Multiple sequence alignment - TraesCS3B01G096900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G096900 chr3B 100.000 5588 0 0 1 5588 64695080 64700667 0.000000e+00 10320.0
1 TraesCS3B01G096900 chr3B 91.852 135 9 2 5301 5434 426998857 426998990 2.660000e-43 187.0
2 TraesCS3B01G096900 chr3D 91.687 2803 180 18 2397 5170 41667744 41670522 0.000000e+00 3836.0
3 TraesCS3B01G096900 chr3D 91.802 1415 99 10 856 2263 41666277 41667681 0.000000e+00 1954.0
4 TraesCS3B01G096900 chr3D 87.115 357 30 6 372 714 41665478 41665832 1.890000e-104 390.0
5 TraesCS3B01G096900 chr3D 83.730 252 35 4 121 371 41129757 41130003 3.370000e-57 233.0
6 TraesCS3B01G096900 chr3D 94.915 118 6 0 5301 5418 337959509 337959626 9.560000e-43 185.0
7 TraesCS3B01G096900 chr3D 93.443 122 7 1 5300 5420 607000655 607000534 4.450000e-41 180.0
8 TraesCS3B01G096900 chr3D 77.632 304 50 13 4283 4573 41123153 41123451 9.630000e-38 169.0
9 TraesCS3B01G096900 chr3A 91.622 2781 195 22 2396 5144 53179093 53181867 0.000000e+00 3810.0
10 TraesCS3B01G096900 chr3A 91.659 2266 156 14 2397 4640 53036933 53039187 0.000000e+00 3107.0
11 TraesCS3B01G096900 chr3A 90.959 1471 111 14 905 2368 53177644 53179099 0.000000e+00 1960.0
12 TraesCS3B01G096900 chr3A 86.205 1544 163 25 856 2377 53035429 53036944 0.000000e+00 1626.0
13 TraesCS3B01G096900 chr3A 77.647 2125 384 69 2506 4573 53031338 53033428 0.000000e+00 1208.0
14 TraesCS3B01G096900 chr3A 89.024 492 29 3 4820 5303 53039317 53039791 2.240000e-163 586.0
15 TraesCS3B01G096900 chr3A 87.154 506 38 7 368 860 53034913 53035404 2.940000e-152 549.0
16 TraesCS3B01G096900 chr3A 79.398 631 116 6 1225 1854 53029878 53030495 3.090000e-117 433.0
17 TraesCS3B01G096900 chr3A 93.023 172 11 1 5415 5585 53039788 53039959 3.340000e-62 250.0
18 TraesCS3B01G096900 chr3A 92.486 173 11 2 5415 5585 53181984 53182156 4.320000e-61 246.0
19 TraesCS3B01G096900 chr3A 97.080 137 4 0 5167 5303 53181851 53181987 1.210000e-56 231.0
20 TraesCS3B01G096900 chr3A 84.058 207 26 6 121 323 53034688 53034891 5.710000e-45 193.0
21 TraesCS3B01G096900 chr6D 95.798 119 5 0 5299 5417 348647336 348647454 5.710000e-45 193.0
22 TraesCS3B01G096900 chr2D 94.118 119 7 0 5300 5418 119065855 119065973 1.240000e-41 182.0
23 TraesCS3B01G096900 chr1A 93.496 123 6 2 5298 5419 86576672 86576551 1.240000e-41 182.0
24 TraesCS3B01G096900 chr4D 93.443 122 7 1 5296 5417 367722226 367722346 4.450000e-41 180.0
25 TraesCS3B01G096900 chr2B 90.840 131 10 2 5301 5431 349929132 349929004 2.070000e-39 174.0
26 TraesCS3B01G096900 chr6B 88.112 143 15 2 5301 5443 325033151 325033291 9.630000e-38 169.0
27 TraesCS3B01G096900 chrUn 79.612 103 18 3 3158 3257 88582097 88581995 2.790000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G096900 chr3B 64695080 64700667 5587 False 10320.00 10320 100.000000 1 5588 1 chr3B.!!$F1 5587
1 TraesCS3B01G096900 chr3D 41665478 41670522 5044 False 2060.00 3836 90.201333 372 5170 3 chr3D.!!$F4 4798
2 TraesCS3B01G096900 chr3A 53177644 53182156 4512 False 1561.75 3810 93.036750 905 5585 4 chr3A.!!$F2 4680
3 TraesCS3B01G096900 chr3A 53029878 53039959 10081 False 994.00 3107 86.021000 121 5585 8 chr3A.!!$F1 5464

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 5389 0.034198 TTTCGTCGACATCAGCCCAA 59.966 50.0 17.16 0.0 0.00 4.12 F
775 5770 0.179004 AACGGGCAACTTCCATGTGA 60.179 50.0 0.00 0.0 0.00 3.58 F
1098 6131 0.249911 AGGGTGTGAAGCAAGACGTC 60.250 55.0 7.70 7.7 0.00 4.34 F
2824 7876 0.251608 GCTAAAGCCACTTTCCCCCA 60.252 55.0 0.00 0.0 35.21 4.96 F
3716 8774 0.179020 TTGCAGACACTGGACTTGGG 60.179 55.0 0.00 0.0 30.08 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 6654 0.032540 CAGCTGTTTTGCCAAGTCCC 59.967 55.000 5.25 0.0 0.00 4.46 R
2773 7825 0.602905 CCGGACTTTCTGGCGACTTT 60.603 55.000 0.00 0.0 35.89 2.66 R
2978 8030 5.094387 AGACCTTAGACCAATCCTCTTTCA 58.906 41.667 0.00 0.0 0.00 2.69 R
3859 8923 0.034059 AACTCAGGAGACCAAGTGCG 59.966 55.000 2.79 0.0 0.00 5.34 R
5394 10515 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.301577 CAAAAGTTTGTTTGCGGGGA 57.698 45.000 0.00 0.00 32.10 4.81
42 43 2.832563 CAAAAGTTTGTTTGCGGGGAT 58.167 42.857 0.00 0.00 32.10 3.85
43 44 3.983741 CAAAAGTTTGTTTGCGGGGATA 58.016 40.909 0.00 0.00 32.10 2.59
44 45 4.372656 CAAAAGTTTGTTTGCGGGGATAA 58.627 39.130 0.00 0.00 32.10 1.75
47 48 4.882842 AGTTTGTTTGCGGGGATAATTT 57.117 36.364 0.00 0.00 0.00 1.82
48 49 5.986501 AGTTTGTTTGCGGGGATAATTTA 57.013 34.783 0.00 0.00 0.00 1.40
49 50 5.716094 AGTTTGTTTGCGGGGATAATTTAC 58.284 37.500 0.00 0.00 0.00 2.01
51 52 4.974368 TGTTTGCGGGGATAATTTACAG 57.026 40.909 0.00 0.00 0.00 2.74
52 53 4.590918 TGTTTGCGGGGATAATTTACAGA 58.409 39.130 0.00 0.00 0.00 3.41
53 54 5.010933 TGTTTGCGGGGATAATTTACAGAA 58.989 37.500 0.00 0.00 0.00 3.02
54 55 5.654650 TGTTTGCGGGGATAATTTACAGAAT 59.345 36.000 0.00 0.00 0.00 2.40
56 57 7.504238 TGTTTGCGGGGATAATTTACAGAATAT 59.496 33.333 0.00 0.00 0.00 1.28
57 58 8.357402 GTTTGCGGGGATAATTTACAGAATATT 58.643 33.333 0.00 0.00 0.00 1.28
59 60 7.881142 TGCGGGGATAATTTACAGAATATTTG 58.119 34.615 0.00 0.00 0.00 2.32
60 61 6.806739 GCGGGGATAATTTACAGAATATTTGC 59.193 38.462 0.00 0.00 0.00 3.68
62 63 8.522830 CGGGGATAATTTACAGAATATTTGCAT 58.477 33.333 0.00 0.00 0.00 3.96
63 64 9.643693 GGGGATAATTTACAGAATATTTGCATG 57.356 33.333 0.00 0.00 0.00 4.06
64 65 9.143631 GGGATAATTTACAGAATATTTGCATGC 57.856 33.333 11.82 11.82 0.00 4.06
65 66 9.143631 GGATAATTTACAGAATATTTGCATGCC 57.856 33.333 16.68 0.00 0.00 4.40
66 67 9.143631 GATAATTTACAGAATATTTGCATGCCC 57.856 33.333 16.68 0.00 0.00 5.36
67 68 6.736110 ATTTACAGAATATTTGCATGCCCT 57.264 33.333 16.68 1.84 0.00 5.19
68 69 5.772825 TTACAGAATATTTGCATGCCCTC 57.227 39.130 16.68 2.62 0.00 4.30
69 70 3.907221 ACAGAATATTTGCATGCCCTCT 58.093 40.909 16.68 4.95 0.00 3.69
73 74 5.766670 CAGAATATTTGCATGCCCTCTAAGA 59.233 40.000 16.68 0.00 0.00 2.10
74 75 6.433404 CAGAATATTTGCATGCCCTCTAAGAT 59.567 38.462 16.68 1.96 0.00 2.40
76 77 3.650281 TTTGCATGCCCTCTAAGATGA 57.350 42.857 16.68 0.00 0.00 2.92
78 79 3.413846 TGCATGCCCTCTAAGATGATC 57.586 47.619 16.68 0.00 0.00 2.92
79 80 2.977580 TGCATGCCCTCTAAGATGATCT 59.022 45.455 16.68 0.00 0.00 2.75
80 81 4.162651 TGCATGCCCTCTAAGATGATCTA 58.837 43.478 16.68 0.00 0.00 1.98
81 82 4.781621 TGCATGCCCTCTAAGATGATCTAT 59.218 41.667 16.68 0.00 0.00 1.98
83 84 4.815533 TGCCCTCTAAGATGATCTATGC 57.184 45.455 0.00 0.00 0.00 3.14
84 85 4.162651 TGCCCTCTAAGATGATCTATGCA 58.837 43.478 0.00 0.00 0.00 3.96
85 86 4.781621 TGCCCTCTAAGATGATCTATGCAT 59.218 41.667 3.79 3.79 0.00 3.96
87 88 6.614496 TGCCCTCTAAGATGATCTATGCATAT 59.386 38.462 6.92 0.00 0.00 1.78
88 89 7.126879 TGCCCTCTAAGATGATCTATGCATATT 59.873 37.037 6.92 0.00 32.56 1.28
89 90 7.441760 GCCCTCTAAGATGATCTATGCATATTG 59.558 40.741 6.92 0.00 30.66 1.90
90 91 8.484575 CCCTCTAAGATGATCTATGCATATTGT 58.515 37.037 6.92 0.00 30.66 2.71
91 92 9.887629 CCTCTAAGATGATCTATGCATATTGTT 57.112 33.333 6.92 0.00 30.66 2.83
97 98 9.788889 AGATGATCTATGCATATTGTTTTCTCA 57.211 29.630 6.92 2.74 0.00 3.27
