 0.037605 CGGAGGCAAGGACTTTACGT 60.038 55.0 0.00 0.00 0.00 3.57 F
1151 1693 0.179048 CGCAGGCAACCATCTATCCA 60.179 55.0 0.00 0.00 37.17 3.41 F
2022 2619 0.250467 TGACTCTGCAGAACAAGCCC 60.250 55.0 18.85 2.71 0.00 5.19 F
2942 3581 1.109323 AGCCTGCACAAAAGTGGGAC 61.109 55.0 0.00 0.00 0.00 4.46 F
3236 3877 1.131638 TCCTGCCAGTGTTTGAGACT 58.868 50.0 0.00 0.00 0.00 3.24 F
4985 5635 0.179009 AGAAGGTTCAAGCAGCAGCA 60.179 50.0 3.17 0.00 45.49 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1273 1867 0.606604 TTTAGTCTCCTGGTCACCGC 59.393 55.000 0.00 0.00 0.00 5.68 R
1977 2574 0.615331 CTGCTAGAAGTTCCAGGGCA 59.385 55.000 0.00 4.63 0.00 5.36 R
2195 2792 1.497991 TGTTTTTCCGCTCGTCTGAG 58.502 50.000 0.00 0.00 45.49 3.35 R
2273 2870 7.013083 CCATCCAATAATGACTCCTTCTTTGAG 59.987 40.741 0.00 0.00 35.92 3.02 R
2919 3558 0.936297 CACTTTTGTGCAGGCTTCGC 60.936 55.000 0.00 0.00 44.07 4.70 R
3716 4357 1.779569 GATATTGGTAGTCACGGGCG 58.220 55.000 0.00 0.00 0.00 6.13 R
4527 5168 0.035725 CAGATGGTTCAGCCTCTGCA 60.036 55.000 0.00 0.00 41.13 4.41 R
5134 5784 0.251386 TCTCTGTCGAGCCTGGTCTT 60.251 55.000 0.00 0.00 37.19 3.01 R
6639 7337 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.793071 CACTCTGATACATGGATCTCGAC 58.207 47.826 18.82 0.00 0.00 4.20
23 24 3.823873 ACTCTGATACATGGATCTCGACC 59.176 47.826 18.82 0.00 0.00 4.79
24 25 3.157881 TCTGATACATGGATCTCGACCC 58.842 50.000 18.82 0.00 0.00 4.46
25 26 1.886542 TGATACATGGATCTCGACCCG 59.113 52.381 18.82 0.00 0.00 5.28
27 28 1.792118 TACATGGATCTCGACCCGCG 61.792 60.000 0.00 0.00 42.69 6.46
36 37 2.813474 CGACCCGCGATTTGCTCA 60.813 61.111 8.23 0.00 44.57 4.26
37 38 2.173669 CGACCCGCGATTTGCTCAT 61.174 57.895 8.23 0.00 44.57 2.90
38 39 1.353103 GACCCGCGATTTGCTCATG 59.647 57.895 8.23 0.00 43.27 3.07
39 40 2.051804 GACCCGCGATTTGCTCATGG 62.052 60.000 8.23 0.00 43.27 3.66
40 41 2.114670 CCCGCGATTTGCTCATGGT 61.115 57.895 8.23 0.00 43.27 3.55
41 42 0.813610 CCCGCGATTTGCTCATGGTA 60.814 55.000 8.23 0.00 43.27 3.25
43 44 1.003545 CCGCGATTTGCTCATGGTAAG 60.004 52.381 8.23 0.00 43.27 2.34
44 45 1.595489 CGCGATTTGCTCATGGTAAGC 60.595 52.381 0.00 0.00 43.27 3.09
54 55 5.744171 TGCTCATGGTAAGCAGAGAATTTA 58.256 37.500 3.57 0.00 44.51 1.40
55 56 6.359804 TGCTCATGGTAAGCAGAGAATTTAT 58.640 36.000 3.57 0.00 44.51 1.40
57 58 7.992608 TGCTCATGGTAAGCAGAGAATTTATTA 59.007 33.333 3.57 0.00 44.51 0.98
64 65 9.952188 GGTAAGCAGAGAATTTATTATTTGACC 57.048 33.333 0.00 0.00 0.00 4.02
98 99 2.806244 ACCAACTACGCAGATTTGACAC 59.194 45.455 0.00 0.00 0.00 3.67
113 114 5.854010 TTTGACACTAGAGGAGCGAATAT 57.146 39.130 0.00 0.00 0.00 1.28
114 115 5.854010 TTGACACTAGAGGAGCGAATATT 57.146 39.130 0.00 0.00 0.00 1.28
115 116 6.954487 TTGACACTAGAGGAGCGAATATTA 57.046 37.500 0.00 0.00 0.00 0.98
117 118 7.342769 TGACACTAGAGGAGCGAATATTAAA 57.657 36.000 0.00 0.00 0.00 1.52
118 119 7.778083 TGACACTAGAGGAGCGAATATTAAAA 58.222 34.615 0.00 0.00 0.00 1.52
119 120 7.705325 TGACACTAGAGGAGCGAATATTAAAAC 59.295 37.037 0.00 0.00 0.00 2.43
120 121 7.783042 ACACTAGAGGAGCGAATATTAAAACT 58.217 34.615 0.00 0.00 0.00 2.66
128 129 9.780186 AGGAGCGAATATTAAAACTATTAAGCT 57.220 29.630 8.37 8.37 36.34 3.74
139 140 6.963049 AAACTATTAAGCTACGTGTGAAGG 57.037 37.500 0.00 0.00 0.00 3.46
140 141 5.909621 ACTATTAAGCTACGTGTGAAGGA 57.090 39.130 0.00 0.00 0.00 3.36
141 142 5.648572 ACTATTAAGCTACGTGTGAAGGAC 58.351 41.667 0.00 0.00 0.00 3.85
143 144 0.038526 AAGCTACGTGTGAAGGACGG 60.039 55.000 0.00 0.00 41.21 4.79
144 145 2.092882 GCTACGTGTGAAGGACGGC 61.093 63.158 0.00 0.00 41.21 5.68
145 146 1.445582 CTACGTGTGAAGGACGGCC 60.446 63.158 0.00 0.00 41.21 6.13
146 147 2.149803 CTACGTGTGAAGGACGGCCA 62.150 60.000 11.69 0.00 41.21 5.36
148 149 2.604174 CGTGTGAAGGACGGCCAAC 61.604 63.158 11.69 5.27 36.29 3.77
149 150 2.112297 TGTGAAGGACGGCCAACC 59.888 61.111 11.69 5.15 36.29 3.77
150 151 2.112297 GTGAAGGACGGCCAACCA 59.888 61.111 11.69 0.00 36.29 3.67
152 153 1.527380 TGAAGGACGGCCAACCAAC 60.527 57.895 11.69 10.14 36.29 3.77
153 154 1.228154 GAAGGACGGCCAACCAACT 60.228 57.895 11.69 1.95 36.29 3.16
154 155 0.035739 GAAGGACGGCCAACCAACTA 59.964 55.000 11.69 0.00 36.29 2.24
156 157 0.035439 AGGACGGCCAACCAACTATG 60.035 55.000 11.69 0.00 36.29 2.23
157 158 1.654023 GGACGGCCAACCAACTATGC 61.654 60.000 0.00 0.00 34.57 3.14
158 159 1.654023 GACGGCCAACCAACTATGCC 61.654 60.000 2.24 0.00 38.74 4.40
159 160 1.677300 CGGCCAACCAACTATGCCA 60.677 57.895 2.24 0.00 42.27 4.92
161 162 0.461135 GGCCAACCAACTATGCCATG 59.539 55.000 0.00 0.00 41.76 3.66
162 163 1.185315 GCCAACCAACTATGCCATGT 58.815 50.000 0.00 0.00 0.00 3.21
163 164 1.135024 GCCAACCAACTATGCCATGTG 60.135 52.381 0.00 0.00 0.00 3.21
164 165 1.477700 CCAACCAACTATGCCATGTGG 59.522 52.381 0.00 0.00 38.53 4.17
189 190 3.939939 TGCTTGGCCGCAGTGAGA 61.940 61.111 0.59 0.00 34.44 3.27
190 191 2.669569 GCTTGGCCGCAGTGAGAA 60.670 61.111 0.00 0.00 0.00 2.87
191 192 2.260869 GCTTGGCCGCAGTGAGAAA 61.261 57.895 0.00 0.00 0.00 2.52
192 193 1.589716 GCTTGGCCGCAGTGAGAAAT 61.590 55.000 0.00 0.00 0.00 2.17
193 194 0.449388 CTTGGCCGCAGTGAGAAATC 59.551 55.000 0.00 0.00 0.00 2.17
194 195 0.036732 TTGGCCGCAGTGAGAAATCT 59.963 50.000 0.00 0.00 0.00 2.40
195 196 0.036732 TGGCCGCAGTGAGAAATCTT 59.963 50.000 0.00 0.00 0.00 2.40
198 199 2.589014 GCCGCAGTGAGAAATCTTTTG 58.411 47.619 0.00 0.00 0.00 2.44
199 200 2.589014 CCGCAGTGAGAAATCTTTTGC 58.411 47.619 0.00 5.29 0.00 3.68
200 201 2.227388 CCGCAGTGAGAAATCTTTTGCT 59.773 45.455 0.00 0.00 0.00 3.91
201 202 3.436704 CCGCAGTGAGAAATCTTTTGCTA 59.563 43.478 0.00 0.00 0.00 3.49
202 203 4.083324 CCGCAGTGAGAAATCTTTTGCTAA 60.083 41.667 0.00 0.00 0.00 3.09
204 205 6.088824 CGCAGTGAGAAATCTTTTGCTAATT 58.911 36.000 0.00 0.00 0.00 1.40
205 206 6.583806 CGCAGTGAGAAATCTTTTGCTAATTT 59.416 34.615 0.00 0.00 0.00 1.82
206 207 7.115378 CGCAGTGAGAAATCTTTTGCTAATTTT 59.885 33.333 0.00 0.00 0.00 1.82
