Multiple sequence alignment - TraesCS3B01G096700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G096700 chr3B 100.000 3680 0 0 1 3680 64537085 64540764 0.000000e+00 6796.0
1 TraesCS3B01G096700 chr3B 88.877 899 57 33 2800 3680 461736109 461736982 0.000000e+00 1066.0
2 TraesCS3B01G096700 chr3B 85.962 577 51 12 1 574 563318593 563318044 1.140000e-164 590.0
3 TraesCS3B01G096700 chr3B 86.199 442 46 11 141 574 804231131 804230697 7.200000e-127 464.0
4 TraesCS3B01G096700 chr3B 90.377 239 18 3 583 817 584013084 584013321 3.570000e-80 309.0
5 TraesCS3B01G096700 chr3B 91.071 224 19 1 594 816 563317853 563317630 5.970000e-78 302.0
6 TraesCS3B01G096700 chr2A 89.933 1927 136 24 816 2707 154423022 154421119 0.000000e+00 2431.0
7 TraesCS3B01G096700 chr2A 82.211 1366 235 8 1257 2618 155074674 155073313 0.000000e+00 1170.0
8 TraesCS3B01G096700 chr2A 91.995 812 46 6 1 810 256193635 256194429 0.000000e+00 1122.0
9 TraesCS3B01G096700 chr2A 79.757 494 64 17 3127 3611 719204125 719203659 3.540000e-85 326.0
10 TraesCS3B01G096700 chr2A 86.364 176 23 1 2792 2967 719204297 719204123 1.350000e-44 191.0
11 TraesCS3B01G096700 chr2B 91.069 1814 120 21 921 2706 207481921 207483720 0.000000e+00 2414.0
12 TraesCS3B01G096700 chr2B 94.254 818 44 3 1 816 753102372 753101556 0.000000e+00 1247.0
13 TraesCS3B01G096700 chr2B 89.407 236 21 4 584 816 387626252 387626018 9.990000e-76 294.0
14 TraesCS3B01G096700 chr2D 90.513 1834 132 18 902 2704 147953339 147955161 0.000000e+00 2385.0
15 TraesCS3B01G096700 chr2D 93.243 814 40 7 12 817 593133136 593132330 0.000000e+00 1184.0
16 TraesCS3B01G096700 chr2D 81.991 1366 238 8 1257 2618 147426250 147427611 0.000000e+00 1153.0
17 TraesCS3B01G096700 chr2D 81.504 492 58 15 3127 3610 429099583 429100049 1.250000e-99 374.0
18 TraesCS3B01G096700 chr2D 85.714 175 24 1 2793 2967 429099412 429099585 2.260000e-42 183.0
19 TraesCS3B01G096700 chr2D 97.561 41 1 0 3634 3674 429100053 429100093 1.830000e-08 71.3
20 TraesCS3B01G096700 chr1D 86.030 1675 191 25 1038 2681 483972592 483974254 0.000000e+00 1757.0
21 TraesCS3B01G096700 chr1A 85.672 1675 205 22 1039 2685 580988256 580989923 0.000000e+00 1731.0
22 TraesCS3B01G096700 chr1B 85.395 1609 199 17 1053 2648 674004742 674003157 0.000000e+00 1637.0
23 TraesCS3B01G096700 chr1B 85.120 1586 212 18 1088 2656 673992230 673993808 0.000000e+00 1600.0
24 TraesCS3B01G096700 chr1B 80.933 493 59 19 3127 3610 200862705 200863171 1.260000e-94 357.0
25 TraesCS3B01G096700 chr1B 80.730 493 60 19 3127 3610 200870961 200871427 5.850000e-93 351.0
26 TraesCS3B01G096700 chr1B 90.043 231 18 3 584 810 583445296 583445525 9.990000e-76 294.0
27 TraesCS3B01G096700 chr7B 94.634 820 40 4 1 817 442967662 442966844 0.000000e+00 1267.0
28 TraesCS3B01G096700 chr7B 85.034 441 52 10 141 574 421703926 421704359 1.570000e-118 436.0
29 TraesCS3B01G096700 chr7B 90.000 230 19 4 584 810 318871803 318872031 9.990000e-76 294.0
30 TraesCS3B01G096700 chr6B 84.708 582 68 15 1 574 623452053 623452621 2.480000e-156 562.0
31 TraesCS3B01G096700 chr6B 84.952 525 59 12 51 574 68387788 68387283 7.050000e-142 514.0
32 TraesCS3B01G096700 chr6A 87.104 442 43 10 141 574 6274630 6274195 4.270000e-134 488.0
33 TraesCS3B01G096700 chr7D 81.542 493 56 19 3127 3610 115081328 115080862 1.250000e-99 374.0
34 TraesCS3B01G096700 chr7D 97.076 171 4 1 2963 3132 459392091 459391921 1.670000e-73 287.0
35 TraesCS3B01G096700 chr7D 96.000 175 6 1 2964 3137 500255329 500255155 2.160000e-72 283.0
36 TraesCS3B01G096700 chr7D 95.506 178 7 1 2962 3138 522504691 522504868 2.160000e-72 283.0
37 TraesCS3B01G096700 chr7D 86.782 174 23 0 2794 2967 115081499 115081326 1.040000e-45 195.0
38 TraesCS3B01G096700 chr7D 97.561 41 1 0 3634 3674 115080858 115080818 1.830000e-08 71.3
39 TraesCS3B01G096700 chr7A 80.933 493 59 16 3127 3610 685289810 685289344 1.260000e-94 357.0
40 TraesCS3B01G096700 chr7A 84.438 347 47 6 3188 3533 671172769 671172429 5.890000e-88 335.0
41 TraesCS3B01G096700 chr7A 85.612 278 32 5 3127 3404 47520167 47520436 6.010000e-73 285.0
42 TraesCS3B01G096700 chr7A 84.892 278 34 6 3127 3404 683635115 683635384 1.300000e-69 274.0
43 TraesCS3B01G096700 chr4B 80.325 493 62 19 3127 3610 199208115 199207649 1.270000e-89 340.0
44 TraesCS3B01G096700 chr4B 86.782 174 22 1 2794 2967 199208285 199208113 3.750000e-45 193.0
45 TraesCS3B01G096700 chr5A 80.081 492 62 19 3127 3609 569785852 569785388 2.120000e-87 333.0
46 TraesCS3B01G096700 chr5A 85.405 185 25 2 2783 2967 569786032 569785850 1.350000e-44 191.0
47 TraesCS3B01G096700 chr5A 97.561 41 1 0 3634 3674 569785384 569785344 1.830000e-08 71.3
48 TraesCS3B01G096700 chr3D 81.865 386 45 11 3233 3610 135750806 135750438 5.970000e-78 302.0
49 TraesCS3B01G096700 chr3D 87.356 174 22 0 2794 2967 135751031 135750858 2.240000e-47 200.0
50 TraesCS3B01G096700 chr3D 97.561 41 1 0 3634 3674 135750434 135750394 1.830000e-08 71.3
51 TraesCS3B01G096700 chr5D 97.633 169 3 1 2962 3129 100549374 100549542 4.650000e-74 289.0
52 TraesCS3B01G096700 chr5D 95.480 177 6 2 2963 3137 331919529 331919353 7.780000e-72 281.0
53 TraesCS3B01G096700 chr5D 95.000 180 7 2 2963 3140 420206040 420206219 7.780000e-72 281.0
54 TraesCS3B01G096700 chr4D 96.552 174 4 2 2961 3133 75782222 75782050 1.670000e-73 287.0
55 TraesCS3B01G096700 chr6D 96.532 173 4 2 2962 3132 206560269 206560441 6.010000e-73 285.0
56 TraesCS3B01G096700 chr5B 96.532 173 4 2 2962 3133 575812973 575812802 6.010000e-73 285.0
57 TraesCS3B01G096700 chr5B 80.739 379 48 13 3233 3603 166609484 166609123 4.680000e-69 272.0
58 TraesCS3B01G096700 chr5B 92.935 184 11 2 2785 2967 50923659 50923477 2.180000e-67 267.0
59 TraesCS3B01G096700 chr5B 90.341 176 14 1 1 176 548446603 548446775 1.030000e-55 228.0
60 TraesCS3B01G096700 chr5B 86.286 175 23 1 2793 2967 166615864 166615691 4.850000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G096700 chr3B 64537085 64540764 3679 False 6796.000000 6796 100.000000 1 3680 1 chr3B.!!$F1 3679
1 TraesCS3B01G096700 chr3B 461736109 461736982 873 False 1066.000000 1066 88.877000 2800 3680 1 chr3B.!!$F2 880
2 TraesCS3B01G096700 chr3B 563317630 563318593 963 True 446.000000 590 88.516500 1 816 2 chr3B.!!$R2 815
3 TraesCS3B01G096700 chr2A 154421119 154423022 1903 True 2431.000000 2431 89.933000 816 2707 1 chr2A.!!$R1 1891
4 TraesCS3B01G096700 chr2A 155073313 155074674 1361 True 1170.000000 1170 82.211000 1257 2618 1 chr2A.!!$R2 1361
5 TraesCS3B01G096700 chr2A 256193635 256194429 794 False 1122.000000 1122 91.995000 1 810 1 chr2A.!!$F1 809
6 TraesCS3B01G096700 chr2A 719203659 719204297 638 True 258.500000 326 83.060500 2792 3611 2 chr2A.!!$R3 819
7 TraesCS3B01G096700 chr2B 207481921 207483720 1799 False 2414.000000 2414 91.069000 921 2706 1 chr2B.!!$F1 1785
8 TraesCS3B01G096700 chr2B 753101556 753102372 816 True 1247.000000 1247 94.254000 1 816 1 chr2B.!!$R2 815
9 TraesCS3B01G096700 chr2D 147953339 147955161 1822 False 2385.000000 2385 90.513000 902 2704 1 chr2D.!!$F2 1802
10 TraesCS3B01G096700 chr2D 593132330 593133136 806 True 1184.000000 1184 93.243000 12 817 1 chr2D.!!$R1 805
11 TraesCS3B01G096700 chr2D 147426250 147427611 1361 False 1153.000000 1153 81.991000 1257 2618 1 chr2D.!!$F1 1361
12 TraesCS3B01G096700 chr2D 429099412 429100093 681 False 209.433333 374 88.259667 2793 3674 3 chr2D.!!$F3 881
13 TraesCS3B01G096700 chr1D 483972592 483974254 1662 False 1757.000000 1757 86.030000 1038 2681 1 chr1D.!!$F1 1643
14 TraesCS3B01G096700 chr1A 580988256 580989923 1667 False 1731.000000 1731 85.672000 1039 2685 1 chr1A.!!$F1 1646
15 TraesCS3B01G096700 chr1B 674003157 674004742 1585 True 1637.000000 1637 85.395000 1053 2648 1 chr1B.!!$R1 1595
16 TraesCS3B01G096700 chr1B 673992230 673993808 1578 False 1600.000000 1600 85.120000 1088 2656 1 chr1B.!!$F4 1568
17 TraesCS3B01G096700 chr7B 442966844 442967662 818 True 1267.000000 1267 94.634000 1 817 1 chr7B.!!$R1 816
18 TraesCS3B01G096700 chr6B 623452053 623452621 568 False 562.000000 562 84.708000 1 574 1 chr6B.!!$F1 573
19 TraesCS3B01G096700 chr6B 68387283 68387788 505 True 514.000000 514 84.952000 51 574 1 chr6B.!!$R1 523
20 TraesCS3B01G096700 chr7D 115080818 115081499 681 True 213.433333 374 88.628333 2794 3674 3 chr7D.!!$R3 880
21 TraesCS3B01G096700 chr4B 199207649 199208285 636 True 266.500000 340 83.553500 2794 3610 2 chr4B.!!$R1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
596 619 0.103937 ACCGTGGTTGCATTTTGGTG 59.896 50.0 0.00 0.0 0.0 4.17 F
1332 1435 0.036952 CAGACGTGCAGGTGGAGATT 60.037 55.0 18.18 0.0 0.0 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2512 0.107459 GATGAGCTCCTTCCACACCC 60.107 60.0 12.15 0.0 0.0 4.61 R