123 124 7.622893 ATTAGTTCTCTTCCTTTTGAGATGC 57.377 36.000 0.00 0.00 38.85 3.91
124 125 4.978099 AGTTCTCTTCCTTTTGAGATGCA 58.022 39.130 0.00 0.00 38.85 3.96
125 126 5.568392 AGTTCTCTTCCTTTTGAGATGCAT 58.432 37.500 0.00 0.00 38.85 3.96
128 129 7.336427 AGTTCTCTTCCTTTTGAGATGCATAAG 59.664 37.037 0.00 0.00 38.85 1.73
129 130 5.587844 TCTCTTCCTTTTGAGATGCATAAGC 59.412 40.000 0.00 0.00 35.15 3.09
150 4840 3.480470 CACATTTCTCACAACACCCTCT 58.520 45.455 0.00 0.00 0.00 3.69
154 4844 3.981071 TTCTCACAACACCCTCTATGG 57.019 47.619 0.00 0.00 0.00 2.74
173 4864 9.987272 CTCTATGGGAAAAGAAAACTCATTTTT 57.013 29.630 0.00 0.00 38.17 1.94
202 4893 6.399986 GCGGAATGTAAAAGAAAGTTCATTGC 60.400 38.462 0.00 0.00 32.95 3.56
214 4905 7.633789 AGAAAGTTCATTGCTCTCCCTAATTA 58.366 34.615 0.00 0.00 0.00 1.40
243 4934 3.055385 TGAGTTTAGGCTCAAGCGGTTAT 60.055 43.478 0.00 0.00 41.93 1.89
249 4943 1.312371 GCTCAAGCGGTTATGGCCAA 61.312 55.000 10.96 0.00 0.00 4.52
250 4944 0.451783 CTCAAGCGGTTATGGCCAAC 59.548 55.000 10.96 3.66 0.00 3.77
270 4964 4.058721 ACAATTTGGAAGTTGGTCAAGC 57.941 40.909 0.78 0.00 0.00 4.01
286 4980 4.361253 GCCACTGCTCTTTCGACA 57.639 55.556 0.00 0.00 33.53 4.35
287 4981 2.616969 GCCACTGCTCTTTCGACAA 58.383 52.632 0.00 0.00 33.53 3.18
330 5024 2.578495 CGTTACTTCACGCGTTAGACT 58.422 47.619 21.28 5.97 32.43 3.24
331 5025 3.736213 CGTTACTTCACGCGTTAGACTA 58.264 45.455 21.28 5.13 32.43 2.59
332 5026 3.536061 CGTTACTTCACGCGTTAGACTAC 59.464 47.826 21.28 14.48 32.43 2.73
335 5029 2.294233 ACTTCACGCGTTAGACTACCAA 59.706 45.455 21.28 0.00 0.00 3.67
336 5030 3.243501 ACTTCACGCGTTAGACTACCAAA 60.244 43.478 21.28 0.00 0.00 3.28
337 5031 2.937591 TCACGCGTTAGACTACCAAAG 58.062 47.619 10.22 0.00 0.00 2.77
338 5032 2.553602 TCACGCGTTAGACTACCAAAGA 59.446 45.455 10.22 0.00 0.00 2.52
340 5034 3.303495 CACGCGTTAGACTACCAAAGATG 59.697 47.826 10.22 0.00 0.00 2.90
365 5059 8.184192 TGGAAAATATGAAGAAAAATCTCGAGC 58.816 33.333 7.81 0.00 0.00 5.03
366 5060 7.374491 GGAAAATATGAAGAAAAATCTCGAGCG 59.626 37.037 7.81 0.00 0.00 5.03
367 5061 6.910536 AATATGAAGAAAAATCTCGAGCGT 57.089 33.333 7.81 0.00 0.00 5.07
368 5062 4.590400 ATGAAGAAAAATCTCGAGCGTG 57.410 40.909 7.81 0.00 0.00 5.34
369 5063 3.390135 TGAAGAAAAATCTCGAGCGTGT 58.610 40.909 7.81 0.00 0.00 4.49
370 5064 4.552355 TGAAGAAAAATCTCGAGCGTGTA 58.448 39.130 7.81 0.00 0.00 2.90
371 5065 5.168569 TGAAGAAAAATCTCGAGCGTGTAT 58.831 37.500 7.81 0.00 0.00 2.29
372 5066 5.288712 TGAAGAAAAATCTCGAGCGTGTATC 59.711 40.000 7.81 1.87 0.00 2.24
373 5067 4.113354 AGAAAAATCTCGAGCGTGTATCC 58.887 43.478 7.81 0.00 0.00 2.59
374 5068 3.802948 AAAATCTCGAGCGTGTATCCT 57.197 42.857 7.81 0.00 0.00 3.24
375 5069 3.802948 AAATCTCGAGCGTGTATCCTT 57.197 42.857 7.81 0.00 0.00 3.36
385 5079 3.961408 AGCGTGTATCCTTCCTCAATAGT 59.039 43.478 0.00 0.00 0.00 2.12
392 5086 5.983333 ATCCTTCCTCAATAGTCCAACAT 57.017 39.130 0.00 0.00 0.00 2.71
394 5088 6.884472 TCCTTCCTCAATAGTCCAACATTA 57.116 37.500 0.00 0.00 0.00 1.90
395 5089 7.451731 TCCTTCCTCAATAGTCCAACATTAT 57.548 36.000 0.00 0.00 0.00 1.28
406 5100 9.632638 AATAGTCCAACATTATATTGTGAGCTT 57.367 29.630 1.17 0.00 0.00 3.74
407 5101 7.944729 AGTCCAACATTATATTGTGAGCTTT 57.055 32.000 1.17 0.00 0.00 3.51
428 5122 1.821332 GCATTTCTGGCCGGAGAGG 60.821 63.158 15.42 13.70 44.97 3.69
452 5146 5.469760 GGCAAATTTTACATTGTTTCAGCCT 59.530 36.000 0.00 0.00 33.38 4.58
470 5164 2.167075 GCCTAGTGCTTAAACTACGGGA 59.833 50.000 0.00 0.00 36.87 5.14
515 5209 8.299570 ACAGTATTTTAGGTTTTCTTGCATCTG 58.700 33.333 0.00 0.00 0.00 2.90
560 5262 2.507407 TTTATCAGTCCCAAGGCCAC 57.493 50.000 5.01 0.00 0.00 5.01
573 5275 1.074775 GGCCACATCTGAACCCACA 59.925 57.895 0.00 0.00 0.00 4.17
574 5276 0.323725 GGCCACATCTGAACCCACAT 60.324 55.000 0.00 0.00 0.00 3.21
577 5279 1.615116 CCACATCTGAACCCACATGCT 60.615 52.381 0.00 0.00 0.00 3.79
634 5340 2.025981 AGCCATTCCACATCAGCTTGTA 60.026 45.455 0.00 0.00 0.00 2.41
658 5365 2.722487 CCGGCAGGACGTAGCTAG 59.278 66.667 0.00 0.00 41.02 3.42
667 5374 4.206609 GCAGGACGTAGCTAGTTTATTTCG 59.793 45.833 0.00 0.00 0.00 3.46
668 5375 5.338365 CAGGACGTAGCTAGTTTATTTCGT 58.662 41.667 0.00 0.00 0.00 3.85
676 5383 5.647589 AGCTAGTTTATTTCGTCGACATCA 58.352 37.500 17.16 0.00 0.00 3.07
682 5389 0.034198 TTTCGTCGACATCAGCCCAA 59.966 50.000 17.16 0.00 0.00 4.12
685 5392 1.080093 GTCGACATCAGCCCAACGA 60.080 57.895 11.55 0.00 0.00 3.85
687 5394 1.107945 TCGACATCAGCCCAACGATA 58.892 50.000 0.00 0.00 0.00 2.92
705 5412 5.967088 ACGATACAAAGCAGTCAAGATACT 58.033 37.500 0.00 0.00 0.00 2.12
729 5724 9.481340 ACTGTCACATACTGCATATTTATACTG 57.519 33.333 0.00 0.00 0.00 2.74
732 5727 8.223769 GTCACATACTGCATATTTATACTGCAC 58.776 37.037 0.00 0.00 40.75 4.57
740 5735 6.157211 GCATATTTATACTGCACTCCGTACT 58.843 40.000 0.00 0.00 35.96 2.73
749 5744 1.080705 ACTCCGTACTTGCGTGCTC 60.081 57.895 0.00 0.00 0.00 4.26
775 5770 0.179004 AACGGGCAACTTCCATGTGA 60.179 50.000 0.00 0.00 0.00 3.58
800 5795 4.007659 AGTGTCGACCTTTTTGTTGAAGT 58.992 39.130 14.12 0.00 30.56 3.01
801 5796 4.095610 GTGTCGACCTTTTTGTTGAAGTG 58.904 43.478 14.12 0.00 30.56 3.16
802 5797 3.754323 TGTCGACCTTTTTGTTGAAGTGT 59.246 39.130 14.12 0.00 30.56 3.55
803 5798 4.095610 GTCGACCTTTTTGTTGAAGTGTG 58.904 43.478 3.51 0.00 30.56 3.82
804 5799 4.004314 TCGACCTTTTTGTTGAAGTGTGA 58.996 39.130 0.00 0.00 0.00 3.58
805 5800 4.094294 TCGACCTTTTTGTTGAAGTGTGAG 59.906 41.667 0.00 0.00 0.00 3.51
806 5801 4.094294 CGACCTTTTTGTTGAAGTGTGAGA 59.906 41.667 0.00 0.00 0.00 3.27
807 5802 5.220854 CGACCTTTTTGTTGAAGTGTGAGAT 60.221 40.000 0.00 0.00 0.00 2.75
808 5803 6.530019 ACCTTTTTGTTGAAGTGTGAGATT 57.470 33.333 0.00 0.00 0.00 2.40
809 5804 7.466725 CGACCTTTTTGTTGAAGTGTGAGATTA 60.467 37.037 0.00 0.00 0.00 1.75
810 5805 7.707104 ACCTTTTTGTTGAAGTGTGAGATTAG 58.293 34.615 0.00 0.00 0.00 1.73
821 5816 6.202516 AGTGTGAGATTAGAGTCTGCTAAC 57.797 41.667 1.86 1.84 33.53 2.34
843 5838 3.060272 CACCGCAAATTACGCTAGATCTG 60.060 47.826 5.18 0.00 0.00 2.90
906 5939 9.080097 ACCCAGTTTATCTATGACTATGAGTAC 57.920 37.037 0.00 0.00 0.00 2.73
930 5963 1.203052 GATGGATGCACACCCAGTTTG 59.797 52.381 9.71 0.00 35.67 2.93
1098 6131 0.249911 AGGGTGTGAAGCAAGACGTC 60.250 55.000 7.70 7.70 0.00 4.34
1122 6155 1.434188 TCCTCACCAAAGAGCTTCCA 58.566 50.000 0.00 0.00 34.26 3.53
1197 6230 0.913451 AGCAGGTGAAGATCTGGGCT 60.913 55.000 0.00 0.00 30.02 5.19
1249 6282 1.421268 AGGATGTGGTTGACAGCTTCA 59.579 47.619 0.00 0.00 41.03 3.02
1338 6371 2.452491 AACTTGCTCCCCAGGGGT 60.452 61.111 25.52 0.00 44.74 4.95
1342 6375 1.926426 CTTGCTCCCCAGGGGTAAGG 61.926 65.000 25.52 13.81 44.74 2.69
1404 6437 1.831652 AAGTCAAGGAGGTGGCCGAG 61.832 60.000 0.00 0.00 0.00 4.63
1425 6458 3.053828 CGTGACAGGTACGGGGTT 58.946 61.111 0.00 0.00 37.86 4.11
1430 6463 1.555992 TGACAGGTACGGGGTTAATGG 59.444 52.381 0.00 0.00 0.00 3.16
1459 6492 0.469917 TAATCTAGCTGCAGCCCCAC 59.530 55.000 34.39 7.70 43.38 4.61
1477 6510 2.348888 CCTACCGTTGACCCTCGCT 61.349 63.158 0.00 0.00 0.00 4.93
