Multiple sequence alignment - TraesCS3B01G096600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G096600 chr3B 100.000 2345 0 0 1 2345 64508653 64510997 0.000000e+00 4331
1 TraesCS3B01G096600 chr3B 93.031 1148 44 17 1085 2200 64414791 64413648 0.000000e+00 1644
2 TraesCS3B01G096600 chr3B 95.010 1042 42 4 1039 2077 64596332 64597366 0.000000e+00 1628
3 TraesCS3B01G096600 chr3B 100.000 396 0 0 2817 3212 64511469 64511864 0.000000e+00 732
4 TraesCS3B01G096600 chr3B 85.871 729 54 28 1 714 64416546 64415852 0.000000e+00 730
5 TraesCS3B01G096600 chr3B 85.547 256 25 7 745 995 64596081 64596329 1.140000e-64 257
6 TraesCS3B01G096600 chr3B 93.750 112 4 3 606 717 64595975 64596083 7.130000e-37 165
7 TraesCS3B01G096600 chr3A 85.943 1060 86 39 1 1033 52556323 52555300 0.000000e+00 1074
8 TraesCS3B01G096600 chr3A 89.632 733 52 8 1543 2251 52548983 52548251 0.000000e+00 911
9 TraesCS3B01G096600 chr3A 95.455 132 3 1 1390 1521 52555276 52555148 1.170000e-49 207
10 TraesCS3B01G096600 chr3D 86.736 573 43 25 1 564 40786999 40786451 9.850000e-170 606
11 TraesCS3B01G096600 chr3D 95.493 355 14 2 1704 2058 40785981 40785629 1.670000e-157 566
12 TraesCS3B01G096600 chr3D 86.341 205 16 4 2098 2290 40783698 40783494 2.510000e-51 213
13 TraesCS3B01G096600 chr3D 79.032 310 23 19 616 894 40786325 40786027 1.180000e-39 174
14 TraesCS3B01G096600 chr1D 96.855 159 5 0 3054 3212 359693533 359693375 1.900000e-67 267
15 TraesCS3B01G096600 chr1D 96.250 160 6 0 3053 3212 7424176 7424017 2.460000e-66 263
16 TraesCS3B01G096600 chr5D 95.210 167 6 2 3047 3212 494644932 494644767 2.460000e-66 263
17 TraesCS3B01G096600 chr5D 81.933 238 32 10 1275 1508 556619108 556618878 1.180000e-44 191
18 TraesCS3B01G096600 chr4B 96.250 160 6 0 3053 3212 575530170 575530329 2.460000e-66 263
19 TraesCS3B01G096600 chr4B 90.816 98 5 2 2956 3053 629905937 629906030 9.350000e-26 128
20 TraesCS3B01G096600 chr2B 95.181 166 8 0 3047 3212 153891068 153890903 2.460000e-66 263
21 TraesCS3B01G096600 chr2D 96.226 159 6 0 3054 3212 545049091 545048933 8.840000e-66 261
22 TraesCS3B01G096600 chr2D 87.000 100 5 2 2958 3053 43997576 43997671 4.380000e-19 106
23 TraesCS3B01G096600 chr1B 95.679 162 7 0 3051 3212 679334075 679333914 8.840000e-66 261
24 TraesCS3B01G096600 chr7D 95.122 164 8 0 3049 3212 203402124 203402287 3.180000e-65 259
25 TraesCS3B01G096600 chr7D 94.118 170 9 1 3043 3212 156079862 156079694 1.140000e-64 257
26 TraesCS3B01G096600 chr7D 87.500 104 7 4 2952 3054 575189428 575189526 7.280000e-22 115
27 TraesCS3B01G096600 chr4A 83.122 237 31 7 1275 1508 605136318 605136088 1.170000e-49 207
28 TraesCS3B01G096600 chr5B 82.353 238 31 10 1275 1508 710209635 710209405 2.530000e-46 196
29 TraesCS3B01G096600 chr7A 91.837 98 4 2 2956 3053 441112280 441112373 2.010000e-27 134
30 TraesCS3B01G096600 chr5A 90.816 98 5 3 2956 3053 601987090 601986997 9.350000e-26 128
31 TraesCS3B01G096600 chr2A 89.796 98 6 1 2956 3053 47836833 47836926 4.350000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G096600 chr3B 64508653 64511864 3211 False 2531.500000 4331 100.000000 1 3212 2 chr3B.!!$F1 3211
1 TraesCS3B01G096600 chr3B 64413648 64416546 2898 True 1187.000000 1644 89.451000 1 2200 2 chr3B.!!$R1 2199
2 TraesCS3B01G096600 chr3B 64595975 64597366 1391 False 683.333333 1628 91.435667 606 2077 3 chr3B.!!$F2 1471
3 TraesCS3B01G096600 chr3A 52548251 52548983 732 True 911.000000 911 89.632000 1543 2251 1 chr3A.!!$R1 708
4 TraesCS3B01G096600 chr3A 52555148 52556323 1175 True 640.500000 1074 90.699000 1 1521 2 chr3A.!!$R2 1520
5 TraesCS3B01G096600 chr3D 40783494 40786999 3505 True 389.750000 606 86.900500 1 2290 4 chr3D.!!$R1 2289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 802 0.1791 CGCTGCTGCCTGTACTGTAT 60.179 55.0 10.24 0.0 35.36 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2325 5115 0.107848 ATACAGTTGTAGGCGGGTGC 60.108 55.0 0.0 0.0 34.53 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 5.471456 TCTCGTACGTTTTCTCTACCTCTTT 59.529 40.000 16.05 0.00 0.00 2.52
166 191 1.288350 CTGATTGAGCTTGAGCCGAG 58.712 55.000 0.00 0.00 43.38 4.63
170 195 4.443266 GAGCTTGAGCCGAGCCGT 62.443 66.667 9.94 0.00 41.50 5.68
172 197 3.793144 GCTTGAGCCGAGCCGTTG 61.793 66.667 3.67 0.00 35.00 4.10
204 231 1.134521 TCTGGTGGTTGCCATATCGTC 60.135 52.381 0.00 0.00 37.96 4.20
401 428 0.315886 CCAAAAACGTAACCCTGCCC 59.684 55.000 0.00 0.00 0.00 5.36
467 498 6.995686 TCACTATAAATGGAAACTGTGTGTGT 59.004 34.615 0.00 0.00 0.00 3.72
468 499 7.041440 TCACTATAAATGGAAACTGTGTGTGTG 60.041 37.037 0.00 0.00 0.00 3.82
469 500 3.799281 AAATGGAAACTGTGTGTGTGG 57.201 42.857 0.00 0.00 0.00 4.17
470 501 2.727123 ATGGAAACTGTGTGTGTGGA 57.273 45.000 0.00 0.00 0.00 4.02
471 502 2.727123 TGGAAACTGTGTGTGTGGAT 57.273 45.000 0.00 0.00 0.00 3.41
472 503 2.296792 TGGAAACTGTGTGTGTGGATG 58.703 47.619 0.00 0.00 0.00 3.51
473 504 1.608590 GGAAACTGTGTGTGTGGATGG 59.391 52.381 0.00 0.00 0.00 3.51
474 505 2.571212 GAAACTGTGTGTGTGGATGGA 58.429 47.619 0.00 0.00 0.00 3.41
515 546 2.652496 GAGGCGTGCGACGATCTC 60.652 66.667 11.94 12.25 46.05 2.75
550 581 2.750237 GGCGCCCTACCAAACCAG 60.750 66.667 18.11 0.00 0.00 4.00
557 588 2.816337 GCCCTACCAAACCAGCAAGTAA 60.816 50.000 0.00 0.00 0.00 2.24
561 592 5.310451 CCTACCAAACCAGCAAGTAACTAA 58.690 41.667 0.00 0.00 0.00 2.24
564 595 4.820173 ACCAAACCAGCAAGTAACTAACTC 59.180 41.667 0.00 0.00 37.50 3.01
565 596 4.819630 CCAAACCAGCAAGTAACTAACTCA 59.180 41.667 0.00 0.00 37.50 3.41
566 597 5.298276 CCAAACCAGCAAGTAACTAACTCAA 59.702 40.000 0.00 0.00 37.50 3.02
567 598 6.430451 CAAACCAGCAAGTAACTAACTCAAG 58.570 40.000 0.00 0.00 37.50 3.02
568 599 4.065789 ACCAGCAAGTAACTAACTCAAGC 58.934 43.478 0.00 0.00 37.50 4.01
569 600 4.065088 CCAGCAAGTAACTAACTCAAGCA 58.935 43.478 0.00 0.00 37.50 3.91