2791 3375 0.243907 CGCGGGCATACAGCTAGTAT 59.756 55.0 0.00 0.0 44.2 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 45 0.457035 CTGAACATTCCAATGGCCGG 59.543 55.000 0.00 0.00 40.70 6.13
186 206 4.281688 TCTCAAATTTTCAGCAAAGAGGGG 59.718 41.667 0.00 0.00 0.00 4.79
203 223 3.365472 AGGGGAAATTGGTGCTATTGAC 58.635 45.455 0.00 0.00 0.00 3.18
206 226 3.013921 GGAAATTGGTGCTATTGACCGA 58.986 45.455 0.00 0.00 36.12 4.69
224 244 6.903883 GACCGAAGTCAGAATATTGCTAAA 57.096 37.500 0.00 0.00 42.99 1.85
260 280 6.744537 GTGTAAGCTATGCAGAGAAAAACATG 59.255 38.462 13.69 0.00 0.00 3.21
272 292 6.581542 CAGAGAAAAACATGAAGTTGATGAGC 59.418 38.462 9.45 0.00 41.19 4.26
279 299 4.692625 ACATGAAGTTGATGAGCTGTGTAC 59.307 41.667 9.45 0.00 0.00 2.90
283 303 2.296190 AGTTGATGAGCTGTGTACGTGA 59.704 45.455 0.00 0.00 0.00 4.35
286 306 2.556622 TGATGAGCTGTGTACGTGAAGA 59.443 45.455 0.00 0.00 0.00 2.87
293 313 3.123621 GCTGTGTACGTGAAGATGAAAGG 59.876 47.826 0.00 0.00 0.00 3.11
319 339 4.947388 GCCAAGGGAATATACTGTGTTCAA 59.053 41.667 0.00 0.00 30.21 2.69
321 341 5.064707 CCAAGGGAATATACTGTGTTCAACG 59.935 44.000 0.00 0.00 30.21 4.10
333 353 1.065345 TGTTCAACGGTGACCTTGGAA 60.065 47.619 0.44 0.00 31.90 3.53
345 365 2.622942 GACCTTGGAAAGTGCATGTTGA 59.377 45.455 0.00 0.00 44.25 3.18
346 366 3.233507 ACCTTGGAAAGTGCATGTTGAT 58.766 40.909 0.00 0.00 44.25 2.57
351 371 4.009675 TGGAAAGTGCATGTTGATCCTAC 58.990 43.478 0.00 0.00 0.00 3.18
368 388 8.146053 TGATCCTACATAGACTTTCCTGAAAA 57.854 34.615 0.00 0.00 0.00 2.29
413 436 8.677148 TTGTTAGAGAAAATATCATAGTGGGC 57.323 34.615 0.00 0.00 0.00 5.36
418 441 7.293073 AGAGAAAATATCATAGTGGGCACAAT 58.707 34.615 0.00 0.00 0.00 2.71
453 476 5.902981 GCATTGCAATGTTTTGTACAGTTTG 59.097 36.000 33.67 10.64 40.83 2.93
458 481 5.005299 GCAATGTTTTGTACAGTTTGACCAC 59.995 40.000 0.00 0.00 40.83 4.16
459 482 4.343811 TGTTTTGTACAGTTTGACCACG 57.656 40.909 0.00 0.00 31.68 4.94
460 483 4.001652 TGTTTTGTACAGTTTGACCACGA 58.998 39.130 0.00 0.00 31.68 4.35
461 484 4.142859 TGTTTTGTACAGTTTGACCACGAC 60.143 41.667 0.00 0.00 31.68 4.34
462 485 3.530265 TTGTACAGTTTGACCACGACT 57.470 42.857 0.00 0.00 0.00 4.18
463 486 4.652421 TTGTACAGTTTGACCACGACTA 57.348 40.909 0.00 0.00 0.00 2.59
464 487 4.859304 TGTACAGTTTGACCACGACTAT 57.141 40.909 0.00 0.00 0.00 2.12
465 488 5.204409 TGTACAGTTTGACCACGACTATT 57.796 39.130 0.00 0.00 0.00 1.73
466 489 5.603596 TGTACAGTTTGACCACGACTATTT 58.396 37.500 0.00 0.00 0.00 1.40
467 490 6.050432 TGTACAGTTTGACCACGACTATTTT 58.950 36.000 0.00 0.00 0.00 1.82
468 491 6.539464 TGTACAGTTTGACCACGACTATTTTT 59.461 34.615 0.00 0.00 0.00 1.94
469 492 5.816919 ACAGTTTGACCACGACTATTTTTG 58.183 37.500 0.00 0.00 0.00 2.44
470 493 5.355910 ACAGTTTGACCACGACTATTTTTGT 59.644 36.000 0.00 0.00 0.00 2.83
471 494 5.907391 CAGTTTGACCACGACTATTTTTGTC 59.093 40.000 0.00 0.00 0.00 3.18
472 495 5.587043 AGTTTGACCACGACTATTTTTGTCA 59.413 36.000 0.00 0.00 34.37 3.58
473 496 6.262273 AGTTTGACCACGACTATTTTTGTCAT 59.738 34.615 0.00 0.00 34.37 3.06
474 497 5.605564 TGACCACGACTATTTTTGTCATG 57.394 39.130 0.00 0.00 34.37 3.07
475 498 4.083537 TGACCACGACTATTTTTGTCATGC 60.084 41.667 0.00 0.00 34.37 4.06
476 499 3.818210 ACCACGACTATTTTTGTCATGCA 59.182 39.130 0.00 0.00 34.37 3.96
485 508 7.306167 GACTATTTTTGTCATGCAATTATGCGG 60.306 37.037 0.00 0.00 43.23 5.69
512 535 9.472361 TGAACTAAATTATGTATCTACTTCGCC 57.528 33.333 0.00 0.00 0.00 5.54
513 536 9.694137 GAACTAAATTATGTATCTACTTCGCCT 57.306 33.333 0.00 0.00 0.00 5.52
515 538 9.477484 ACTAAATTATGTATCTACTTCGCCTTG 57.523 33.333 0.00 0.00 0.00 3.61
516 539 9.692749 CTAAATTATGTATCTACTTCGCCTTGA 57.307 33.333 0.00 0.00 0.00 3.02
517 540 8.958119 AAATTATGTATCTACTTCGCCTTGAA 57.042 30.769 0.00 0.00 34.74 2.69
518 541 9.561069 AAATTATGTATCTACTTCGCCTTGAAT 57.439 29.630 0.00 0.00 35.63 2.57
519 542 9.561069 AATTATGTATCTACTTCGCCTTGAATT 57.439 29.630 0.00 0.00 35.63 2.17
520 543 6.851222 ATGTATCTACTTCGCCTTGAATTG 57.149 37.500 0.00 0.00 35.63 2.32
521 544 5.116180 TGTATCTACTTCGCCTTGAATTGG 58.884 41.667 0.00 0.00 35.63 3.16
522 545 3.973206 TCTACTTCGCCTTGAATTGGA 57.027 42.857 0.00 0.00 35.63 3.53
523 546 4.487714 TCTACTTCGCCTTGAATTGGAT 57.512 40.909 0.00 0.00 35.63 3.41
524 547 5.607939 TCTACTTCGCCTTGAATTGGATA 57.392 39.130 0.00 0.00 35.63 2.59
525 548 5.984725 TCTACTTCGCCTTGAATTGGATAA 58.015 37.500 0.00 0.00 35.63 1.75
526 549 6.591935 TCTACTTCGCCTTGAATTGGATAAT 58.408 36.000 0.00 0.00 35.63 1.28
527 550 7.054124 TCTACTTCGCCTTGAATTGGATAATT 58.946 34.615 0.00 0.00 39.16 1.40
528 551 8.208224 TCTACTTCGCCTTGAATTGGATAATTA 58.792 33.333 0.00 0.00 36.66 1.40
529 552 7.027778 ACTTCGCCTTGAATTGGATAATTAC 57.972 36.000 0.00 0.00 36.66 1.89
530 553 6.039382 ACTTCGCCTTGAATTGGATAATTACC 59.961 38.462 0.00 0.00 36.66 2.85
531 554 5.690865 TCGCCTTGAATTGGATAATTACCT 58.309 37.500 0.00 0.00 36.66 3.08
532 555 6.126409 TCGCCTTGAATTGGATAATTACCTT 58.874 36.000 0.00 0.00 36.66 3.50
533 556 6.039270 TCGCCTTGAATTGGATAATTACCTTG 59.961 38.462 0.00 0.00 36.66 3.61
534 557 6.515832 GCCTTGAATTGGATAATTACCTTGG 58.484 40.000 0.00 0.00 36.66 3.61
535 558 6.098266 GCCTTGAATTGGATAATTACCTTGGT 59.902 38.462 0.00 0.00 36.66 3.67
536 559 7.364673 GCCTTGAATTGGATAATTACCTTGGTT 60.365 37.037 0.00 0.00 36.66 3.67
537 560 8.539544 CCTTGAATTGGATAATTACCTTGGTTT 58.460 33.333 0.00 0.00 36.66 3.27
538 561 9.586435 CTTGAATTGGATAATTACCTTGGTTTC 57.414 33.333 0.00 0.00 36.66 2.78
539 562 8.657387 TGAATTGGATAATTACCTTGGTTTCA 57.343 30.769 0.00 0.00 36.66 2.69
540 563 9.265862 TGAATTGGATAATTACCTTGGTTTCAT 57.734 29.630 0.00 0.00 36.66 2.57
541 564 9.750125 GAATTGGATAATTACCTTGGTTTCATC 57.250 33.333 0.00 0.00 36.66 2.92
542 565 9.492730 AATTGGATAATTACCTTGGTTTCATCT 57.507 29.630 0.00 0.00 34.81 2.90
543 566 8.893563 TTGGATAATTACCTTGGTTTCATCTT 57.106 30.769 0.00 0.00 0.00 2.40
544 567 8.893563 TGGATAATTACCTTGGTTTCATCTTT 57.106 30.769 0.00 0.00 0.00 2.52
545 568 9.320295 TGGATAATTACCTTGGTTTCATCTTTT 57.680 29.630 0.00 0.00 0.00 2.27
546 569 9.586435 GGATAATTACCTTGGTTTCATCTTTTG 57.414 33.333 0.00 0.00 0.00 2.44
550 573 9.710900 AATTACCTTGGTTTCATCTTTTGAATC 57.289 29.630 0.00 0.00 43.73 2.52
551 574 6.729690 ACCTTGGTTTCATCTTTTGAATCA 57.270 33.333 0.00 0.00 43.73 2.57
552 575 6.752168 ACCTTGGTTTCATCTTTTGAATCAG 58.248 36.000 0.00 0.00 43.73 2.90
553 576 6.550854 ACCTTGGTTTCATCTTTTGAATCAGA 59.449 34.615 0.00 0.00 43.73 3.27
554 577 7.234166 ACCTTGGTTTCATCTTTTGAATCAGAT 59.766 33.333 0.00 0.00 43.73 2.90
555 578 8.742777 CCTTGGTTTCATCTTTTGAATCAGATA 58.257 33.333 0.00 0.00 43.73 1.98
558 581 8.246180 TGGTTTCATCTTTTGAATCAGATAAGC 58.754 33.333 0.00 0.00 43.73 3.09
559 582 7.430502 GGTTTCATCTTTTGAATCAGATAAGCG 59.569 37.037 0.00 0.00 43.73 4.68
560 583 6.052840 TCATCTTTTGAATCAGATAAGCGC 57.947 37.500 0.00 0.00 0.00 5.92
561 584 5.585844 TCATCTTTTGAATCAGATAAGCGCA 59.414 36.000 11.47 0.00 0.00 6.09
562 585 5.878332 TCTTTTGAATCAGATAAGCGCAA 57.122 34.783 11.47 0.00 0.00 4.85
563 586 5.872635 TCTTTTGAATCAGATAAGCGCAAG 58.127 37.500 11.47 0.00 43.44 4.01
564 587 4.621068 TTTGAATCAGATAAGCGCAAGG 57.379 40.909 11.47 0.00 38.28 3.61
565 588 3.541996 TGAATCAGATAAGCGCAAGGA 57.458 42.857 11.47 0.00 38.28 3.36
566 589 3.872696 TGAATCAGATAAGCGCAAGGAA 58.127 40.909 11.47 0.00 38.28 3.36
567 590 4.454678 TGAATCAGATAAGCGCAAGGAAT 58.545 39.130 11.47 0.00 38.28 3.01
568 591 4.883585 TGAATCAGATAAGCGCAAGGAATT 59.116 37.500 11.47 0.00 38.28 2.17
569 592 5.008019 TGAATCAGATAAGCGCAAGGAATTC 59.992 40.000 11.47 10.17 38.28 2.17
570 593 3.872696 TCAGATAAGCGCAAGGAATTCA 58.127 40.909 11.47 0.00 38.28 2.57
571 594 4.260985 TCAGATAAGCGCAAGGAATTCAA 58.739 39.130 11.47 0.00 38.28 2.69
572 595 4.883585 TCAGATAAGCGCAAGGAATTCAAT 59.116 37.500 11.47 0.00 38.28 2.57
573 596 6.054941 TCAGATAAGCGCAAGGAATTCAATA 58.945 36.000 11.47 0.00 38.28 1.90
574 597 6.203530 TCAGATAAGCGCAAGGAATTCAATAG 59.796 38.462 11.47 0.00 38.28 1.73
575 598 6.017605 CAGATAAGCGCAAGGAATTCAATAGT 60.018 38.462 11.47 0.00 38.28 2.12
576 599 6.543831 AGATAAGCGCAAGGAATTCAATAGTT 59.456 34.615 11.47 0.00 38.28 2.24
577 600 7.715249 AGATAAGCGCAAGGAATTCAATAGTTA 59.285 33.333 11.47 0.00 38.28 2.24
578 601 5.485662 AGCGCAAGGAATTCAATAGTTAC 57.514 39.130 11.47 0.00 38.28 2.50
579 602 4.335594 AGCGCAAGGAATTCAATAGTTACC 59.664 41.667 11.47 0.00 38.28 2.85
580 603 4.785341 GCGCAAGGAATTCAATAGTTACCG 60.785 45.833 0.30 0.00 38.28 4.02
581 604 4.331717 CGCAAGGAATTCAATAGTTACCGT 59.668 41.667 7.93 0.00 0.00 4.83
582 605 5.569413 GCAAGGAATTCAATAGTTACCGTG 58.431 41.667 7.93 0.00 0.00 4.94
583 606 5.448632 GCAAGGAATTCAATAGTTACCGTGG 60.449 44.000 7.93 0.00 0.00 4.94