1521 6554 1.160137 AAGAGCTTGTTGGCATCGAC 58.840 50.000 0.00 0.00 34.17 4.20
1529 6562 1.739929 TTGGCATCGACGTCGCAAT 60.740 52.632 32.19 19.07 39.60 3.56
1571 6604 2.910737 CGGATGGGGATGGGGATGG 61.911 68.421 0.00 0.00 0.00 3.51
1572 6605 2.551413 GGATGGGGATGGGGATGGG 61.551 68.421 0.00 0.00 0.00 4.00
1573 6606 2.455122 ATGGGGATGGGGATGGGG 60.455 66.667 0.00 0.00 0.00 4.96
1574 6607 3.078909 ATGGGGATGGGGATGGGGA 62.079 63.158 0.00 0.00 0.00 4.81
1575 6608 2.120854 GGGGATGGGGATGGGGAT 60.121 66.667 0.00 0.00 0.00 3.85
1576 6609 2.551413 GGGGATGGGGATGGGGATG 61.551 68.421 0.00 0.00 0.00 3.51
1620 6654 5.743636 TTCTCTCCATTTTTGGAATTGGG 57.256 39.130 0.00 0.00 37.06 4.12
1636 6670 0.758685 TGGGGGACTTGGCAAAACAG 60.759 55.000 0.00 0.00 0.00 3.16
1661 6695 1.073763 TGCCAAAGTAGTGCATCAGGT 59.926 47.619 0.00 0.00 0.00 4.00
1728 6762 2.100605 AGCCCGATGTGAAGAAAGTC 57.899 50.000 0.00 0.00 0.00 3.01
1787 6821 5.695816 GCTACAAGAAATCCAATGCACAAAA 59.304 36.000 0.00 0.00 0.00 2.44
1822 6856 3.066900 GCAGCTCATAGTAGAACTCCGAA 59.933 47.826 0.00 0.00 0.00 4.30
1865 6903 2.833338 ACGCACCAACTACCTATTACCA 59.167 45.455 0.00 0.00 0.00 3.25
1903 6941 6.018262 TCTCGGACAATAACTTCAAGTTTGTG 60.018 38.462 8.41 9.44 39.51 3.33
1922 6960 5.694231 TGTGTTCATTGACATTCAGGAAG 57.306 39.130 0.00 0.00 0.00 3.46
1929 6967 5.985530 TCATTGACATTCAGGAAGTATAGCG 59.014 40.000 0.00 0.00 0.00 4.26
1930 6968 5.339008 TTGACATTCAGGAAGTATAGCGT 57.661 39.130 0.00 0.00 0.00 5.07
1949 6987 5.712217 GCGTAATGCTGTCACTAATAACA 57.288 39.130 0.00 0.00 41.73 2.41
1962 7002 5.647658 TCACTAATAACAATTGAGCACCCAG 59.352 40.000 13.59 2.98 0.00 4.45
1965 7005 5.391312 AATAACAATTGAGCACCCAGAAC 57.609 39.130 13.59 0.00 0.00 3.01
1971 7011 2.885135 TGAGCACCCAGAACATGATT 57.115 45.000 0.00 0.00 0.00 2.57
1977 7017 6.127647 TGAGCACCCAGAACATGATTAAATTC 60.128 38.462 0.00 0.00 0.00 2.17
2030 7071 8.372877 TGGATGTCACCCAAATTAAATACAAT 57.627 30.769 0.00 0.00 0.00 2.71
2040 7081 9.840427 CCCAAATTAAATACAATAGAATAGCCG 57.160 33.333 0.00 0.00 0.00 5.52
2050 7091 7.484035 ACAATAGAATAGCCGTTCATCTTTC 57.516 36.000 2.04 0.00 0.00 2.62
2051 7092 6.483640 ACAATAGAATAGCCGTTCATCTTTCC 59.516 38.462 2.04 0.00 0.00 3.13
2082 7123 9.783081 TTAGTGCATATGTATCATCAATTCAGT 57.217 29.630 4.29 0.00 0.00 3.41
2136 7183 3.557595 CACGAATTAGGAGCAACTGGATC 59.442 47.826 0.00 0.00 0.00 3.36
2168 7215 6.844696 TGAGTTGTGTCTTGAGTACAATTC 57.155 37.500 0.00 0.00 39.80 2.17
2174 7221 6.873997 TGTGTCTTGAGTACAATTCGGATAT 58.126 36.000 0.00 0.00 35.37 1.63
2180 7227 8.141909 TCTTGAGTACAATTCGGATATTAGGTG 58.858 37.037 0.00 0.00 35.37 4.00
2187 7234 8.519799 ACAATTCGGATATTAGGTGTTGATTT 57.480 30.769 0.00 0.00 0.00 2.17
2271 7318 3.826157 GGGTCTTGAACAATGACATCCAA 59.174 43.478 14.06 0.00 32.84 3.53
2272 7319 4.463891 GGGTCTTGAACAATGACATCCAAT 59.536 41.667 14.06 0.00 32.84 3.16
2273 7320 5.652014 GGGTCTTGAACAATGACATCCAATA 59.348 40.000 14.06 0.00 32.84 1.90
2335 7382 9.533253 AAACATGAGTTCAAACTTAGATTTTGG 57.467 29.630 0.00 0.00 39.88 3.28
2387 7434 8.354711 TGTATTGTTTATTTTATGCAGGACCA 57.645 30.769 0.00 0.00 0.00 4.02
2388 7435 8.976353 TGTATTGTTTATTTTATGCAGGACCAT 58.024 29.630 0.00 0.00 0.00 3.55
2389 7436 9.463443 GTATTGTTTATTTTATGCAGGACCATC 57.537 33.333 0.00 0.00 0.00 3.51
2390 7437 6.463995 TGTTTATTTTATGCAGGACCATCC 57.536 37.500 0.00 0.00 36.58 3.51
2392 7439 6.667414 TGTTTATTTTATGCAGGACCATCCTT 59.333 34.615 0.00 0.00 46.91 3.36
2393 7440 6.959639 TTATTTTATGCAGGACCATCCTTC 57.040 37.500 0.00 0.00 46.91 3.46
2394 7441 4.591321 TTTTATGCAGGACCATCCTTCT 57.409 40.909 0.00 0.00 46.91 2.85
2395 7442 4.591321 TTTATGCAGGACCATCCTTCTT 57.409 40.909 0.00 0.00 46.91 2.52
2400 7447 5.036117 TGCAGGACCATCCTTCTTATTAC 57.964 43.478 0.00 0.00 46.91 1.89
2436 7483 9.793259 AATGAAATTAACCAGAACTAGAGTTCA 57.207 29.630 21.35 3.32 45.37 3.18
2564 7615 6.856895 AGAAAGAATAGTACTGCATTTTGGC 58.143 36.000 5.39 0.00 0.00 4.52
2573 7624 1.614903 CTGCATTTTGGCTGGTCTTCA 59.385 47.619 0.00 0.00 34.04 3.02
2578 7629 4.491676 CATTTTGGCTGGTCTTCAAGATG 58.508 43.478 0.00 0.00 30.53 2.90
2593 7644 4.539726 TCAAGATGGCTGCCATATCTTTT 58.460 39.130 32.63 18.39 45.26 2.27
2594 7645 4.581824 TCAAGATGGCTGCCATATCTTTTC 59.418 41.667 32.63 19.65 45.26 2.29
2650 7702 3.370840 TTTCATGCCTATGGTGCTCTT 57.629 42.857 0.00 0.00 34.97 2.85
2706 7758 6.271585 ACATGGGATGTAGAATCAAGGAAT 57.728 37.500 0.00 0.00 42.78 3.01
2761 7813 8.567948 ACTGTGGAAGTAAAATAATCACAACTG 58.432 33.333 0.00 0.00 37.36 3.16
2773 7825 3.446310 TCACAACTGCTCGTAGTTTGA 57.554 42.857 0.00 3.98 38.78 2.69
2778 7830 4.270325 ACAACTGCTCGTAGTTTGAAAGTC 59.730 41.667 0.00 0.00 38.78 3.01
2824 7876 0.251608 GCTAAAGCCACTTTCCCCCA 60.252 55.000 0.00 0.00 35.21 4.96
2881 7933 2.829120 GGTGGTAAAAGCAAATGCCCTA 59.171 45.455 0.94 0.00 43.38 3.53
2905 7957 6.840780 TTGATCATCCGCTTGAGATATCTA 57.159 37.500 4.89 0.00 0.00 1.98
3108 8160 7.272144 ACCCTATTATCTGAGACCTTGTTTT 57.728 36.000 0.00 0.00 0.00 2.43
3147 8199 9.988815 ATATATCCAGAAGACTACACAATCAAC 57.011 33.333 0.00 0.00 0.00 3.18
3208 8260 0.759346 CAAGGAGGAACCGGGGATAG 59.241 60.000 6.32 0.00 44.74 2.08
3398 8450 6.966534 ATGGGATGTTAATGATCAAAGGAC 57.033 37.500 0.00 0.00 0.00 3.85
3403 8455 7.040823 GGGATGTTAATGATCAAAGGACATCTC 60.041 40.741 26.38 23.30 40.82 2.75
3415 8467 4.222124 AGGACATCTCGCCAAAGTAATT 57.778 40.909 0.00 0.00 0.00 1.40
3435 8487 2.029623 TCTCGTAGGTTAGCCATCCAC 58.970 52.381 0.00 0.00 37.19 4.02
3476 8528 4.383552 GGATGACTCTCTGGCTAACATGTT 60.384 45.833 16.68 16.68 0.00 2.71
3506 8558 1.896220 TTGAGGTCATTCAGTGCCAC 58.104 50.000 0.00 0.00 0.00 5.01
3596 8648 9.396022 GGAAGATTGTAGTTTTAATGGAGATGA 57.604 33.333 0.00 0.00 0.00 2.92
3599 8651 9.167311 AGATTGTAGTTTTAATGGAGATGACAC 57.833 33.333 0.00 0.00 0.00 3.67
3627 8679 2.305927 TCTGGACCATCTTGGGAGTTTC 59.694 50.000 0.00 0.00 43.37 2.78
3716 8774 0.179020 TTGCAGACACTGGACTTGGG 60.179 55.000 0.00 0.00 30.08 4.12
3719 8777 2.034221 GACACTGGACTTGGGGGC 59.966 66.667 0.00 0.00 0.00 5.80
3785 8849 1.065358 CTCAAGCGCTTGCATTTTGG 58.935 50.000 38.89 18.08 42.66 3.28
3786 8850 0.388659 TCAAGCGCTTGCATTTTGGT 59.611 45.000 38.89 5.05 42.66 3.67
3807 8871 1.666189 GTCGCTGAAGGAATAGTTGGC 59.334 52.381 0.00 0.00 0.00 4.52
3859 8923 8.610896 CATTGGAAGATCTACAGTTGAGATTTC 58.389 37.037 0.00 0.00 33.71 2.17
3860 8924 6.333416 TGGAAGATCTACAGTTGAGATTTCG 58.667 40.000 0.00 0.00 33.71 3.46
3934 8998 7.773224 TGAGGAATCTCAAACTTTTCACTTACA 59.227 33.333 0.00 0.00 46.08 2.41
3935 8999 8.519799 AGGAATCTCAAACTTTTCACTTACAA 57.480 30.769 0.00 0.00 0.00 2.41
3936 9000 8.966868 AGGAATCTCAAACTTTTCACTTACAAA 58.033 29.630 0.00 0.00 0.00 2.83
3937 9001 9.237846 GGAATCTCAAACTTTTCACTTACAAAG 57.762 33.333 0.00 0.00 36.28 2.77
3988 9058 1.949525 TGAAGTCTCTTGGCAAACTGC 59.050 47.619 0.00 1.19 44.08 4.40
4020 9090 6.506500 CAAATTCTGGACATTTACTCTGCT 57.493 37.500 0.00 0.00 0.00 4.24
4021 9091 7.615582 CAAATTCTGGACATTTACTCTGCTA 57.384 36.000 0.00 0.00 0.00 3.49
4022 9092 8.218338 CAAATTCTGGACATTTACTCTGCTAT 57.782 34.615 0.00 0.00 0.00 2.97