570 601 4.153117 CCAGCAAGTAACTAACTCAAGCAG 59.847 45.833 0.00 0.00 37.50 4.24
571 602 3.748568 AGCAAGTAACTAACTCAAGCAGC 59.251 43.478 0.00 0.00 37.50 5.25
572 603 3.748568 GCAAGTAACTAACTCAAGCAGCT 59.251 43.478 0.00 0.00 37.50 4.24
574 605 5.163943 GCAAGTAACTAACTCAAGCAGCTAC 60.164 44.000 0.00 0.00 37.50 3.58
575 606 5.986501 AGTAACTAACTCAAGCAGCTACT 57.013 39.130 0.00 0.00 30.33 2.57
577 608 6.854778 AGTAACTAACTCAAGCAGCTACTAC 58.145 40.000 0.00 0.00 30.33 2.73
578 609 4.358494 ACTAACTCAAGCAGCTACTACG 57.642 45.455 0.00 0.00 0.00 3.51
580 611 3.936372 AACTCAAGCAGCTACTACGAA 57.064 42.857 0.00 0.00 0.00 3.85
581 612 3.219052 ACTCAAGCAGCTACTACGAAC 57.781 47.619 0.00 0.00 0.00 3.95
583 614 4.008330 ACTCAAGCAGCTACTACGAACTA 58.992 43.478 0.00 0.00 0.00 2.24
585 616 4.008330 TCAAGCAGCTACTACGAACTACT 58.992 43.478 0.00 0.00 0.00 2.57
586 617 5.181009 TCAAGCAGCTACTACGAACTACTA 58.819 41.667 0.00 0.00 0.00 1.82
587 618 5.821470 TCAAGCAGCTACTACGAACTACTAT 59.179 40.000 0.00 0.00 0.00 2.12
588 619 6.318144 TCAAGCAGCTACTACGAACTACTATT 59.682 38.462 0.00 0.00 0.00 1.73
592 623 7.041916 AGCAGCTACTACGAACTACTATTAGTG 60.042 40.741 6.60 0.04 38.65 2.74
593 624 7.254727 GCAGCTACTACGAACTACTATTAGTGT 60.255 40.741 6.60 0.62 38.65 3.55
594 625 9.254133 CAGCTACTACGAACTACTATTAGTGTA 57.746 37.037 6.60 0.00 38.65 2.90
595 626 9.823647 AGCTACTACGAACTACTATTAGTGTAA 57.176 33.333 6.60 0.00 38.65 2.41
675 794 3.193614 CTGCTACGCTGCTGCCTG 61.194 66.667 10.24 0.00 35.36 4.85
677 796 2.184322 GCTACGCTGCTGCCTGTA 59.816 61.111 10.24 6.58 35.36 2.74
678 797 2.167861 GCTACGCTGCTGCCTGTAC 61.168 63.158 10.24 0.00 35.36 2.90
679 798 1.513158 CTACGCTGCTGCCTGTACT 59.487 57.895 10.24 0.00 35.36 2.73
680 799 0.803768 CTACGCTGCTGCCTGTACTG 60.804 60.000 10.24 0.00 35.36 2.74
681 800 1.532604 TACGCTGCTGCCTGTACTGT 61.533 55.000 10.24 2.85 35.36 3.55
682 801 1.215382 CGCTGCTGCCTGTACTGTA 59.785 57.895 10.24 0.00 35.36 2.74
683 802 0.179100 CGCTGCTGCCTGTACTGTAT 60.179 55.000 10.24 0.00 35.36 2.29
739 957 8.767478 TTCGTTCGTCTTAAATTCTTAATCCT 57.233 30.769 0.00 0.00 0.00 3.24
814 1674 7.412063 ACGTAATTTCATTTATAGAAACCCGC 58.588 34.615 0.00 0.00 37.76 6.13
968 1835 5.017490 CCGTCCATCCTATTCTACCTACAT 58.983 45.833 0.00 0.00 0.00 2.29
1015 1884 1.407979 GATCCTGCCCAGCAAATCAAG 59.592 52.381 6.70 0.00 38.41 3.02
1023 1892 2.066262 CCAGCAAATCAAGCAAGCAAG 58.934 47.619 0.00 0.00 0.00 4.01
1040 1909 0.865769 AAGAGTGCAAAACCTACGCG 59.134 50.000 3.53 3.53 0.00 6.01
1063 1932 1.337071 TCCGATCGATCCAGCAGTAAC 59.663 52.381 18.66 0.00 0.00 2.50
1064 1933 1.603172 CCGATCGATCCAGCAGTAACC 60.603 57.143 18.66 0.00 0.00 2.85
1068 1937 2.695359 TCGATCCAGCAGTAACCAAAC 58.305 47.619 0.00 0.00 0.00 2.93
1069 1938 2.301870 TCGATCCAGCAGTAACCAAACT 59.698 45.455 0.00 0.00 0.00 2.66
1126 1995 2.887568 GACGTGATCCAGCGCCTG 60.888 66.667 2.29 1.18 0.00 4.85
1606 2486 1.226888 CGGCTGCGAGGGTAGTAAC 60.227 63.158 0.00 0.00 0.00 2.50
1885 2768 2.167861 GGCGCACGAGATGAAGGAC 61.168 63.158 10.83 0.00 0.00 3.85
2031 2914 1.671742 GCGTCTTCCACCCTGAGAA 59.328 57.895 0.00 0.00 0.00 2.87
2077 4840 8.778358 GCTCCTATTTATCTTTAGTCCAACATG 58.222 37.037 0.00 0.00 0.00 3.21
2117 4896 3.093057 AGAGTGTAATCTCCAGCTCGTT 58.907 45.455 0.00 0.00 35.28 3.85
2128 4907 0.504384 CAGCTCGTTGTGTCTTCGTG 59.496 55.000 0.00 0.00 0.00 4.35
2131 4910 1.071436 GCTCGTTGTGTCTTCGTGTTC 60.071 52.381 0.00 0.00 0.00 3.18
2165 4947 5.000591 TCAGTTTTCGAATGTATTGCAGGA 58.999 37.500 0.00 0.00 0.00 3.86
2252 5042 2.162208 GTCTCGACCATTACGTACACCA 59.838 50.000 0.00 0.00 0.00 4.17
2253 5043 3.018856 TCTCGACCATTACGTACACCAT 58.981 45.455 0.00 0.00 0.00 3.55
2258 5048 3.645884 ACCATTACGTACACCATATCGC 58.354 45.455 0.00 0.00 0.00 4.58
2259 5049 2.659757 CCATTACGTACACCATATCGCG 59.340 50.000 0.00 0.00 0.00 5.87
2266 5056 3.420035 CGTACACCATATCGCGATTTTCG 60.420 47.826 28.81 14.44 43.89 3.46
2275 5065 0.096976 CGCGATTTTCGTCCTTGCAT 59.903 50.000 0.00 0.00 42.81 3.96
2279 5069 3.059438 GCGATTTTCGTCCTTGCATTTTC 59.941 43.478 0.00 0.00 42.81 2.29
2290 5080 2.219080 TGCATTTTCTCCATGCCTGA 57.781 45.000 2.56 0.00 45.59 3.86
2291 5081 2.527497 TGCATTTTCTCCATGCCTGAA 58.473 42.857 2.56 0.00 45.59 3.02
2292 5082 2.231964 TGCATTTTCTCCATGCCTGAAC 59.768 45.455 2.56 0.00 45.59 3.18
2293 5083 2.494870 GCATTTTCTCCATGCCTGAACT 59.505 45.455 0.00 0.00 41.13 3.01
2294 5084 3.675228 GCATTTTCTCCATGCCTGAACTG 60.675 47.826 0.00 0.00 41.13 3.16
2295 5085 2.205022 TTTCTCCATGCCTGAACTGG 57.795 50.000 0.00 0.00 0.00 4.00
2296 5086 1.067295 TTCTCCATGCCTGAACTGGT 58.933 50.000 0.00 0.00 0.00 4.00
2297 5087 1.067295 TCTCCATGCCTGAACTGGTT 58.933 50.000 0.00 0.00 0.00 3.67
2298 5088 1.003580 TCTCCATGCCTGAACTGGTTC 59.996 52.381 6.53 6.53 39.91 3.62
2299 5089 0.321564 TCCATGCCTGAACTGGTTCG 60.322 55.000 8.63 4.34 42.28 3.95
2300 5090 1.503542 CATGCCTGAACTGGTTCGC 59.496 57.895 8.63 7.46 42.28 4.70
2301 5091 1.073025 ATGCCTGAACTGGTTCGCA 59.927 52.632 14.69 14.69 42.28 5.10
2302 5092 0.322816 ATGCCTGAACTGGTTCGCAT 60.323 50.000 16.96 16.96 42.28 4.73
2303 5093 0.955428 TGCCTGAACTGGTTCGCATC 60.955 55.000 10.40 1.87 42.28 3.91
2304 5094 1.648467 GCCTGAACTGGTTCGCATCC 61.648 60.000 8.63 0.00 42.28 3.51
2305 5095 1.026718 CCTGAACTGGTTCGCATCCC 61.027 60.000 8.63 0.00 42.28 3.85
2306 5096 0.036010 CTGAACTGGTTCGCATCCCT 60.036 55.000 8.63 0.00 42.28 4.20
2307 5097 0.321564 TGAACTGGTTCGCATCCCTG 60.322 55.000 8.63 0.00 42.28 4.45
2308 5098 0.036388 GAACTGGTTCGCATCCCTGA 60.036 55.000 0.00 0.00 0.00 3.86
2309 5099 0.400213 AACTGGTTCGCATCCCTGAA 59.600 50.000 0.00 0.00 0.00 3.02
2310 5100 0.620556 ACTGGTTCGCATCCCTGAAT 59.379 50.000 0.00 0.00 0.00 2.57
2311 5101 1.303309 CTGGTTCGCATCCCTGAATC 58.697 55.000 0.00 0.00 0.00 2.52