584 607 5.431179 AGGAATTCAATAGTTACCGTGGT 57.569 39.130 7.93 0.00 0.00 4.16
585 608 5.812286 AGGAATTCAATAGTTACCGTGGTT 58.188 37.500 7.93 0.00 0.00 3.67
586 609 5.646360 AGGAATTCAATAGTTACCGTGGTTG 59.354 40.000 7.93 0.00 0.00 3.77
587 610 4.957759 ATTCAATAGTTACCGTGGTTGC 57.042 40.909 0.00 0.00 0.00 4.17
588 611 3.404224 TCAATAGTTACCGTGGTTGCA 57.596 42.857 0.00 0.00 0.00 4.08
589 612 3.945346 TCAATAGTTACCGTGGTTGCAT 58.055 40.909 0.00 0.00 0.00 3.96
590 613 4.328536 TCAATAGTTACCGTGGTTGCATT 58.671 39.130 0.00 0.00 0.00 3.56
591 614 4.762765 TCAATAGTTACCGTGGTTGCATTT 59.237 37.500 0.00 0.00 0.00 2.32
592 615 5.241949 TCAATAGTTACCGTGGTTGCATTTT 59.758 36.000 0.00 0.00 0.00 1.82
593 616 3.363341 AGTTACCGTGGTTGCATTTTG 57.637 42.857 0.00 0.00 0.00 2.44
594 617 2.035321 AGTTACCGTGGTTGCATTTTGG 59.965 45.455 0.00 0.00 0.00 3.28
595 618 1.693627 TACCGTGGTTGCATTTTGGT 58.306 45.000 0.00 0.00 0.00 3.67
596 619 0.103937 ACCGTGGTTGCATTTTGGTG 59.896 50.000 0.00 0.00 0.00 4.17
597 620 0.387202 CCGTGGTTGCATTTTGGTGA 59.613 50.000 0.00 0.00 0.00 4.02
598 621 1.000731 CCGTGGTTGCATTTTGGTGAT 59.999 47.619 0.00 0.00 0.00 3.06
599 622 2.060284 CGTGGTTGCATTTTGGTGATG 58.940 47.619 0.00 0.00 0.00 3.07
600 623 2.288091 CGTGGTTGCATTTTGGTGATGA 60.288 45.455 0.00 0.00 0.00 2.92
601 624 3.614630 CGTGGTTGCATTTTGGTGATGAT 60.615 43.478 0.00 0.00 0.00 2.45
602 625 4.380339 CGTGGTTGCATTTTGGTGATGATA 60.380 41.667 0.00 0.00 0.00 2.15
603 626 5.663456 GTGGTTGCATTTTGGTGATGATAT 58.337 37.500 0.00 0.00 0.00 1.63
604 627 6.459435 CGTGGTTGCATTTTGGTGATGATATA 60.459 38.462 0.00 0.00 0.00 0.86
605 628 7.436118 GTGGTTGCATTTTGGTGATGATATAT 58.564 34.615 0.00 0.00 0.00 0.86
606 629 7.927629 GTGGTTGCATTTTGGTGATGATATATT 59.072 33.333 0.00 0.00 0.00 1.28
607 630 8.484575 TGGTTGCATTTTGGTGATGATATATTT 58.515 29.630 0.00 0.00 0.00 1.40
608 631 9.328845 GGTTGCATTTTGGTGATGATATATTTT 57.671 29.630 0.00 0.00 0.00 1.82
711 734 9.945633 ATGTTTTATATTGTAACAATAGGGGGT 57.054 29.630 0.00 0.00 35.62 4.95
718 741 5.106876 TGTAACAATAGGGGGTAAAGAGC 57.893 43.478 0.00 0.00 0.00 4.09
719 742 4.786454 TGTAACAATAGGGGGTAAAGAGCT 59.214 41.667 0.00 0.00 0.00 4.09
720 743 4.505324 AACAATAGGGGGTAAAGAGCTC 57.495 45.455 5.27 5.27 0.00 4.09
721 744 3.737263 ACAATAGGGGGTAAAGAGCTCT 58.263 45.455 11.45 11.45 0.00 4.09
722 745 4.112331 ACAATAGGGGGTAAAGAGCTCTT 58.888 43.478 23.49 23.49 37.91 2.85
723 746 4.080299 ACAATAGGGGGTAAAGAGCTCTTG 60.080 45.833 29.09 14.97 36.12 3.02
724 747 1.290134 AGGGGGTAAAGAGCTCTTGG 58.710 55.000 29.09 0.00 36.12 3.61
725 748 0.992695 GGGGGTAAAGAGCTCTTGGT 59.007 55.000 29.09 17.06 36.12 3.67
726 749 1.354705 GGGGGTAAAGAGCTCTTGGTT 59.645 52.381 29.09 16.32 36.12 3.67
727 750 2.437413 GGGGTAAAGAGCTCTTGGTTG 58.563 52.381 29.09 0.00 36.12 3.77
728 751 2.039879 GGGGTAAAGAGCTCTTGGTTGA 59.960 50.000 29.09 10.02 36.12 3.18
729 752 3.308473 GGGGTAAAGAGCTCTTGGTTGAT 60.308 47.826 29.09 14.86 36.12 2.57
730 753 4.336280 GGGTAAAGAGCTCTTGGTTGATT 58.664 43.478 29.09 14.14 36.12 2.57
731 754 4.767409 GGGTAAAGAGCTCTTGGTTGATTT 59.233 41.667 29.09 13.41 36.12 2.17
732 755 5.944007 GGGTAAAGAGCTCTTGGTTGATTTA 59.056 40.000 29.09 12.39 36.12 1.40
733 756 6.603599 GGGTAAAGAGCTCTTGGTTGATTTAT 59.396 38.462 29.09 11.98 36.12 1.40
734 757 7.201741 GGGTAAAGAGCTCTTGGTTGATTTATC 60.202 40.741 29.09 14.67 36.12 1.75
735 758 7.554476 GGTAAAGAGCTCTTGGTTGATTTATCT 59.446 37.037 29.09 11.27 36.12 1.98
736 759 8.951243 GTAAAGAGCTCTTGGTTGATTTATCTT 58.049 33.333 29.09 10.84 36.12 2.40
737 760 8.414629 AAAGAGCTCTTGGTTGATTTATCTTT 57.585 30.769 29.09 5.06 36.12 2.52
738 761 7.388460 AGAGCTCTTGGTTGATTTATCTTTG 57.612 36.000 11.45 0.00 0.00 2.77
739 762 6.376581 AGAGCTCTTGGTTGATTTATCTTTGG 59.623 38.462 11.45 0.00 0.00 3.28
740 763 5.420104 AGCTCTTGGTTGATTTATCTTTGGG 59.580 40.000 0.00 0.00 0.00 4.12
741 764 5.418840 GCTCTTGGTTGATTTATCTTTGGGA 59.581 40.000 0.00 0.00 0.00 4.37
742 765 6.405176 GCTCTTGGTTGATTTATCTTTGGGAG 60.405 42.308 0.00 0.00 0.00 4.30
743 766 5.418840 TCTTGGTTGATTTATCTTTGGGAGC 59.581 40.000 0.00 0.00 0.00 4.70
744 767 4.671831 TGGTTGATTTATCTTTGGGAGCA 58.328 39.130 0.00 0.00 0.00 4.26
745 768 5.271598 TGGTTGATTTATCTTTGGGAGCAT 58.728 37.500 0.00 0.00 0.00 3.79
746 769 5.127519 TGGTTGATTTATCTTTGGGAGCATG 59.872 40.000 0.00 0.00 0.00 4.06
747 770 5.360714 GGTTGATTTATCTTTGGGAGCATGA 59.639 40.000 0.00 0.00 0.00 3.07
748 771 6.268566 GTTGATTTATCTTTGGGAGCATGAC 58.731 40.000 0.00 0.00 0.00 3.06
749 772 4.889409 TGATTTATCTTTGGGAGCATGACC 59.111 41.667 0.00 0.00 0.00 4.02
750 773 4.591321 TTTATCTTTGGGAGCATGACCT 57.409 40.909 0.00 0.00 0.00 3.85
751 774 5.708736 TTTATCTTTGGGAGCATGACCTA 57.291 39.130 0.00 0.00 0.00 3.08
752 775 5.708736 TTATCTTTGGGAGCATGACCTAA 57.291 39.130 0.00 0.03 0.00 2.69
753 776 4.591321 ATCTTTGGGAGCATGACCTAAA 57.409 40.909 15.71 15.71 36.66 1.85
754 777 4.591321 TCTTTGGGAGCATGACCTAAAT 57.409 40.909 16.47 0.00 37.28 1.40
755 778 5.708736 TCTTTGGGAGCATGACCTAAATA 57.291 39.130 16.47 10.06 37.28 1.40
756 779 6.266131 TCTTTGGGAGCATGACCTAAATAT 57.734 37.500 16.47 0.00 37.28 1.28
757 780 7.387265 TCTTTGGGAGCATGACCTAAATATA 57.613 36.000 16.47 7.27 37.28 0.86
758 781 7.988937 TCTTTGGGAGCATGACCTAAATATAT 58.011 34.615 16.47 0.00 37.28 0.86
759 782 8.103305 TCTTTGGGAGCATGACCTAAATATATC 58.897 37.037 16.47 0.00 37.28 1.63
760 783 6.950860 TGGGAGCATGACCTAAATATATCA 57.049 37.500 0.00 0.00 0.00 2.15
761 784 6.711277 TGGGAGCATGACCTAAATATATCAC 58.289 40.000 0.00 0.00 0.00 3.06
762 785 6.116126 GGGAGCATGACCTAAATATATCACC 58.884 44.000 0.00 0.00 0.00 4.02
763 786 6.116126 GGAGCATGACCTAAATATATCACCC 58.884 44.000 0.00 0.00 0.00 4.61
764 787 6.296432 GGAGCATGACCTAAATATATCACCCA 60.296 42.308 0.00 0.00 0.00 4.51
765 788 7.276088 AGCATGACCTAAATATATCACCCAT 57.724 36.000 0.00 0.00 0.00 4.00
766 789 7.114754 AGCATGACCTAAATATATCACCCATG 58.885 38.462 0.00 0.00 0.00 3.66
767 790 6.183360 GCATGACCTAAATATATCACCCATGC 60.183 42.308 0.00 0.00 43.72 4.06
768 791 6.446909 TGACCTAAATATATCACCCATGCA 57.553 37.500 0.00 0.00 0.00 3.96
769 792 7.031415 TGACCTAAATATATCACCCATGCAT 57.969 36.000 0.00 0.00 0.00 3.96
770 793 8.156822 TGACCTAAATATATCACCCATGCATA 57.843 34.615 0.00 0.00 0.00 3.14
771 794 8.046708 TGACCTAAATATATCACCCATGCATAC 58.953 37.037 0.00 0.00 0.00 2.39
772 795 7.927788 ACCTAAATATATCACCCATGCATACA 58.072 34.615 0.00 0.00 0.00 2.29
773 796 8.560039 ACCTAAATATATCACCCATGCATACAT 58.440 33.333 0.00 0.00 36.79 2.29
788 811 5.368145 TGCATACATGACTATTGTTCTCCC 58.632 41.667 0.00 0.00 0.00 4.30
789 812 4.449068 GCATACATGACTATTGTTCTCCCG 59.551 45.833 0.00 0.00 0.00 5.14
790 813 5.601662 CATACATGACTATTGTTCTCCCGT 58.398 41.667 0.00 0.00 0.00 5.28
791 814 4.553330 ACATGACTATTGTTCTCCCGTT 57.447 40.909 0.00 0.00 0.00 4.44
792 815 4.253685 ACATGACTATTGTTCTCCCGTTG 58.746 43.478 0.00 0.00 0.00 4.10
793 816 2.695359 TGACTATTGTTCTCCCGTTGC 58.305 47.619 0.00 0.00 0.00 4.17
794 817 2.037902 TGACTATTGTTCTCCCGTTGCA 59.962 45.455 0.00 0.00 0.00 4.08
795 818 3.071479 GACTATTGTTCTCCCGTTGCAA 58.929 45.455 0.00 0.00 0.00 4.08
796 819 2.812011 ACTATTGTTCTCCCGTTGCAAC 59.188 45.455 19.89 19.89 0.00 4.17
814 837 5.980324 GCAACGCACATGCAATTATATAG 57.020 39.130 4.49 0.00 43.29 1.31
820 843 9.663904 AACGCACATGCAATTATATAGTTAAAG 57.336 29.630 4.49 0.00 42.21 1.85
837 860 0.107831 AAGTAAGTGGGCAAGCGACA 59.892 50.000 0.00 0.00 0.00 4.35
839 862 0.727398 GTAAGTGGGCAAGCGACATC 59.273 55.000 0.00 0.00 0.00 3.06
850 873 0.107508 AGCGACATCCTTGACCCATG 60.108 55.000 0.00 0.00 0.00 3.66
851 874 1.718757 GCGACATCCTTGACCCATGC 61.719 60.000 0.00 0.00 0.00 4.06
852 875 0.392863 CGACATCCTTGACCCATGCA 60.393 55.000 0.00 0.00 0.00 3.96
853 876 1.748244 CGACATCCTTGACCCATGCAT 60.748 52.381 0.00 0.00 0.00 3.96
864 887 3.942601 CATGCATCACCCATGGCA 58.057 55.556 6.09 0.00 37.12 4.92
866 889 2.131709 ATGCATCACCCATGGCAGC 61.132 57.895 6.09 5.71 32.37 5.25
899 922 5.230182 TGCACCGTATGATAAGAGCATAAG 58.770 41.667 2.63 0.00 30.68 1.73
909 932 6.582636 TGATAAGAGCATAAGAATCGGTGTT 58.417 36.000 0.00 0.00 0.00 3.32
928 958 9.263446 TCGGTGTTTATATAAGAGGGCTAATAT 57.737 33.333 0.00 0.00 0.00 1.28
988 1023 2.417924 GGCTGTCAGTCTGTTCATCGAT 60.418 50.000 0.93 0.00 0.00 3.59
1014 1059 4.654915 TCAAGCAGATGAAAATGTCTCCA 58.345 39.130 0.00 0.00 0.00 3.86
1027 1072 6.385766 AAATGTCTCCAGAAAGAGAAGGAT 57.614 37.500 0.00 0.00 44.32 3.24
1029 1074 4.420206 TGTCTCCAGAAAGAGAAGGATCA 58.580 43.478 0.00 0.00 44.32 2.92
1031 1076 4.466015 GTCTCCAGAAAGAGAAGGATCAGT 59.534 45.833 0.00 0.00 44.32 3.41
1051 1096 2.028020 GTGGACAAGGAAGAAGGATCGT 60.028 50.000 0.00 0.00 0.00 3.73
1130 1191 2.288886 ACTTCAAGTACGCCTTCACCTC 60.289 50.000 0.00 0.00 0.00 3.85