207 208 8.768019 GCAGTGAGAAATCTTTTGCTAATTTTT 58.232 29.630 0.00 0.00 0.00 1.94
266 267 8.783833 TTTTTAGATGAAGATGAGGACTTCTG 57.216 34.615 0.00 0.00 42.63 3.02
267 268 6.477053 TTAGATGAAGATGAGGACTTCTGG 57.523 41.667 0.00 0.00 42.63 3.86
268 269 4.360889 AGATGAAGATGAGGACTTCTGGT 58.639 43.478 0.00 0.00 42.63 4.00
269 270 5.523588 AGATGAAGATGAGGACTTCTGGTA 58.476 41.667 0.00 0.00 42.63 3.25
270 271 6.142498 AGATGAAGATGAGGACTTCTGGTAT 58.858 40.000 0.00 0.00 42.63 2.73
271 272 6.614906 AGATGAAGATGAGGACTTCTGGTATT 59.385 38.462 0.00 0.00 42.63 1.89
272 273 6.627087 TGAAGATGAGGACTTCTGGTATTT 57.373 37.500 0.00 0.00 42.63 1.40
273 274 7.020827 TGAAGATGAGGACTTCTGGTATTTT 57.979 36.000 0.00 0.00 42.63 1.82
274 275 7.461749 TGAAGATGAGGACTTCTGGTATTTTT 58.538 34.615 0.00 0.00 42.63 1.94
307 308 3.125200 TGCAAAATGGCATTCGCTG 57.875 47.368 25.64 18.57 39.25 5.18
308 309 0.390078 TGCAAAATGGCATTCGCTGG 60.390 50.000 25.64 7.94 39.25 4.85
309 310 0.390209 GCAAAATGGCATTCGCTGGT 60.390 50.000 21.06 1.32 38.60 4.00
310 311 1.135141 GCAAAATGGCATTCGCTGGTA 60.135 47.619 21.06 0.00 38.60 3.25
311 312 2.801063 CAAAATGGCATTCGCTGGTAG 58.199 47.619 14.04 0.00 38.60 3.18
312 313 1.392589 AAATGGCATTCGCTGGTAGG 58.607 50.000 14.04 0.00 38.60 3.18
313 314 1.103398 AATGGCATTCGCTGGTAGGC 61.103 55.000 6.96 0.00 38.60 3.93
314 315 1.987807 ATGGCATTCGCTGGTAGGCT 61.988 55.000 0.00 0.00 38.60 4.58
315 316 2.182842 GGCATTCGCTGGTAGGCTG 61.183 63.158 0.00 0.00 38.60 4.85
316 317 2.182842 GCATTCGCTGGTAGGCTGG 61.183 63.158 0.00 0.00 34.30 4.85
317 318 1.221840 CATTCGCTGGTAGGCTGGT 59.778 57.895 0.00 0.00 0.00 4.00
318 319 1.091771 CATTCGCTGGTAGGCTGGTG 61.092 60.000 0.00 0.00 0.00 4.17
319 320 1.553690 ATTCGCTGGTAGGCTGGTGT 61.554 55.000 0.00 0.00 0.00 4.16
320 321 2.434884 CGCTGGTAGGCTGGTGTG 60.435 66.667 0.00 0.00 0.00 3.82
321 322 2.045926 GCTGGTAGGCTGGTGTGG 60.046 66.667 0.00 0.00 0.00 4.17
322 323 2.895424 GCTGGTAGGCTGGTGTGGT 61.895 63.158 0.00 0.00 0.00 4.16
323 324 1.003355 CTGGTAGGCTGGTGTGGTG 60.003 63.158 0.00 0.00 0.00 4.17
324 325 1.460497 TGGTAGGCTGGTGTGGTGA 60.460 57.895 0.00 0.00 0.00 4.02
325 326 0.840288 TGGTAGGCTGGTGTGGTGAT 60.840 55.000 0.00 0.00 0.00 3.06
326 327 0.328258 GGTAGGCTGGTGTGGTGATT 59.672 55.000 0.00 0.00 0.00 2.57
327 328 1.271926 GGTAGGCTGGTGTGGTGATTT 60.272 52.381 0.00 0.00 0.00 2.17
330 331 1.963515 AGGCTGGTGTGGTGATTTTTC 59.036 47.619 0.00 0.00 0.00 2.29
331 332 1.963515 GGCTGGTGTGGTGATTTTTCT 59.036 47.619 0.00 0.00 0.00 2.52
332 333 2.365293 GGCTGGTGTGGTGATTTTTCTT 59.635 45.455 0.00 0.00 0.00 2.52
333 334 3.181466 GGCTGGTGTGGTGATTTTTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
396 397 2.467566 TTTTAGACGGAGGCAAGGAC 57.532 50.000 0.00 0.00 0.00 3.85
397 398 1.640917 TTTAGACGGAGGCAAGGACT 58.359 50.000 0.00 0.00 0.00 3.85
398 399 1.640917 TTAGACGGAGGCAAGGACTT 58.359 50.000 0.00 0.00 0.00 3.01
399 400 1.640917 TAGACGGAGGCAAGGACTTT 58.359 50.000 0.00 0.00 0.00 2.66
400 401 1.640917 AGACGGAGGCAAGGACTTTA 58.359 50.000 0.00 0.00 0.00 1.85
401 402 1.275573 AGACGGAGGCAAGGACTTTAC 59.724 52.381 0.00 0.00 0.00 2.01
402 403 0.037605 ACGGAGGCAAGGACTTTACG 60.038 55.000 0.00 0.00 0.00 3.18
403 404 0.037605 CGGAGGCAAGGACTTTACGT 60.038 55.000 0.00 0.00 0.00 3.57
405 406 2.501261 GGAGGCAAGGACTTTACGTTT 58.499 47.619 0.00 0.00 0.00 3.60
429 430 6.507890 TTTTTAAATAAAAACGTGACGCCC 57.492 33.333 4.25 0.00 39.46 6.13
431 432 1.606903 AATAAAAACGTGACGCCCCA 58.393 45.000 4.25 0.00 0.00 4.96
432 433 1.606903 ATAAAAACGTGACGCCCCAA 58.393 45.000 4.25 0.00 0.00 4.12
433 434 1.606903 TAAAAACGTGACGCCCCAAT 58.393 45.000 4.25 0.00 0.00 3.16
434 435 0.312729 AAAAACGTGACGCCCCAATC 59.687 50.000 4.25 0.00 0.00 2.67
437 438 2.047274 CGTGACGCCCCAATCACT 60.047 61.111 0.00 0.00 42.56 3.41
439 440 0.806102 CGTGACGCCCCAATCACTAG 60.806 60.000 0.00 0.00 42.56 2.57
474 975 3.703420 GTGTACAGCCTGATAACCGTAG 58.297 50.000 0.00 0.00 0.00 3.51
499 1004 1.135689 GCACGCGTTCCATTTTCTCAT 60.136 47.619 10.22 0.00 0.00 2.90
517 1022 5.389520 TCTCATGATTTTGTTGGGGTACAA 58.610 37.500 0.00 0.00 36.30 2.41
546 1056 2.621556 TTATTCCTGCCCCAAAAGCT 57.378 45.000 0.00 0.00 0.00 3.74
638 1148 4.434354 TCCCCCAAATTCGGCCGG 62.434 66.667 27.83 8.55 0.00 6.13
643 1153 1.376683 CCAAATTCGGCCGGACTCA 60.377 57.895 27.83 1.12 0.00 3.41
688 1209 0.324460 CGTCCCAGTACCCTCCTCTT 60.324 60.000 0.00 0.00 0.00 2.85
697 1218 2.038975 CCTCCTCTTCCCCGACCA 59.961 66.667 0.00 0.00 0.00 4.02
709 1230 1.302192 CCGACCAACCAATCCGTGT 60.302 57.895 0.00 0.00 0.00 4.49
866 1406 1.090052 CCTCCGCGATTTCTGGGTTC 61.090 60.000 8.23 0.00 0.00 3.62
872 1412 0.447801 CGATTTCTGGGTTCGCCTTG 59.552 55.000 0.00 0.00 37.45 3.61
988 1530 1.349067 AGTTAACCCTCTTCCGTGCT 58.651 50.000 0.88 0.00 0.00 4.40
1005 1547 0.249322 GCTCGCGCCTAGGTGAATTA 60.249 55.000 26.74 6.36 0.00 1.40
1130 1672 2.621055 CGACATCGAGAGGAAGATCCTT 59.379 50.000 0.00 0.00 44.62 3.36
1142 1684 0.678048 AGATCCTTTCGCAGGCAACC 60.678 55.000 0.00 0.00 43.55 3.77
1146 1688 0.962356 CCTTTCGCAGGCAACCATCT 60.962 55.000 0.00 0.00 35.13 2.90
1151 1693 0.179048 CGCAGGCAACCATCTATCCA 60.179 55.000 0.00 0.00 37.17 3.41
1154 1696 2.787994 CAGGCAACCATCTATCCATCC 58.212 52.381 0.00 0.00 37.17 3.51
1156 1698 1.707427 GGCAACCATCTATCCATCCCT 59.293 52.381 0.00 0.00 0.00 4.20
1158 1700 2.290577 GCAACCATCTATCCATCCCTCC 60.291 54.545 0.00 0.00 0.00 4.30
1160 1702 3.654806 CAACCATCTATCCATCCCTCCTT 59.345 47.826 0.00 0.00 0.00 3.36
1164 1706 4.539293 CCATCTATCCATCCCTCCTTCATT 59.461 45.833 0.00 0.00 0.00 2.57
1168 1710 5.853922 TCTATCCATCCCTCCTTCATTCATT 59.146 40.000 0.00 0.00 0.00 2.57
1184 1726 6.314018 TCATTCATTCATTCGTTTTCTTCCG 58.686 36.000 0.00 0.00 0.00 4.30
1196 1738 1.021202 TTCTTCCGGTGCACAACAAG 58.979 50.000 20.43 15.63 0.00 3.16
1288 1882 3.311110 TGGCGGTGACCAGGAGAC 61.311 66.667 1.11 0.00 33.75 3.36