2312 5102 0.617935 TGGTTCGCATCCCTGAATCA 59.382 50.000 0.00 0.00 33.03 2.57
2313 5103 1.303309 GGTTCGCATCCCTGAATCAG 58.697 55.000 2.68 2.68 0.00 2.90
2314 5104 1.134401 GGTTCGCATCCCTGAATCAGA 60.134 52.381 12.53 0.00 32.44 3.27
2315 5105 1.936547 GTTCGCATCCCTGAATCAGAC 59.063 52.381 12.53 0.00 32.44 3.51
2316 5106 1.489481 TCGCATCCCTGAATCAGACT 58.511 50.000 12.53 0.00 32.44 3.24
2317 5107 1.410517 TCGCATCCCTGAATCAGACTC 59.589 52.381 12.53 0.00 32.44 3.36
2318 5108 1.863267 GCATCCCTGAATCAGACTCG 58.137 55.000 12.53 0.00 32.44 4.18
2319 5109 1.137872 GCATCCCTGAATCAGACTCGT 59.862 52.381 12.53 0.00 32.44 4.18
2320 5110 2.801342 GCATCCCTGAATCAGACTCGTC 60.801 54.545 12.53 0.00 32.44 4.20
2321 5111 1.475403 TCCCTGAATCAGACTCGTCC 58.525 55.000 12.53 0.00 32.44 4.79
2322 5112 0.461961 CCCTGAATCAGACTCGTCCC 59.538 60.000 12.53 0.00 32.44 4.46
2323 5113 1.186200 CCTGAATCAGACTCGTCCCA 58.814 55.000 12.53 0.00 32.44 4.37
2324 5114 1.134965 CCTGAATCAGACTCGTCCCAC 60.135 57.143 12.53 0.00 32.44 4.61
2325 5115 0.526211 TGAATCAGACTCGTCCCACG 59.474 55.000 0.00 0.00 44.19 4.94
2326 5116 0.802607 GAATCAGACTCGTCCCACGC 60.803 60.000 0.00 0.00 42.21 5.34
2327 5117 1.532604 AATCAGACTCGTCCCACGCA 61.533 55.000 0.00 0.00 42.21 5.24
2328 5118 2.214181 ATCAGACTCGTCCCACGCAC 62.214 60.000 0.00 0.00 42.21 5.34
2329 5119 3.681835 AGACTCGTCCCACGCACC 61.682 66.667 0.00 0.00 42.21 5.01
2330 5120 4.736896 GACTCGTCCCACGCACCC 62.737 72.222 0.00 0.00 42.21 4.61
2338 5128 4.690719 CCACGCACCCGCCTACAA 62.691 66.667 0.00 0.00 38.22 2.41
2339 5129 3.419759 CACGCACCCGCCTACAAC 61.420 66.667 0.00 0.00 38.22 3.32
2340 5130 3.622826 ACGCACCCGCCTACAACT 61.623 61.111 0.00 0.00 38.22 3.16
2341 5131 3.118454 CGCACCCGCCTACAACTG 61.118 66.667 0.00 0.00 33.11 3.16
2342 5132 2.032071 GCACCCGCCTACAACTGT 59.968 61.111 0.00 0.00 0.00 3.55
2343 5133 1.294138 GCACCCGCCTACAACTGTA 59.706 57.895 0.00 0.00 0.00 2.74
2344 5134 0.107848 GCACCCGCCTACAACTGTAT 60.108 55.000 0.00 0.00 0.00 2.29
2833 5623 2.353607 GAGATGCGTACGCCCGAG 60.354 66.667 35.11 0.00 41.09 4.63
2834 5624 3.825833 GAGATGCGTACGCCCGAGG 62.826 68.421 35.11 0.00 41.09 4.63
2835 5625 4.944372 GATGCGTACGCCCGAGGG 62.944 72.222 35.11 3.22 41.09 4.30
2845 5635 2.507944 CCCGAGGGCCATGAGAAG 59.492 66.667 6.18 0.00 0.00 2.85
2846 5636 2.066393 CCCGAGGGCCATGAGAAGA 61.066 63.158 6.18 0.00 0.00 2.87
2847 5637 1.626356 CCCGAGGGCCATGAGAAGAA 61.626 60.000 6.18 0.00 0.00 2.52
2848 5638 0.253044 CCGAGGGCCATGAGAAGAAA 59.747 55.000 6.18 0.00 0.00 2.52
2849 5639 1.340017 CCGAGGGCCATGAGAAGAAAA 60.340 52.381 6.18 0.00 0.00 2.29
2850 5640 1.740025 CGAGGGCCATGAGAAGAAAAC 59.260 52.381 6.18 0.00 0.00 2.43
2851 5641 2.095461 GAGGGCCATGAGAAGAAAACC 58.905 52.381 6.18 0.00 0.00 3.27
2852 5642 1.428912 AGGGCCATGAGAAGAAAACCA 59.571 47.619 6.18 0.00 0.00 3.67
2853 5643 2.043526 AGGGCCATGAGAAGAAAACCAT 59.956 45.455 6.18 0.00 0.00 3.55
2854 5644 2.167075 GGGCCATGAGAAGAAAACCATG 59.833 50.000 4.39 0.00 36.92 3.66
2855 5645 2.827921 GGCCATGAGAAGAAAACCATGT 59.172 45.455 0.00 0.00 35.79 3.21
2856 5646 3.119352 GGCCATGAGAAGAAAACCATGTC 60.119 47.826 0.00 0.00 35.79 3.06
2857 5647 3.119352 GCCATGAGAAGAAAACCATGTCC 60.119 47.826 0.00 0.00 35.79 4.02
2858 5648 3.127548 CCATGAGAAGAAAACCATGTCCG 59.872 47.826 0.00 0.00 35.79 4.79
2859 5649 3.762407 TGAGAAGAAAACCATGTCCGA 57.238 42.857 0.00 0.00 0.00 4.55
2860 5650 3.399330 TGAGAAGAAAACCATGTCCGAC 58.601 45.455 0.00 0.00 0.00 4.79
2861 5651 3.071023 TGAGAAGAAAACCATGTCCGACT 59.929 43.478 0.00 0.00 0.00 4.18
2862 5652 4.282449 TGAGAAGAAAACCATGTCCGACTA 59.718 41.667 0.00 0.00 0.00 2.59
2863 5653 5.221561 TGAGAAGAAAACCATGTCCGACTAA 60.222 40.000 0.00 0.00 0.00 2.24
2864 5654 5.238583 AGAAGAAAACCATGTCCGACTAAG 58.761 41.667 0.00 0.00 0.00 2.18
2865 5655 3.335579 AGAAAACCATGTCCGACTAAGC 58.664 45.455 0.00 0.00 0.00 3.09
2866 5656 3.008049 AGAAAACCATGTCCGACTAAGCT 59.992 43.478 0.00 0.00 0.00 3.74
2867 5657 2.386661 AACCATGTCCGACTAAGCTG 57.613 50.000 0.00 0.00 0.00 4.24
2868 5658 1.267121 ACCATGTCCGACTAAGCTGT 58.733 50.000 0.00 0.00 0.00 4.40
2869 5659 1.623811 ACCATGTCCGACTAAGCTGTT 59.376 47.619 0.00 0.00 0.00 3.16
2870 5660 2.829720 ACCATGTCCGACTAAGCTGTTA 59.170 45.455 0.00 0.00 0.00 2.41
2871 5661 3.119101 ACCATGTCCGACTAAGCTGTTAG 60.119 47.826 0.00 0.00 41.45 2.34
2872 5662 3.130516 CCATGTCCGACTAAGCTGTTAGA 59.869 47.826 0.00 0.00 38.39 2.10
2873 5663 3.844577 TGTCCGACTAAGCTGTTAGAC 57.155 47.619 0.00 1.15 38.39 2.59
2874 5664 2.490903 TGTCCGACTAAGCTGTTAGACC 59.509 50.000 0.00 0.00 38.39 3.85
2875 5665 2.490903 GTCCGACTAAGCTGTTAGACCA 59.509 50.000 0.00 0.00 38.39 4.02
2876 5666 2.753452 TCCGACTAAGCTGTTAGACCAG 59.247 50.000 0.00 0.00 38.39 4.00
2877 5667 2.492484 CCGACTAAGCTGTTAGACCAGT 59.508 50.000 0.00 0.00 38.39 4.00
2878 5668 3.056749 CCGACTAAGCTGTTAGACCAGTT 60.057 47.826 0.00 0.00 38.39 3.16
2879 5669 4.557205 CGACTAAGCTGTTAGACCAGTTT 58.443 43.478 0.00 0.00 38.39 2.66
2880 5670 4.386049 CGACTAAGCTGTTAGACCAGTTTG 59.614 45.833 0.00 0.00 38.39 2.93
2881 5671 5.291905 ACTAAGCTGTTAGACCAGTTTGT 57.708 39.130 0.00 0.00 38.39 2.83
2882 5672 5.057149 ACTAAGCTGTTAGACCAGTTTGTG 58.943 41.667 0.00 0.00 38.39 3.33
2883 5673 2.222027 AGCTGTTAGACCAGTTTGTGC 58.778 47.619 0.00 0.00 34.84 4.57
2884 5674 1.069906 GCTGTTAGACCAGTTTGTGCG 60.070 52.381 0.00 0.00 34.84 5.34
2885 5675 2.479837 CTGTTAGACCAGTTTGTGCGA 58.520 47.619 0.00 0.00 0.00 5.10
2886 5676 3.067106 CTGTTAGACCAGTTTGTGCGAT 58.933 45.455 0.00 0.00 0.00 4.58
2887 5677 3.064207 TGTTAGACCAGTTTGTGCGATC 58.936 45.455 0.00 0.00 0.00 3.69
2888 5678 1.990799 TAGACCAGTTTGTGCGATCG 58.009 50.000 11.69 11.69 0.00 3.69
2889 5679 0.317160 AGACCAGTTTGTGCGATCGA 59.683 50.000 21.57 0.59 0.00 3.59
2890 5680 0.438830 GACCAGTTTGTGCGATCGAC 59.561 55.000 21.57 14.40 0.00 4.20