1131 1192 1.334160 TCAAGTACGCCTTCACCTCA 58.666 50.000 0.00 0.00 0.00 3.86
1135 1196 3.001902 TACGCCTTCACCTCAGCCG 62.002 63.158 0.00 0.00 0.00 5.52
1195 1269 2.094182 ACACACATCCCGTATGTCAGAC 60.094 50.000 0.00 0.00 46.15 3.51
1224 1303 2.620108 GCATCTTCTTCTTCCTTGGGCT 60.620 50.000 0.00 0.00 0.00 5.19
1228 1307 3.846588 TCTTCTTCTTCCTTGGGCTATGT 59.153 43.478 0.00 0.00 0.00 2.29
1229 1308 5.030147 TCTTCTTCTTCCTTGGGCTATGTA 58.970 41.667 0.00 0.00 0.00 2.29
1230 1309 5.129485 TCTTCTTCTTCCTTGGGCTATGTAG 59.871 44.000 0.00 0.00 0.00 2.74
1312 1415 2.544721 TCAAGAAGGACCTGCAGATCT 58.455 47.619 17.39 6.45 0.00 2.75
1314 1417 2.235650 CAAGAAGGACCTGCAGATCTCA 59.764 50.000 17.39 0.00 0.00 3.27
1332 1435 0.036952 CAGACGTGCAGGTGGAGATT 60.037 55.000 18.18 0.00 0.00 2.40
1515 1618 4.764336 CGCTTCGTCACCGGCGTA 62.764 66.667 6.01 0.00 39.06 4.42
1608 1711 0.748450 TCACGTCTTTCACCGAGGTT 59.252 50.000 0.00 0.00 0.00 3.50
1623 1726 2.164219 CGAGGTTTTCATCAATGTGGGG 59.836 50.000 0.00 0.00 0.00 4.96
2094 2669 2.824041 GGCATCACCGGCGACAAT 60.824 61.111 9.30 0.00 0.00 2.71
2175 2750 2.361992 TTCCAGCTCGACCGCCTA 60.362 61.111 0.00 0.00 0.00 3.93
2283 2858 3.781307 CCGGACGCCAAGATCCCA 61.781 66.667 0.00 0.00 0.00 4.37
2493 3068 1.077501 CAAGGCCATCACCATCGGT 60.078 57.895 5.01 0.00 35.62 4.69
2506 3081 0.392193 CATCGGTGGCAGCTTCTTCT 60.392 55.000 15.48 0.00 0.00 2.85
2565 3140 1.008194 CACGTTCGTTCCGGAGACA 60.008 57.895 3.34 0.00 0.00 3.41
2657 3235 1.101049 CACGCCACCAAAGACAAGGT 61.101 55.000 0.00 0.00 39.10 3.50
2666 3250 5.830000 ACCAAAGACAAGGTGAAAGTAAC 57.170 39.130 0.00 0.00 36.60 2.50
2707 3291 1.392589 AAGTCACCCAACTGTTGCTG 58.607 50.000 14.94 11.57 0.00 4.41
2708 3292 1.103398 AGTCACCCAACTGTTGCTGC 61.103 55.000 14.94 8.29 0.00 5.25
2709 3293 1.077140 TCACCCAACTGTTGCTGCA 60.077 52.632 14.94 0.00 0.00 4.41
2710 3294 0.467844 TCACCCAACTGTTGCTGCAT 60.468 50.000 14.94 0.00 0.00 3.96
2711 3295 0.038892 CACCCAACTGTTGCTGCATC 60.039 55.000 14.94 2.97 0.00 3.91
2712 3296 0.467844 ACCCAACTGTTGCTGCATCA 60.468 50.000 14.94 12.40 0.00 3.07
2713 3297 0.038892 CCCAACTGTTGCTGCATCAC 60.039 55.000 14.94 3.47 0.00 3.06
2714 3298 0.956633 CCAACTGTTGCTGCATCACT 59.043 50.000 14.94 0.00 0.00 3.41
2715 3299 2.153645 CCAACTGTTGCTGCATCACTA 58.846 47.619 14.94 0.00 0.00 2.74
2716 3300 2.095567 CCAACTGTTGCTGCATCACTAC 60.096 50.000 14.94 1.99 0.00 2.73
2717 3301 2.810274 CAACTGTTGCTGCATCACTACT 59.190 45.455 7.70 0.00 0.00 2.57
2718 3302 2.420642 ACTGTTGCTGCATCACTACTG 58.579 47.619 9.22 7.82 0.00 2.74
2719 3303 1.736126 CTGTTGCTGCATCACTACTGG 59.264 52.381 9.22 0.00 0.00 4.00
2720 3304 1.347378 TGTTGCTGCATCACTACTGGA 59.653 47.619 9.22 0.00 0.00 3.86
2721 3305 2.224499 TGTTGCTGCATCACTACTGGAA 60.224 45.455 9.22 0.00 0.00 3.53
2722 3306 2.813754 GTTGCTGCATCACTACTGGAAA 59.186 45.455 1.84 0.00 0.00 3.13
2723 3307 3.138884 TGCTGCATCACTACTGGAAAA 57.861 42.857 0.00 0.00 0.00 2.29
2724 3308 2.813754 TGCTGCATCACTACTGGAAAAC 59.186 45.455 0.00 0.00 0.00 2.43
2725 3309 2.162408 GCTGCATCACTACTGGAAAACC 59.838 50.000 0.00 0.00 0.00 3.27
2726 3310 2.416547 CTGCATCACTACTGGAAAACCG 59.583 50.000 0.00 0.00 0.00 4.44
2727 3311 2.224426 TGCATCACTACTGGAAAACCGT 60.224 45.455 0.00 0.00 0.00 4.83
2728 3312 2.812011 GCATCACTACTGGAAAACCGTT 59.188 45.455 0.00 0.00 0.00 4.44
2729 3313 3.252458 GCATCACTACTGGAAAACCGTTT 59.748 43.478 0.00 0.00 0.00 3.60
2730 3314 4.261447 GCATCACTACTGGAAAACCGTTTT 60.261 41.667 9.01 9.01 35.12 2.43
2731 3315 5.049267 GCATCACTACTGGAAAACCGTTTTA 60.049 40.000 9.23 0.00 31.94 1.52
2732 3316 5.989551 TCACTACTGGAAAACCGTTTTAC 57.010 39.130 11.49 11.49 33.98 2.01
2733 3317 5.426504 TCACTACTGGAAAACCGTTTTACA 58.573 37.500 18.60 18.60 41.03 2.41
2734 3318 5.294060 TCACTACTGGAAAACCGTTTTACAC 59.706 40.000 16.30 7.78 38.51 2.90
2735 3319 5.064962 CACTACTGGAAAACCGTTTTACACA 59.935 40.000 16.30 11.29 38.51 3.72
2736 3320 4.625972 ACTGGAAAACCGTTTTACACAG 57.374 40.909 16.30 19.70 38.51 3.66
2737 3321 4.263435 ACTGGAAAACCGTTTTACACAGA 58.737 39.130 26.22 8.63 38.51 3.41
2738 3322 4.334481 ACTGGAAAACCGTTTTACACAGAG 59.666 41.667 26.22 17.14 38.51 3.35
2739 3323 4.263435 TGGAAAACCGTTTTACACAGAGT 58.737 39.130 16.30 0.00 38.51 3.24
2740 3324 4.095185 TGGAAAACCGTTTTACACAGAGTG 59.905 41.667 16.30 0.00 38.51 3.51
2742 3326 5.392272 GGAAAACCGTTTTACACAGAGTGTT 60.392 40.000 13.22 0.00 46.42 3.32
2743 3327 5.632244 AAACCGTTTTACACAGAGTGTTT 57.368 34.783 8.20 0.00 45.08 2.83
2744 3328 5.632244 AACCGTTTTACACAGAGTGTTTT 57.368 34.783 8.20 0.00 45.08 2.43
2745 3329 4.976987 ACCGTTTTACACAGAGTGTTTTG 58.023 39.130 8.20 0.00 45.08 2.44
2746 3330 3.789224 CCGTTTTACACAGAGTGTTTTGC 59.211 43.478 8.20 0.00 45.08 3.68
2747 3331 4.438200 CCGTTTTACACAGAGTGTTTTGCT 60.438 41.667 8.20 0.00 45.08 3.91
2748 3332 5.220700 CCGTTTTACACAGAGTGTTTTGCTA 60.221 40.000 8.20 0.00 45.08 3.49
2749 3333 5.675444 CGTTTTACACAGAGTGTTTTGCTAC 59.325 40.000 8.20 0.00 45.08 3.58
2750 3334 5.744666 TTTACACAGAGTGTTTTGCTACC 57.255 39.130 8.20 0.00 45.08 3.18
2751 3335 3.275617 ACACAGAGTGTTTTGCTACCA 57.724 42.857 0.00 0.00 45.08 3.25
2752 3336 3.820557 ACACAGAGTGTTTTGCTACCAT 58.179 40.909 0.00 0.00 45.08 3.55
2753 3337 4.968259 ACACAGAGTGTTTTGCTACCATA 58.032 39.130 0.00 0.00 45.08 2.74
2754 3338 4.755123 ACACAGAGTGTTTTGCTACCATAC 59.245 41.667 0.00 0.00 45.08 2.39
2755 3339 3.994392 ACAGAGTGTTTTGCTACCATACG 59.006 43.478 0.00 0.00 0.00 3.06
2756 3340 3.000727 AGAGTGTTTTGCTACCATACGC 58.999 45.455 0.00 0.00 0.00 4.42
2757 3341 2.081462 AGTGTTTTGCTACCATACGCC 58.919 47.619 0.00 0.00 0.00 5.68
2758 3342 1.080298 TGTTTTGCTACCATACGCCG 58.920 50.000 0.00 0.00 0.00 6.46
2759 3343 1.337917 TGTTTTGCTACCATACGCCGA 60.338 47.619 0.00 0.00 0.00 5.54
2760 3344 1.326548 GTTTTGCTACCATACGCCGAG 59.673 52.381 0.00 0.00 0.00 4.63
2761 3345 0.818938 TTTGCTACCATACGCCGAGA 59.181 50.000 0.00 0.00 0.00 4.04
2762 3346 1.037493 TTGCTACCATACGCCGAGAT 58.963 50.000 0.00 0.00 0.00 2.75
2763 3347 1.900245 TGCTACCATACGCCGAGATA 58.100 50.000 0.00 0.00 0.00 1.98
2764 3348 2.232399 TGCTACCATACGCCGAGATAA 58.768 47.619 0.00 0.00 0.00 1.75
2765 3349 2.624364 TGCTACCATACGCCGAGATAAA 59.376 45.455 0.00 0.00 0.00 1.40
2766 3350 3.068448 TGCTACCATACGCCGAGATAAAA 59.932 43.478 0.00 0.00 0.00 1.52
2767 3351 4.053295 GCTACCATACGCCGAGATAAAAA 58.947 43.478 0.00 0.00 0.00 1.94
2782 3366 3.164028 AAAAAGACTTTCGCGCTGC 57.836 47.368 5.56 0.00 0.00 5.25
2783 3367 0.663153 AAAAAGACTTTCGCGCTGCT 59.337 45.000 5.56 0.00 0.00 4.24
2784 3368 0.663153 AAAAGACTTTCGCGCTGCTT 59.337 45.000 5.56 0.00 0.00 3.91
2785 3369 0.663153 AAAGACTTTCGCGCTGCTTT 59.337 45.000 5.56 3.88 0.00 3.51
2786 3370 1.508632 AAGACTTTCGCGCTGCTTTA 58.491 45.000 5.56 0.00 0.00 1.85
2787 3371 1.726853 AGACTTTCGCGCTGCTTTAT 58.273 45.000 5.56 0.00 0.00 1.40
2788 3372 2.076863 AGACTTTCGCGCTGCTTTATT 58.923 42.857 5.56 0.00 0.00 1.40
2789 3373 3.259064 AGACTTTCGCGCTGCTTTATTA 58.741 40.909 5.56 0.00 0.00 0.98
2790 3374 3.871594 AGACTTTCGCGCTGCTTTATTAT 59.128 39.130 5.56 0.00 0.00 1.28
2791 3375 5.047847 AGACTTTCGCGCTGCTTTATTATA 58.952 37.500 5.56 0.00 0.00 0.98
2801 3385 6.531948 GCGCTGCTTTATTATATACTAGCTGT 59.468 38.462 0.00 0.00 32.39 4.40
2809 3393 3.802948 ATATACTAGCTGTATGCCCGC 57.197 47.619 15.05 0.00 41.55 6.13
2815 3399 2.583868 CTGTATGCCCGCGCGTTA 60.584 61.111 29.95 14.74 38.08 3.18
2841 3425 6.458206 CCACGGAACAATAAACATAGACATGG 60.458 42.308 0.00 0.00 36.39 3.66
2844 3428 6.486657 CGGAACAATAAACATAGACATGGGAT 59.513 38.462 0.00 0.00 36.39 3.85
2849 3433 9.300681 ACAATAAACATAGACATGGGATATTGG 57.699 33.333 0.00 0.00 38.59 3.16
2850 3434 9.300681 CAATAAACATAGACATGGGATATTGGT 57.699 33.333 0.00 0.00 35.33 3.67
2923 3510 4.261322 GCAGGTGCCATACATGTAATTCTG 60.261 45.833 10.14 12.08 42.80 3.02
2958 3545 8.614469 TCAAAACAAATCAAACATATTTCCCC 57.386 30.769 0.00 0.00 0.00 4.81
2967 3711 6.126409 TCAAACATATTTCCCCTCCATGTAC 58.874 40.000 0.00 0.00 0.00 2.90
2968 3712 5.994416 AACATATTTCCCCTCCATGTACT 57.006 39.130 0.00 0.00 0.00 2.73
2969 3713 5.568620 ACATATTTCCCCTCCATGTACTC 57.431 43.478 0.00 0.00 0.00 2.59
2970 3714 4.351111 ACATATTTCCCCTCCATGTACTCC 59.649 45.833 0.00 0.00 0.00 3.85
2971 3715 1.591768 TTTCCCCTCCATGTACTCCC 58.408 55.000 0.00 0.00 0.00 4.30
2972 3716 0.722676 TTCCCCTCCATGTACTCCCT 59.277 55.000 0.00 0.00 0.00 4.20
2973 3717 0.264955 TCCCCTCCATGTACTCCCTC 59.735 60.000 0.00 0.00 0.00 4.30
2974 3718 0.764752 CCCCTCCATGTACTCCCTCC 60.765 65.000 0.00 0.00 0.00 4.30
2975 3719 1.115930 CCCTCCATGTACTCCCTCCG 61.116 65.000 0.00 0.00 0.00 4.63
2976 3720 0.397254 CCTCCATGTACTCCCTCCGT 60.397 60.000 0.00 0.00 0.00 4.69