1343 1937 1.447317 AACTGCACCAGAAACTGCGG 61.447 55.000 0.00 0.00 44.15 5.69
1376 1970 0.829333 AGATCGATGCTGTGGCTTCT 59.171 50.000 0.54 0.00 39.52 2.85
1382 1976 2.704572 GATGCTGTGGCTTCTACACTT 58.295 47.619 0.00 0.00 39.52 3.16
1421 2015 2.200170 CTGGAAAGAAAAGCGGCGGG 62.200 60.000 9.78 0.00 0.00 6.13
1670 2267 0.322816 TGCTGGTTGAAGATGAGCCC 60.323 55.000 0.00 0.00 0.00 5.19
1724 2321 1.201647 CCTAAGAAGAAGTCGCCGACA 59.798 52.381 20.65 0.00 34.60 4.35
1929 2526 1.494960 AGAGCTGATCAGGAAGGGTC 58.505 55.000 23.89 13.11 0.00 4.46
1977 2574 2.601481 CTTTGAGAAGCGCGTTGAAT 57.399 45.000 8.43 0.00 0.00 2.57
2022 2619 0.250467 TGACTCTGCAGAACAAGCCC 60.250 55.000 18.85 2.71 0.00 5.19
2393 2990 5.123979 CAGTCAGGTTTCCTTATTTGCTACC 59.876 44.000 0.00 0.00 0.00 3.18
2422 3019 4.810191 ACCAAGATACCTCAGTGAACTC 57.190 45.455 0.00 0.00 0.00 3.01
2459 3056 2.089980 GCAGTTGCAGATGAGGATGTT 58.910 47.619 4.54 0.00 41.59 2.71
2504 3143 6.350629 TCTGTGTCTGAGAATGAAGATGAA 57.649 37.500 0.00 0.00 0.00 2.57
2849 3488 6.728200 TGATTCTGCAAACAGTTCAAGTAAG 58.272 36.000 0.00 0.00 44.77 2.34
2867 3506 2.998316 AGAAGGGCAAGAGATACAGC 57.002 50.000 0.00 0.00 0.00 4.40
2918 3557 2.479730 CGATCAGGAAGAGGTTACACGG 60.480 54.545 0.00 0.00 0.00 4.94
2919 3558 1.263356 TCAGGAAGAGGTTACACGGG 58.737 55.000 0.00 0.00 0.00 5.28
2942 3581 1.109323 AGCCTGCACAAAAGTGGGAC 61.109 55.000 0.00 0.00 0.00 4.46
3101 3740 5.615925 ATCCTAATGCCGAAGTAACTCTT 57.384 39.130 0.00 0.00 39.32 2.85
3236 3877 1.131638 TCCTGCCAGTGTTTGAGACT 58.868 50.000 0.00 0.00 0.00 3.24
3485 4126 6.817765 TCAGAGGTGGAACAAATATTTGAC 57.182 37.500 30.18 22.05 44.16 3.18
3592 4233 6.672266 TCAGAATCCTGACTATGGGAATAC 57.328 41.667 0.00 0.00 44.01 1.89
3629 4270 3.817647 AGATGAAAGTGGTTGAGCAAGTC 59.182 43.478 0.00 0.00 0.00 3.01
3716 4357 5.299279 TGACATTTTGGAGAACTTCTTGACC 59.701 40.000 0.00 0.00 0.00 4.02
3722 4363 1.301479 GAACTTCTTGACCGCCCGT 60.301 57.895 0.00 0.00 0.00 5.28
3932 4573 3.181451 ACATGCAGGTATAGTCCATGTGG 60.181 47.826 0.06 0.00 43.28 4.17
3934 4575 2.700371 TGCAGGTATAGTCCATGTGGAG 59.300 50.000 1.07 0.00 46.49 3.86
3940 4581 5.250774 AGGTATAGTCCATGTGGAGTTTTGT 59.749 40.000 14.21 2.82 45.26 2.83
3942 4583 2.863809 AGTCCATGTGGAGTTTTGTCC 58.136 47.619 1.07 0.00 45.26 4.02
3943 4584 2.174639 AGTCCATGTGGAGTTTTGTCCA 59.825 45.455 1.07 0.00 45.26 4.02
3950 4591 1.133915 TGGAGTTTTGTCCACCCTGTC 60.134 52.381 0.00 0.00 41.99 3.51
3970 4611 6.239714 CCTGTCTATAATTCTGCACCTACCAT 60.240 42.308 0.00 0.00 0.00 3.55
3975 4616 8.150945 TCTATAATTCTGCACCTACCATCTTTC 58.849 37.037 0.00 0.00 0.00 2.62
3982 4623 3.440522 GCACCTACCATCTTTCAACCTTC 59.559 47.826 0.00 0.00 0.00 3.46
3995 4636 3.270027 TCAACCTTCGTAGATGCATTGG 58.730 45.455 0.00 0.00 35.04 3.16
4013 4654 7.097342 GCATTGGCATTCGATAAAATTACAG 57.903 36.000 0.00 0.00 40.72 2.74
4020 4661 9.048446 GGCATTCGATAAAATTACAGTAAGGTA 57.952 33.333 0.00 0.00 0.00 3.08
4074 4715 4.222336 TGGTTGACATCCAAAACTGGATT 58.778 39.130 3.85 0.00 45.80 3.01
4084 4725 3.127548 CCAAAACTGGATTCCGATGAGTG 59.872 47.826 0.00 0.00 0.00 3.51
4085 4726 3.981071 AAACTGGATTCCGATGAGTGA 57.019 42.857 0.00 0.00 0.00 3.41
4086 4727 4.494091 AAACTGGATTCCGATGAGTGAT 57.506 40.909 0.00 0.00 0.00 3.06
4087 4728 3.465742 ACTGGATTCCGATGAGTGATG 57.534 47.619 0.00 0.00 0.00 3.07
4199 4840 9.739276 TGATCACACTAACCTGATTAATCTTTT 57.261 29.630 16.24 8.93 0.00 2.27
4296 4937 3.447944 GTGGGACGATAGAGGAGAAAGTT 59.552 47.826 0.00 0.00 41.38 2.66
4377 5018 3.441500 AGGAGGTTCTTTAAAGCCAGG 57.558 47.619 10.51 0.00 0.00 4.45
4527 5168 1.968493 TCTTCAGCTTTACCGACCAGT 59.032 47.619 0.00 0.00 0.00 4.00
4984 5634 0.240411 CAGAAGGTTCAAGCAGCAGC 59.760 55.000 0.00 0.00 42.56 5.25
4985 5635 0.179009 AGAAGGTTCAAGCAGCAGCA 60.179 50.000 3.17 0.00 45.49 4.41
4986 5636 0.240411 GAAGGTTCAAGCAGCAGCAG 59.760 55.000 3.17 0.00 45.49 4.24
5041 5691 2.359230 GGCAAAGCGCTGTCCTCT 60.359 61.111 12.58 0.00 41.91 3.69
5131 5781 2.273449 CTGGGCTCCGCTTCCAAT 59.727 61.111 0.00 0.00 0.00 3.16
5134 5784 1.378514 GGGCTCCGCTTCCAATCAA 60.379 57.895 0.00 0.00 0.00 2.57
5174 5824 0.739462 CGGGCGCACATCAAACTCTA 60.739 55.000 11.77 0.00 0.00 2.43
5175 5825 1.448985 GGGCGCACATCAAACTCTAA 58.551 50.000 10.83 0.00 0.00 2.10
5591 6251 2.067365 AGGTGGCGGTTCTTTTTCTT 57.933 45.000 0.00 0.00 0.00 2.52
5639 6303 5.342017 AGCCCTTAGCCTTTTATCCTTTTT 58.658 37.500 0.00 0.00 45.47 1.94
5731 6396 4.150804 GTCTCCGTGCTTCTACTTTTCTTG 59.849 45.833 0.00 0.00 0.00 3.02
5768 6433 3.987868 GTCGTTCTGTTTCTGTATGAGCA 59.012 43.478 0.00 0.00 0.00 4.26
5863 6528 4.083110 GCAATTGCTAGGCATCGATTATGT 60.083 41.667 23.21 0.00 38.76 2.29
5865 6530 4.335400 TTGCTAGGCATCGATTATGTGA 57.665 40.909 0.00 0.00 38.76 3.58
5866 6531 4.541973 TGCTAGGCATCGATTATGTGAT 57.458 40.909 0.00 0.00 37.93 3.06
5908 6573 8.751302 ACGTTTGTTGTGAATATTTATTTCCC 57.249 30.769 0.00 0.00 0.00 3.97
5909 6574 8.581578 ACGTTTGTTGTGAATATTTATTTCCCT 58.418 29.630 0.00 0.00 0.00 4.20
5926 6591 2.157738 CCCTGCTCTCTTTTTCCACTG 58.842 52.381 0.00 0.00 0.00 3.66
5933 6598 5.012046 TGCTCTCTTTTTCCACTGATCTGTA 59.988 40.000 4.78 0.00 0.00 2.74
5997 6665 3.317993 CCAGATTTTTGGAAGACGGTGTT 59.682 43.478 0.00 0.00 40.87 3.32
6020 6688 6.942532 TGATTTTGAGCTGAAACTACACTT 57.057 33.333 0.00 0.00 0.00 3.16
6082 6750 1.962807 TGAATTCTGGTTGGTGGCAAG 59.037 47.619 7.05 0.00 0.00 4.01
6214 6882 9.121517 GATGATGTACATTTTGAGTTGAAACTG 57.878 33.333 10.30 0.00 38.19 3.16
6231 6899 7.099266 TGAAACTGCATGGTTCTTATTATGG 57.901 36.000 12.94 0.00 42.63 2.74
6238 6906 8.220755 TGCATGGTTCTTATTATGGAAGTAAC 57.779 34.615 0.00 0.00 0.00 2.50
6395 7087 2.424956 GCAGAACTCCAATTGACATCCC 59.575 50.000 7.12 0.00 0.00 3.85
6402 7094 2.649312 TCCAATTGACATCCCAGGACTT 59.351 45.455 7.12 0.00 0.00 3.01
6404 7096 3.445096 CCAATTGACATCCCAGGACTTTC 59.555 47.826 7.12 0.00 0.00 2.62