2891 5681 0.033504 ACCAGTTTGTGCGATCGACT 59.966 50.000 21.57 10.11 0.00 4.18
2892 5682 0.439985 CCAGTTTGTGCGATCGACTG 59.560 55.000 21.57 21.17 37.92 3.51
2893 5683 0.439985 CAGTTTGTGCGATCGACTGG 59.560 55.000 21.57 4.42 35.32 4.00
2894 5684 0.033504 AGTTTGTGCGATCGACTGGT 59.966 50.000 21.57 0.00 0.00 4.00
2895 5685 1.271379 AGTTTGTGCGATCGACTGGTA 59.729 47.619 21.57 0.00 0.00 3.25
2896 5686 2.094182 AGTTTGTGCGATCGACTGGTAT 60.094 45.455 21.57 0.00 0.00 2.73
2897 5687 1.921243 TTGTGCGATCGACTGGTATG 58.079 50.000 21.57 0.00 0.00 2.39
2898 5688 0.102300 TGTGCGATCGACTGGTATGG 59.898 55.000 21.57 0.00 0.00 2.74
2899 5689 0.597637 GTGCGATCGACTGGTATGGG 60.598 60.000 21.57 0.00 0.00 4.00
2900 5690 1.006102 GCGATCGACTGGTATGGGG 60.006 63.158 21.57 0.00 0.00 4.96
2901 5691 1.006102 CGATCGACTGGTATGGGGC 60.006 63.158 10.26 0.00 0.00 5.80
2902 5692 1.744320 CGATCGACTGGTATGGGGCA 61.744 60.000 10.26 0.00 0.00 5.36
2903 5693 0.249911 GATCGACTGGTATGGGGCAC 60.250 60.000 0.00 0.00 0.00 5.01
2904 5694 0.980754 ATCGACTGGTATGGGGCACA 60.981 55.000 0.00 0.00 0.00 4.57
2905 5695 1.449601 CGACTGGTATGGGGCACAC 60.450 63.158 0.00 0.00 0.00 3.82
2906 5696 1.449601 GACTGGTATGGGGCACACG 60.450 63.158 0.00 0.00 0.00 4.49
2907 5697 2.124736 CTGGTATGGGGCACACGG 60.125 66.667 0.00 0.00 0.00 4.94
2908 5698 4.418328 TGGTATGGGGCACACGGC 62.418 66.667 0.00 0.00 43.74 5.68
2956 5746 9.699703 TTCTTAAAATTTAAGGGGTCAAAATCG 57.300 29.630 21.21 0.00 0.00 3.34
2957 5747 9.080097 TCTTAAAATTTAAGGGGTCAAAATCGA 57.920 29.630 21.21 0.00 0.00 3.59
2958 5748 9.699703 CTTAAAATTTAAGGGGTCAAAATCGAA 57.300 29.630 15.68 0.00 0.00 3.71
2960 5750 8.966069 AAAATTTAAGGGGTCAAAATCGAAAA 57.034 26.923 0.00 0.00 0.00 2.29
2961 5751 9.567776 AAAATTTAAGGGGTCAAAATCGAAAAT 57.432 25.926 0.00 0.00 0.00 1.82
2962 5752 8.546597 AATTTAAGGGGTCAAAATCGAAAATG 57.453 30.769 0.00 0.00 0.00 2.32
2963 5753 3.592898 AGGGGTCAAAATCGAAAATGC 57.407 42.857 0.00 0.00 0.00 3.56
2964 5754 3.165071 AGGGGTCAAAATCGAAAATGCT 58.835 40.909 0.00 0.00 0.00 3.79
2965 5755 3.193479 AGGGGTCAAAATCGAAAATGCTC 59.807 43.478 0.00 0.00 0.00 4.26
2966 5756 3.511699 GGGTCAAAATCGAAAATGCTCC 58.488 45.455 0.00 0.00 0.00 4.70
2967 5757 3.056891 GGGTCAAAATCGAAAATGCTCCA 60.057 43.478 0.00 0.00 0.00 3.86
2968 5758 3.920412 GGTCAAAATCGAAAATGCTCCAC 59.080 43.478 0.00 0.00 0.00 4.02
2969 5759 4.321230 GGTCAAAATCGAAAATGCTCCACT 60.321 41.667 0.00 0.00 0.00 4.00
2970 5760 5.222631 GTCAAAATCGAAAATGCTCCACTT 58.777 37.500 0.00 0.00 0.00 3.16
2971 5761 6.378582 GTCAAAATCGAAAATGCTCCACTTA 58.621 36.000 0.00 0.00 0.00 2.24
2972 5762 6.305638 GTCAAAATCGAAAATGCTCCACTTAC 59.694 38.462 0.00 0.00 0.00 2.34
2973 5763 4.965119 AATCGAAAATGCTCCACTTACC 57.035 40.909 0.00 0.00 0.00 2.85
2974 5764 2.343101 TCGAAAATGCTCCACTTACCG 58.657 47.619 0.00 0.00 0.00 4.02
2975 5765 2.028839 TCGAAAATGCTCCACTTACCGA 60.029 45.455 0.00 0.00 0.00 4.69
2976 5766 2.093783 CGAAAATGCTCCACTTACCGAC 59.906 50.000 0.00 0.00 0.00 4.79
2977 5767 3.335579 GAAAATGCTCCACTTACCGACT 58.664 45.455 0.00 0.00 0.00 4.18
2978 5768 2.674796 AATGCTCCACTTACCGACTC 57.325 50.000 0.00 0.00 0.00 3.36
2979 5769 1.853963 ATGCTCCACTTACCGACTCT 58.146 50.000 0.00 0.00 0.00 3.24
2980 5770 2.502142 TGCTCCACTTACCGACTCTA 57.498 50.000 0.00 0.00 0.00 2.43
2981 5771 3.014304 TGCTCCACTTACCGACTCTAT 57.986 47.619 0.00 0.00 0.00 1.98
2982 5772 2.950309 TGCTCCACTTACCGACTCTATC 59.050 50.000 0.00 0.00 0.00 2.08
2983 5773 3.215975 GCTCCACTTACCGACTCTATCT 58.784 50.000 0.00 0.00 0.00 1.98
2984 5774 4.141551 TGCTCCACTTACCGACTCTATCTA 60.142 45.833 0.00 0.00 0.00 1.98
2985 5775 4.213906 GCTCCACTTACCGACTCTATCTAC 59.786 50.000 0.00 0.00 0.00 2.59
2986 5776 4.375272 TCCACTTACCGACTCTATCTACG 58.625 47.826 0.00 0.00 0.00 3.51
2987 5777 3.059051 CCACTTACCGACTCTATCTACGC 60.059 52.174 0.00 0.00 0.00 4.42
2988 5778 3.808726 CACTTACCGACTCTATCTACGCT 59.191 47.826 0.00 0.00 0.00 5.07
2989 5779 4.987285 CACTTACCGACTCTATCTACGCTA 59.013 45.833 0.00 0.00 0.00 4.26
2990 5780 5.464722 CACTTACCGACTCTATCTACGCTAA 59.535 44.000 0.00 0.00 0.00 3.09
2991 5781 5.695816 ACTTACCGACTCTATCTACGCTAAG 59.304 44.000 0.00 0.00 33.24 2.18
2992 5782 4.333913 ACCGACTCTATCTACGCTAAGA 57.666 45.455 0.00 0.00 0.00 2.10
2993 5783 4.309099 ACCGACTCTATCTACGCTAAGAG 58.691 47.826 0.00 0.00 41.03 2.85
2997 5787 5.556006 ACTCTATCTACGCTAAGAGTCCT 57.444 43.478 0.00 0.00 44.03 3.85
2998 5788 6.669125 ACTCTATCTACGCTAAGAGTCCTA 57.331 41.667 0.00 0.00 44.03 2.94
2999 5789 6.458210 ACTCTATCTACGCTAAGAGTCCTAC 58.542 44.000 0.00 0.00 44.03 3.18
3000 5790 5.468592 TCTATCTACGCTAAGAGTCCTACG 58.531 45.833 0.00 0.00 0.00 3.51
3001 5791 3.533606 TCTACGCTAAGAGTCCTACGT 57.466 47.619 0.00 0.00 37.53 3.57
3002 5792 4.655762 TCTACGCTAAGAGTCCTACGTA 57.344 45.455 0.00 0.00 35.15 3.57
3003 5793 4.363999 TCTACGCTAAGAGTCCTACGTAC 58.636 47.826 0.00 0.00 35.15 3.67
3004 5794 1.929836 ACGCTAAGAGTCCTACGTACG 59.070 52.381 15.01 15.01 31.03 3.67
3005 5795 1.260033 CGCTAAGAGTCCTACGTACGG 59.740 57.143 21.06 2.00 0.00 4.02
3006 5796 2.555199 GCTAAGAGTCCTACGTACGGA 58.445 52.381 21.06 10.81 0.00 4.69
3012 5802 2.754648 TCCTACGTACGGACAGACG 58.245 57.895 21.06 0.00 44.57 4.18
3019 5809 2.279918 ACGGACAGACGTGTTGCC 60.280 61.111 0.00 0.00 46.64 4.52
3020 5810 2.029073 CGGACAGACGTGTTGCCT 59.971 61.111 0.00 0.00 36.88 4.75
3021 5811 2.022129 CGGACAGACGTGTTGCCTC 61.022 63.158 0.00 0.00 36.88 4.70
3022 5812 1.668151 GGACAGACGTGTTGCCTCC 60.668 63.158 0.00 0.00 36.88 4.30
3023 5813 1.367840 GACAGACGTGTTGCCTCCT 59.632 57.895 0.00 0.00 36.88 3.69
3024 5814 0.601558 GACAGACGTGTTGCCTCCTA 59.398 55.000 0.00 0.00 36.88 2.94
3025 5815 1.000506 GACAGACGTGTTGCCTCCTAA 59.999 52.381 0.00 0.00 36.88 2.69
3026 5816 1.623811 ACAGACGTGTTGCCTCCTAAT 59.376 47.619 0.00 0.00 30.30 1.73