4024 9094 9.905713 AAATTCTGGACATTTACTCTGCTATTA 57.094 29.630 0.00 0.00 0.00 0.98
4097 9167 4.446371 CTCCGTGAATTCAGGCTAAGAAT 58.554 43.478 20.23 0.00 37.30 2.40
4161 9231 4.974645 TCAGAACCTCACCAGTTTATGT 57.025 40.909 0.00 0.00 0.00 2.29
4225 9295 1.433534 GAGTTTCCCAGAGCTCGTTG 58.566 55.000 8.37 1.60 0.00 4.10
4264 9334 1.302511 TTTCTGGGGTTGAGCGAGC 60.303 57.895 0.00 0.00 0.00 5.03
4266 9336 4.020617 CTGGGGTTGAGCGAGCCA 62.021 66.667 8.14 0.00 38.95 4.75
4384 9454 4.526970 GAGCCTTGAATCCCTTGATTACA 58.473 43.478 0.00 0.00 41.30 2.41
4385 9455 4.273318 AGCCTTGAATCCCTTGATTACAC 58.727 43.478 0.00 0.00 41.30 2.90
4393 9463 7.509546 TGAATCCCTTGATTACACTTATCTCC 58.490 38.462 0.00 0.00 41.30 3.71
4395 9465 7.639062 ATCCCTTGATTACACTTATCTCCAT 57.361 36.000 0.00 0.00 0.00 3.41
4418 9488 1.461127 GGATCAGTTGAAGCGTGACAC 59.539 52.381 0.00 0.00 0.00 3.67
4421 9491 1.013596 CAGTTGAAGCGTGACACCAA 58.986 50.000 0.00 0.00 0.00 3.67
4488 9558 6.857777 CAGAAAGTGGAAGCTATTATCCTG 57.142 41.667 3.88 0.00 36.64 3.86
4489 9559 6.586344 CAGAAAGTGGAAGCTATTATCCTGA 58.414 40.000 3.88 0.00 36.64 3.86
4495 9565 7.479579 AGTGGAAGCTATTATCCTGATAGGTA 58.520 38.462 3.88 0.00 36.96 3.08
4509 9579 5.451242 CCTGATAGGTACAGCTCAAGAGAAC 60.451 48.000 0.32 0.00 34.47 3.01
4584 9654 5.337330 CCGTCCTAACCTTACAGTCAAGAAT 60.337 44.000 0.00 0.00 0.00 2.40
4587 9657 7.488471 CGTCCTAACCTTACAGTCAAGAATTAG 59.512 40.741 0.00 0.00 31.00 1.73
4588 9658 8.529476 GTCCTAACCTTACAGTCAAGAATTAGA 58.471 37.037 0.00 0.00 31.88 2.10
4611 9681 8.654230 AGAGATTGTAAGTACATGCATACTTG 57.346 34.615 20.40 4.45 43.64 3.16
4627 9697 6.368791 TGCATACTTGTAGCTGAGTTTAAGTG 59.631 38.462 0.00 0.00 31.55 3.16
4636 9706 4.290969 GCTGAGTTTAAGTGGTTTTCAGC 58.709 43.478 7.68 7.68 46.01 4.26
4668 9738 3.242867 TCCTGTCTCTCTCACCAAACAT 58.757 45.455 0.00 0.00 0.00 2.71
4732 9815 8.939929 CAACTCTATTTGAACTCTATTTGCAGA 58.060 33.333 0.00 0.00 0.00 4.26
4775 9858 9.066892 ACTAATTGTCATCAACACAGTTAATGT 57.933 29.630 0.00 0.00 37.70 2.71
4811 9896 0.251341 TTTCCAAGCAAGCTCCTCCC 60.251 55.000 0.00 0.00 0.00 4.30
4813 9898 2.759114 CAAGCAAGCTCCTCCCCA 59.241 61.111 0.00 0.00 0.00 4.96
4822 9907 0.320050 GCTCCTCCCCAATCGATCTC 59.680 60.000 0.00 0.00 0.00 2.75
4838 9923 6.085555 TCGATCTCCGCTTCAACTATTATT 57.914 37.500 0.00 0.00 38.37 1.40
4911 10004 4.526970 ACTTAATCGATGCACCTGGATTT 58.473 39.130 0.00 0.00 31.95 2.17
4974 10070 6.407202 AGCTACCTTTCATTCTTTACGTGAT 58.593 36.000 0.00 0.00 0.00 3.06
5110 10207 4.520874 TGTTTTTGCAATGGATCTCGGTAA 59.479 37.500 0.00 0.00 0.00 2.85
5231 10352 4.937620 TGCCTCAGAAATATTGACTGTCAC 59.062 41.667 10.56 0.00 33.93 3.67
5234 10355 6.094603 GCCTCAGAAATATTGACTGTCACAAT 59.905 38.462 10.56 5.11 40.40 2.71
5235 10356 7.470079 CCTCAGAAATATTGACTGTCACAATG 58.530 38.462 10.56 3.44 38.25 2.82
5236 10357 7.381766 TCAGAAATATTGACTGTCACAATGG 57.618 36.000 10.56 0.00 38.25 3.16
5237 10358 6.942005 TCAGAAATATTGACTGTCACAATGGT 59.058 34.615 10.56 0.00 38.25 3.55
5238 10359 7.025365 CAGAAATATTGACTGTCACAATGGTG 58.975 38.462 10.56 0.00 46.66 4.17
5247 10368 3.156714 ACAATGGTGAGGGCGTCA 58.843 55.556 5.66 5.66 0.00 4.35
5248 10369 1.003355 ACAATGGTGAGGGCGTCAG 60.003 57.895 10.61 0.94 35.13 3.51
5249 10370 1.296392 CAATGGTGAGGGCGTCAGA 59.704 57.895 10.61 0.57 35.13 3.27
5250 10371 0.321564 CAATGGTGAGGGCGTCAGAA 60.322 55.000 10.61 2.12 35.13 3.02
5293 10414 3.316029 ACGTTTTAAGTAACACCCTTGCC 59.684 43.478 0.00 0.00 0.00 4.52
5299 10420 2.238521 AGTAACACCCTTGCCAATGTG 58.761 47.619 5.88 5.88 34.92 3.21
5300 10421 1.960689 GTAACACCCTTGCCAATGTGT 59.039 47.619 6.97 6.97 43.36 3.72
5301 10422 2.373335 AACACCCTTGCCAATGTGTA 57.627 45.000 11.76 0.00 40.83 2.90
5302 10423 1.616159 ACACCCTTGCCAATGTGTAC 58.384 50.000 10.18 0.00 39.98 2.90
5303 10424 1.144913 ACACCCTTGCCAATGTGTACT 59.855 47.619 10.18 0.00 39.98 2.73
5304 10425 1.812571 CACCCTTGCCAATGTGTACTC 59.187 52.381 0.00 0.00 0.00 2.59
5305 10426 1.271926 ACCCTTGCCAATGTGTACTCC 60.272 52.381 0.00 0.00 0.00 3.85
5306 10427 1.463674 CCTTGCCAATGTGTACTCCC 58.536 55.000 0.00 0.00 0.00 4.30
5307 10428 1.004745 CCTTGCCAATGTGTACTCCCT 59.995 52.381 0.00 0.00 0.00 4.20
5308 10429 2.359900 CTTGCCAATGTGTACTCCCTC 58.640 52.381 0.00 0.00 0.00 4.30
5309 10430 0.249120 TGCCAATGTGTACTCCCTCG 59.751 55.000 0.00 0.00 0.00 4.63
5310 10431 0.462047 GCCAATGTGTACTCCCTCGG 60.462 60.000 0.00 0.00 0.00 4.63
5311 10432 0.902531 CCAATGTGTACTCCCTCGGT 59.097 55.000 0.00 0.00 0.00 4.69
5312 10433 1.134788 CCAATGTGTACTCCCTCGGTC 60.135 57.143 0.00 0.00 0.00 4.79
5313 10434 1.134788 CAATGTGTACTCCCTCGGTCC 60.135 57.143 0.00 0.00 0.00 4.46
5314 10435 1.035932 ATGTGTACTCCCTCGGTCCG 61.036 60.000 4.39 4.39 0.00 4.79
5315 10436 1.377725 GTGTACTCCCTCGGTCCGA 60.378 63.158 14.54 14.54 0.00 4.55
5316 10437 0.962356 GTGTACTCCCTCGGTCCGAA 60.962 60.000 16.23 0.00 34.74 4.30
5317 10438 0.251297 TGTACTCCCTCGGTCCGAAA 60.251 55.000 16.23 3.03 34.74 3.46
5318 10439 0.890683 GTACTCCCTCGGTCCGAAAA 59.109 55.000 16.23 2.66 34.74 2.29
5319 10440 1.479730 GTACTCCCTCGGTCCGAAAAT 59.520 52.381 16.23 2.15 34.74 1.82
5320 10441 1.856629 ACTCCCTCGGTCCGAAAATA 58.143 50.000 16.23 0.42 34.74 1.40
5321 10442 1.479730 ACTCCCTCGGTCCGAAAATAC 59.520 52.381 16.23 0.00 34.74 1.89
5322 10443 1.755380 CTCCCTCGGTCCGAAAATACT 59.245 52.381 16.23 0.00 34.74 2.12
5323 10444 2.167900 CTCCCTCGGTCCGAAAATACTT 59.832 50.000 16.23 0.00 34.74 2.24
5324 10445 2.093869 TCCCTCGGTCCGAAAATACTTG 60.094 50.000 16.23 0.47 34.74 3.16
5325 10446 2.354403 CCCTCGGTCCGAAAATACTTGT 60.354 50.000 16.23 0.00 34.74 3.16
5326 10447 2.928116 CCTCGGTCCGAAAATACTTGTC 59.072 50.000 16.23 0.00 34.74 3.18
5327 10448 2.928116 CTCGGTCCGAAAATACTTGTCC 59.072 50.000 16.23 0.00 34.74 4.02
5328 10449 1.657094 CGGTCCGAAAATACTTGTCCG 59.343 52.381 4.91 0.00 0.00 4.79
5329 10450 2.671914 CGGTCCGAAAATACTTGTCCGA 60.672 50.000 4.91 0.00 38.03 4.55
5330 10451 2.928116 GGTCCGAAAATACTTGTCCGAG 59.072 50.000 0.00 0.00 0.00 4.63
5331 10452 3.367703 GGTCCGAAAATACTTGTCCGAGA 60.368 47.826 0.00 0.00 0.00 4.04
5332 10453 4.240096 GTCCGAAAATACTTGTCCGAGAA 58.760 43.478 0.00 0.00 0.00 2.87
5333 10454 4.687483 GTCCGAAAATACTTGTCCGAGAAA 59.313 41.667 0.00 0.00 0.00 2.52
5334 10455 5.350640 GTCCGAAAATACTTGTCCGAGAAAT 59.649 40.000 0.00 0.00 0.00 2.17
5335 10456 6.532657 GTCCGAAAATACTTGTCCGAGAAATA 59.467 38.462 0.00 0.00 0.00 1.40
5336 10457 6.755141 TCCGAAAATACTTGTCCGAGAAATAG 59.245 38.462 0.00 0.00 0.00 1.73
5337 10458 6.755141 CCGAAAATACTTGTCCGAGAAATAGA 59.245 38.462 0.00 0.00 0.00 1.98
5338 10459 7.438459 CCGAAAATACTTGTCCGAGAAATAGAT 59.562 37.037 0.00 0.00 0.00 1.98
5339 10460 8.269424 CGAAAATACTTGTCCGAGAAATAGATG 58.731 37.037 0.00 0.00 0.00 2.90
5340 10461 9.099454 GAAAATACTTGTCCGAGAAATAGATGT 57.901 33.333 0.00 0.00 0.00 3.06
5343 10464 9.915629 AATACTTGTCCGAGAAATAGATGTATC 57.084 33.333 0.00 0.00 0.00 2.24
5344 10465 7.589958 ACTTGTCCGAGAAATAGATGTATCT 57.410 36.000 0.00 0.00 40.86 1.98