6405 7097 2.472695 TTGACATCCCAGGACTTTCG 57.527 50.000 0.00 0.00 0.00 3.46
6406 7098 1.639722 TGACATCCCAGGACTTTCGA 58.360 50.000 0.00 0.00 0.00 3.71
6422 7116 4.460382 ACTTTCGATTTCATCCACAAGCAT 59.540 37.500 0.00 0.00 0.00 3.79
6433 7127 7.172868 TCATCCACAAGCATAACATTGAATT 57.827 32.000 0.00 0.00 0.00 2.17
6446 7140 5.437289 ACATTGAATTGAGAAGCGAAACA 57.563 34.783 0.00 0.00 0.00 2.83
6467 7161 6.105397 ACATTCATTCCAGAAGCAAAACAT 57.895 33.333 0.00 0.00 0.00 2.71
6504 7198 1.218047 CGGTGATGGAGAAGCCGAA 59.782 57.895 0.00 0.00 44.57 4.30
6599 7295 7.093509 TGTGAGGATACAAACTGCAGTAGAATA 60.094 37.037 22.01 10.86 41.41 1.75
6625 7321 3.735514 GCTGGGAAACAAACTAAACGCAA 60.736 43.478 0.00 0.00 0.00 4.85
6628 7324 4.639310 TGGGAAACAAACTAAACGCAACTA 59.361 37.500 0.00 0.00 0.00 2.24
6639 7337 7.486802 ACTAAACGCAACTAAAACATGTACT 57.513 32.000 0.00 0.00 0.00 2.73
6641 7339 5.352643 AACGCAACTAAAACATGTACTCC 57.647 39.130 0.00 0.00 0.00 3.85
6642 7340 3.749609 ACGCAACTAAAACATGTACTCCC 59.250 43.478 0.00 0.00 0.00 4.30
6644 7342 4.092968 CGCAACTAAAACATGTACTCCCTC 59.907 45.833 0.00 0.00 0.00 4.30
6645 7343 4.395231 GCAACTAAAACATGTACTCCCTCC 59.605 45.833 0.00 0.00 0.00 4.30
6646 7344 4.467198 ACTAAAACATGTACTCCCTCCG 57.533 45.455 0.00 0.00 0.00 4.63
6647 7345 3.836562 ACTAAAACATGTACTCCCTCCGT 59.163 43.478 0.00 0.00 0.00 4.69
6648 7346 3.329929 AAAACATGTACTCCCTCCGTC 57.670 47.619 0.00 0.00 0.00 4.79
6649 7347 1.192428 AACATGTACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
6650 7348 1.035932 ACATGTACTCCCTCCGTCCG 61.036 60.000 0.00 0.00 0.00 4.79
6651 7349 1.455217 ATGTACTCCCTCCGTCCGG 60.455 63.158 0.00 0.00 0.00 5.14
6652 7350 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
6653 7351 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
6654 7352 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
6655 7353 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
6656 7354 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
6657 7355 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
6658 7356 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
6659 7357 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
6660 7358 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
6661 7359 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
6662 7360 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
6663 7361 2.671396 CTCCGTCCGGAAATACTTGTTG 59.329 50.000 5.23 0.00 44.66 3.33
6664 7362 2.037511 TCCGTCCGGAAATACTTGTTGT 59.962 45.455 5.23 0.00 42.05 3.32
6665 7363 3.257873 TCCGTCCGGAAATACTTGTTGTA 59.742 43.478 5.23 0.00 42.05 2.41
6666 7364 3.615496 CCGTCCGGAAATACTTGTTGTAG 59.385 47.826 5.23 0.00 37.50 2.74
6667 7365 4.487948 CGTCCGGAAATACTTGTTGTAGA 58.512 43.478 5.23 0.00 34.24 2.59
6668 7366 4.925054 CGTCCGGAAATACTTGTTGTAGAA 59.075 41.667 5.23 0.00 34.24 2.10
6669 7367 5.406175 CGTCCGGAAATACTTGTTGTAGAAA 59.594 40.000 5.23 0.00 34.24 2.52
6670 7368 6.091713 CGTCCGGAAATACTTGTTGTAGAAAT 59.908 38.462 5.23 0.00 34.24 2.17
6671 7369 7.241376 GTCCGGAAATACTTGTTGTAGAAATG 58.759 38.462 5.23 0.00 34.24 2.32
6672 7370 6.373216 TCCGGAAATACTTGTTGTAGAAATGG 59.627 38.462 0.00 0.00 34.24 3.16
6673 7371 6.373216 CCGGAAATACTTGTTGTAGAAATGGA 59.627 38.462 0.00 0.00 34.24 3.41
6674 7372 7.067008 CCGGAAATACTTGTTGTAGAAATGGAT 59.933 37.037 0.00 0.00 34.24 3.41
6675 7373 9.104965 CGGAAATACTTGTTGTAGAAATGGATA 57.895 33.333 0.00 0.00 34.24 2.59
6728 7426 8.952278 ACATCTAGATACATCTATTTCTCGGAC 58.048 37.037 4.54 0.00 38.60 4.79
6729 7427 8.951243 CATCTAGATACATCTATTTCTCGGACA 58.049 37.037 4.54 0.00 38.60 4.02
6730 7428 8.919777 TCTAGATACATCTATTTCTCGGACAA 57.080 34.615 0.00 0.00 38.60 3.18
6731 7429 9.004717 TCTAGATACATCTATTTCTCGGACAAG 57.995 37.037 0.00 0.00 38.60 3.16
6732 7430 7.589958 AGATACATCTATTTCTCGGACAAGT 57.410 36.000 0.00 0.00 34.85 3.16
6733 7431 8.693120 AGATACATCTATTTCTCGGACAAGTA 57.307 34.615 0.00 0.00 34.85 2.24
6734 7432 9.303116 AGATACATCTATTTCTCGGACAAGTAT 57.697 33.333 0.00 0.00 34.85 2.12
6735 7433 9.915629 GATACATCTATTTCTCGGACAAGTATT 57.084 33.333 0.00 0.00 0.00 1.89
6738 7436 9.099454 ACATCTATTTCTCGGACAAGTATTTTC 57.901 33.333 0.00 0.00 0.00 2.29
6739 7437 7.751047 TCTATTTCTCGGACAAGTATTTTCG 57.249 36.000 0.00 0.00 0.00 3.46
6740 7438 5.796350 ATTTCTCGGACAAGTATTTTCGG 57.204 39.130 0.00 0.00 0.00 4.30
6741 7439 4.524316 TTCTCGGACAAGTATTTTCGGA 57.476 40.909 0.00 0.00 0.00 4.55
6742 7440 3.841643 TCTCGGACAAGTATTTTCGGAC 58.158 45.455 0.00 0.00 0.00 4.79
6743 7441 2.928116 CTCGGACAAGTATTTTCGGACC 59.072 50.000 0.00 0.00 0.00 4.46
6744 7442 1.657094 CGGACAAGTATTTTCGGACCG 59.343 52.381 7.84 7.84 0.00 4.79
6745 7443 2.671914 CGGACAAGTATTTTCGGACCGA 60.672 50.000 13.88 13.88 40.16 4.69
6746 7444 2.928116 GGACAAGTATTTTCGGACCGAG 59.072 50.000 17.51 5.32 37.14 4.63
6747 7445 2.928116 GACAAGTATTTTCGGACCGAGG 59.072 50.000 17.51 3.47 37.14 4.63
6748 7446 2.277084 CAAGTATTTTCGGACCGAGGG 58.723 52.381 17.51 0.00 37.14 4.30
6749 7447 1.856629 AGTATTTTCGGACCGAGGGA 58.143 50.000 17.51 7.50 37.14 4.20
6750 7448 1.755380 AGTATTTTCGGACCGAGGGAG 59.245 52.381 17.51 0.00 37.14 4.30
6751 7449 1.479730 GTATTTTCGGACCGAGGGAGT 59.520 52.381 17.51 6.92 37.14 3.85
6752 7450 1.856629 ATTTTCGGACCGAGGGAGTA 58.143 50.000 17.51 0.00 37.14 2.59
6753 7451 0.890683 TTTTCGGACCGAGGGAGTAC 59.109 55.000 17.51 0.00 37.14 2.73
6754 7452 0.251297 TTTCGGACCGAGGGAGTACA 60.251 55.000 17.51 0.00 37.14 2.90
6755 7453 0.962356 TTCGGACCGAGGGAGTACAC 60.962 60.000 17.51 0.00 37.14 2.90
6756 7454 1.676635 CGGACCGAGGGAGTACACA 60.677 63.158 8.64 0.00 0.00 3.72
6757 7455 1.035932 CGGACCGAGGGAGTACACAT 61.036 60.000 8.64 0.00 0.00 3.21
6758 7456 1.192428 GGACCGAGGGAGTACACATT 58.808 55.000 0.00 0.00 0.00 2.71
6759 7457 1.134788 GGACCGAGGGAGTACACATTG 60.135 57.143 0.00 0.00 0.00 2.82