3027 5817 2.038557 ACAGACGTGTTGCCTCCTAATT 59.961 45.455 0.00 0.00 30.30 1.40
3028 5818 2.673368 CAGACGTGTTGCCTCCTAATTC 59.327 50.000 0.00 0.00 0.00 2.17
3029 5819 2.301870 AGACGTGTTGCCTCCTAATTCA 59.698 45.455 0.00 0.00 0.00 2.57
3030 5820 3.055094 AGACGTGTTGCCTCCTAATTCAT 60.055 43.478 0.00 0.00 0.00 2.57
3031 5821 3.270877 ACGTGTTGCCTCCTAATTCATC 58.729 45.455 0.00 0.00 0.00 2.92
3032 5822 2.614057 CGTGTTGCCTCCTAATTCATCC 59.386 50.000 0.00 0.00 0.00 3.51
3033 5823 2.952310 GTGTTGCCTCCTAATTCATCCC 59.048 50.000 0.00 0.00 0.00 3.85
3034 5824 2.852449 TGTTGCCTCCTAATTCATCCCT 59.148 45.455 0.00 0.00 0.00 4.20
3035 5825 3.117888 TGTTGCCTCCTAATTCATCCCTC 60.118 47.826 0.00 0.00 0.00 4.30
3036 5826 2.057922 TGCCTCCTAATTCATCCCTCC 58.942 52.381 0.00 0.00 0.00 4.30
3037 5827 1.352687 GCCTCCTAATTCATCCCTCCC 59.647 57.143 0.00 0.00 0.00 4.30
3038 5828 2.997138 CCTCCTAATTCATCCCTCCCT 58.003 52.381 0.00 0.00 0.00 4.20
3039 5829 2.909662 CCTCCTAATTCATCCCTCCCTC 59.090 54.545 0.00 0.00 0.00 4.30
3040 5830 2.909662 CTCCTAATTCATCCCTCCCTCC 59.090 54.545 0.00 0.00 0.00 4.30
3041 5831 1.988846 CCTAATTCATCCCTCCCTCCC 59.011 57.143 0.00 0.00 0.00 4.30
3042 5832 2.429985 CCTAATTCATCCCTCCCTCCCT 60.430 54.545 0.00 0.00 0.00 4.20
3043 5833 1.527457 AATTCATCCCTCCCTCCCTG 58.473 55.000 0.00 0.00 0.00 4.45
3044 5834 0.649992 ATTCATCCCTCCCTCCCTGA 59.350 55.000 0.00 0.00 0.00 3.86
3045 5835 0.649992 TTCATCCCTCCCTCCCTGAT 59.350 55.000 0.00 0.00 0.00 2.90
3046 5836 0.649992 TCATCCCTCCCTCCCTGATT 59.350 55.000 0.00 0.00 0.00 2.57
3047 5837 1.011293 TCATCCCTCCCTCCCTGATTT 59.989 52.381 0.00 0.00 0.00 2.17
3048 5838 1.144503 CATCCCTCCCTCCCTGATTTG 59.855 57.143 0.00 0.00 0.00 2.32
3049 5839 1.228510 CCCTCCCTCCCTGATTTGC 59.771 63.158 0.00 0.00 0.00 3.68
3050 5840 1.574526 CCCTCCCTCCCTGATTTGCA 61.575 60.000 0.00 0.00 0.00 4.08
3051 5841 0.106819 CCTCCCTCCCTGATTTGCAG 60.107 60.000 0.00 0.00 44.49 4.41
3068 5858 3.232279 AGGTAGTCCTGGCCATCTC 57.768 57.895 5.51 0.00 43.33 2.75
3069 5859 0.339859 AGGTAGTCCTGGCCATCTCA 59.660 55.000 5.51 0.00 43.33 3.27
3070 5860 0.755686 GGTAGTCCTGGCCATCTCAG 59.244 60.000 5.51 0.00 0.00 3.35
3071 5861 1.689575 GGTAGTCCTGGCCATCTCAGA 60.690 57.143 5.51 0.00 34.36 3.27
3072 5862 1.410882 GTAGTCCTGGCCATCTCAGAC 59.589 57.143 5.51 8.85 34.36 3.51
3073 5863 0.980231 AGTCCTGGCCATCTCAGACC 60.980 60.000 5.51 0.00 34.36 3.85
3074 5864 1.690633 TCCTGGCCATCTCAGACCC 60.691 63.158 5.51 0.00 34.36 4.46
3075 5865 2.503061 CTGGCCATCTCAGACCCG 59.497 66.667 5.51 0.00 34.36 5.28
3076 5866 3.083349 TGGCCATCTCAGACCCGG 61.083 66.667 0.00 0.00 0.00 5.73
3077 5867 4.554036 GGCCATCTCAGACCCGGC 62.554 72.222 0.00 3.37 42.21 6.13
3078 5868 4.554036 GCCATCTCAGACCCGGCC 62.554 72.222 0.00 0.00 36.73 6.13
3079 5869 3.866582 CCATCTCAGACCCGGCCC 61.867 72.222 0.00 0.00 0.00 5.80
3080 5870 2.765807 CATCTCAGACCCGGCCCT 60.766 66.667 0.00 0.00 0.00 5.19
3081 5871 2.765807 ATCTCAGACCCGGCCCTG 60.766 66.667 13.29 13.29 0.00 4.45
3082 5872 3.625632 ATCTCAGACCCGGCCCTGT 62.626 63.158 17.30 0.00 0.00 4.00
3083 5873 3.775654 CTCAGACCCGGCCCTGTC 61.776 72.222 17.30 10.61 0.00 3.51
3111 5901 2.520982 GGCCCGGCCCTAAAATCC 60.521 66.667 18.83 0.00 44.06 3.01
3112 5902 2.277404 GCCCGGCCCTAAAATCCA 59.723 61.111 0.00 0.00 0.00 3.41
3113 5903 1.828224 GCCCGGCCCTAAAATCCAG 60.828 63.158 0.00 0.00 0.00 3.86
3114 5904 1.152756 CCCGGCCCTAAAATCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
3120 5910 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
3121 5911 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
3122 5912 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
3160 5950 4.351054 CCGGGCTTGGGCTTGAGT 62.351 66.667 0.00 0.00 38.73 3.41
3161 5951 2.282462 CGGGCTTGGGCTTGAGTT 60.282 61.111 0.00 0.00 38.73 3.01
3162 5952 1.903404 CGGGCTTGGGCTTGAGTTT 60.903 57.895 0.00 0.00 38.73 2.66
3163 5953 1.463553 CGGGCTTGGGCTTGAGTTTT 61.464 55.000 0.00 0.00 38.73 2.43
3164 5954 0.033920 GGGCTTGGGCTTGAGTTTTG 59.966 55.000 0.00 0.00 38.73 2.44
3165 5955 1.039856 GGCTTGGGCTTGAGTTTTGA 58.960 50.000 0.00 0.00 38.73 2.69
3166 5956 1.000171 GGCTTGGGCTTGAGTTTTGAG 60.000 52.381 0.00 0.00 38.73 3.02
3167 5957 1.603931 GCTTGGGCTTGAGTTTTGAGC 60.604 52.381 0.00 0.00 35.71 4.26
3168 5958 0.667993 TTGGGCTTGAGTTTTGAGCG 59.332 50.000 0.00 0.00 37.29 5.03
3169 5959 1.081175 GGGCTTGAGTTTTGAGCGC 60.081 57.895 0.00 0.00 41.15 5.92
3170 5960 1.654220 GGCTTGAGTTTTGAGCGCA 59.346 52.632 11.47 0.00 37.29 6.09
3171 5961 0.661483 GGCTTGAGTTTTGAGCGCAC 60.661 55.000 11.47 3.13 37.29 5.34
3172 5962 0.661483 GCTTGAGTTTTGAGCGCACC 60.661 55.000 11.47 0.50 0.00 5.01
3173 5963 0.662619 CTTGAGTTTTGAGCGCACCA 59.337 50.000 11.47 3.86 0.00 4.17
3174 5964 0.662619 TTGAGTTTTGAGCGCACCAG 59.337 50.000 11.47 0.00 0.00 4.00
3175 5965 0.463654 TGAGTTTTGAGCGCACCAGT 60.464 50.000 11.47 0.00 0.00 4.00
3176 5966 0.663153 GAGTTTTGAGCGCACCAGTT 59.337 50.000 11.47 0.00 0.00 3.16
3177 5967 0.381801 AGTTTTGAGCGCACCAGTTG 59.618 50.000 11.47 0.00 0.00 3.16
3178 5968 0.594796 GTTTTGAGCGCACCAGTTGG 60.595 55.000 11.47 0.00 42.17 3.77
3179 5969 1.733402 TTTTGAGCGCACCAGTTGGG 61.733 55.000 11.47 0.00 44.81 4.12
3189 5979 4.722700 CAGTTGGGCCTGGACGGG 62.723 72.222 4.53 0.00 0.00 5.28
3197 5987 3.966543 CCTGGACGGGCTTGGGTT 61.967 66.667 0.00 0.00 0.00 4.11
3198 5988 2.115266 CTGGACGGGCTTGGGTTT 59.885 61.111 0.00 0.00 0.00 3.27
3199 5989 2.203422 TGGACGGGCTTGGGTTTG 60.203 61.111 0.00 0.00 0.00 2.93
3200 5990 2.989253 GGACGGGCTTGGGTTTGG 60.989 66.667 0.00 0.00 0.00 3.28
3201 5991 3.680786 GACGGGCTTGGGTTTGGC 61.681 66.667 0.00 0.00 0.00 4.52
3202 5992 4.531426 ACGGGCTTGGGTTTGGCA 62.531 61.111 0.00 0.00 0.00 4.92
3203 5993 2.996734 CGGGCTTGGGTTTGGCAT 60.997 61.111 0.00 0.00 0.00 4.40