5345 10466 8.693120 ACTTGTCCGAGAAATAGATGTATCTA 57.307 34.615 4.22 4.22 43.00 1.98
5346 10467 8.788806 ACTTGTCCGAGAAATAGATGTATCTAG 58.211 37.037 7.57 0.00 42.20 2.43
5347 10468 8.919777 TTGTCCGAGAAATAGATGTATCTAGA 57.080 34.615 7.57 0.00 42.20 2.43
5348 10469 9.521841 TTGTCCGAGAAATAGATGTATCTAGAT 57.478 33.333 10.73 10.73 42.20 1.98
5349 10470 8.951243 TGTCCGAGAAATAGATGTATCTAGATG 58.049 37.037 15.79 0.00 42.20 2.90
5350 10471 8.952278 GTCCGAGAAATAGATGTATCTAGATGT 58.048 37.037 15.79 1.25 42.20 3.06
5403 10524 7.372451 TCCATTTCTACAACAAGTATTTCCG 57.628 36.000 0.00 0.00 30.93 4.30
5404 10525 6.373216 TCCATTTCTACAACAAGTATTTCCGG 59.627 38.462 0.00 0.00 30.93 5.14
5405 10526 6.373216 CCATTTCTACAACAAGTATTTCCGGA 59.627 38.462 0.00 0.00 30.93 5.14
5406 10527 6.790285 TTTCTACAACAAGTATTTCCGGAC 57.210 37.500 1.83 0.00 30.93 4.79
5407 10528 4.487948 TCTACAACAAGTATTTCCGGACG 58.512 43.478 1.83 0.00 30.93 4.79
5408 10529 2.419667 ACAACAAGTATTTCCGGACGG 58.580 47.619 1.83 3.96 0.00 4.79
5409 10530 2.037511 ACAACAAGTATTTCCGGACGGA 59.962 45.455 1.83 9.76 43.52 4.69
5410 10531 2.667473 ACAAGTATTTCCGGACGGAG 57.333 50.000 13.64 3.15 46.06 4.63
5411 10532 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5412 10533 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5413 10534 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
5424 10545 2.027469 GGACGGAGGGAGTACATGTTTT 60.027 50.000 2.30 0.00 0.00 2.43
5427 10548 3.836562 ACGGAGGGAGTACATGTTTTAGT 59.163 43.478 2.30 0.00 0.00 2.24
5453 10574 5.047188 CGTTTAGTTTGTTTCCCAGCATTT 58.953 37.500 0.00 0.00 0.00 2.32
5514 10635 4.365514 TTTCTTCCTCACACAGCCATAA 57.634 40.909 0.00 0.00 0.00 1.90
5517 10638 4.724399 TCTTCCTCACACAGCCATAAAAA 58.276 39.130 0.00 0.00 0.00 1.94
5519 10640 6.480763 TCTTCCTCACACAGCCATAAAAATA 58.519 36.000 0.00 0.00 0.00 1.40
5554 10677 1.141858 GAGAAGGGGATCATTTCGGCT 59.858 52.381 0.00 0.00 0.00 5.52
5557 10680 1.216990 AGGGGATCATTTCGGCTTCT 58.783 50.000 0.00 0.00 0.00 2.85
5558 10681 1.141858 AGGGGATCATTTCGGCTTCTC 59.858 52.381 0.00 0.00 0.00 2.87
5585 10708 2.419990 CCGTGATGCAGACCCATAGAAA 60.420 50.000 0.00 0.00 0.00 2.52
5586 10709 3.470709 CGTGATGCAGACCCATAGAAAT 58.529 45.455 0.00 0.00 0.00 2.17
5587 10710 3.249320 CGTGATGCAGACCCATAGAAATG 59.751 47.826 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.301577 TCCCCGCAAACAAACTTTTG 57.698 45.000 0.00 0.00 43.62 2.44
23 24 4.674281 TTATCCCCGCAAACAAACTTTT 57.326 36.364 0.00 0.00 0.00 2.27
24 25 4.882842 ATTATCCCCGCAAACAAACTTT 57.117 36.364 0.00 0.00 0.00 2.66
25 26 4.882842 AATTATCCCCGCAAACAAACTT 57.117 36.364 0.00 0.00 0.00 2.66
26 27 4.882842 AAATTATCCCCGCAAACAAACT 57.117 36.364 0.00 0.00 0.00 2.66
27 28 5.471257 TGTAAATTATCCCCGCAAACAAAC 58.529 37.500 0.00 0.00 0.00 2.93
28 29 5.477291 TCTGTAAATTATCCCCGCAAACAAA 59.523 36.000 0.00 0.00 0.00 2.83
29 30 5.010933 TCTGTAAATTATCCCCGCAAACAA 58.989 37.500 0.00 0.00 0.00 2.83
30 31 4.590918 TCTGTAAATTATCCCCGCAAACA 58.409 39.130 0.00 0.00 0.00 2.83
31 32 5.570234 TTCTGTAAATTATCCCCGCAAAC 57.430 39.130 0.00 0.00 0.00 2.93
32 33 8.472007 AATATTCTGTAAATTATCCCCGCAAA 57.528 30.769 0.00 0.00 0.00 3.68
34 35 7.523052 GCAAATATTCTGTAAATTATCCCCGCA 60.523 37.037 0.00 0.00 0.00 5.69
35 36 6.806739 GCAAATATTCTGTAAATTATCCCCGC 59.193 38.462 0.00 0.00 0.00 6.13
38 39 9.143631 GCATGCAAATATTCTGTAAATTATCCC 57.856 33.333 14.21 0.00 0.00 3.85
40 41 9.143631 GGGCATGCAAATATTCTGTAAATTATC 57.856 33.333 21.36 0.00 0.00 1.75
41 42 8.873144 AGGGCATGCAAATATTCTGTAAATTAT 58.127 29.630 21.36 0.00 0.00 1.28
42 43 8.248904 AGGGCATGCAAATATTCTGTAAATTA 57.751 30.769 21.36 0.00 0.00 1.40
43 44 7.070322 AGAGGGCATGCAAATATTCTGTAAATT 59.930 33.333 21.36 0.00 0.00 1.82
44 45 6.552350 AGAGGGCATGCAAATATTCTGTAAAT 59.448 34.615 21.36 0.00 0.00 1.40
47 48 5.052693 AGAGGGCATGCAAATATTCTGTA 57.947 39.130 21.36 0.00 0.00 2.74
48 49 3.907221 AGAGGGCATGCAAATATTCTGT 58.093 40.909 21.36 0.72 0.00 3.41
49 50 5.766670 TCTTAGAGGGCATGCAAATATTCTG 59.233 40.000 21.36 1.68 0.00 3.02
51 52 6.432162 TCATCTTAGAGGGCATGCAAATATTC 59.568 38.462 21.36 7.08 0.00 1.75
52 53 6.309357 TCATCTTAGAGGGCATGCAAATATT 58.691 36.000 21.36 1.98 0.00 1.28
53 54 5.884322 TCATCTTAGAGGGCATGCAAATAT 58.116 37.500 21.36 4.18 0.00 1.28
54 55 5.308976 TCATCTTAGAGGGCATGCAAATA 57.691 39.130 21.36 3.51 0.00 1.40
56 57 3.650281 TCATCTTAGAGGGCATGCAAA 57.350 42.857 21.36 4.39 0.00 3.68
57 58 3.393609 AGATCATCTTAGAGGGCATGCAA 59.606 43.478 21.36 3.42 0.00 4.08
59 60 3.699411 AGATCATCTTAGAGGGCATGC 57.301 47.619 9.90 9.90 0.00 4.06
60 61 5.117584 GCATAGATCATCTTAGAGGGCATG 58.882 45.833 0.00 0.00 0.00 4.06
62 63 4.162651 TGCATAGATCATCTTAGAGGGCA 58.837 43.478 0.00 0.00 0.00 5.36
63 64 4.815533 TGCATAGATCATCTTAGAGGGC 57.184 45.455 0.00 0.00 0.00 5.19
64 65 8.484575 ACAATATGCATAGATCATCTTAGAGGG 58.515 37.037 12.79 0.00 0.00 4.30
65 66 9.887629 AACAATATGCATAGATCATCTTAGAGG 57.112 33.333 12.79 0.00 0.00 3.69
97 98 9.336171 GCATCTCAAAAGGAAGAGAACTAATAT 57.664 33.333 0.00 0.00 43.47 1.28
99 100 7.170965 TGCATCTCAAAAGGAAGAGAACTAAT 58.829 34.615 0.00 0.00 43.47 1.73
100 101 6.533730 TGCATCTCAAAAGGAAGAGAACTAA 58.466 36.000 0.00 0.00 43.47 2.24
102 103 4.978099 TGCATCTCAAAAGGAAGAGAACT 58.022 39.130 0.00 0.00 43.47 3.01
103 104 5.893897 ATGCATCTCAAAAGGAAGAGAAC 57.106 39.130 0.00 0.00 43.47 3.01
105 106 5.587844 GCTTATGCATCTCAAAAGGAAGAGA 59.412 40.000 0.19 0.00 44.27 3.10
106 107 5.356190 TGCTTATGCATCTCAAAAGGAAGAG 59.644 40.000 0.19 0.00 45.31 2.85
107 108 5.255687 TGCTTATGCATCTCAAAAGGAAGA 58.744 37.500 0.19 0.00 45.31 2.87
108 109 5.571784 TGCTTATGCATCTCAAAAGGAAG 57.428 39.130 0.19 0.00 45.31 3.46
122 123 4.618489 GTGTTGTGAGAAATGTGCTTATGC 59.382 41.667 0.00 0.00 40.20 3.14
123 124 5.156355 GGTGTTGTGAGAAATGTGCTTATG 58.844 41.667 0.00 0.00 0.00 1.90
124 125 4.218417 GGGTGTTGTGAGAAATGTGCTTAT 59.782 41.667 0.00 0.00 0.00 1.73
125 126 3.568007 GGGTGTTGTGAGAAATGTGCTTA 59.432 43.478 0.00 0.00 0.00 3.09
128 129 1.956477 AGGGTGTTGTGAGAAATGTGC 59.044 47.619 0.00 0.00 0.00 4.57
129 130 3.480470 AGAGGGTGTTGTGAGAAATGTG 58.520 45.455 0.00 0.00 0.00 3.21
130 131 3.864789 AGAGGGTGTTGTGAGAAATGT 57.135 42.857 0.00 0.00 0.00 2.71
173 4864 7.036220 TGAACTTTCTTTTACATTCCGCAAAA 58.964 30.769 0.00 0.00 0.00 2.44
179 4870 8.084684 AGAGCAATGAACTTTCTTTTACATTCC 58.915 33.333 0.00 0.00 0.00 3.01
184 4875 6.207614 AGGGAGAGCAATGAACTTTCTTTTAC 59.792 38.462 0.00 0.00 0.00 2.01
188 4879 4.379302 AGGGAGAGCAATGAACTTTCTT 57.621 40.909 0.00 0.00 0.00 2.52
195 4886 6.672593 ACCAATAATTAGGGAGAGCAATGAA 58.327 36.000 11.77 0.00 0.00 2.57
202 4893 6.739331 ACTCAGACCAATAATTAGGGAGAG 57.261 41.667 11.77 14.72 0.00 3.20
214 4905 4.583871 CTTGAGCCTAAACTCAGACCAAT 58.416 43.478 0.00 0.00 46.85 3.16
249 4943 3.181466 GGCTTGACCAACTTCCAAATTGT 60.181 43.478 0.00 0.00 38.86 2.71
250 4944 3.392882 GGCTTGACCAACTTCCAAATTG 58.607 45.455 0.00 0.00 38.86 2.32
270 4964 3.691049 TTTTTGTCGAAAGAGCAGTGG 57.309 42.857 0.00 0.00 43.49 4.00