6807 7505 4.873827 AGACTGTAAAGCAAACGTTTCTGA 59.126 37.500 11.37 1.71 0.00 3.27
7078 7819 3.531538 GGACGAAAACCTGATAGCATCA 58.468 45.455 0.00 0.00 37.76 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.823873 GGTCGAGATCCATGTATCAGAGT 59.176 47.826 0.73 0.00 0.00 3.24
2 3 3.192422 GGGTCGAGATCCATGTATCAGAG 59.808 52.174 0.73 0.00 0.00 3.35
3 4 3.157881 GGGTCGAGATCCATGTATCAGA 58.842 50.000 0.73 0.00 0.00 3.27
4 5 2.095008 CGGGTCGAGATCCATGTATCAG 60.095 54.545 3.05 0.00 0.00 2.90
5 6 1.886542 CGGGTCGAGATCCATGTATCA 59.113 52.381 3.05 0.00 0.00 2.15
6 7 1.402984 GCGGGTCGAGATCCATGTATC 60.403 57.143 3.05 0.00 0.00 2.24
7 8 0.603569 GCGGGTCGAGATCCATGTAT 59.396 55.000 3.05 0.00 0.00 2.29
8 9 1.792118 CGCGGGTCGAGATCCATGTA 61.792 60.000 0.00 0.00 41.67 2.29
9 10 2.815308 GCGGGTCGAGATCCATGT 59.185 61.111 3.05 0.00 0.00 3.21
10 11 2.355126 CGCGGGTCGAGATCCATG 60.355 66.667 0.00 0.00 41.67 3.66
11 12 2.518587 TCGCGGGTCGAGATCCAT 60.519 61.111 6.13 0.00 43.16 3.41
24 25 4.129236 TGCTTACCATGAGCAAATCGCG 62.129 50.000 0.00 0.00 46.35 5.87
25 26 1.401552 TGCTTACCATGAGCAAATCGC 59.598 47.619 5.17 0.00 46.35 4.58
32 33 6.874288 ATAAATTCTCTGCTTACCATGAGC 57.126 37.500 0.00 0.00 40.53 4.26
38 39 9.952188 GGTCAAATAATAAATTCTCTGCTTACC 57.048 33.333 0.00 0.00 0.00 2.85
41 42 9.860898 GTTGGTCAAATAATAAATTCTCTGCTT 57.139 29.630 0.00 0.00 0.00 3.91
43 44 9.638239 TTGTTGGTCAAATAATAAATTCTCTGC 57.362 29.630 0.00 0.00 32.64 4.26
57 58 9.088987 AGTTGGTCTATTTATTGTTGGTCAAAT 57.911 29.630 0.00 0.00 39.62 2.32
60 61 7.332430 CGTAGTTGGTCTATTTATTGTTGGTCA 59.668 37.037 0.00 0.00 0.00 4.02
61 62 7.675637 GCGTAGTTGGTCTATTTATTGTTGGTC 60.676 40.741 0.00 0.00 0.00 4.02
62 63 6.093082 GCGTAGTTGGTCTATTTATTGTTGGT 59.907 38.462 0.00 0.00 0.00 3.67
63 64 6.092944 TGCGTAGTTGGTCTATTTATTGTTGG 59.907 38.462 0.00 0.00 0.00 3.77
64 65 7.064134 TCTGCGTAGTTGGTCTATTTATTGTTG 59.936 37.037 0.00 0.00 0.00 3.33
113 114 8.928733 CCTTCACACGTAGCTTAATAGTTTTAA 58.071 33.333 0.00 0.00 0.00 1.52
114 115 8.306038 TCCTTCACACGTAGCTTAATAGTTTTA 58.694 33.333 0.00 0.00 0.00 1.52
115 116 7.117379 GTCCTTCACACGTAGCTTAATAGTTTT 59.883 37.037 0.00 0.00 0.00 2.43
117 118 6.098017 GTCCTTCACACGTAGCTTAATAGTT 58.902 40.000 0.00 0.00 0.00 2.24
118 119 5.648572 GTCCTTCACACGTAGCTTAATAGT 58.351 41.667 0.00 0.00 0.00 2.12
119 120 4.733887 CGTCCTTCACACGTAGCTTAATAG 59.266 45.833 0.00 0.00 32.41 1.73
120 121 4.439153 CCGTCCTTCACACGTAGCTTAATA 60.439 45.833 0.00 0.00 35.39 0.98
123 124 1.200716 CCGTCCTTCACACGTAGCTTA 59.799 52.381 0.00 0.00 35.39 3.09
126 127 2.092882 GCCGTCCTTCACACGTAGC 61.093 63.158 0.00 0.00 35.39 3.58
128 129 1.746322 TTGGCCGTCCTTCACACGTA 61.746 55.000 0.00 0.00 35.39 3.57
131 132 2.258726 GGTTGGCCGTCCTTCACAC 61.259 63.158 8.54 0.00 0.00 3.82
134 135 1.527380 GTTGGTTGGCCGTCCTTCA 60.527 57.895 15.48 0.00 37.67 3.02
136 137 0.696501 ATAGTTGGTTGGCCGTCCTT 59.303 50.000 15.48 5.80 37.67 3.36
139 140 1.654023 GGCATAGTTGGTTGGCCGTC 61.654 60.000 0.00 0.00 37.67 4.79
140 141 1.677633 GGCATAGTTGGTTGGCCGT 60.678 57.895 0.00 0.00 37.67 5.68
141 142 3.196648 GGCATAGTTGGTTGGCCG 58.803 61.111 0.00 0.00 37.67 6.13
143 144 1.135024 CACATGGCATAGTTGGTTGGC 60.135 52.381 0.00 0.00 38.77 4.52
144 145 1.477700 CCACATGGCATAGTTGGTTGG 59.522 52.381 0.00 0.00 0.00 3.77
145 146 2.945447 CCACATGGCATAGTTGGTTG 57.055 50.000 0.00 0.00 0.00 3.77
157 158 4.789075 GCAGCTTGCGCCACATGG 62.789 66.667 4.18 0.00 36.60 3.66
173 174 1.589716 ATTTCTCACTGCGGCCAAGC 61.590 55.000 2.24 0.00 37.71 4.01
175 176 0.036732 AGATTTCTCACTGCGGCCAA 59.963 50.000 2.24 0.00 0.00 4.52
176 177 0.036732 AAGATTTCTCACTGCGGCCA 59.963 50.000 2.24 0.00 0.00 5.36
177 178 1.168714 AAAGATTTCTCACTGCGGCC 58.831 50.000 0.00 0.00 0.00 6.13
178 179 2.589014 CAAAAGATTTCTCACTGCGGC 58.411 47.619 0.00 0.00 0.00 6.53
240 241 9.393512 CAGAAGTCCTCATCTTCATCTAAAAAT 57.606 33.333 8.10 0.00 42.35 1.82
241 242 7.826252 CCAGAAGTCCTCATCTTCATCTAAAAA 59.174 37.037 8.10 0.00 42.35 1.94
242 243 7.038017 ACCAGAAGTCCTCATCTTCATCTAAAA 60.038 37.037 8.10 0.00 42.35 1.52
246 247 4.360889 ACCAGAAGTCCTCATCTTCATCT 58.639 43.478 8.10 0.00 42.35 2.90
247 248 4.751767 ACCAGAAGTCCTCATCTTCATC 57.248 45.455 8.10 0.00 42.35 2.92
248 249 6.821616 AATACCAGAAGTCCTCATCTTCAT 57.178 37.500 8.10 0.00 42.35 2.57
273 274 8.891720 GCCATTTTGCATAATCCTTCATTTAAA 58.108 29.630 0.00 0.00 0.00 1.52
274 275 8.045507 TGCCATTTTGCATAATCCTTCATTTAA 58.954 29.630 0.00 0.00 36.04 1.52
275 276 7.563020 TGCCATTTTGCATAATCCTTCATTTA 58.437 30.769 0.00 0.00 36.04 1.40
276 277 6.416415 TGCCATTTTGCATAATCCTTCATTT 58.584 32.000 0.00 0.00 36.04 2.32
277 278 5.991861 TGCCATTTTGCATAATCCTTCATT 58.008 33.333 0.00 0.00 36.04 2.57
278 279 5.617528 TGCCATTTTGCATAATCCTTCAT 57.382 34.783 0.00 0.00 36.04 2.57
289 290 0.390078 CCAGCGAATGCCATTTTGCA 60.390 50.000 15.18 0.17 46.94 4.08
290 291 0.390209 ACCAGCGAATGCCATTTTGC 60.390 50.000 7.32 7.32 44.31 3.68
291 292 2.480073 CCTACCAGCGAATGCCATTTTG 60.480 50.000 0.00 0.00 44.31 2.44
292 293 1.750778 CCTACCAGCGAATGCCATTTT 59.249 47.619 0.00 0.00 44.31 1.82
295 296 1.526917 GCCTACCAGCGAATGCCAT 60.527 57.895 0.00 0.00 44.31 4.40
297 298 2.182842 CAGCCTACCAGCGAATGCC 61.183 63.158 0.00 0.00 44.31 4.40
298 299 2.182842 CCAGCCTACCAGCGAATGC 61.183 63.158 0.00 0.00 43.24 3.56
301 302 2.214216 ACACCAGCCTACCAGCGAA 61.214 57.895 0.00 0.00 38.01 4.70
302 303 2.603473 ACACCAGCCTACCAGCGA 60.603 61.111 0.00 0.00 38.01 4.93
303 304 2.434884 CACACCAGCCTACCAGCG 60.435 66.667 0.00 0.00 38.01 5.18
304 305 2.045926 CCACACCAGCCTACCAGC 60.046 66.667 0.00 0.00 0.00 4.85
305 306 1.003355 CACCACACCAGCCTACCAG 60.003 63.158 0.00 0.00 0.00 4.00
306 307 0.840288 ATCACCACACCAGCCTACCA 60.840 55.000 0.00 0.00 0.00 3.25
307 308 0.328258 AATCACCACACCAGCCTACC 59.672 55.000 0.00 0.00 0.00 3.18
308 309 2.200373 AAATCACCACACCAGCCTAC 57.800 50.000 0.00 0.00 0.00 3.18