3204 5994 1.680651 CGGGCTTGGGTTTGGCATA 60.681 57.895 0.00 0.00 0.00 3.14
3205 5995 1.042559 CGGGCTTGGGTTTGGCATAT 61.043 55.000 0.00 0.00 0.00 1.78
3206 5996 1.203237 GGGCTTGGGTTTGGCATATT 58.797 50.000 0.00 0.00 0.00 1.28
3207 5997 1.134431 GGGCTTGGGTTTGGCATATTG 60.134 52.381 0.00 0.00 0.00 1.90
3208 5998 1.134431 GGCTTGGGTTTGGCATATTGG 60.134 52.381 0.00 0.00 0.00 3.16
3209 5999 1.743431 GCTTGGGTTTGGCATATTGGC 60.743 52.381 0.00 0.00 44.03 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.147322 GATGCACGAACGGCACCG 62.147 66.667 7.71 7.71 45.23 4.94
63 64 4.147322 CCGATGCACGAACGGCAC 62.147 66.667 9.75 6.44 45.23 5.01
141 142 2.873245 GCTCAAGCTCAATCAGTGACCA 60.873 50.000 0.00 0.00 38.21 4.02
166 191 2.543012 CAGATGACAGATGATCAACGGC 59.457 50.000 0.00 0.00 0.00 5.68
170 195 3.520721 ACCACCAGATGACAGATGATCAA 59.479 43.478 0.00 0.00 0.00 2.57
172 197 3.834489 ACCACCAGATGACAGATGATC 57.166 47.619 0.00 0.00 0.00 2.92
370 397 1.787012 GTTTTTGGCTCGTCGTAGGA 58.213 50.000 0.00 0.00 0.00 2.94
401 428 6.927936 AGTGCTACAGCTAATATGATTGTGAG 59.072 38.462 2.44 0.00 42.66 3.51
467 498 0.186630 CCCTGCATCCATTCCATCCA 59.813 55.000 0.00 0.00 0.00 3.41
468 499 0.186873 ACCCTGCATCCATTCCATCC 59.813 55.000 0.00 0.00 0.00 3.51
469 500 1.325355 CACCCTGCATCCATTCCATC 58.675 55.000 0.00 0.00 0.00 3.51
470 501 0.632835 ACACCCTGCATCCATTCCAT 59.367 50.000 0.00 0.00 0.00 3.41
471 502 0.409092 AACACCCTGCATCCATTCCA 59.591 50.000 0.00 0.00 0.00 3.53
472 503 1.106285 GAACACCCTGCATCCATTCC 58.894 55.000 0.00 0.00 0.00 3.01
473 504 1.106285 GGAACACCCTGCATCCATTC 58.894 55.000 0.00 0.00 29.85 2.67
474 505 0.324645 GGGAACACCCTGCATCCATT 60.325 55.000 4.26 0.00 40.49 3.16
550 581 3.748568 AGCTGCTTGAGTTAGTTACTTGC 59.251 43.478 0.00 0.00 37.17 4.01
557 588 4.008330 TCGTAGTAGCTGCTTGAGTTAGT 58.992 43.478 10.41 0.00 0.00 2.24
561 592 2.820787 AGTTCGTAGTAGCTGCTTGAGT 59.179 45.455 10.41 0.00 0.00 3.41
564 595 4.358494 AGTAGTTCGTAGTAGCTGCTTG 57.642 45.455 10.41 3.39 0.00 4.01
565 596 6.696441 AATAGTAGTTCGTAGTAGCTGCTT 57.304 37.500 10.41 0.00 0.00 3.91
566 597 6.991531 ACTAATAGTAGTTCGTAGTAGCTGCT 59.008 38.462 9.94 9.94 37.25 4.24
567 598 7.070798 CACTAATAGTAGTTCGTAGTAGCTGC 58.929 42.308 0.00 0.00 38.58 5.25
568 599 8.140677 ACACTAATAGTAGTTCGTAGTAGCTG 57.859 38.462 0.00 0.00 38.58 4.24
569 600 9.823647 TTACACTAATAGTAGTTCGTAGTAGCT 57.176 33.333 0.00 0.00 38.58 3.32
595 626 4.997395 TCTGCTGAGAATAAGAGCGTTTTT 59.003 37.500 0.00 0.00 0.00 1.94
596 627 4.569943 TCTGCTGAGAATAAGAGCGTTTT 58.430 39.130 0.00 0.00 0.00 2.43
597 628 4.180057 CTCTGCTGAGAATAAGAGCGTTT 58.820 43.478 15.04 0.00 42.73 3.60
598 629 3.430098 CCTCTGCTGAGAATAAGAGCGTT 60.430 47.826 21.10 0.00 42.73 4.84
599 630 2.100584 CCTCTGCTGAGAATAAGAGCGT 59.899 50.000 21.10 0.00 42.73 5.07
600 631 2.100584 ACCTCTGCTGAGAATAAGAGCG 59.899 50.000 21.10 4.46 42.73 5.03
603 709 3.621558 TCGACCTCTGCTGAGAATAAGA 58.378 45.455 21.10 10.18 42.73 2.10
669 788 4.875536 TGTGCAATAATACAGTACAGGCAG 59.124 41.667 0.00 0.00 0.00 4.85
670 789 4.837972 TGTGCAATAATACAGTACAGGCA 58.162 39.130 0.00 0.00 0.00 4.75
671 790 7.490962 TTATGTGCAATAATACAGTACAGGC 57.509 36.000 0.00 0.00 31.67 4.85
672 791 8.061857 CGTTTATGTGCAATAATACAGTACAGG 58.938 37.037 0.00 0.00 31.67 4.00
673 792 8.813282 TCGTTTATGTGCAATAATACAGTACAG 58.187 33.333 0.00 0.00 31.67 2.74
674 793 8.705048 TCGTTTATGTGCAATAATACAGTACA 57.295 30.769 0.00 0.00 32.65 2.90
675 794 9.976255 TTTCGTTTATGTGCAATAATACAGTAC 57.024 29.630 0.00 0.00 0.00 2.73
677 796 9.502145 CATTTCGTTTATGTGCAATAATACAGT 57.498 29.630 0.00 0.00 0.00 3.55
678 797 8.471457 GCATTTCGTTTATGTGCAATAATACAG 58.529 33.333 0.00 0.00 35.93 2.74
679 798 7.970614 TGCATTTCGTTTATGTGCAATAATACA 59.029 29.630 0.00 0.00 42.22 2.29
680 799 8.334016 TGCATTTCGTTTATGTGCAATAATAC 57.666 30.769 0.00 0.00 42.22 1.89
681 800 8.187480 ACTGCATTTCGTTTATGTGCAATAATA 58.813 29.630 0.00 0.00 44.20 0.98
682 801 7.035004 ACTGCATTTCGTTTATGTGCAATAAT 58.965 30.769 0.00 0.00 44.20 1.28
683 802 6.385843 ACTGCATTTCGTTTATGTGCAATAA 58.614 32.000 0.00 0.00 44.20 1.40
798 1658 2.567985 ACGGGCGGGTTTCTATAAATG 58.432 47.619 0.00 0.00 0.00 2.32
814 1674 8.953313 ACTATCTCACCTTTAATTTTTAACGGG 58.047 33.333 7.26 3.37 0.00 5.28
907 1774 0.249073 CGGAAGCGGACTCGATTGAT 60.249 55.000 0.00 0.00 45.48 2.57
968 1835 0.096454 CGATCGATCGCCAGCGTATA 59.904 55.000 32.34 0.00 43.84 1.47
991 1860 0.836606 TTTGCTGGGCAGGATCGATA 59.163 50.000 0.00 0.00 40.61 2.92
995 1864 1.407979 CTTGATTTGCTGGGCAGGATC 59.592 52.381 9.44 9.44 40.61 3.36
1023 1892 1.076332 ATCGCGTAGGTTTTGCACTC 58.924 50.000 5.77 0.00 0.00 3.51
1030 1899 1.849097 GATCGGAATCGCGTAGGTTT 58.151 50.000 5.77 0.00 36.13 3.27
1040 1909 1.000283 ACTGCTGGATCGATCGGAATC 60.000 52.381 18.81 11.59 0.00 2.52
1063 1932 1.324736 GATCGCGTTCTAGCAGTTTGG 59.675 52.381 5.77 0.00 36.85 3.28
1064 1933 1.007011 CGATCGCGTTCTAGCAGTTTG 60.007 52.381 14.72 0.00 36.85 2.93
1068 1937 1.048494 CATCGATCGCGTTCTAGCAG 58.952 55.000 11.09 0.00 38.98 4.24
1069 1938 0.317854 CCATCGATCGCGTTCTAGCA 60.318 55.000 11.09 0.00 38.98 3.49
1070 1939 1.609840 GCCATCGATCGCGTTCTAGC 61.610 60.000 11.09 8.31 38.98 3.42
1093 1962 1.080705 GTCGTCCAGGTCCAAGTCG 60.081 63.158 0.00 0.00 0.00 4.18
1259 2131 1.361668 ATGTCGCCGCAGATGTTGAC 61.362 55.000 0.00 0.00 0.00 3.18
1606 2486 6.709846 ACAGGATCTTCTTCTTCTTGTTCTTG 59.290 38.462 0.00 0.00 0.00 3.02
1885 2768 4.807039 CCTTGGTCGTACCCGCCG 62.807 72.222 2.23 0.00 37.50 6.46
1924 2807 1.961277 GGGTGCAGAGAACACGGTG 60.961 63.158 6.58 6.58 38.98 4.94
2031 2914 0.757188 CGGAGGAGGAGTGGCAGTAT 60.757 60.000 0.00 0.00 0.00 2.12
2077 4840 8.709386 ACACTCTGAAACTGACATGAATATAC 57.291 34.615 0.00 0.00 0.00 1.47
2089 4853 4.629200 GCTGGAGATTACACTCTGAAACTG 59.371 45.833 0.00 0.00 37.13 3.16