2977 3721 1.486211 CTCCATGTACTCCCTCCGTT 58.514 55.000 0.00 0.00 0.00 4.44
2978 3722 1.409427 CTCCATGTACTCCCTCCGTTC 59.591 57.143 0.00 0.00 0.00 3.95
2979 3723 0.464452 CCATGTACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
2980 3724 1.486211 CATGTACTCCCTCCGTTCCT 58.514 55.000 0.00 0.00 0.00 3.36
2981 3725 2.662866 CATGTACTCCCTCCGTTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
2982 3726 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2983 3727 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2984 3728 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2985 3729 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2986 3730 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2987 3731 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
2988 3732 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2989 3733 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2990 3734 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2991 3735 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2992 3736 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2993 3737 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2994 3738 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2995 3739 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2996 3740 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2997 3741 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2998 3742 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2999 3743 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3012 3756 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3013 3757 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3014 3758 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3015 3759 9.213799 GTCTTTCTAGAGATTTCAACAAGTGAT 57.786 33.333 0.00 0.00 35.70 3.06
3016 3760 9.784531 TCTTTCTAGAGATTTCAACAAGTGATT 57.215 29.630 0.00 0.00 35.70 2.57
3019 3763 9.996554 TTCTAGAGATTTCAACAAGTGATTACA 57.003 29.630 0.00 0.00 35.70 2.41
3023 3767 8.873830 AGAGATTTCAACAAGTGATTACATACG 58.126 33.333 0.00 0.00 35.70 3.06
3024 3768 7.974675 AGATTTCAACAAGTGATTACATACGG 58.025 34.615 0.00 0.00 35.70 4.02
3025 3769 7.822334 AGATTTCAACAAGTGATTACATACGGA 59.178 33.333 0.00 0.00 35.70 4.69
3026 3770 6.961359 TTCAACAAGTGATTACATACGGAG 57.039 37.500 0.00 0.00 35.70 4.63
3027 3771 6.460781 TTCAACAAGTGATTACATACGGAGT 58.539 36.000 0.00 0.00 39.82 3.85
3028 3772 7.604549 TTCAACAAGTGATTACATACGGAGTA 58.395 34.615 0.00 0.00 41.57 2.59
3029 3773 8.089597 TTCAACAAGTGATTACATACGGAGTAA 58.910 33.333 0.00 0.00 40.96 2.24
3045 3789 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
3046 3790 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
3085 3829 9.788889 CTATATACATCCGTATATGGTAGTCCA 57.211 37.037 10.85 3.57 46.31 4.02
3102 3846 9.231297 TGGTAGTCCATTTGAAATCTCTAAAAG 57.769 33.333 0.00 0.00 39.03 2.27
3103 3847 9.449719 GGTAGTCCATTTGAAATCTCTAAAAGA 57.550 33.333 0.00 0.00 38.72 2.52
3105 3849 8.924511 AGTCCATTTGAAATCTCTAAAAGACA 57.075 30.769 0.00 0.00 36.65 3.41
3106 3850 9.354673 AGTCCATTTGAAATCTCTAAAAGACAA 57.645 29.630 0.00 0.00 36.65 3.18
3107 3851 9.965824 GTCCATTTGAAATCTCTAAAAGACAAA 57.034 29.630 0.00 0.00 36.65 2.83
3121 3865 9.947433 TCTAAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 37.29 4.69
3123 3867 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3124 3868 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3125 3869 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3126 3870 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3127 3871 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3128 3872 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3160 3904 4.622740 GGAAGTCAATTTGTTGCATGCTAC 59.377 41.667 23.01 23.01 0.00 3.58
3162 3906 4.801891 AGTCAATTTGTTGCATGCTACAG 58.198 39.130 28.85 19.83 33.74 2.74
3163 3907 4.279169 AGTCAATTTGTTGCATGCTACAGT 59.721 37.500 28.85 20.79 33.74 3.55
3186 3930 9.393512 CAGTATTAGAGTGTACAGTAGGTAGTT 57.606 37.037 2.39 0.00 31.13 2.24
3304 4049 2.044946 ATCTTGTTGCCGGCCTCC 60.045 61.111 26.77 12.29 0.00 4.30
3335 4081 4.130118 CAGAGTCAGTTGCAAAACCTAGT 58.870 43.478 0.00 0.00 0.00 2.57
3336 4082 4.212214 CAGAGTCAGTTGCAAAACCTAGTC 59.788 45.833 0.00 0.00 0.00 2.59
3447 4198 7.933577 CCAGTCATACCTGATACAACATAATGT 59.066 37.037 0.00 0.00 34.23 2.71
3449 4200 9.330063 AGTCATACCTGATACAACATAATGTTG 57.670 33.333 0.00 0.00 46.60 3.33
3494 4245 3.701205 TCTGCAAGGCTATTTGACTGA 57.299 42.857 0.00 0.00 31.76 3.41
3592 4348 2.336667 CATCCCGAAACAAAACCATGC 58.663 47.619 0.00 0.00 0.00 4.06
3631 4387 7.858052 AAAAGAGCGAAACAACAATCAATAG 57.142 32.000 0.00 0.00 0.00 1.73
3632 4388 4.974591 AGAGCGAAACAACAATCAATAGC 58.025 39.130 0.00 0.00 0.00 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 45 2.520686 GCATTTTTGCATGCTCAAGC 57.479 45.000 20.33 11.47 45.35 4.01
153 173 8.489990 TGCTGAAAATTTGAGAATGACAAAAA 57.510 26.923 0.00 0.00 0.00 1.94
186 206 4.156008 ACTTCGGTCAATAGCACCAATTTC 59.844 41.667 0.00 0.00 32.89 2.17
203 223 6.910536 AGTTTAGCAATATTCTGACTTCGG 57.089 37.500 0.00 0.00 0.00 4.30
217 237 8.846211 AGCTTACACAAAGAATTAGTTTAGCAA 58.154 29.630 0.00 0.00 37.38 3.91
224 244 7.824289 TCTGCATAGCTTACACAAAGAATTAGT 59.176 33.333 0.00 0.00 37.38 2.24
235 255 6.241207 TGTTTTTCTCTGCATAGCTTACAC 57.759 37.500 0.00 0.00 0.00 2.90
246 266 6.441274 TCATCAACTTCATGTTTTTCTCTGC 58.559 36.000 0.00 0.00 36.63 4.26
260 280 3.121944 CACGTACACAGCTCATCAACTTC 59.878 47.826 0.00 0.00 0.00 3.01
272 292 4.556233 TCCTTTCATCTTCACGTACACAG 58.444 43.478 0.00 0.00 0.00 3.66
279 299 2.426522 TGGCTTCCTTTCATCTTCACG 58.573 47.619 0.00 0.00 0.00 4.35
283 303 2.379907 TCCCTTGGCTTCCTTTCATCTT 59.620 45.455 0.00 0.00 0.00 2.40
286 306 2.999185 TTCCCTTGGCTTCCTTTCAT 57.001 45.000 0.00 0.00 0.00 2.57
293 313 4.781934 ACACAGTATATTCCCTTGGCTTC 58.218 43.478 0.00 0.00 0.00 3.86
319 339 0.818040 GCACTTTCCAAGGTCACCGT 60.818 55.000 0.00 0.00 0.00 4.83
321 341 1.270550 CATGCACTTTCCAAGGTCACC 59.729 52.381 0.00 0.00 0.00 4.02
333 353 6.051717 GTCTATGTAGGATCAACATGCACTT 58.948 40.000 18.37 0.51 38.05 3.16
423 446 7.931134 TGTACAAAACATTGCAATGCTGCTTC 61.931 38.462 33.94 20.41 40.47 3.86
429 452 5.655893 AACTGTACAAAACATTGCAATGC 57.344 34.783 33.94 18.79 40.04 3.56
431 454 6.257630 GGTCAAACTGTACAAAACATTGCAAT 59.742 34.615 5.99 5.99 37.50 3.56
474 497 7.647715 ACATAATTTAGTTCACCGCATAATTGC 59.352 33.333 0.00 0.00 45.78 3.56
505 528 6.039382 GGTAATTATCCAATTCAAGGCGAAGT 59.961 38.462 0.00 0.00 36.95 3.01
509 532 6.208644 CAAGGTAATTATCCAATTCAAGGCG 58.791 40.000 0.00 0.00 35.88 5.52
510 533 6.098266 ACCAAGGTAATTATCCAATTCAAGGC 59.902 38.462 0.00 0.00 35.88 4.35
511 534 7.660030 ACCAAGGTAATTATCCAATTCAAGG 57.340 36.000 0.00 0.00 35.88 3.61
512 535 9.586435 GAAACCAAGGTAATTATCCAATTCAAG 57.414 33.333 0.00 0.00 35.88 3.02
513 536 9.094578 TGAAACCAAGGTAATTATCCAATTCAA 57.905 29.630 0.00 0.00 35.88 2.69
514 537 8.657387 TGAAACCAAGGTAATTATCCAATTCA 57.343 30.769 0.00 0.00 35.88 2.57
515 538 9.750125 GATGAAACCAAGGTAATTATCCAATTC 57.250 33.333 0.00 0.00 35.88 2.17
516 539 9.492730 AGATGAAACCAAGGTAATTATCCAATT 57.507 29.630 0.00 0.00 38.02 2.32
517 540 9.492730 AAGATGAAACCAAGGTAATTATCCAAT 57.507 29.630 0.00 0.00 0.00 3.16
518 541 8.893563 AAGATGAAACCAAGGTAATTATCCAA 57.106 30.769 0.00 0.00 0.00 3.53
519 542 8.893563 AAAGATGAAACCAAGGTAATTATCCA 57.106 30.769 0.00 0.00 0.00 3.41
520 543 9.586435 CAAAAGATGAAACCAAGGTAATTATCC 57.414 33.333 0.00 0.00 0.00 2.59
537 560 5.585844 TGCGCTTATCTGATTCAAAAGATGA 59.414 36.000 9.73 0.00 34.91 2.92
538 561 5.813717 TGCGCTTATCTGATTCAAAAGATG 58.186 37.500 9.73 0.00 34.91 2.90
539 562 6.441093 TTGCGCTTATCTGATTCAAAAGAT 57.559 33.333 9.73 0.00 37.01 2.40
540 563 5.163723 CCTTGCGCTTATCTGATTCAAAAGA 60.164 40.000 9.73 0.00 0.00 2.52
541 564 5.032863 CCTTGCGCTTATCTGATTCAAAAG 58.967 41.667 9.73 0.00 0.00 2.27
542 565 4.699735 TCCTTGCGCTTATCTGATTCAAAA 59.300 37.500 9.73 0.00 0.00 2.44
543 566 4.260985 TCCTTGCGCTTATCTGATTCAAA 58.739 39.130 9.73 0.00 0.00 2.69
544 567 3.872696 TCCTTGCGCTTATCTGATTCAA 58.127 40.909 9.73 0.00 0.00 2.69
545 568 3.541996 TCCTTGCGCTTATCTGATTCA 57.458 42.857 9.73 0.00 0.00 2.57
546 569 5.008019 TGAATTCCTTGCGCTTATCTGATTC 59.992 40.000 9.73 10.16 0.00 2.52
547 570 4.883585 TGAATTCCTTGCGCTTATCTGATT 59.116 37.500 9.73 0.26 0.00 2.57
548 571 4.454678 TGAATTCCTTGCGCTTATCTGAT 58.545 39.130 9.73 0.00 0.00 2.90
549 572 3.872696 TGAATTCCTTGCGCTTATCTGA 58.127 40.909 9.73 0.00 0.00 3.27
550 573 4.621068 TTGAATTCCTTGCGCTTATCTG 57.379 40.909 9.73 0.00 0.00 2.90
551 574 6.058183 ACTATTGAATTCCTTGCGCTTATCT 58.942 36.000 9.73 0.00 0.00 1.98