309 310 2.969821 AAAATCACCACACCAGCCTA 57.030 45.000 0.00 0.00 0.00 3.93
310 311 1.963515 GAAAAATCACCACACCAGCCT 59.036 47.619 0.00 0.00 0.00 4.58
311 312 1.963515 AGAAAAATCACCACACCAGCC 59.036 47.619 0.00 0.00 0.00 4.85
312 313 3.733443 AAGAAAAATCACCACACCAGC 57.267 42.857 0.00 0.00 0.00 4.85
377 378 1.975680 AGTCCTTGCCTCCGTCTAAAA 59.024 47.619 0.00 0.00 0.00 1.52
378 379 1.640917 AGTCCTTGCCTCCGTCTAAA 58.359 50.000 0.00 0.00 0.00 1.85
379 380 1.640917 AAGTCCTTGCCTCCGTCTAA 58.359 50.000 0.00 0.00 0.00 2.10
380 381 1.640917 AAAGTCCTTGCCTCCGTCTA 58.359 50.000 0.00 0.00 0.00 2.59
381 382 1.275573 GTAAAGTCCTTGCCTCCGTCT 59.724 52.381 0.00 0.00 0.00 4.18
382 383 1.723220 GTAAAGTCCTTGCCTCCGTC 58.277 55.000 0.00 0.00 0.00 4.79
384 385 0.037605 ACGTAAAGTCCTTGCCTCCG 60.038 55.000 0.00 0.00 0.00 4.63
385 386 2.180432 AACGTAAAGTCCTTGCCTCC 57.820 50.000 0.00 0.00 0.00 4.30
408 409 4.037208 TGGGGCGTCACGTTTTTATTTAAA 59.963 37.500 0.00 0.00 0.00 1.52
409 410 3.567164 TGGGGCGTCACGTTTTTATTTAA 59.433 39.130 0.00 0.00 0.00 1.52
410 411 3.144506 TGGGGCGTCACGTTTTTATTTA 58.855 40.909 0.00 0.00 0.00 1.40
411 412 1.955080 TGGGGCGTCACGTTTTTATTT 59.045 42.857 0.00 0.00 0.00 1.40
412 413 1.606903 TGGGGCGTCACGTTTTTATT 58.393 45.000 0.00 0.00 0.00 1.40
415 416 0.312729 GATTGGGGCGTCACGTTTTT 59.687 50.000 0.00 0.00 0.00 1.94
417 418 1.228003 TGATTGGGGCGTCACGTTT 60.228 52.632 0.00 0.00 0.00 3.60
418 419 1.964373 GTGATTGGGGCGTCACGTT 60.964 57.895 0.00 0.00 35.85 3.99
421 422 0.249398 ACTAGTGATTGGGGCGTCAC 59.751 55.000 0.00 0.00 43.85 3.67
423 424 2.547826 GTTACTAGTGATTGGGGCGTC 58.452 52.381 5.39 0.00 0.00 5.19
424 425 1.134907 CGTTACTAGTGATTGGGGCGT 60.135 52.381 5.39 0.00 0.00 5.68
425 426 1.134907 ACGTTACTAGTGATTGGGGCG 60.135 52.381 5.39 0.00 0.00 6.13
426 427 2.277084 CACGTTACTAGTGATTGGGGC 58.723 52.381 5.39 0.00 41.83 5.80
427 428 3.056393 TGACACGTTACTAGTGATTGGGG 60.056 47.826 5.39 0.00 41.83 4.96
428 429 4.182693 TGACACGTTACTAGTGATTGGG 57.817 45.455 5.39 0.00 41.83 4.12
429 430 5.454554 CGTATGACACGTTACTAGTGATTGG 59.545 44.000 5.39 0.00 45.82 3.16
488 993 5.644636 CCCCAACAAAATCATGAGAAAATGG 59.355 40.000 0.09 5.50 0.00 3.16
517 1022 3.431415 GGGCAGGAATAAAACCTTCTGT 58.569 45.455 0.00 0.00 35.35 3.41
518 1023 2.760650 GGGGCAGGAATAAAACCTTCTG 59.239 50.000 0.00 0.00 35.35 3.02
519 1024 2.381961 TGGGGCAGGAATAAAACCTTCT 59.618 45.455 0.00 0.00 35.35 2.85
520 1025 2.815158 TGGGGCAGGAATAAAACCTTC 58.185 47.619 0.00 0.00 35.35 3.46
546 1056 0.171231 CGAGTCGGTTCATCAGCTCA 59.829 55.000 4.10 0.00 0.00 4.26
638 1148 3.999663 GGATCGATGGATTGGATTGAGTC 59.000 47.826 0.54 0.00 31.51 3.36
643 1153 1.611673 GCGGGATCGATGGATTGGATT 60.612 52.381 0.54 0.00 39.00 3.01
674 1185 1.043673 CGGGGAAGAGGAGGGTACTG 61.044 65.000 0.00 0.00 0.00 2.74
675 1186 1.219824 TCGGGGAAGAGGAGGGTACT 61.220 60.000 0.00 0.00 0.00 2.73
678 1193 2.039137 GTCGGGGAAGAGGAGGGT 59.961 66.667 0.00 0.00 0.00 4.34
688 1209 2.961893 CGGATTGGTTGGTCGGGGA 61.962 63.158 0.00 0.00 0.00 4.81
697 1218 2.624169 CGTTGGACACGGATTGGTT 58.376 52.632 0.00 0.00 45.89 3.67
765 1301 3.787001 CTCAAGGGGTCGGGGAGC 61.787 72.222 0.00 0.00 0.00 4.70
769 1305 1.918800 AGGAACTCAAGGGGTCGGG 60.919 63.158 0.00 0.00 0.00 5.14
919 1461 6.038997 TCGAACCCCAAAAGAAAAGAAAAA 57.961 33.333 0.00 0.00 0.00 1.94
920 1462 5.662674 TCGAACCCCAAAAGAAAAGAAAA 57.337 34.783 0.00 0.00 0.00 2.29
921 1463 5.662674 TTCGAACCCCAAAAGAAAAGAAA 57.337 34.783 0.00 0.00 0.00 2.52
922 1464 5.862678 ATTCGAACCCCAAAAGAAAAGAA 57.137 34.783 0.00 0.00 0.00 2.52
923 1465 5.361285 TGAATTCGAACCCCAAAAGAAAAGA 59.639 36.000 0.00 0.00 0.00 2.52
924 1466 5.596845 TGAATTCGAACCCCAAAAGAAAAG 58.403 37.500 0.00 0.00 0.00 2.27
988 1530 2.750948 GATTAATTCACCTAGGCGCGA 58.249 47.619 12.10 0.00 0.00 5.87
1005 1547 2.332654 GCCGCCTTGGTTGTCGATT 61.333 57.895 0.00 0.00 41.21 3.34
1130 1672 1.475034 GGATAGATGGTTGCCTGCGAA 60.475 52.381 0.00 0.00 0.00 4.70
1142 1684 5.250082 TGAATGAAGGAGGGATGGATAGATG 59.750 44.000 0.00 0.00 0.00 2.90
1146 1688 5.612261 TGAATGAATGAAGGAGGGATGGATA 59.388 40.000 0.00 0.00 0.00 2.59
1151 1693 5.068636 CGAATGAATGAATGAAGGAGGGAT 58.931 41.667 0.00 0.00 0.00 3.85
1154 1696 5.824904 AACGAATGAATGAATGAAGGAGG 57.175 39.130 0.00 0.00 0.00 4.30
1156 1698 7.452880 AGAAAACGAATGAATGAATGAAGGA 57.547 32.000 0.00 0.00 0.00 3.36
1158 1700 7.007725 CGGAAGAAAACGAATGAATGAATGAAG 59.992 37.037 0.00 0.00 0.00 3.02
1160 1702 6.314018 CGGAAGAAAACGAATGAATGAATGA 58.686 36.000 0.00 0.00 0.00 2.57
1164 1706 4.069304 ACCGGAAGAAAACGAATGAATGA 58.931 39.130 9.46 0.00 0.00 2.57
1168 1710 1.533731 GCACCGGAAGAAAACGAATGA 59.466 47.619 9.46 0.00 0.00 2.57
1184 1726 1.961793 TACTGGTCTTGTTGTGCACC 58.038 50.000 15.69 0.00 0.00 5.01
1196 1738 5.596845 TGCAAAAGGAAATTGTTACTGGTC 58.403 37.500 0.00 0.00 0.00 4.02
1271 1865 2.435120 TAGTCTCCTGGTCACCGCCA 62.435 60.000 0.00 0.00 36.97 5.69
1273 1867 0.606604 TTTAGTCTCCTGGTCACCGC 59.393 55.000 0.00 0.00 0.00 5.68
1288 1882 3.390135 TCTTGAGGCGTTGTGAGTTTAG 58.610 45.455 0.00 0.00 0.00 1.85
1343 1937 1.416813 CGATCTCAAGCTGCACGGAC 61.417 60.000 1.02 0.00 0.00 4.79
1376 1970 2.340731 TGTTTAGCCCCTCCAAGTGTA 58.659 47.619 0.00 0.00 0.00 2.90
1436 2030 0.752009 TCTTATCCTCGGCGTCAGCT 60.752 55.000 6.85 0.00 44.37 4.24
1442 2036 3.066900 TCTTCTTCTTCTTATCCTCGGCG 59.933 47.826 0.00 0.00 0.00 6.46
1637 2234 1.341285 ACCAGCATTGCCAGCATCTTA 60.341 47.619 4.70 0.00 0.00 2.10
1865 2462 4.716784 TGTAACATCAGGAGGCAGAGTAAT 59.283 41.667 0.00 0.00 0.00 1.89
1929 2526 1.003545 CTTGTGAAACGGTGTCAGCAG 60.004 52.381 0.07 0.00 42.39 4.24
1977 2574 0.615331 CTGCTAGAAGTTCCAGGGCA 59.385 55.000 0.00 4.63 0.00 5.36
2022 2619 1.821136 GGAAGCTTCCATGGTTTCCTG 59.179 52.381 35.71 7.84 46.76 3.86
2195 2792 1.497991 TGTTTTTCCGCTCGTCTGAG 58.502 50.000 0.00 0.00 45.49 3.35