2099 4863 2.668457 CACAACGAGCTGGAGATTACAC 59.332 50.000 1.44 0.00 0.00 2.90
2117 4896 2.425668 TCACTCTGAACACGAAGACACA 59.574 45.455 0.00 0.00 0.00 3.72
2128 4907 6.715464 TCGAAAACTGAAATTCACTCTGAAC 58.285 36.000 0.00 0.00 39.45 3.18
2131 4910 7.134815 ACATTCGAAAACTGAAATTCACTCTG 58.865 34.615 0.00 0.00 0.00 3.35
2207 4997 5.523916 CCACGGATCACTCTCGAAAATTTAT 59.476 40.000 0.00 0.00 0.00 1.40
2244 5034 3.420035 CGAAAATCGCGATATGGTGTACG 60.420 47.826 24.00 14.70 31.14 3.67
2252 5042 2.221055 GCAAGGACGAAAATCGCGATAT 59.779 45.455 24.00 14.71 45.12 1.63
2253 5043 1.591158 GCAAGGACGAAAATCGCGATA 59.409 47.619 24.00 0.00 45.12 2.92
2258 5048 4.475944 AGAAAATGCAAGGACGAAAATCG 58.524 39.130 0.00 0.00 46.93 3.34
2259 5049 4.859245 GGAGAAAATGCAAGGACGAAAATC 59.141 41.667 0.00 0.00 0.00 2.17
2275 5065 2.158475 ACCAGTTCAGGCATGGAGAAAA 60.158 45.455 0.00 0.00 37.54 2.29
2279 5069 1.457346 GAACCAGTTCAGGCATGGAG 58.543 55.000 5.66 0.00 39.31 3.86
2290 5080 0.400213 TTCAGGGATGCGAACCAGTT 59.600 50.000 0.00 0.00 0.00 3.16
2291 5081 0.620556 ATTCAGGGATGCGAACCAGT 59.379 50.000 0.00 0.00 0.00 4.00
2292 5082 1.303309 GATTCAGGGATGCGAACCAG 58.697 55.000 0.00 0.00 0.00 4.00
2293 5083 0.617935 TGATTCAGGGATGCGAACCA 59.382 50.000 0.00 0.00 0.00 3.67
2294 5084 1.134401 TCTGATTCAGGGATGCGAACC 60.134 52.381 13.59 0.00 31.51 3.62
2295 5085 1.936547 GTCTGATTCAGGGATGCGAAC 59.063 52.381 13.59 0.00 31.51 3.95
2296 5086 1.833630 AGTCTGATTCAGGGATGCGAA 59.166 47.619 13.59 0.00 31.51 4.70
2297 5087 1.410517 GAGTCTGATTCAGGGATGCGA 59.589 52.381 13.59 0.00 31.51 5.10
2298 5088 1.863267 GAGTCTGATTCAGGGATGCG 58.137 55.000 13.59 0.00 31.51 4.73
2299 5089 1.137872 ACGAGTCTGATTCAGGGATGC 59.862 52.381 13.59 0.60 31.51 3.91
2300 5090 2.223923 GGACGAGTCTGATTCAGGGATG 60.224 54.545 13.59 4.91 31.51 3.51
2301 5091 2.035632 GGACGAGTCTGATTCAGGGAT 58.964 52.381 13.59 0.32 31.51 3.85
2302 5092 1.475403 GGACGAGTCTGATTCAGGGA 58.525 55.000 13.59 0.00 31.51 4.20
2303 5093 0.461961 GGGACGAGTCTGATTCAGGG 59.538 60.000 13.59 4.09 31.51 4.45
2304 5094 1.134965 GTGGGACGAGTCTGATTCAGG 60.135 57.143 13.59 0.34 31.51 3.86
2305 5095 1.468224 CGTGGGACGAGTCTGATTCAG 60.468 57.143 7.38 7.38 46.05 3.02
2306 5096 0.526211 CGTGGGACGAGTCTGATTCA 59.474 55.000 3.09 0.00 46.05 2.57
2307 5097 0.802607 GCGTGGGACGAGTCTGATTC 60.803 60.000 0.00 0.00 46.05 2.52
2308 5098 1.215647 GCGTGGGACGAGTCTGATT 59.784 57.895 0.00 0.00 46.05 2.57
2309 5099 1.977009 TGCGTGGGACGAGTCTGAT 60.977 57.895 0.00 0.00 46.05 2.90
2310 5100 2.596338 TGCGTGGGACGAGTCTGA 60.596 61.111 0.00 0.00 46.05 3.27
2311 5101 2.430921 GTGCGTGGGACGAGTCTG 60.431 66.667 0.00 0.00 46.05 3.51
2312 5102 3.681835 GGTGCGTGGGACGAGTCT 61.682 66.667 0.00 0.00 46.05 3.24
2313 5103 4.736896 GGGTGCGTGGGACGAGTC 62.737 72.222 0.00 0.00 46.05 3.36
2321 5111 4.690719 TTGTAGGCGGGTGCGTGG 62.691 66.667 0.00 0.00 44.10 4.94
2322 5112 3.419759 GTTGTAGGCGGGTGCGTG 61.420 66.667 0.00 0.00 44.10 5.34
2323 5113 3.622826 AGTTGTAGGCGGGTGCGT 61.623 61.111 0.00 0.00 44.10 5.24
2324 5114 2.495366 TACAGTTGTAGGCGGGTGCG 62.495 60.000 0.00 0.00 44.10 5.34
2325 5115 0.107848 ATACAGTTGTAGGCGGGTGC 60.108 55.000 0.00 0.00 34.53 5.01
2816 5606 2.353607 CTCGGGCGTACGCATCTC 60.354 66.667 37.99 22.21 44.11 2.75
2817 5607 3.900892 CCTCGGGCGTACGCATCT 61.901 66.667 37.99 0.00 44.11 2.90
2818 5608 4.944372 CCCTCGGGCGTACGCATC 62.944 72.222 37.99 27.64 44.11 3.91
2828 5618 1.626356 TTCTTCTCATGGCCCTCGGG 61.626 60.000 0.00 0.00 38.57 5.14
2829 5619 0.253044 TTTCTTCTCATGGCCCTCGG 59.747 55.000 0.00 0.00 0.00 4.63
2830 5620 1.740025 GTTTTCTTCTCATGGCCCTCG 59.260 52.381 0.00 0.00 0.00 4.63
2831 5621 2.095461 GGTTTTCTTCTCATGGCCCTC 58.905 52.381 0.00 0.00 0.00 4.30
2832 5622 1.428912 TGGTTTTCTTCTCATGGCCCT 59.571 47.619 0.00 0.00 0.00 5.19
2833 5623 1.923356 TGGTTTTCTTCTCATGGCCC 58.077 50.000 0.00 0.00 0.00 5.80
2834 5624 2.827921 ACATGGTTTTCTTCTCATGGCC 59.172 45.455 0.00 0.00 40.69 5.36
2835 5625 3.119352 GGACATGGTTTTCTTCTCATGGC 60.119 47.826 0.00 0.00 43.00 4.40
2836 5626 3.127548 CGGACATGGTTTTCTTCTCATGG 59.872 47.826 0.00 0.00 40.69 3.66
2837 5627 4.002982 TCGGACATGGTTTTCTTCTCATG 58.997 43.478 0.00 0.00 41.74 3.07
2838 5628 4.003648 GTCGGACATGGTTTTCTTCTCAT 58.996 43.478 2.62 0.00 0.00 2.90
2839 5629 3.071023 AGTCGGACATGGTTTTCTTCTCA 59.929 43.478 11.27 0.00 0.00 3.27
2840 5630 3.665190 AGTCGGACATGGTTTTCTTCTC 58.335 45.455 11.27 0.00 0.00 2.87
2841 5631 3.771577 AGTCGGACATGGTTTTCTTCT 57.228 42.857 11.27 0.00 0.00 2.85
2842 5632 4.142881 GCTTAGTCGGACATGGTTTTCTTC 60.143 45.833 11.27 0.00 0.00 2.87
2843 5633 3.751698 GCTTAGTCGGACATGGTTTTCTT 59.248 43.478 11.27 0.00 0.00 2.52
2844 5634 3.008049 AGCTTAGTCGGACATGGTTTTCT 59.992 43.478 11.27 0.00 0.00 2.52
2845 5635 3.125316 CAGCTTAGTCGGACATGGTTTTC 59.875 47.826 11.27 0.00 0.00 2.29
2846 5636 3.074412 CAGCTTAGTCGGACATGGTTTT 58.926 45.455 11.27 0.00 0.00 2.43
2847 5637 2.038557 ACAGCTTAGTCGGACATGGTTT 59.961 45.455 11.27 0.00 0.00 3.27
2848 5638 1.623811 ACAGCTTAGTCGGACATGGTT 59.376 47.619 11.27 0.00 0.00 3.67
2849 5639 1.267121 ACAGCTTAGTCGGACATGGT 58.733 50.000 11.27 2.69 0.00 3.55
2850 5640 2.386661 AACAGCTTAGTCGGACATGG 57.613 50.000 11.27 0.74 0.00 3.66
2851 5641 4.106197 GTCTAACAGCTTAGTCGGACATG 58.894 47.826 11.27 0.00 32.45 3.21
2852 5642 3.130693 GGTCTAACAGCTTAGTCGGACAT 59.869 47.826 11.27 0.00 32.45 3.06
2853 5643 2.490903 GGTCTAACAGCTTAGTCGGACA 59.509 50.000 11.27 0.00 32.45 4.02
2854 5644 2.490903 TGGTCTAACAGCTTAGTCGGAC 59.509 50.000 0.00 0.00 32.45 4.79
2855 5645 2.753452 CTGGTCTAACAGCTTAGTCGGA 59.247 50.000 0.00 0.00 32.45 4.55
2856 5646 2.492484 ACTGGTCTAACAGCTTAGTCGG 59.508 50.000 0.00 0.00 42.21 4.79
2857 5647 3.851976 ACTGGTCTAACAGCTTAGTCG 57.148 47.619 0.00 0.00 42.21 4.18