552 575 6.305693 ACTATTGAATTCCTTGCGCTTATC 57.694 37.500 9.73 0.00 0.00 1.75
553 576 6.699575 AACTATTGAATTCCTTGCGCTTAT 57.300 33.333 9.73 0.00 0.00 1.73
554 577 6.037830 GGTAACTATTGAATTCCTTGCGCTTA 59.962 38.462 9.73 0.00 0.00 3.09
555 578 5.163652 GGTAACTATTGAATTCCTTGCGCTT 60.164 40.000 9.73 0.00 0.00 4.68
556 579 4.335594 GGTAACTATTGAATTCCTTGCGCT 59.664 41.667 9.73 0.00 0.00 5.92
557 580 4.598062 GGTAACTATTGAATTCCTTGCGC 58.402 43.478 0.00 0.00 0.00 6.09
558 581 4.331717 ACGGTAACTATTGAATTCCTTGCG 59.668 41.667 2.27 0.00 0.00 4.85
559 582 5.448632 CCACGGTAACTATTGAATTCCTTGC 60.449 44.000 2.27 0.00 0.00 4.01
560 583 5.646360 ACCACGGTAACTATTGAATTCCTTG 59.354 40.000 2.27 0.00 0.00 3.61
561 584 5.812286 ACCACGGTAACTATTGAATTCCTT 58.188 37.500 2.27 0.00 0.00 3.36
562 585 5.431179 ACCACGGTAACTATTGAATTCCT 57.569 39.130 2.27 0.00 0.00 3.36
563 586 5.675323 GCAACCACGGTAACTATTGAATTCC 60.675 44.000 2.27 0.00 0.00 3.01
564 587 5.106475 TGCAACCACGGTAACTATTGAATTC 60.106 40.000 0.00 0.00 0.00 2.17
565 588 4.762765 TGCAACCACGGTAACTATTGAATT 59.237 37.500 0.00 0.00 0.00 2.17
566 589 4.328536 TGCAACCACGGTAACTATTGAAT 58.671 39.130 0.00 0.00 0.00 2.57
567 590 3.741249 TGCAACCACGGTAACTATTGAA 58.259 40.909 0.00 0.00 0.00 2.69
568 591 3.404224 TGCAACCACGGTAACTATTGA 57.596 42.857 0.00 0.00 0.00 2.57
569 592 4.695217 AATGCAACCACGGTAACTATTG 57.305 40.909 0.00 0.00 0.00 1.90
570 593 5.465935 CAAAATGCAACCACGGTAACTATT 58.534 37.500 0.00 0.00 0.00 1.73
571 594 4.082463 CCAAAATGCAACCACGGTAACTAT 60.082 41.667 0.00 0.00 0.00 2.12
572 595 3.253677 CCAAAATGCAACCACGGTAACTA 59.746 43.478 0.00 0.00 0.00 2.24
573 596 2.035321 CCAAAATGCAACCACGGTAACT 59.965 45.455 0.00 0.00 0.00 2.24
574 597 2.223852 ACCAAAATGCAACCACGGTAAC 60.224 45.455 0.00 0.00 0.00 2.50
575 598 2.032620 ACCAAAATGCAACCACGGTAA 58.967 42.857 0.00 0.00 0.00 2.85
576 599 1.338337 CACCAAAATGCAACCACGGTA 59.662 47.619 0.00 0.00 0.00 4.02
577 600 0.103937 CACCAAAATGCAACCACGGT 59.896 50.000 0.00 0.00 0.00 4.83
578 601 0.387202 TCACCAAAATGCAACCACGG 59.613 50.000 0.00 0.00 0.00 4.94
579 602 2.060284 CATCACCAAAATGCAACCACG 58.940 47.619 0.00 0.00 0.00 4.94
580 603 3.383620 TCATCACCAAAATGCAACCAC 57.616 42.857 0.00 0.00 0.00 4.16
581 604 5.936187 ATATCATCACCAAAATGCAACCA 57.064 34.783 0.00 0.00 0.00 3.67
582 605 8.891671 AAATATATCATCACCAAAATGCAACC 57.108 30.769 0.00 0.00 0.00 3.77
685 708 9.945633 ACCCCCTATTGTTACAATATAAAACAT 57.054 29.630 16.83 0.00 33.44 2.71
692 715 7.942894 GCTCTTTACCCCCTATTGTTACAATAT 59.057 37.037 16.83 5.95 0.00 1.28
693 716 7.128263 AGCTCTTTACCCCCTATTGTTACAATA 59.872 37.037 15.82 15.82 0.00 1.90
694 717 6.069029 AGCTCTTTACCCCCTATTGTTACAAT 60.069 38.462 15.22 15.22 0.00 2.71
695 718 5.252164 AGCTCTTTACCCCCTATTGTTACAA 59.748 40.000 0.00 0.00 0.00 2.41
696 719 4.786454 AGCTCTTTACCCCCTATTGTTACA 59.214 41.667 0.00 0.00 0.00 2.41
697 720 5.130643 AGAGCTCTTTACCCCCTATTGTTAC 59.869 44.000 11.45 0.00 0.00 2.50
698 721 5.286221 AGAGCTCTTTACCCCCTATTGTTA 58.714 41.667 11.45 0.00 0.00 2.41
699 722 4.112331 AGAGCTCTTTACCCCCTATTGTT 58.888 43.478 11.45 0.00 0.00 2.83
700 723 3.737263 AGAGCTCTTTACCCCCTATTGT 58.263 45.455 11.45 0.00 0.00 2.71
701 724 4.455606 CAAGAGCTCTTTACCCCCTATTG 58.544 47.826 26.44 7.72 33.11 1.90
702 725 3.459969 CCAAGAGCTCTTTACCCCCTATT 59.540 47.826 26.44 0.00 33.11 1.73
703 726 3.049344 CCAAGAGCTCTTTACCCCCTAT 58.951 50.000 26.44 0.00 33.11 2.57
704 727 2.225805 ACCAAGAGCTCTTTACCCCCTA 60.226 50.000 26.44 0.00 33.11 3.53
705 728 1.290134 CCAAGAGCTCTTTACCCCCT 58.710 55.000 26.44 0.00 33.11 4.79
706 729 0.992695 ACCAAGAGCTCTTTACCCCC 59.007 55.000 26.44 0.00 33.11 5.40
707 730 2.039879 TCAACCAAGAGCTCTTTACCCC 59.960 50.000 26.44 0.00 33.11 4.95
708 731 3.418684 TCAACCAAGAGCTCTTTACCC 57.581 47.619 26.44 0.00 33.11 3.69
709 732 5.966742 AAATCAACCAAGAGCTCTTTACC 57.033 39.130 26.44 0.00 33.11 2.85
710 733 8.499403 AGATAAATCAACCAAGAGCTCTTTAC 57.501 34.615 26.44 8.55 33.11 2.01
711 734 9.520515 AAAGATAAATCAACCAAGAGCTCTTTA 57.479 29.630 26.44 13.71 33.11 1.85
712 735 8.302438 CAAAGATAAATCAACCAAGAGCTCTTT 58.698 33.333 26.44 10.67 33.11 2.52
713 736 7.094032 CCAAAGATAAATCAACCAAGAGCTCTT 60.094 37.037 23.49 23.49 36.45 2.85
714 737 6.376581 CCAAAGATAAATCAACCAAGAGCTCT 59.623 38.462 11.45 11.45 0.00 4.09
715 738 6.405176 CCCAAAGATAAATCAACCAAGAGCTC 60.405 42.308 5.27 5.27 0.00 4.09
716 739 5.420104 CCCAAAGATAAATCAACCAAGAGCT 59.580 40.000 0.00 0.00 0.00 4.09
717 740 5.418840 TCCCAAAGATAAATCAACCAAGAGC 59.581 40.000 0.00 0.00 0.00 4.09
718 741 6.405176 GCTCCCAAAGATAAATCAACCAAGAG 60.405 42.308 0.00 0.00 0.00 2.85
719 742 5.418840 GCTCCCAAAGATAAATCAACCAAGA 59.581 40.000 0.00 0.00 0.00 3.02
720 743 5.185635 TGCTCCCAAAGATAAATCAACCAAG 59.814 40.000 0.00 0.00 0.00 3.61
721 744 5.083122 TGCTCCCAAAGATAAATCAACCAA 58.917 37.500 0.00 0.00 0.00 3.67
722 745 4.671831 TGCTCCCAAAGATAAATCAACCA 58.328 39.130 0.00 0.00 0.00 3.67
723 746 5.360714 TCATGCTCCCAAAGATAAATCAACC 59.639 40.000 0.00 0.00 0.00 3.77
724 747 6.268566 GTCATGCTCCCAAAGATAAATCAAC 58.731 40.000 0.00 0.00 0.00 3.18
725 748 5.360714 GGTCATGCTCCCAAAGATAAATCAA 59.639 40.000 0.00 0.00 0.00 2.57
726 749 4.889409 GGTCATGCTCCCAAAGATAAATCA 59.111 41.667 0.00 0.00 0.00 2.57
727 750 5.136105 AGGTCATGCTCCCAAAGATAAATC 58.864 41.667 3.68 0.00 0.00 2.17
728 751 5.134725 AGGTCATGCTCCCAAAGATAAAT 57.865 39.130 3.68 0.00 0.00 1.40
729 752 4.591321 AGGTCATGCTCCCAAAGATAAA 57.409 40.909 3.68 0.00 0.00 1.40
730 753 5.708736 TTAGGTCATGCTCCCAAAGATAA 57.291 39.130 3.68 0.00 0.00 1.75
731 754 5.708736 TTTAGGTCATGCTCCCAAAGATA 57.291 39.130 3.68 0.00 0.00 1.98
732 755 4.591321 TTTAGGTCATGCTCCCAAAGAT 57.409 40.909 3.68 0.00 0.00 2.40
733 756 4.591321 ATTTAGGTCATGCTCCCAAAGA 57.409 40.909 3.68 0.00 0.00 2.52
734 757 7.884877 TGATATATTTAGGTCATGCTCCCAAAG 59.115 37.037 3.68 0.00 0.00 2.77
735 758 7.665559 GTGATATATTTAGGTCATGCTCCCAAA 59.334 37.037 3.68 3.77 0.00 3.28
736 759 7.168219 GTGATATATTTAGGTCATGCTCCCAA 58.832 38.462 3.68 0.00 0.00 4.12
737 760 6.296432 GGTGATATATTTAGGTCATGCTCCCA 60.296 42.308 3.68 0.00 0.00 4.37
738 761 6.116126 GGTGATATATTTAGGTCATGCTCCC 58.884 44.000 3.68 0.00 0.00 4.30
739 762 6.116126 GGGTGATATATTTAGGTCATGCTCC 58.884 44.000 0.00 0.00 0.00 4.70
740 763 6.711277 TGGGTGATATATTTAGGTCATGCTC 58.289 40.000 0.00 0.00 0.00 4.26
741 764 6.702449 TGGGTGATATATTTAGGTCATGCT 57.298 37.500 0.00 0.00 0.00 3.79
742 765 6.183360 GCATGGGTGATATATTTAGGTCATGC 60.183 42.308 16.28 16.28 44.00 4.06
743 766 6.885918 TGCATGGGTGATATATTTAGGTCATG 59.114 38.462 0.00 0.00 33.57 3.07
744 767 7.031415 TGCATGGGTGATATATTTAGGTCAT 57.969 36.000 0.00 0.00 0.00 3.06
745 768 6.446909 TGCATGGGTGATATATTTAGGTCA 57.553 37.500 0.00 0.00 0.00 4.02
746 769 8.046708 TGTATGCATGGGTGATATATTTAGGTC 58.953 37.037 10.16 0.00 0.00 3.85
747 770 7.927788 TGTATGCATGGGTGATATATTTAGGT 58.072 34.615 10.16 0.00 0.00 3.08
748 771 8.843262 CATGTATGCATGGGTGATATATTTAGG 58.157 37.037 15.36 0.00 46.47 2.69
764 787 6.000219 GGGAGAACAATAGTCATGTATGCAT 59.000 40.000 3.79 3.79 35.32 3.96
765 788 5.368145 GGGAGAACAATAGTCATGTATGCA 58.632 41.667 0.00 0.00 0.00 3.96
766 789 4.449068 CGGGAGAACAATAGTCATGTATGC 59.551 45.833 0.00 0.00 0.00 3.14
767 790 5.601662 ACGGGAGAACAATAGTCATGTATG 58.398 41.667 0.00 0.00 0.00 2.39
768 791 5.871396 ACGGGAGAACAATAGTCATGTAT 57.129 39.130 0.00 0.00 0.00 2.29
769 792 5.416083 CAACGGGAGAACAATAGTCATGTA 58.584 41.667 0.00 0.00 0.00 2.29
770 793 4.253685 CAACGGGAGAACAATAGTCATGT 58.746 43.478 0.00 0.00 0.00 3.21
771 794 3.063997 GCAACGGGAGAACAATAGTCATG 59.936 47.826 0.00 0.00 0.00 3.07
772 795 3.270877 GCAACGGGAGAACAATAGTCAT 58.729 45.455 0.00 0.00 0.00 3.06
773 796 2.037902 TGCAACGGGAGAACAATAGTCA 59.962 45.455 0.00 0.00 0.00 3.41
774 797 2.695359 TGCAACGGGAGAACAATAGTC 58.305 47.619 0.00 0.00 0.00 2.59
775 798 2.812011 GTTGCAACGGGAGAACAATAGT 59.188 45.455 14.90 0.00 0.00 2.12
776 799 3.471495 GTTGCAACGGGAGAACAATAG 57.529 47.619 14.90 0.00 0.00 1.73
792 815 5.451908 ACTATATAATTGCATGTGCGTTGC 58.548 37.500 0.01 0.00 45.83 4.17
793 816 9.444534 TTTAACTATATAATTGCATGTGCGTTG 57.555 29.630 0.01 0.00 45.83 4.10
794 817 9.663904 CTTTAACTATATAATTGCATGTGCGTT 57.336 29.630 0.01 1.15 45.83 4.84
795 818 8.836413 ACTTTAACTATATAATTGCATGTGCGT 58.164 29.630 0.01 0.00 45.83 5.24
807 830 9.333724 GCTTGCCCACTTACTTTAACTATATAA 57.666 33.333 0.00 0.00 0.00 0.98
808 831 7.654520 CGCTTGCCCACTTACTTTAACTATATA 59.345 37.037 0.00 0.00 0.00 0.86
809 832 6.482308 CGCTTGCCCACTTACTTTAACTATAT 59.518 38.462 0.00 0.00 0.00 0.86
810 833 5.813672 CGCTTGCCCACTTACTTTAACTATA 59.186 40.000 0.00 0.00 0.00 1.31
811 834 4.634443 CGCTTGCCCACTTACTTTAACTAT 59.366 41.667 0.00 0.00 0.00 2.12