2273 2870 7.013083 CCATCCAATAATGACTCCTTCTTTGAG 59.987 40.741 0.00 0.00 35.92 3.02
2335 2932 7.680442 TGTGCATAGAATAACACTAAAGCAA 57.320 32.000 0.00 0.00 37.02 3.91
2336 2933 7.201723 CCATGTGCATAGAATAACACTAAAGCA 60.202 37.037 0.00 0.00 34.09 3.91
2422 3019 3.079578 ACTGCAGAAACCAGACATGATG 58.920 45.455 23.35 0.00 34.47 3.07
2504 3143 8.652290 GGTAACCCATCAGAATCTTCTATTACT 58.348 37.037 0.00 0.00 35.34 2.24
2515 3154 3.456277 GACTGGAGGTAACCCATCAGAAT 59.544 47.826 11.91 0.00 36.50 2.40
2849 3488 1.137086 TCGCTGTATCTCTTGCCCTTC 59.863 52.381 0.00 0.00 0.00 3.46
2867 3506 5.063186 CCAAGAAACATCACTCTCAGAATCG 59.937 44.000 0.00 0.00 0.00 3.34
2919 3558 0.936297 CACTTTTGTGCAGGCTTCGC 60.936 55.000 0.00 0.00 44.07 4.70
2942 3581 3.585748 ACAACACGTGAAATCAAGTCG 57.414 42.857 25.01 0.20 36.46 4.18
3236 3877 6.174720 ACAGTAATTGGAACAGAGAACTCA 57.825 37.500 4.64 0.00 42.39 3.41
3485 4126 3.676646 CGTAAAGGGAGTTTCTGTTACCG 59.323 47.826 0.00 0.00 0.00 4.02
3518 4159 9.828691 TCAGGATGATTACATATCTTCCTTAGA 57.171 33.333 15.61 10.48 45.08 2.10
3592 4233 7.137426 CACTTTCATCTTTCCACTTCTTTCAG 58.863 38.462 0.00 0.00 0.00 3.02
3629 4270 5.124617 GCCTTGATCTTTCCAGACTTTAAGG 59.875 44.000 0.00 0.00 35.31 2.69
3716 4357 1.779569 GATATTGGTAGTCACGGGCG 58.220 55.000 0.00 0.00 0.00 6.13
3722 4363 4.581409 TCCATTCGTCGATATTGGTAGTCA 59.419 41.667 15.13 0.00 0.00 3.41
3932 4573 2.640316 AGACAGGGTGGACAAAACTC 57.360 50.000 0.00 0.00 0.00 3.01
3934 4575 6.884836 AGAATTATAGACAGGGTGGACAAAAC 59.115 38.462 0.00 0.00 0.00 2.43
3940 4581 4.037222 TGCAGAATTATAGACAGGGTGGA 58.963 43.478 0.00 0.00 0.00 4.02
3942 4583 4.130118 GGTGCAGAATTATAGACAGGGTG 58.870 47.826 0.00 0.00 0.00 4.61
3943 4584 4.040755 AGGTGCAGAATTATAGACAGGGT 58.959 43.478 0.00 0.00 0.00 4.34
3950 4591 7.933577 TGAAAGATGGTAGGTGCAGAATTATAG 59.066 37.037 0.00 0.00 0.00 1.31
3970 4611 4.265904 TGCATCTACGAAGGTTGAAAGA 57.734 40.909 0.00 0.00 31.84 2.52
3975 4616 2.223340 GCCAATGCATCTACGAAGGTTG 60.223 50.000 0.00 0.00 37.47 3.77
4038 4679 5.560722 TGTCAACCATCTCTTCCAAGTTA 57.439 39.130 0.00 0.00 0.00 2.24
4039 4680 4.437682 TGTCAACCATCTCTTCCAAGTT 57.562 40.909 0.00 0.00 0.00 2.66
4068 4709 3.181472 TGTCATCACTCATCGGAATCCAG 60.181 47.826 0.00 0.00 0.00 3.86
4074 4715 2.110578 ACCATGTCATCACTCATCGGA 58.889 47.619 0.00 0.00 0.00 4.55
4115 4756 3.036819 TGCTGCTATCTCAACAGAGGAT 58.963 45.455 0.00 0.00 33.10 3.24
4194 4835 1.351017 CTGGCCTAGTCCACCAAAAGA 59.649 52.381 3.32 0.00 31.81 2.52
4199 4840 2.285368 CCCTGGCCTAGTCCACCA 60.285 66.667 3.32 0.00 31.74 4.17
4248 4889 4.055360 TGATCAACCTGTAAACTGTCACG 58.945 43.478 0.00 0.00 0.00 4.35
4296 4937 6.399639 TGCTTGTATATCTGTCGATGGTAA 57.600 37.500 0.00 0.00 0.00 2.85
4377 5018 7.760794 TGCAATGTGAATAAATCTTTCATGTCC 59.239 33.333 0.00 0.00 35.68 4.02
4527 5168 0.035725 CAGATGGTTCAGCCTCTGCA 60.036 55.000 0.00 0.00 41.13 4.41
4723 5373 7.488150 GCACTCATTATGGCATCATGATTTATG 59.512 37.037 21.17 17.30 38.17 1.90
4956 5606 0.401356 TGAACCTTCTGATGGCTGCA 59.599 50.000 9.34 3.18 0.00 4.41
4984 5634 0.595095 GACTTTGAACCCTGCTGCTG 59.405 55.000 0.00 0.00 0.00 4.41
4985 5635 0.475906 AGACTTTGAACCCTGCTGCT 59.524 50.000 0.00 0.00 0.00 4.24
4986 5636 1.268079 GAAGACTTTGAACCCTGCTGC 59.732 52.381 0.00 0.00 0.00 5.25
5131 5781 0.318441 CTGTCGAGCCTGGTCTTTGA 59.682 55.000 0.00 0.00 0.00 2.69
5134 5784 0.251386 TCTCTGTCGAGCCTGGTCTT 60.251 55.000 0.00 0.00 37.19 3.01
5174 5824 4.813161 CACGATCATGTTCCTGCTAGAATT 59.187 41.667 0.00 0.00 0.00 2.17
5175 5825 4.375272 CACGATCATGTTCCTGCTAGAAT 58.625 43.478 0.00 0.00 0.00 2.40
5501 6152 8.443176 TCAGCCATATCCAAAGATTTAAGAGAT 58.557 33.333 0.00 0.00 33.67 2.75
5591 6251 4.730966 TGCAAACCACTAATTAACTGGGA 58.269 39.130 11.75 0.00 0.00 4.37
5639 6303 2.039746 CCCAGGAAACATGTACACCAGA 59.960 50.000 0.00 0.00 0.00 3.86
5731 6396 6.929896 ACAGAACGACGCATACAAATATTAC 58.070 36.000 0.00 0.00 0.00 1.89
5768 6433 2.014128 CAAGAAAAGTGACCACACCGT 58.986 47.619 2.78 0.00 46.99 4.83
5822 6487 7.338703 AGCAATTGCATCTGGAGTAATATATGG 59.661 37.037 30.89 0.00 45.16 2.74
5886 6551 8.592809 AGCAGGGAAATAAATATTCACAACAAA 58.407 29.630 0.00 0.00 32.51 2.83
5906 6571 2.157738 CAGTGGAAAAAGAGAGCAGGG 58.842 52.381 0.00 0.00 0.00 4.45
5908 6573 4.392445 CAGATCAGTGGAAAAAGAGAGCAG 59.608 45.833 0.00 0.00 0.00 4.24
5909 6574 4.202398 ACAGATCAGTGGAAAAAGAGAGCA 60.202 41.667 0.00 0.00 0.00 4.26
5974 6642 3.146066 CACCGTCTTCCAAAAATCTGGA 58.854 45.455 0.00 0.00 43.99 3.86
5983 6651 3.948473 TCAAAATCAACACCGTCTTCCAA 59.052 39.130 0.00 0.00 0.00 3.53
5993 6661 6.414987 GTGTAGTTTCAGCTCAAAATCAACAC 59.585 38.462 1.72 1.72 0.00 3.32
5997 6665 6.728200 CAAGTGTAGTTTCAGCTCAAAATCA 58.272 36.000 0.00 0.00 0.00 2.57
6020 6688 5.790593 ACTTTCGTAATAAGAACCAGAGCA 58.209 37.500 0.00 0.00 0.00 4.26
6082 6750 9.885743 GCGAAAATAATTATTCACAACAATCAC 57.114 29.630 11.08 0.00 0.00 3.06
6158 6826 7.649306 CAGAAATCTGAAAAACGAAAATCCTGT 59.351 33.333 4.37 0.00 46.59 4.00
6214 6882 8.129211 GTGTTACTTCCATAATAAGAACCATGC 58.871 37.037 0.00 0.00 0.00 4.06
6383 7053 3.127548 CGAAAGTCCTGGGATGTCAATTG 59.872 47.826 0.00 0.00 0.00 2.32
6395 7087 4.002982 TGTGGATGAAATCGAAAGTCCTG 58.997 43.478 0.00 0.00 46.86 3.86
6402 7094 5.414144 TGTTATGCTTGTGGATGAAATCGAA 59.586 36.000 0.00 0.00 46.86 3.71
6404 7096 5.233957 TGTTATGCTTGTGGATGAAATCG 57.766 39.130 0.00 0.00 46.86 3.34
6405 7097 7.259882 TCAATGTTATGCTTGTGGATGAAATC 58.740 34.615 0.00 0.00 44.55 2.17
6406 7098 7.172868 TCAATGTTATGCTTGTGGATGAAAT 57.827 32.000 0.00 0.00 0.00 2.17
6422 7116 6.964908 TGTTTCGCTTCTCAATTCAATGTTA 58.035 32.000 0.00 0.00 0.00 2.41
6433 7127 4.071423 TGGAATGAATGTTTCGCTTCTCA 58.929 39.130 0.00 0.00 0.00 3.27
6446 7140 7.447594 AGAAATGTTTTGCTTCTGGAATGAAT 58.552 30.769 0.00 0.00 0.00 2.57
6467 7161 2.419990 CCGTGATGCAGACCCATAGAAA 60.420 50.000 0.00 0.00 0.00 2.52