295 4989 6.691388 GTGAAGTAACGCAGATTCAACTTTTT 59.309 34.615 0.00 0.00 33.74 1.94
300 4994 3.722123 CGTGAAGTAACGCAGATTCAAC 58.278 45.455 0.00 0.00 36.65 3.18
311 5005 3.848582 GGTAGTCTAACGCGTGAAGTAAC 59.151 47.826 14.98 7.72 0.00 2.50
326 5020 9.401058 CTTCATATTTTCCATCTTTGGTAGTCT 57.599 33.333 0.00 0.00 44.06 3.24
327 5021 9.396022 TCTTCATATTTTCCATCTTTGGTAGTC 57.604 33.333 0.00 0.00 44.06 2.59
328 5022 9.753674 TTCTTCATATTTTCCATCTTTGGTAGT 57.246 29.630 0.00 0.00 44.06 2.73
340 5034 7.374491 CGCTCGAGATTTTTCTTCATATTTTCC 59.626 37.037 18.75 0.00 0.00 3.13
341 5035 7.905493 ACGCTCGAGATTTTTCTTCATATTTTC 59.095 33.333 18.75 0.00 0.00 2.29
343 5037 7.148407 ACACGCTCGAGATTTTTCTTCATATTT 60.148 33.333 18.75 0.00 0.00 1.40
344 5038 6.313905 ACACGCTCGAGATTTTTCTTCATATT 59.686 34.615 18.75 0.00 0.00 1.28
345 5039 5.812642 ACACGCTCGAGATTTTTCTTCATAT 59.187 36.000 18.75 0.00 0.00 1.78
347 5041 3.997021 ACACGCTCGAGATTTTTCTTCAT 59.003 39.130 18.75 0.00 0.00 2.57
348 5042 3.390135 ACACGCTCGAGATTTTTCTTCA 58.610 40.909 18.75 0.00 0.00 3.02
350 5044 4.567159 GGATACACGCTCGAGATTTTTCTT 59.433 41.667 18.75 0.00 0.00 2.52
351 5045 4.113354 GGATACACGCTCGAGATTTTTCT 58.887 43.478 18.75 0.00 0.00 2.52
352 5046 4.113354 AGGATACACGCTCGAGATTTTTC 58.887 43.478 18.75 4.96 41.41 2.29
353 5047 4.124851 AGGATACACGCTCGAGATTTTT 57.875 40.909 18.75 0.00 41.41 1.94
354 5048 3.802948 AGGATACACGCTCGAGATTTT 57.197 42.857 18.75 0.00 41.41 1.82
355 5049 3.491104 GGAAGGATACACGCTCGAGATTT 60.491 47.826 18.75 0.00 41.41 2.17
356 5050 2.034812 GGAAGGATACACGCTCGAGATT 59.965 50.000 18.75 0.00 41.41 2.40
357 5051 1.609555 GGAAGGATACACGCTCGAGAT 59.390 52.381 18.75 0.00 41.41 2.75
358 5052 1.022735 GGAAGGATACACGCTCGAGA 58.977 55.000 18.75 0.00 41.41 4.04
359 5053 1.002251 GAGGAAGGATACACGCTCGAG 60.002 57.143 8.45 8.45 41.41 4.04
360 5054 1.022735 GAGGAAGGATACACGCTCGA 58.977 55.000 0.00 0.00 41.41 4.04
361 5055 0.738975 TGAGGAAGGATACACGCTCG 59.261 55.000 0.00 0.00 41.41 5.03
362 5056 2.961526 TTGAGGAAGGATACACGCTC 57.038 50.000 0.00 0.00 41.41 5.03
363 5057 3.961408 ACTATTGAGGAAGGATACACGCT 59.039 43.478 0.00 0.00 41.41 5.07
364 5058 4.299978 GACTATTGAGGAAGGATACACGC 58.700 47.826 0.00 0.00 41.41 5.34
365 5059 4.341235 TGGACTATTGAGGAAGGATACACG 59.659 45.833 0.00 0.00 41.41 4.49
366 5060 5.871396 TGGACTATTGAGGAAGGATACAC 57.129 43.478 0.00 0.00 41.41 2.90
367 5061 5.724370 TGTTGGACTATTGAGGAAGGATACA 59.276 40.000 0.00 0.00 41.41 2.29
368 5062 6.235231 TGTTGGACTATTGAGGAAGGATAC 57.765 41.667 0.00 0.00 0.00 2.24
369 5063 7.451731 AATGTTGGACTATTGAGGAAGGATA 57.548 36.000 0.00 0.00 0.00 2.59
370 5064 5.983333 ATGTTGGACTATTGAGGAAGGAT 57.017 39.130 0.00 0.00 0.00 3.24
371 5065 5.779241 AATGTTGGACTATTGAGGAAGGA 57.221 39.130 0.00 0.00 0.00 3.36
372 5066 9.799106 AATATAATGTTGGACTATTGAGGAAGG 57.201 33.333 0.00 0.00 0.00 3.46
375 5069 9.559732 CACAATATAATGTTGGACTATTGAGGA 57.440 33.333 7.40 0.00 35.06 3.71
385 5079 8.405531 GCTAAAAGCTCACAATATAATGTTGGA 58.594 33.333 0.00 0.00 38.45 3.53
394 5088 7.486647 CCAGAAATGCTAAAAGCTCACAATAT 58.513 34.615 0.03 0.00 42.97 1.28
395 5089 6.625740 GCCAGAAATGCTAAAAGCTCACAATA 60.626 38.462 0.03 0.00 42.97 1.90
406 5100 1.280710 TCTCCGGCCAGAAATGCTAAA 59.719 47.619 2.24 0.00 0.00 1.85
407 5101 0.908910 TCTCCGGCCAGAAATGCTAA 59.091 50.000 2.24 0.00 0.00 3.09
428 5122 5.469760 AGGCTGAAACAATGTAAAATTTGCC 59.530 36.000 0.00 0.00 34.90 4.52
433 5127 6.389906 GCACTAGGCTGAAACAATGTAAAAT 58.610 36.000 0.00 0.00 40.25 1.82
452 5146 6.488006 CCTAGTATCCCGTAGTTTAAGCACTA 59.512 42.308 0.00 0.00 0.00 2.74
470 5164 4.528596 ACTGTTCACAAGACAGCCTAGTAT 59.471 41.667 4.30 0.00 35.08 2.12
515 5209 2.808543 GTGTCAAGACCAGACATGAACC 59.191 50.000 0.00 0.00 46.52 3.62
560 5262 1.100510 CCAGCATGTGGGTTCAGATG 58.899 55.000 6.46 0.00 44.58 2.90
573 5275 0.392193 CTCGAAAGACTGGCCAGCAT 60.392 55.000 33.06 18.69 35.39 3.79
574 5276 1.004560 CTCGAAAGACTGGCCAGCA 60.005 57.895 33.06 8.14 35.39 4.41
577 5279 1.629043 ACTACTCGAAAGACTGGCCA 58.371 50.000 4.71 4.71 35.39 5.36
651 5357 6.690098 TGATGTCGACGAAATAAACTAGCTAC 59.310 38.462 11.62 0.00 0.00 3.58
655 5361 5.051641 GGCTGATGTCGACGAAATAAACTAG 60.052 44.000 11.62 0.00 0.00 2.57
658 5365 3.242316 GGGCTGATGTCGACGAAATAAAC 60.242 47.826 11.62 0.00 0.00 2.01
667 5374 0.460284 ATCGTTGGGCTGATGTCGAC 60.460 55.000 9.11 9.11 0.00 4.20
668 5375 1.107945 TATCGTTGGGCTGATGTCGA 58.892 50.000 0.00 0.00 0.00 4.20
676 5383 1.271379 ACTGCTTTGTATCGTTGGGCT 60.271 47.619 0.00 0.00 0.00 5.19
682 5389 5.807520 CAGTATCTTGACTGCTTTGTATCGT 59.192 40.000 0.00 0.00 40.42 3.73
705 5412 7.930865 TGCAGTATAAATATGCAGTATGTGACA 59.069 33.333 0.00 0.00 44.56 3.58
716 5423 6.390987 GTACGGAGTGCAGTATAAATATGC 57.609 41.667 0.00 0.00 45.73 3.14
775 5770 4.196193 TCAACAAAAAGGTCGACACTCAT 58.804 39.130 18.91 2.65 0.00 2.90
800 5795 5.105716 GGTGTTAGCAGACTCTAATCTCACA 60.106 44.000 0.00 0.00 30.77 3.58
801 5796 5.344884 GGTGTTAGCAGACTCTAATCTCAC 58.655 45.833 0.00 0.00 31.92 3.51
802 5797 4.096532 CGGTGTTAGCAGACTCTAATCTCA 59.903 45.833 0.00 0.00 31.92 3.27
803 5798 4.602995 CGGTGTTAGCAGACTCTAATCTC 58.397 47.826 0.00 0.00 31.92 2.75
804 5799 3.181485 GCGGTGTTAGCAGACTCTAATCT 60.181 47.826 0.00 0.00 31.92 2.40
805 5800 3.117046 GCGGTGTTAGCAGACTCTAATC 58.883 50.000 0.00 0.00 31.92 1.75
806 5801 2.496070 TGCGGTGTTAGCAGACTCTAAT 59.504 45.455 0.00 0.00 40.01 1.73
807 5802 1.890489 TGCGGTGTTAGCAGACTCTAA 59.110 47.619 0.00 0.00 40.01 2.10
808 5803 1.541379 TGCGGTGTTAGCAGACTCTA 58.459 50.000 0.00 0.00 40.01 2.43
809 5804 0.679505 TTGCGGTGTTAGCAGACTCT 59.320 50.000 0.00 0.00 46.01 3.24
810 5805 1.508632 TTTGCGGTGTTAGCAGACTC 58.491 50.000 0.00 0.00 46.01 3.36
821 5816 3.060272 CAGATCTAGCGTAATTTGCGGTG 60.060 47.826 19.44 10.72 40.39 4.94
843 5838 3.324108 TGTGTAACCCCCGAGGCC 61.324 66.667 0.00 0.00 40.58 5.19
906 5939 2.158711 ACTGGGTGTGCATCCATCTATG 60.159 50.000 4.46 0.00 41.53 2.23
930 5963 1.575244 TGATCAGTGCGAGCTAATGC 58.425 50.000 0.00 0.00 40.05 3.56
1197 6230 1.979155 CAGCTCCCTGACCTCGTCA 60.979 63.158 0.00 0.00 41.77 4.35
1249 6282 1.134670 GGAGCCTTCGACACTTGCTAT 60.135 52.381 0.00 0.00 31.23 2.97
1334 6367 0.101939 CTTACGACGAGCCTTACCCC 59.898 60.000 0.00 0.00 0.00 4.95
1338 6371 2.793585 CGCAATCTTACGACGAGCCTTA 60.794 50.000 0.00 0.00 0.00 2.69
1342 6375 1.253034 CTTCGCAATCTTACGACGAGC 59.747 52.381 0.00 0.00 38.17 5.03
1404 6437 2.181021 CCGTACCTGTCACGCCTC 59.819 66.667 0.00 0.00 38.07 4.70
1425 6458 3.275617 AGATTAGCAACCGCACCATTA 57.724 42.857 0.00 0.00 42.27 1.90
1459 6492 1.885163 AAGCGAGGGTCAACGGTAGG 61.885 60.000 0.00 0.00 39.23 3.18
1477 6510 2.951642 CCTCTTTGAACAGAGCCAACAA 59.048 45.455 0.00 0.00 39.33 2.83
1529 6562 2.832129 AGCTTCTTGGTTATCTCGTCCA 59.168 45.455 0.00 0.00 0.00 4.02
1620 6654 0.032540 CAGCTGTTTTGCCAAGTCCC 59.967 55.000 5.25 0.00 0.00 4.46
1661 6695 5.845103 TGAGCATGAATTTTTCTTGAAGCA 58.155 33.333 0.00 0.00 37.08 3.91
1787 6821 2.867624 TGAGCTGCTTTTCATCCAACT 58.132 42.857 2.53 0.00 0.00 3.16