812 835 3.998341 CGCTTGCCCACTTACTTTAACTA 59.002 43.478 0.00 0.00 0.00 2.24
813 836 2.812011 CGCTTGCCCACTTACTTTAACT 59.188 45.455 0.00 0.00 0.00 2.24
814 837 2.809696 TCGCTTGCCCACTTACTTTAAC 59.190 45.455 0.00 0.00 0.00 2.01
820 843 0.727398 GATGTCGCTTGCCCACTTAC 59.273 55.000 0.00 0.00 0.00 2.34
837 860 1.410648 GGTGATGCATGGGTCAAGGAT 60.411 52.381 2.46 0.00 0.00 3.24
839 862 1.039233 GGGTGATGCATGGGTCAAGG 61.039 60.000 2.46 0.00 0.00 3.61
850 873 2.441532 AGCTGCCATGGGTGATGC 60.442 61.111 15.13 0.00 0.00 3.91
851 874 2.782222 GCAGCTGCCATGGGTGATG 61.782 63.158 28.76 2.69 34.56 3.07
852 875 2.441532 GCAGCTGCCATGGGTGAT 60.442 61.111 28.76 0.00 34.56 3.06
853 876 3.969119 TGCAGCTGCCATGGGTGA 61.969 61.111 34.64 11.80 41.18 4.02
872 895 1.070134 TCTTATCATACGGTGCAGGCC 59.930 52.381 0.00 0.00 0.00 5.19
873 896 2.408050 CTCTTATCATACGGTGCAGGC 58.592 52.381 0.00 0.00 0.00 4.85
874 897 2.224042 TGCTCTTATCATACGGTGCAGG 60.224 50.000 0.00 0.00 0.00 4.85
875 898 3.097877 TGCTCTTATCATACGGTGCAG 57.902 47.619 0.00 0.00 0.00 4.41
876 899 3.751479 ATGCTCTTATCATACGGTGCA 57.249 42.857 0.00 0.00 33.79 4.57
877 900 5.470368 TCTTATGCTCTTATCATACGGTGC 58.530 41.667 0.00 0.00 0.00 5.01
879 902 7.030165 CGATTCTTATGCTCTTATCATACGGT 58.970 38.462 0.00 0.00 0.00 4.83
880 903 6.473778 CCGATTCTTATGCTCTTATCATACGG 59.526 42.308 0.00 0.00 30.40 4.02
881 904 7.008719 CACCGATTCTTATGCTCTTATCATACG 59.991 40.741 0.00 0.00 0.00 3.06
882 905 7.815068 ACACCGATTCTTATGCTCTTATCATAC 59.185 37.037 0.00 0.00 0.00 2.39
883 906 7.896811 ACACCGATTCTTATGCTCTTATCATA 58.103 34.615 0.00 0.00 0.00 2.15
884 907 6.763355 ACACCGATTCTTATGCTCTTATCAT 58.237 36.000 0.00 0.00 0.00 2.45
885 908 6.161855 ACACCGATTCTTATGCTCTTATCA 57.838 37.500 0.00 0.00 0.00 2.15
886 909 7.484035 AAACACCGATTCTTATGCTCTTATC 57.516 36.000 0.00 0.00 0.00 1.75
899 922 6.465084 AGCCCTCTTATATAAACACCGATTC 58.535 40.000 0.00 0.00 0.00 2.52
920 943 5.618561 GTGTTGCGCAGTATTATATTAGCC 58.381 41.667 11.31 0.00 0.00 3.93
928 958 1.722464 GTGTCGTGTTGCGCAGTATTA 59.278 47.619 11.31 0.00 41.07 0.98
929 959 0.511221 GTGTCGTGTTGCGCAGTATT 59.489 50.000 11.31 0.00 41.07 1.89
944 974 1.532868 GTGATGGTGAACTGCTGTGTC 59.467 52.381 0.00 0.00 0.00 3.67
945 975 1.141657 AGTGATGGTGAACTGCTGTGT 59.858 47.619 0.00 0.00 0.00 3.72
949 979 1.065854 GCCTAGTGATGGTGAACTGCT 60.066 52.381 0.00 0.00 0.00 4.24
988 1023 5.181009 AGACATTTTCATCTGCTTGATCGA 58.819 37.500 0.00 0.00 32.05 3.59
1014 1059 4.163427 TGTCCACTGATCCTTCTCTTTCT 58.837 43.478 0.00 0.00 0.00 2.52
1027 1072 2.689658 TCCTTCTTCCTTGTCCACTGA 58.310 47.619 0.00 0.00 0.00 3.41
1029 1074 2.234908 CGATCCTTCTTCCTTGTCCACT 59.765 50.000 0.00 0.00 0.00 4.00
1031 1076 2.028112 CACGATCCTTCTTCCTTGTCCA 60.028 50.000 0.00 0.00 0.00 4.02
1051 1096 2.437180 CGCAGCAGAAGCCATCCA 60.437 61.111 0.00 0.00 43.56 3.41
1131 1192 1.376424 CATGGAAGCACAGACGGCT 60.376 57.895 0.00 0.00 45.15 5.52
1135 1196 1.303561 TGGCCATGGAAGCACAGAC 60.304 57.895 18.40 0.00 0.00 3.51
1195 1269 4.109050 GGAAGAAGAAGATGCGTACTCTG 58.891 47.826 0.00 0.00 0.00 3.35
1224 1303 9.074576 TCGGAAGAGAATTATACTTGCTACATA 57.925 33.333 0.00 0.00 34.84 2.29
1228 1307 7.068348 ACAGTCGGAAGAGAATTATACTTGCTA 59.932 37.037 0.00 0.00 43.49 3.49
1229 1308 6.127310 ACAGTCGGAAGAGAATTATACTTGCT 60.127 38.462 0.00 0.00 43.49 3.91
1230 1309 6.043411 ACAGTCGGAAGAGAATTATACTTGC 58.957 40.000 0.00 0.00 43.49 4.01
1231 1310 6.697892 GGACAGTCGGAAGAGAATTATACTTG 59.302 42.308 0.00 0.00 43.49 3.16
1232 1311 6.380274 TGGACAGTCGGAAGAGAATTATACTT 59.620 38.462 0.00 0.00 43.49 2.24
1233 1312 5.892119 TGGACAGTCGGAAGAGAATTATACT 59.108 40.000 0.00 0.00 43.49 2.12
1234 1313 6.039493 TCTGGACAGTCGGAAGAGAATTATAC 59.961 42.308 0.00 0.00 43.49 1.47
1235 1314 6.039493 GTCTGGACAGTCGGAAGAGAATTATA 59.961 42.308 0.00 0.00 43.49 0.98
1312 1415 0.900182 ATCTCCACCTGCACGTCTGA 60.900 55.000 0.00 0.00 0.00 3.27
1314 1417 1.557099 TAATCTCCACCTGCACGTCT 58.443 50.000 0.00 0.00 0.00 4.18
1332 1435 0.322648 CGCTGAGGATGCCCATCATA 59.677 55.000 10.17 0.00 39.54 2.15
1411 1514 2.870161 CGCGAAGACGACGGTGAG 60.870 66.667 0.00 0.00 42.66 3.51
1545 1648 1.374252 CACCTCTGCCGTGTACACC 60.374 63.158 20.11 7.82 0.00 4.16
1608 1711 3.902218 GAGGATCCCCACATTGATGAAA 58.098 45.455 8.55 0.00 33.88 2.69
1623 1726 1.338655 GAGACGTAGCCAAGGAGGATC 59.661 57.143 0.00 0.00 41.22 3.36
1722 1825 2.434884 AACACCATGAGCGCGAGG 60.435 61.111 12.10 5.26 0.00 4.63
1911 2100 0.955919 CCTCGCCGCCTTTTCTCTTT 60.956 55.000 0.00 0.00 0.00 2.52
1937 2512 0.107459 GATGAGCTCCTTCCACACCC 60.107 60.000 12.15 0.00 0.00 4.61
1998 2573 0.462759 GGAAGAACTGGATGCCGAGG 60.463 60.000 0.00 0.00 0.00 4.63
2010 2585 2.383527 CGTCGCCTGCTGGAAGAAC 61.384 63.158 14.77 4.18 34.07 3.01
2452 3027 1.352352 CAAGGACAGGAAGGACATGGT 59.648 52.381 0.00 0.00 34.35 3.55
2493 3068 1.795768 CGTACAAGAAGAAGCTGCCA 58.204 50.000 0.00 0.00 0.00 4.92
2583 3158 2.158885 GCCGAAAAGCTTCCCTATCTCT 60.159 50.000 0.00 0.00 0.00 3.10
2624 3199 1.662446 GCGTGGTCTTCGGTTTCGA 60.662 57.895 0.00 0.00 44.44 3.71
2625 3200 2.664436 GGCGTGGTCTTCGGTTTCG 61.664 63.158 0.00 0.00 37.82 3.46
2626 3201 1.595929 TGGCGTGGTCTTCGGTTTC 60.596 57.895 0.00 0.00 0.00 2.78
2629 3204 4.309950 GGTGGCGTGGTCTTCGGT 62.310 66.667 0.00 0.00 0.00 4.69
2657 3235 5.408356 GCTAGTTCATCTCCGTTACTTTCA 58.592 41.667 0.00 0.00 0.00 2.69
2665 3249 1.134560 GGTTCGCTAGTTCATCTCCGT 59.865 52.381 0.00 0.00 0.00 4.69
2666 3250 1.134367 TGGTTCGCTAGTTCATCTCCG 59.866 52.381 0.00 0.00 0.00 4.63
2707 3291 2.423577 ACGGTTTTCCAGTAGTGATGC 58.576 47.619 0.00 0.00 40.70 3.91
2708 3292 5.432885 AAAACGGTTTTCCAGTAGTGATG 57.567 39.130 12.86 0.00 40.70 3.07
2709 3293 6.017687 GTGTAAAACGGTTTTCCAGTAGTGAT 60.018 38.462 21.09 0.00 40.70 3.06
2710 3294 5.294060 GTGTAAAACGGTTTTCCAGTAGTGA 59.706 40.000 21.09 0.00 40.70 3.41
2711 3295 5.064962 TGTGTAAAACGGTTTTCCAGTAGTG 59.935 40.000 21.09 0.00 40.70 2.74
2712 3296 5.184711 TGTGTAAAACGGTTTTCCAGTAGT 58.815 37.500 21.09 0.00 40.70 2.73
2713 3297 5.524646 TCTGTGTAAAACGGTTTTCCAGTAG 59.475 40.000 21.09 16.04 40.70 2.57
2714 3298 5.426504 TCTGTGTAAAACGGTTTTCCAGTA 58.573 37.500 21.09 8.42 40.70 2.74
2715 3299 4.263435 TCTGTGTAAAACGGTTTTCCAGT 58.737 39.130 21.09 1.20 40.70 4.00
2716 3300 4.334481 ACTCTGTGTAAAACGGTTTTCCAG 59.666 41.667 21.09 21.64 40.70 3.86
2717 3301 4.095185 CACTCTGTGTAAAACGGTTTTCCA 59.905 41.667 21.09 14.13 40.70 3.53
2718 3302 4.095334 ACACTCTGTGTAAAACGGTTTTCC 59.905 41.667 21.09 11.65 45.56 3.13
2719 3303 5.225899 ACACTCTGTGTAAAACGGTTTTC 57.774 39.130 21.09 13.50 45.56 2.29
2720 3304 5.632244 AACACTCTGTGTAAAACGGTTTT 57.368 34.783 21.20 21.20 46.79 2.43
2721 3305 5.632244 AAACACTCTGTGTAAAACGGTTT 57.368 34.783 2.90 2.90 46.79 3.27
2722 3306 5.395642 CAAAACACTCTGTGTAAAACGGTT 58.604 37.500 3.68 0.00 46.79 4.44
2723 3307 4.673320 GCAAAACACTCTGTGTAAAACGGT 60.673 41.667 3.68 0.00 46.79 4.83
2724 3308 3.789224 GCAAAACACTCTGTGTAAAACGG 59.211 43.478 3.68 0.00 46.79 4.44
2725 3309 4.658071 AGCAAAACACTCTGTGTAAAACG 58.342 39.130 3.68 0.00 46.79 3.60
2726 3310 5.969435 GGTAGCAAAACACTCTGTGTAAAAC 59.031 40.000 3.68 0.00 46.79 2.43
2727 3311 5.648526 TGGTAGCAAAACACTCTGTGTAAAA 59.351 36.000 3.68 0.00 46.79 1.52
2728 3312 5.186942 TGGTAGCAAAACACTCTGTGTAAA 58.813 37.500 3.68 0.00 46.79 2.01
2729 3313 4.771903 TGGTAGCAAAACACTCTGTGTAA 58.228 39.130 3.68 0.00 46.79 2.41
2730 3314 4.409718 TGGTAGCAAAACACTCTGTGTA 57.590 40.909 3.68 0.00 46.79 2.90
2732 3316 4.143115 CGTATGGTAGCAAAACACTCTGTG 60.143 45.833 0.00 0.00 39.75 3.66
2733 3317 3.994392 CGTATGGTAGCAAAACACTCTGT 59.006 43.478 0.00 0.00 0.00 3.41
2734 3318 3.181520 GCGTATGGTAGCAAAACACTCTG 60.182 47.826 0.00 0.00 0.00 3.35
2735 3319 3.000727 GCGTATGGTAGCAAAACACTCT 58.999 45.455 0.00 0.00 0.00 3.24
2736 3320 2.095372 GGCGTATGGTAGCAAAACACTC 59.905 50.000 0.00 0.00 34.54 3.51
2737 3321 2.081462 GGCGTATGGTAGCAAAACACT 58.919 47.619 0.00 0.00 34.54 3.55
2738 3322 1.201987 CGGCGTATGGTAGCAAAACAC 60.202 52.381 0.00 0.00 34.54 3.32
2739 3323 1.080298 CGGCGTATGGTAGCAAAACA 58.920 50.000 0.00 0.00 34.54 2.83
2740 3324 1.326548 CTCGGCGTATGGTAGCAAAAC 59.673 52.381 6.85 0.00 34.54 2.43
2741 3325 1.205179 TCTCGGCGTATGGTAGCAAAA 59.795 47.619 6.85 0.00 34.54 2.44
2742 3326 0.818938 TCTCGGCGTATGGTAGCAAA 59.181 50.000 6.85 0.00 34.54 3.68
2743 3327 1.037493 ATCTCGGCGTATGGTAGCAA 58.963 50.000 6.85 0.00 34.54 3.91
2744 3328 1.900245 TATCTCGGCGTATGGTAGCA 58.100 50.000 6.85 0.00 34.54 3.49
2745 3329 3.293311 TTTATCTCGGCGTATGGTAGC 57.707 47.619 6.85 0.00 0.00 3.58
2764 3348 0.663153 AGCAGCGCGAAAGTCTTTTT 59.337 45.000 12.10 0.00 0.00 1.94