6494 7188 1.141858 AGGGGATCATTTCGGCTTCTC 59.858 52.381 0.00 0.00 0.00 2.87
6498 7192 1.141858 GAGAAGGGGATCATTTCGGCT 59.858 52.381 0.00 0.00 0.00 5.52
6533 7229 6.480763 TCTTCCTCACACAGCCATAAAAATA 58.519 36.000 0.00 0.00 0.00 1.40
6535 7231 4.724399 TCTTCCTCACACAGCCATAAAAA 58.276 39.130 0.00 0.00 0.00 1.94
6599 7295 5.047188 CGTTTAGTTTGTTTCCCAGCATTT 58.953 37.500 0.00 0.00 0.00 2.32
6625 7321 3.836562 ACGGAGGGAGTACATGTTTTAGT 59.163 43.478 2.30 0.00 0.00 2.24
6628 7324 2.027469 GGACGGAGGGAGTACATGTTTT 60.027 50.000 2.30 0.00 0.00 2.43
6639 7337 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
6641 7339 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
6642 7340 2.667473 ACAAGTATTTCCGGACGGAG 57.333 50.000 13.64 3.15 46.06 4.63
6644 7342 2.419667 ACAACAAGTATTTCCGGACGG 58.580 47.619 1.83 3.96 0.00 4.79
6645 7343 4.487948 TCTACAACAAGTATTTCCGGACG 58.512 43.478 1.83 0.00 30.93 4.79
6646 7344 6.790285 TTTCTACAACAAGTATTTCCGGAC 57.210 37.500 1.83 0.00 30.93 4.79
6647 7345 6.373216 CCATTTCTACAACAAGTATTTCCGGA 59.627 38.462 0.00 0.00 30.93 5.14
6648 7346 6.373216 TCCATTTCTACAACAAGTATTTCCGG 59.627 38.462 0.00 0.00 30.93 5.14
6649 7347 7.372451 TCCATTTCTACAACAAGTATTTCCG 57.628 36.000 0.00 0.00 30.93 4.30
6702 7400 8.952278 GTCCGAGAAATAGATGTATCTAGATGT 58.048 37.037 15.79 1.25 42.20 3.06
6703 7401 8.951243 TGTCCGAGAAATAGATGTATCTAGATG 58.049 37.037 15.79 0.00 42.20 2.90
6704 7402 9.521841 TTGTCCGAGAAATAGATGTATCTAGAT 57.478 33.333 10.73 10.73 42.20 1.98
6705 7403 8.919777 TTGTCCGAGAAATAGATGTATCTAGA 57.080 34.615 7.57 0.00 42.20 2.43
6706 7404 8.788806 ACTTGTCCGAGAAATAGATGTATCTAG 58.211 37.037 7.57 0.00 42.20 2.43
6707 7405 8.693120 ACTTGTCCGAGAAATAGATGTATCTA 57.307 34.615 4.22 4.22 43.00 1.98
6708 7406 7.589958 ACTTGTCCGAGAAATAGATGTATCT 57.410 36.000 0.00 0.00 40.86 1.98
6709 7407 9.915629 AATACTTGTCCGAGAAATAGATGTATC 57.084 33.333 0.00 0.00 0.00 2.24
6712 7410 9.099454 GAAAATACTTGTCCGAGAAATAGATGT 57.901 33.333 0.00 0.00 0.00 3.06
6713 7411 8.269424 CGAAAATACTTGTCCGAGAAATAGATG 58.731 37.037 0.00 0.00 0.00 2.90
6714 7412 7.438459 CCGAAAATACTTGTCCGAGAAATAGAT 59.562 37.037 0.00 0.00 0.00 1.98
6715 7413 6.755141 CCGAAAATACTTGTCCGAGAAATAGA 59.245 38.462 0.00 0.00 0.00 1.98
6716 7414 6.755141 TCCGAAAATACTTGTCCGAGAAATAG 59.245 38.462 0.00 0.00 0.00 1.73
6717 7415 6.532657 GTCCGAAAATACTTGTCCGAGAAATA 59.467 38.462 0.00 0.00 0.00 1.40
6718 7416 5.350640 GTCCGAAAATACTTGTCCGAGAAAT 59.649 40.000 0.00 0.00 0.00 2.17
6719 7417 4.687483 GTCCGAAAATACTTGTCCGAGAAA 59.313 41.667 0.00 0.00 0.00 2.52
6720 7418 4.240096 GTCCGAAAATACTTGTCCGAGAA 58.760 43.478 0.00 0.00 0.00 2.87
6721 7419 3.367703 GGTCCGAAAATACTTGTCCGAGA 60.368 47.826 0.00 0.00 0.00 4.04
6722 7420 2.928116 GGTCCGAAAATACTTGTCCGAG 59.072 50.000 0.00 0.00 0.00 4.63
6723 7421 2.671914 CGGTCCGAAAATACTTGTCCGA 60.672 50.000 4.91 0.00 38.03 4.55
6724 7422 1.657094 CGGTCCGAAAATACTTGTCCG 59.343 52.381 4.91 0.00 0.00 4.79
6725 7423 2.928116 CTCGGTCCGAAAATACTTGTCC 59.072 50.000 16.23 0.00 34.74 4.02
6726 7424 2.928116 CCTCGGTCCGAAAATACTTGTC 59.072 50.000 16.23 0.00 34.74 3.18
6727 7425 2.354403 CCCTCGGTCCGAAAATACTTGT 60.354 50.000 16.23 0.00 34.74 3.16
6728 7426 2.093869 TCCCTCGGTCCGAAAATACTTG 60.094 50.000 16.23 0.47 34.74 3.16
6729 7427 2.167900 CTCCCTCGGTCCGAAAATACTT 59.832 50.000 16.23 0.00 34.74 2.24
6730 7428 1.755380 CTCCCTCGGTCCGAAAATACT 59.245 52.381 16.23 0.00 34.74 2.12
6731 7429 1.479730 ACTCCCTCGGTCCGAAAATAC 59.520 52.381 16.23 0.00 34.74 1.89
6732 7430 1.856629 ACTCCCTCGGTCCGAAAATA 58.143 50.000 16.23 0.42 34.74 1.40
6733 7431 1.479730 GTACTCCCTCGGTCCGAAAAT 59.520 52.381 16.23 2.15 34.74 1.82
6734 7432 0.890683 GTACTCCCTCGGTCCGAAAA 59.109 55.000 16.23 2.66 34.74 2.29
6735 7433 0.251297 TGTACTCCCTCGGTCCGAAA 60.251 55.000 16.23 3.03 34.74 3.46
6736 7434 0.962356 GTGTACTCCCTCGGTCCGAA 60.962 60.000 16.23 0.00 34.74 4.30
6737 7435 1.377725 GTGTACTCCCTCGGTCCGA 60.378 63.158 14.54 14.54 0.00 4.55
6738 7436 1.035932 ATGTGTACTCCCTCGGTCCG 61.036 60.000 4.39 4.39 0.00 4.79
6739 7437 1.134788 CAATGTGTACTCCCTCGGTCC 60.135 57.143 0.00 0.00 0.00 4.46
6740 7438 1.134788 CCAATGTGTACTCCCTCGGTC 60.135 57.143 0.00 0.00 0.00 4.79
6741 7439 0.902531 CCAATGTGTACTCCCTCGGT 59.097 55.000 0.00 0.00 0.00 4.69
6742 7440 0.462047 GCCAATGTGTACTCCCTCGG 60.462 60.000 0.00 0.00 0.00 4.63
6743 7441 0.249120 TGCCAATGTGTACTCCCTCG 59.751 55.000 0.00 0.00 0.00 4.63
6744 7442 2.359900 CTTGCCAATGTGTACTCCCTC 58.640 52.381 0.00 0.00 0.00 4.30
6745 7443 1.004745 CCTTGCCAATGTGTACTCCCT 59.995 52.381 0.00 0.00 0.00 4.20
6746 7444 1.463674 CCTTGCCAATGTGTACTCCC 58.536 55.000 0.00 0.00 0.00 4.30
6747 7445 1.271926 ACCCTTGCCAATGTGTACTCC 60.272 52.381 0.00 0.00 0.00 3.85
6748 7446 1.812571 CACCCTTGCCAATGTGTACTC 59.187 52.381 0.00 0.00 0.00 2.59
6749 7447 1.144913 ACACCCTTGCCAATGTGTACT 59.855 47.619 10.18 0.00 39.98 2.73
6750 7448 1.616159 ACACCCTTGCCAATGTGTAC 58.384 50.000 10.18 0.00 39.98 2.90
6751 7449 2.373335 AACACCCTTGCCAATGTGTA 57.627 45.000 11.76 0.00 40.83 2.90
6752 7450 1.960689 GTAACACCCTTGCCAATGTGT 59.039 47.619 6.97 6.97 43.36 3.72
6753 7451 2.238521 AGTAACACCCTTGCCAATGTG 58.761 47.619 5.88 5.88 34.92 3.21
6754 7452 2.675658 AGTAACACCCTTGCCAATGT 57.324 45.000 0.00 0.00 0.00 2.71
6755 7453 5.461032 TTTAAGTAACACCCTTGCCAATG 57.539 39.130 0.00 0.00 0.00 2.82
6756 7454 5.508320 CGTTTTAAGTAACACCCTTGCCAAT 60.508 40.000 0.00 0.00 0.00 3.16
6757 7455 4.202030 CGTTTTAAGTAACACCCTTGCCAA 60.202 41.667 0.00 0.00 0.00 4.52
6758 7456 3.315749 CGTTTTAAGTAACACCCTTGCCA 59.684 43.478 0.00 0.00 0.00 4.92
6759 7457 3.316029 ACGTTTTAAGTAACACCCTTGCC 59.684 43.478 0.00 0.00 0.00 4.52
6942 7682 4.520874 TGTTTTTGCAATGGATCTCGGTAA 59.479 37.500 0.00 0.00 0.00 2.85
7078 7819 6.407202 AGCTACCTTTCATTCTTTACGTGAT 58.593 36.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.