1822 6856 8.038944 TGCGTACCTCTTATTCTCAAGTAATTT 58.961 33.333 0.00 0.00 0.00 1.82
1903 6941 7.517417 CGCTATACTTCCTGAATGTCAATGAAC 60.517 40.741 0.00 0.00 0.00 3.18
1929 6967 9.708222 CTCAATTGTTATTAGTGACAGCATTAC 57.292 33.333 5.13 0.00 0.00 1.89
1930 6968 8.397906 GCTCAATTGTTATTAGTGACAGCATTA 58.602 33.333 5.13 0.00 0.00 1.90
1936 6974 5.414454 GGGTGCTCAATTGTTATTAGTGACA 59.586 40.000 5.13 0.00 0.00 3.58
1937 6975 5.414454 TGGGTGCTCAATTGTTATTAGTGAC 59.586 40.000 5.13 0.00 0.00 3.67
1949 6987 3.159213 TCATGTTCTGGGTGCTCAATT 57.841 42.857 0.00 0.00 0.00 2.32
1977 7017 9.864034 GTCAACACACTATATCATTTATTTCCG 57.136 33.333 0.00 0.00 0.00 4.30
2030 7071 4.098960 ACGGAAAGATGAACGGCTATTCTA 59.901 41.667 0.00 0.00 0.00 2.10
2036 7077 2.754946 TAACGGAAAGATGAACGGCT 57.245 45.000 0.00 0.00 0.00 5.52
2040 7081 6.417191 TGCACTAATAACGGAAAGATGAAC 57.583 37.500 0.00 0.00 0.00 3.18
2050 7091 8.702163 TGATGATACATATGCACTAATAACGG 57.298 34.615 1.58 0.00 0.00 4.44
2136 7183 6.122850 TCAAGACACAACTCAAAGACAATG 57.877 37.500 0.00 0.00 0.00 2.82
2224 7271 9.112725 CCAGATGATACAAACATGAACAGATTA 57.887 33.333 0.00 0.00 0.00 1.75
2230 7277 5.882557 AGACCCAGATGATACAAACATGAAC 59.117 40.000 0.00 0.00 0.00 3.18
2238 7285 5.497464 TGTTCAAGACCCAGATGATACAA 57.503 39.130 0.00 0.00 0.00 2.41
2282 7329 7.831193 AGTCTACATACTTTTGATGGAGCATTT 59.169 33.333 0.00 0.00 35.51 2.32
2361 7408 8.976353 TGGTCCTGCATAAAATAAACAATACAT 58.024 29.630 0.00 0.00 0.00 2.29
2363 7410 9.463443 GATGGTCCTGCATAAAATAAACAATAC 57.537 33.333 0.00 0.00 0.00 1.89
2364 7411 8.637986 GGATGGTCCTGCATAAAATAAACAATA 58.362 33.333 0.00 0.00 32.53 1.90
2365 7412 7.500141 GGATGGTCCTGCATAAAATAAACAAT 58.500 34.615 0.00 0.00 32.53 2.71
2366 7413 6.872920 GGATGGTCCTGCATAAAATAAACAA 58.127 36.000 0.00 0.00 32.53 2.83
2367 7414 6.463995 GGATGGTCCTGCATAAAATAAACA 57.536 37.500 0.00 0.00 32.53 2.83
2436 7483 9.582648 AGTTTACCAATGTTATCTTACTGGTTT 57.417 29.630 0.00 0.00 38.17 3.27
2564 7615 1.093159 GCAGCCATCTTGAAGACCAG 58.907 55.000 0.00 0.00 0.00 4.00
2573 7624 4.801164 AGAAAAGATATGGCAGCCATCTT 58.199 39.130 31.09 25.08 40.74 2.40
2578 7629 7.175641 ACATGTATTAGAAAAGATATGGCAGCC 59.824 37.037 3.66 3.66 31.77 4.85
2593 7644 9.448438 AAACTTGTGCAGAATACATGTATTAGA 57.552 29.630 27.01 10.67 35.98 2.10
2684 7736 9.964354 TTATATTCCTTGATTCTACATCCCATG 57.036 33.333 0.00 0.00 0.00 3.66
2698 7750 8.461222 CAAAGCACAACTGATTATATTCCTTGA 58.539 33.333 8.21 0.00 0.00 3.02
2701 7753 8.579850 TTCAAAGCACAACTGATTATATTCCT 57.420 30.769 0.00 0.00 0.00 3.36
2706 7758 9.330063 CTATCCTTCAAAGCACAACTGATTATA 57.670 33.333 0.00 0.00 0.00 0.98
2761 7813 1.126296 GGCGACTTTCAAACTACGAGC 59.874 52.381 0.00 0.00 0.00 5.03
2773 7825 0.602905 CCGGACTTTCTGGCGACTTT 60.603 55.000 0.00 0.00 35.89 2.66
2881 7933 6.297080 AGATATCTCAAGCGGATGATCAAT 57.703 37.500 0.00 0.00 0.00 2.57
2905 7957 8.109634 ACCACCACATCTCTGTATAATCTTTTT 58.890 33.333 0.00 0.00 33.14 1.94
2978 8030 5.094387 AGACCTTAGACCAATCCTCTTTCA 58.906 41.667 0.00 0.00 0.00 2.69
3147 8199 6.183360 ACCACTTCCAGATCAAAGTTTCTTTG 60.183 38.462 13.86 13.86 33.53 2.77
3208 8260 2.105477 TCTCTCCAAGCTCATATTGCCC 59.895 50.000 0.00 0.00 0.00 5.36
3283 8335 2.079158 AGTCACGAAACATGAGCCATG 58.921 47.619 0.00 12.06 46.18 3.66
3315 8367 5.684550 TCATATCAAGCACAAGATCATGC 57.315 39.130 8.20 8.20 42.39 4.06
3398 8450 3.865745 ACGAGAATTACTTTGGCGAGATG 59.134 43.478 0.00 0.00 0.00 2.90
3403 8455 3.518590 ACCTACGAGAATTACTTTGGCG 58.481 45.455 0.00 0.00 0.00 5.69
3415 8467 2.029623 GTGGATGGCTAACCTACGAGA 58.970 52.381 0.00 0.00 36.63 4.04
3506 8558 2.642427 TCACATGGAAATCACATCCGG 58.358 47.619 0.00 0.00 39.98 5.14
3596 8648 5.397221 CCAAGATGGTCCAGATGATAAGTGT 60.397 44.000 0.00 0.00 31.35 3.55
3599 8651 4.349048 TCCCAAGATGGTCCAGATGATAAG 59.651 45.833 0.00 0.00 35.17 1.73
3716 8774 5.473846 GGCAATTCTTTTATCCTAGTAGCCC 59.526 44.000 0.00 0.00 0.00 5.19
3719 8777 8.506168 TTGTGGCAATTCTTTTATCCTAGTAG 57.494 34.615 0.00 0.00 0.00 2.57
3785 8849 2.673368 CCAACTATTCCTTCAGCGACAC 59.327 50.000 0.00 0.00 0.00 3.67
3786 8850 2.935238 GCCAACTATTCCTTCAGCGACA 60.935 50.000 0.00 0.00 0.00 4.35
3807 8871 0.108041 GGTTCCCCAGCAAATGCATG 60.108 55.000 0.00 3.39 45.16 4.06
3859 8923 0.034059 AACTCAGGAGACCAAGTGCG 59.966 55.000 2.79 0.00 0.00 5.34
3860 8924 1.876156 CAAACTCAGGAGACCAAGTGC 59.124 52.381 2.79 0.00 0.00 4.40
3921 8985 7.556275 TCATCCAAGTCTTTGTAAGTGAAAAGT 59.444 33.333 0.00 0.00 35.38 2.66
3925 8989 7.334421 GCTATCATCCAAGTCTTTGTAAGTGAA 59.666 37.037 0.00 0.00 32.21 3.18
3929 8993 6.115446 TGGCTATCATCCAAGTCTTTGTAAG 58.885 40.000 0.00 0.00 32.21 2.34
3931 8995 5.396772 CCTGGCTATCATCCAAGTCTTTGTA 60.397 44.000 0.00 0.00 32.41 2.41
3932 8996 4.521146 CTGGCTATCATCCAAGTCTTTGT 58.479 43.478 0.00 0.00 32.41 2.83
3934 8998 3.525199 ACCTGGCTATCATCCAAGTCTTT 59.475 43.478 0.00 0.00 32.41 2.52
3935 8999 3.118112 CACCTGGCTATCATCCAAGTCTT 60.118 47.826 0.00 0.00 32.41 3.01
3936 9000 2.437281 CACCTGGCTATCATCCAAGTCT 59.563 50.000 0.00 0.00 32.41 3.24
3937 9001 2.435805 TCACCTGGCTATCATCCAAGTC 59.564 50.000 0.00 0.00 32.41 3.01
4016 9086 6.428159 GGGTCCAATACTCACATTAATAGCAG 59.572 42.308 0.00 0.00 0.00 4.24
4019 9089 6.837312 TGGGGTCCAATACTCACATTAATAG 58.163 40.000 0.00 0.00 0.00 1.73
4020 9090 6.833346 TGGGGTCCAATACTCACATTAATA 57.167 37.500 0.00 0.00 0.00 0.98
4021 9091 5.725551 TGGGGTCCAATACTCACATTAAT 57.274 39.130 0.00 0.00 0.00 1.40
4022 9092 5.505780 CTTGGGGTCCAATACTCACATTAA 58.494 41.667 0.00 0.00 43.07 1.40
4024 9094 3.309121 CCTTGGGGTCCAATACTCACATT 60.309 47.826 0.00 0.00 43.07 2.71
4097 9167 0.321564 CGGCAACATGTCCTTCTCCA 60.322 55.000 0.00 0.00 0.00 3.86
4161 9231 4.520492 GCCTTCACTTCCTTCAGATTGAAA 59.480 41.667 0.00 0.00 35.73 2.69
4225 9295 2.164624 ACAGATCAGTCAACCGTAGAGC 59.835 50.000 0.00 0.00 0.00 4.09
4264 9334 1.002544 GTCTGGGAGAAAGTCCTGTGG 59.997 57.143 0.00 0.00 46.06 4.17
4266 9336 0.969894 CGTCTGGGAGAAAGTCCTGT 59.030 55.000 0.00 0.00 46.06 4.00
4320 9390 1.738099 CAGCGGTGCAGGTGTACTC 60.738 63.158 0.00 0.00 35.15 2.59
4393 9463 2.079158 ACGCTTCAACTGATCCACATG 58.921 47.619 0.00 0.00 0.00 3.21
4395 9465 1.069978 TCACGCTTCAACTGATCCACA 59.930 47.619 0.00 0.00 0.00 4.17
4418 9488 4.565022 ACCAAACTCAAACACAAAGTTGG 58.435 39.130 0.00 0.00 41.19 3.77
4421 9491 4.705023 AGCTACCAAACTCAAACACAAAGT 59.295 37.500 0.00 0.00 0.00 2.66
4481 9551 6.373759 TCTTGAGCTGTACCTATCAGGATAA 58.626 40.000 0.00 0.00 37.67 1.75
4483 9553 4.809193 TCTTGAGCTGTACCTATCAGGAT 58.191 43.478 0.00 0.00 37.67 3.24
4487 9557 4.096532 CGTTCTCTTGAGCTGTACCTATCA 59.903 45.833 0.00 0.00 0.00 2.15
4488 9558 4.335874 TCGTTCTCTTGAGCTGTACCTATC 59.664 45.833 0.00 0.00 0.00 2.08
4489 9559 4.270834 TCGTTCTCTTGAGCTGTACCTAT 58.729 43.478 0.00 0.00 0.00 2.57
4495 9565 1.621992 TCCTCGTTCTCTTGAGCTGT 58.378 50.000 0.00 0.00 0.00 4.40
4509 9579 1.081892 CAACCACAGCTTCATCCTCG 58.918 55.000 0.00 0.00 0.00 4.63
4547 9617 2.340328 GGACGGTTGGGATGTTGGC 61.340 63.158 0.00 0.00 0.00 4.52