2765 3349 0.663153 AAGCAGCGCGAAAGTCTTTT 59.337 45.000 12.10 0.00 0.00 2.27
2766 3350 0.663153 AAAGCAGCGCGAAAGTCTTT 59.337 45.000 12.10 8.31 0.00 2.52
2767 3351 1.508632 TAAAGCAGCGCGAAAGTCTT 58.491 45.000 12.10 1.68 0.00 3.01
2768 3352 1.726853 ATAAAGCAGCGCGAAAGTCT 58.273 45.000 12.10 0.00 0.00 3.24
2769 3353 2.527442 AATAAAGCAGCGCGAAAGTC 57.473 45.000 12.10 0.00 0.00 3.01
2770 3354 5.924475 ATATAATAAAGCAGCGCGAAAGT 57.076 34.783 12.10 0.00 0.00 2.66
2771 3355 7.050281 AGTATATAATAAAGCAGCGCGAAAG 57.950 36.000 12.10 0.00 0.00 2.62
2772 3356 7.201410 GCTAGTATATAATAAAGCAGCGCGAAA 60.201 37.037 12.10 0.00 0.00 3.46
2773 3357 6.252869 GCTAGTATATAATAAAGCAGCGCGAA 59.747 38.462 12.10 0.00 0.00 4.70
2774 3358 5.742453 GCTAGTATATAATAAAGCAGCGCGA 59.258 40.000 12.10 0.00 0.00 5.87
2775 3359 5.744345 AGCTAGTATATAATAAAGCAGCGCG 59.256 40.000 0.00 0.00 32.42 6.86
2776 3360 6.531948 ACAGCTAGTATATAATAAAGCAGCGC 59.468 38.462 0.00 0.00 32.42 5.92
2777 3361 9.737427 ATACAGCTAGTATATAATAAAGCAGCG 57.263 33.333 7.49 1.88 41.59 5.18
2780 3364 9.817809 GGCATACAGCTAGTATATAATAAAGCA 57.182 33.333 7.49 0.00 41.47 3.91
2781 3365 9.262358 GGGCATACAGCTAGTATATAATAAAGC 57.738 37.037 8.03 0.00 41.47 3.51
2782 3366 9.464714 CGGGCATACAGCTAGTATATAATAAAG 57.535 37.037 8.03 0.00 41.47 1.85
2783 3367 7.924412 GCGGGCATACAGCTAGTATATAATAAA 59.076 37.037 8.03 0.00 41.47 1.40
2784 3368 7.431249 GCGGGCATACAGCTAGTATATAATAA 58.569 38.462 8.03 0.00 41.47 1.40
2785 3369 6.293790 CGCGGGCATACAGCTAGTATATAATA 60.294 42.308 0.00 0.00 41.47 0.98
2786 3370 5.507482 CGCGGGCATACAGCTAGTATATAAT 60.507 44.000 0.00 0.00 41.47 1.28
2787 3371 4.201980 CGCGGGCATACAGCTAGTATATAA 60.202 45.833 0.00 0.00 41.47 0.98
2788 3372 3.314357 CGCGGGCATACAGCTAGTATATA 59.686 47.826 0.00 0.00 41.47 0.86
2789 3373 2.099263 CGCGGGCATACAGCTAGTATAT 59.901 50.000 0.00 0.00 41.47 0.86
2790 3374 1.471287 CGCGGGCATACAGCTAGTATA 59.529 52.381 0.00 0.00 41.47 1.47
2791 3375 0.243907 CGCGGGCATACAGCTAGTAT 59.756 55.000 0.00 0.00 44.20 2.12
2801 3385 4.144703 TGGTAACGCGCGGGCATA 62.145 61.111 35.22 17.88 39.92 3.14
2815 3399 5.553123 TGTCTATGTTTATTGTTCCGTGGT 58.447 37.500 0.00 0.00 0.00 4.16
2923 3510 7.914346 TGTTTGATTTGTTTTGAATTGATTGCC 59.086 29.630 0.00 0.00 0.00 4.52
2958 3545 1.409427 GAACGGAGGGAGTACATGGAG 59.591 57.143 0.00 0.00 0.00 3.86
2967 3711 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2968 3712 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2969 3713 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2970 3714 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2971 3715 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2972 3716 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2973 3717 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2986 3730 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2987 3731 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2988 3732 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2989 3733 8.594881 TCACTTGTTGAAATCTCTAGAAAGAC 57.405 34.615 0.00 0.00 0.00 3.01
2990 3734 9.784531 AATCACTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 37.92 2.52
2993 3737 9.996554 TGTAATCACTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 37.92 2.10
2997 3741 8.873830 CGTATGTAATCACTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 37.92 3.10
2998 3742 8.116753 CCGTATGTAATCACTTGTTGAAATCTC 58.883 37.037 0.00 0.00 37.92 2.75
2999 3743 7.822334 TCCGTATGTAATCACTTGTTGAAATCT 59.178 33.333 0.00 0.00 37.92 2.40
3000 3744 7.970384 TCCGTATGTAATCACTTGTTGAAATC 58.030 34.615 0.00 0.00 37.92 2.17
3001 3745 7.606456 ACTCCGTATGTAATCACTTGTTGAAAT 59.394 33.333 0.00 0.00 37.92 2.17
3002 3746 6.932400 ACTCCGTATGTAATCACTTGTTGAAA 59.068 34.615 0.00 0.00 37.92 2.69
3003 3747 6.460781 ACTCCGTATGTAATCACTTGTTGAA 58.539 36.000 0.00 0.00 37.92 2.69
3004 3748 6.032956 ACTCCGTATGTAATCACTTGTTGA 57.967 37.500 0.00 0.00 39.11 3.18
3005 3749 7.821595 TTACTCCGTATGTAATCACTTGTTG 57.178 36.000 0.00 0.00 0.00 3.33
3006 3750 8.836268 TTTTACTCCGTATGTAATCACTTGTT 57.164 30.769 0.00 0.00 31.13 2.83
3007 3751 8.879759 CATTTTACTCCGTATGTAATCACTTGT 58.120 33.333 0.00 0.00 31.13 3.16
3008 3752 9.093970 TCATTTTACTCCGTATGTAATCACTTG 57.906 33.333 0.00 0.00 31.13 3.16
3009 3753 9.314321 CTCATTTTACTCCGTATGTAATCACTT 57.686 33.333 0.00 0.00 31.13 3.16
3010 3754 8.475639 ACTCATTTTACTCCGTATGTAATCACT 58.524 33.333 0.00 0.00 31.13 3.41
3011 3755 8.540492 CACTCATTTTACTCCGTATGTAATCAC 58.460 37.037 0.00 0.00 31.13 3.06
3012 3756 8.471609 TCACTCATTTTACTCCGTATGTAATCA 58.528 33.333 0.00 0.00 31.13 2.57
3013 3757 8.867112 TCACTCATTTTACTCCGTATGTAATC 57.133 34.615 0.00 0.00 31.13 1.75
3014 3758 9.832445 ATTCACTCATTTTACTCCGTATGTAAT 57.168 29.630 0.00 0.00 31.13 1.89
3015 3759 9.309516 GATTCACTCATTTTACTCCGTATGTAA 57.690 33.333 0.00 0.00 0.00 2.41
3016 3760 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
3017 3761 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
3018 3762 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
3019 3763 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
3020 3764 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
3021 3765 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
3022 3766 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
3077 3821 9.449719 TCTTTTAGAGATTTCAAATGGACTACC 57.550 33.333 0.00 0.00 0.00 3.18
3080 3824 8.924511 TGTCTTTTAGAGATTTCAAATGGACT 57.075 30.769 0.00 0.00 36.61 3.85
3081 3825 9.965824 TTTGTCTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 36.61 4.02
3095 3839 9.947433 TCCGTTCCTAAATATTTGTCTTTTAGA 57.053 29.630 11.05 0.00 35.79 2.10
3097 3841 9.169592 CCTCCGTTCCTAAATATTTGTCTTTTA 57.830 33.333 11.05 0.00 0.00 1.52
3098 3842 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3099 3843 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3100 3844 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3101 3845 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3102 3846 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3103 3847 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3104 3848 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3105 3849 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3106 3850 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
3107 3851 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3108 3852 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3109 3853 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3110 3854 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3111 3855 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
3112 3856 3.463048 AAACTACTCCCTCCGTTCCTA 57.537 47.619 0.00 0.00 0.00 2.94
3113 3857 2.322339 AAACTACTCCCTCCGTTCCT 57.678 50.000 0.00 0.00 0.00 3.36
3114 3858 3.413846 AAAAACTACTCCCTCCGTTCC 57.586 47.619 0.00 0.00 0.00 3.62
3160 3904 8.961294 ACTACCTACTGTACACTCTAATACTG 57.039 38.462 0.00 0.00 0.00 2.74
3162 3906 9.171877 ACAACTACCTACTGTACACTCTAATAC 57.828 37.037 0.00 0.00 0.00 1.89
3163 3907 9.745018 AACAACTACCTACTGTACACTCTAATA 57.255 33.333 0.00 0.00 0.00 0.98
3183 3927 6.068670 ACATTTTACTCCTTAGCCAACAACT 58.931 36.000 0.00 0.00 0.00 3.16
3186 3930 6.013206 TCCTACATTTTACTCCTTAGCCAACA 60.013 38.462 0.00 0.00 0.00 3.33
3304 4049 2.619147 CAACTGACTCTGCTCATCCAG 58.381 52.381 0.00 0.00 0.00 3.86
3335 4081 5.046304 CCTCCTGAATTTGGACACTAAGAGA 60.046 44.000 0.00 0.00 0.00 3.10
3336 4082 5.046304 TCCTCCTGAATTTGGACACTAAGAG 60.046 44.000 0.00 0.00 0.00 2.85
3367 4116 1.278238 CACCAGCGGAAGTACGAATC 58.722 55.000 1.50 0.00 35.47 2.52
3447 4198 8.604640 TGGACAACAATAAAAGATACGTACAA 57.395 30.769 0.00 0.00 0.00 2.41
3449 4200 9.698617 GAATGGACAACAATAAAAGATACGTAC 57.301 33.333 0.00 0.00 0.00 3.67
3451 4202 8.450964 CAGAATGGACAACAATAAAAGATACGT 58.549 33.333 0.00 0.00 0.00 3.57
3452 4203 7.429340 GCAGAATGGACAACAATAAAAGATACG 59.571 37.037 0.00 0.00 35.86 3.06
3513 4264 3.448301 CCAATACCAATGCCATCAACTGT 59.552 43.478 0.00 0.00 0.00 3.55
3559 4310 3.269592 TCGGGATGGGATAATGGTAGT 57.730 47.619 0.00 0.00 0.00 2.73
3560 4311 4.202419 TGTTTCGGGATGGGATAATGGTAG 60.202 45.833 0.00 0.00 0.00 3.18
3626 4382 8.218338 AGTATTTTGAAGTGAGATGGCTATTG 57.782 34.615 0.00 0.00 0.00 1.90
3627 4383 8.814038 AAGTATTTTGAAGTGAGATGGCTATT 57.186 30.769 0.00 0.00 0.00 1.73
3628 4384 9.905713 TTAAGTATTTTGAAGTGAGATGGCTAT 57.094 29.630 0.00 0.00 0.00 2.97
3629 4385 9.733556 TTTAAGTATTTTGAAGTGAGATGGCTA 57.266 29.630 0.00 0.00 0.00 3.93
3630 4386 8.515414 GTTTAAGTATTTTGAAGTGAGATGGCT 58.485 33.333 0.00 0.00 0.00 4.75
3631 4387 8.515414 AGTTTAAGTATTTTGAAGTGAGATGGC 58.485 33.333 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.