4587 9657 8.425577 ACAAGTATGCATGTACTTACAATCTC 57.574 34.615 13.26 0.00 41.65 2.75
4588 9658 9.534565 CTACAAGTATGCATGTACTTACAATCT 57.465 33.333 13.26 0.00 41.65 2.40
4591 9661 7.277760 CAGCTACAAGTATGCATGTACTTACAA 59.722 37.037 13.26 3.47 41.65 2.41
4611 9681 6.613755 TGAAAACCACTTAAACTCAGCTAC 57.386 37.500 0.00 0.00 0.00 3.58
4627 9697 6.555315 CAGGATGTATGTAAAGCTGAAAACC 58.445 40.000 0.00 0.00 0.00 3.27
4668 9738 5.071788 GGACATATTGGACATCTCCCAGTTA 59.928 44.000 0.00 0.00 35.34 2.24
4759 9842 9.649167 GTAGTAGGTAACATTAACTGTGTTGAT 57.351 33.333 0.00 0.00 39.88 2.57
4772 9855 8.426569 TGGAAAGTAAGTGTAGTAGGTAACAT 57.573 34.615 0.00 0.00 41.41 2.71
4822 9907 5.163764 TGCAGACAAATAATAGTTGAAGCGG 60.164 40.000 7.49 0.00 0.00 5.52
4881 9967 4.743644 GGTGCATCGATTAAGTAGTGGTAC 59.256 45.833 0.00 0.00 0.00 3.34
4974 10070 3.531538 GGACGAAAACCTGATAGCATCA 58.468 45.455 0.00 0.00 37.76 3.07
5231 10352 0.321564 TTCTGACGCCCTCACCATTG 60.322 55.000 0.00 0.00 0.00 2.82
5234 10355 1.070786 GTTTCTGACGCCCTCACCA 59.929 57.895 0.00 0.00 0.00 4.17
5235 10356 2.027625 CGTTTCTGACGCCCTCACC 61.028 63.158 0.00 0.00 45.86 4.02
5236 10357 3.550656 CGTTTCTGACGCCCTCAC 58.449 61.111 0.00 0.00 45.86 3.51
5244 10365 4.905269 ACTGTAAAGCAAACGTTTCTGAC 58.095 39.130 11.37 12.61 0.00 3.51
5245 10366 4.873827 AGACTGTAAAGCAAACGTTTCTGA 59.126 37.500 11.37 1.71 0.00 3.27
5246 10367 5.156804 AGACTGTAAAGCAAACGTTTCTG 57.843 39.130 11.37 2.70 0.00 3.02
5247 10368 4.272748 GGAGACTGTAAAGCAAACGTTTCT 59.727 41.667 11.37 8.72 0.00 2.52
5248 10369 4.034742 TGGAGACTGTAAAGCAAACGTTTC 59.965 41.667 11.37 6.47 0.00 2.78
5249 10370 3.942748 TGGAGACTGTAAAGCAAACGTTT 59.057 39.130 7.96 7.96 0.00 3.60
5250 10371 3.311596 GTGGAGACTGTAAAGCAAACGTT 59.688 43.478 0.00 0.00 0.00 3.99
5293 10414 1.134788 GGACCGAGGGAGTACACATTG 60.135 57.143 0.00 0.00 0.00 2.82
5299 10420 0.890683 TTTTCGGACCGAGGGAGTAC 59.109 55.000 17.51 0.00 37.14 2.73
5300 10421 1.856629 ATTTTCGGACCGAGGGAGTA 58.143 50.000 17.51 0.00 37.14 2.59
5301 10422 1.479730 GTATTTTCGGACCGAGGGAGT 59.520 52.381 17.51 6.92 37.14 3.85
5302 10423 1.755380 AGTATTTTCGGACCGAGGGAG 59.245 52.381 17.51 0.00 37.14 4.30
5303 10424 1.856629 AGTATTTTCGGACCGAGGGA 58.143 50.000 17.51 7.50 37.14 4.20
5304 10425 2.277084 CAAGTATTTTCGGACCGAGGG 58.723 52.381 17.51 0.00 37.14 4.30
5305 10426 2.928116 GACAAGTATTTTCGGACCGAGG 59.072 50.000 17.51 3.47 37.14 4.63
5306 10427 2.928116 GGACAAGTATTTTCGGACCGAG 59.072 50.000 17.51 5.32 37.14 4.63
5307 10428 2.671914 CGGACAAGTATTTTCGGACCGA 60.672 50.000 13.88 13.88 40.16 4.69
5308 10429 1.657094 CGGACAAGTATTTTCGGACCG 59.343 52.381 7.84 7.84 0.00 4.79
5309 10430 2.928116 CTCGGACAAGTATTTTCGGACC 59.072 50.000 0.00 0.00 0.00 4.46
5310 10431 3.841643 TCTCGGACAAGTATTTTCGGAC 58.158 45.455 0.00 0.00 0.00 4.79
5311 10432 4.524316 TTCTCGGACAAGTATTTTCGGA 57.476 40.909 0.00 0.00 0.00 4.55
5312 10433 5.796350 ATTTCTCGGACAAGTATTTTCGG 57.204 39.130 0.00 0.00 0.00 4.30
5313 10434 7.751047 TCTATTTCTCGGACAAGTATTTTCG 57.249 36.000 0.00 0.00 0.00 3.46
5314 10435 9.099454 ACATCTATTTCTCGGACAAGTATTTTC 57.901 33.333 0.00 0.00 0.00 2.29
5317 10438 9.915629 GATACATCTATTTCTCGGACAAGTATT 57.084 33.333 0.00 0.00 0.00 1.89
5318 10439 9.303116 AGATACATCTATTTCTCGGACAAGTAT 57.697 33.333 0.00 0.00 34.85 2.12
5319 10440 8.693120 AGATACATCTATTTCTCGGACAAGTA 57.307 34.615 0.00 0.00 34.85 2.24
5320 10441 7.589958 AGATACATCTATTTCTCGGACAAGT 57.410 36.000 0.00 0.00 34.85 3.16
5321 10442 9.004717 TCTAGATACATCTATTTCTCGGACAAG 57.995 37.037 0.00 0.00 38.60 3.16
5322 10443 8.919777 TCTAGATACATCTATTTCTCGGACAA 57.080 34.615 0.00 0.00 38.60 3.18
5323 10444 8.951243 CATCTAGATACATCTATTTCTCGGACA 58.049 37.037 4.54 0.00 38.60 4.02
5324 10445 8.952278 ACATCTAGATACATCTATTTCTCGGAC 58.048 37.037 4.54 0.00 38.60 4.79
5377 10498 9.104965 CGGAAATACTTGTTGTAGAAATGGATA 57.895 33.333 0.00 0.00 34.24 2.59
5378 10499 7.067008 CCGGAAATACTTGTTGTAGAAATGGAT 59.933 37.037 0.00 0.00 34.24 3.41
5379 10500 6.373216 CCGGAAATACTTGTTGTAGAAATGGA 59.627 38.462 0.00 0.00 34.24 3.41
5380 10501 6.373216 TCCGGAAATACTTGTTGTAGAAATGG 59.627 38.462 0.00 0.00 34.24 3.16
5381 10502 7.241376 GTCCGGAAATACTTGTTGTAGAAATG 58.759 38.462 5.23 0.00 34.24 2.32
5382 10503 6.091713 CGTCCGGAAATACTTGTTGTAGAAAT 59.908 38.462 5.23 0.00 34.24 2.17
5383 10504 5.406175 CGTCCGGAAATACTTGTTGTAGAAA 59.594 40.000 5.23 0.00 34.24 2.52
5384 10505 4.925054 CGTCCGGAAATACTTGTTGTAGAA 59.075 41.667 5.23 0.00 34.24 2.10
5385 10506 4.487948 CGTCCGGAAATACTTGTTGTAGA 58.512 43.478 5.23 0.00 34.24 2.59
5386 10507 3.615496 CCGTCCGGAAATACTTGTTGTAG 59.385 47.826 5.23 0.00 37.50 2.74
5387 10508 3.257873 TCCGTCCGGAAATACTTGTTGTA 59.742 43.478 5.23 0.00 42.05 2.41
5388 10509 2.037511 TCCGTCCGGAAATACTTGTTGT 59.962 45.455 5.23 0.00 42.05 3.32
5389 10510 2.671396 CTCCGTCCGGAAATACTTGTTG 59.329 50.000 5.23 0.00 44.66 3.33
5390 10511 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
5391 10512 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5392 10513 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5393 10514 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5394 10515 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5395 10516 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5396 10517 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5397 10518 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5398 10519 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
5399 10520 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
5400 10521 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
5401 10522 1.455217 ATGTACTCCCTCCGTCCGG 60.455 63.158 0.00 0.00 0.00 5.14
5402 10523 1.035932 ACATGTACTCCCTCCGTCCG 61.036 60.000 0.00 0.00 0.00 4.79
5403 10524 1.192428 AACATGTACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
5404 10525 3.329929 AAAACATGTACTCCCTCCGTC 57.670 47.619 0.00 0.00 0.00 4.79
5405 10526 3.836562 ACTAAAACATGTACTCCCTCCGT 59.163 43.478 0.00 0.00 0.00 4.69
5406 10527 4.467198 ACTAAAACATGTACTCCCTCCG 57.533 45.455 0.00 0.00 0.00 4.63
5407 10528 4.395231 GCAACTAAAACATGTACTCCCTCC 59.605 45.833 0.00 0.00 0.00 4.30
5408 10529 4.092968 CGCAACTAAAACATGTACTCCCTC 59.907 45.833 0.00 0.00 0.00 4.30
5409 10530 4.000988 CGCAACTAAAACATGTACTCCCT 58.999 43.478 0.00 0.00 0.00 4.20
5410 10531 3.749609 ACGCAACTAAAACATGTACTCCC 59.250 43.478 0.00 0.00 0.00 4.30
5411 10532 5.352643 AACGCAACTAAAACATGTACTCC 57.647 39.130 0.00 0.00 0.00 3.85
5412 10533 7.570161 ACTAAACGCAACTAAAACATGTACTC 58.430 34.615 0.00 0.00 0.00 2.59
5413 10534 7.486802 ACTAAACGCAACTAAAACATGTACT 57.513 32.000 0.00 0.00 0.00 2.73
5424 10545 4.639310 TGGGAAACAAACTAAACGCAACTA 59.361 37.500 0.00 0.00 0.00 2.24
5427 10548 3.735514 GCTGGGAAACAAACTAAACGCAA 60.736 43.478 0.00 0.00 0.00 4.85
5453 10574 7.093509 TGTGAGGATACAAACTGCAGTAGAATA 60.094 37.037 22.01 10.86 41.41 1.75
5548 10671 1.218047 CGGTGATGGAGAAGCCGAA 59.782 57.895 0.00 0.00 44.57 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.