2858 5648 5.177696 CACAAACTGGTCTAACAGCTTAGTC 59.822 44.000 0.00 0.00 42.21 2.59
2859 5649 5.057149 CACAAACTGGTCTAACAGCTTAGT 58.943 41.667 0.00 0.00 42.21 2.24
2860 5650 4.083802 GCACAAACTGGTCTAACAGCTTAG 60.084 45.833 0.00 0.00 42.21 2.18
2861 5651 3.813166 GCACAAACTGGTCTAACAGCTTA 59.187 43.478 0.00 0.00 42.21 3.09
2862 5652 2.618709 GCACAAACTGGTCTAACAGCTT 59.381 45.455 0.00 0.00 42.21 3.74
2863 5653 2.222027 GCACAAACTGGTCTAACAGCT 58.778 47.619 0.00 0.00 42.21 4.24
2864 5654 1.069906 CGCACAAACTGGTCTAACAGC 60.070 52.381 0.00 0.00 42.21 4.40
2865 5655 2.479837 TCGCACAAACTGGTCTAACAG 58.520 47.619 0.00 0.00 44.03 3.16
2866 5656 2.605837 TCGCACAAACTGGTCTAACA 57.394 45.000 0.00 0.00 0.00 2.41
2867 5657 2.092211 CGATCGCACAAACTGGTCTAAC 59.908 50.000 0.26 0.00 0.00 2.34
2868 5658 2.029739 TCGATCGCACAAACTGGTCTAA 60.030 45.455 11.09 0.00 0.00 2.10
2869 5659 1.542472 TCGATCGCACAAACTGGTCTA 59.458 47.619 11.09 0.00 0.00 2.59
2870 5660 0.317160 TCGATCGCACAAACTGGTCT 59.683 50.000 11.09 0.00 0.00 3.85
2871 5661 0.438830 GTCGATCGCACAAACTGGTC 59.561 55.000 11.09 0.00 0.00 4.02
2872 5662 0.033504 AGTCGATCGCACAAACTGGT 59.966 50.000 11.09 0.00 0.00 4.00
2873 5663 0.439985 CAGTCGATCGCACAAACTGG 59.560 55.000 20.40 7.22 34.96 4.00
2874 5664 0.439985 CCAGTCGATCGCACAAACTG 59.560 55.000 20.94 20.94 37.64 3.16
2875 5665 0.033504 ACCAGTCGATCGCACAAACT 59.966 50.000 11.09 5.33 0.00 2.66
2876 5666 1.705256 TACCAGTCGATCGCACAAAC 58.295 50.000 11.09 2.66 0.00 2.93
2877 5667 2.267426 CATACCAGTCGATCGCACAAA 58.733 47.619 11.09 0.00 0.00 2.83
2878 5668 1.470805 CCATACCAGTCGATCGCACAA 60.471 52.381 11.09 0.00 0.00 3.33
2879 5669 0.102300 CCATACCAGTCGATCGCACA 59.898 55.000 11.09 0.00 0.00 4.57
2880 5670 0.597637 CCCATACCAGTCGATCGCAC 60.598 60.000 11.09 9.77 0.00 5.34
2881 5671 1.739667 CCCATACCAGTCGATCGCA 59.260 57.895 11.09 0.00 0.00 5.10
2882 5672 1.006102 CCCCATACCAGTCGATCGC 60.006 63.158 11.09 5.80 0.00 4.58
2883 5673 1.006102 GCCCCATACCAGTCGATCG 60.006 63.158 9.36 9.36 0.00 3.69
2884 5674 0.249911 GTGCCCCATACCAGTCGATC 60.250 60.000 0.00 0.00 0.00 3.69
2885 5675 0.980754 TGTGCCCCATACCAGTCGAT 60.981 55.000 0.00 0.00 0.00 3.59
2886 5676 1.610967 TGTGCCCCATACCAGTCGA 60.611 57.895 0.00 0.00 0.00 4.20
2887 5677 1.449601 GTGTGCCCCATACCAGTCG 60.450 63.158 0.00 0.00 0.00 4.18
2888 5678 1.449601 CGTGTGCCCCATACCAGTC 60.450 63.158 0.00 0.00 0.00 3.51
2889 5679 2.668632 CGTGTGCCCCATACCAGT 59.331 61.111 0.00 0.00 0.00 4.00
2890 5680 2.124736 CCGTGTGCCCCATACCAG 60.125 66.667 0.00 0.00 0.00 4.00
2891 5681 4.418328 GCCGTGTGCCCCATACCA 62.418 66.667 0.00 0.00 0.00 3.25
2930 5720 9.699703 CGATTTTGACCCCTTAAATTTTAAGAA 57.300 29.630 24.13 12.49 0.00 2.52
2931 5721 9.080097 TCGATTTTGACCCCTTAAATTTTAAGA 57.920 29.630 24.13 6.77 0.00 2.10
2932 5722 9.699703 TTCGATTTTGACCCCTTAAATTTTAAG 57.300 29.630 18.13 18.13 0.00 1.85
2935 5725 8.966069 TTTTCGATTTTGACCCCTTAAATTTT 57.034 26.923 0.00 0.00 0.00 1.82
2936 5726 8.998377 CATTTTCGATTTTGACCCCTTAAATTT 58.002 29.630 0.00 0.00 0.00 1.82
2937 5727 7.119116 GCATTTTCGATTTTGACCCCTTAAATT 59.881 33.333 0.00 0.00 0.00 1.82
2938 5728 6.593770 GCATTTTCGATTTTGACCCCTTAAAT 59.406 34.615 0.00 0.00 0.00 1.40
2939 5729 5.929415 GCATTTTCGATTTTGACCCCTTAAA 59.071 36.000 0.00 0.00 0.00 1.52
2940 5730 5.245075 AGCATTTTCGATTTTGACCCCTTAA 59.755 36.000 0.00 0.00 0.00 1.85
2941 5731 4.770010 AGCATTTTCGATTTTGACCCCTTA 59.230 37.500 0.00 0.00 0.00 2.69
2942 5732 3.578282 AGCATTTTCGATTTTGACCCCTT 59.422 39.130 0.00 0.00 0.00 3.95
2943 5733 3.165071 AGCATTTTCGATTTTGACCCCT 58.835 40.909 0.00 0.00 0.00 4.79
2944 5734 3.511699 GAGCATTTTCGATTTTGACCCC 58.488 45.455 0.00 0.00 0.00 4.95
2945 5735 3.056891 TGGAGCATTTTCGATTTTGACCC 60.057 43.478 0.00 0.00 0.00 4.46
2946 5736 3.920412 GTGGAGCATTTTCGATTTTGACC 59.080 43.478 0.00 0.00 0.00 4.02
2947 5737 4.798574 AGTGGAGCATTTTCGATTTTGAC 58.201 39.130 0.00 0.00 0.00 3.18
2948 5738 5.452078 AAGTGGAGCATTTTCGATTTTGA 57.548 34.783 0.00 0.00 0.00 2.69
2949 5739 5.572896 GGTAAGTGGAGCATTTTCGATTTTG 59.427 40.000 0.00 0.00 0.00 2.44
2950 5740 5.619086 CGGTAAGTGGAGCATTTTCGATTTT 60.619 40.000 0.00 0.00 0.00 1.82
2951 5741 4.142687 CGGTAAGTGGAGCATTTTCGATTT 60.143 41.667 0.00 0.00 0.00 2.17
2952 5742 3.374058 CGGTAAGTGGAGCATTTTCGATT 59.626 43.478 0.00 0.00 0.00 3.34
2953 5743 2.936498 CGGTAAGTGGAGCATTTTCGAT 59.064 45.455 0.00 0.00 0.00 3.59
2954 5744 2.028839 TCGGTAAGTGGAGCATTTTCGA 60.029 45.455 0.00 0.00 0.00 3.71
2955 5745 2.093783 GTCGGTAAGTGGAGCATTTTCG 59.906 50.000 0.00 0.00 0.00 3.46
2956 5746 3.335579 AGTCGGTAAGTGGAGCATTTTC 58.664 45.455 0.00 0.00 0.00 2.29
2957 5747 3.008049 AGAGTCGGTAAGTGGAGCATTTT 59.992 43.478 0.00 0.00 0.00 1.82
2958 5748 2.567615 AGAGTCGGTAAGTGGAGCATTT 59.432 45.455 0.00 0.00 0.00 2.32
2959 5749 2.180276 AGAGTCGGTAAGTGGAGCATT 58.820 47.619 0.00 0.00 0.00 3.56
2960 5750 1.853963 AGAGTCGGTAAGTGGAGCAT 58.146 50.000 0.00 0.00 0.00 3.79
2961 5751 2.502142 TAGAGTCGGTAAGTGGAGCA 57.498 50.000 0.00 0.00 0.00 4.26
2962 5752 3.215975 AGATAGAGTCGGTAAGTGGAGC 58.784 50.000 0.00 0.00 0.00 4.70
2963 5753 4.448395 CGTAGATAGAGTCGGTAAGTGGAG 59.552 50.000 0.00 0.00 0.00 3.86
2964 5754 4.375272 CGTAGATAGAGTCGGTAAGTGGA 58.625 47.826 0.00 0.00 0.00 4.02
2965 5755 3.059051 GCGTAGATAGAGTCGGTAAGTGG 60.059 52.174 0.00 0.00 0.00 4.00
2966 5756 3.808726 AGCGTAGATAGAGTCGGTAAGTG 59.191 47.826 0.00 0.00 32.48 3.16
2967 5757 4.070630 AGCGTAGATAGAGTCGGTAAGT 57.929 45.455 0.00 0.00 32.48 2.24
2969 5759 5.847304 TCTTAGCGTAGATAGAGTCGGTAA 58.153 41.667 0.00 0.00 41.50 2.85
2970 5760 5.010516 ACTCTTAGCGTAGATAGAGTCGGTA 59.989 44.000 0.00 0.00 33.92 4.02
2971 5761 4.202243 ACTCTTAGCGTAGATAGAGTCGGT 60.202 45.833 0.00 0.00 33.92 4.69
2972 5762 4.309099 ACTCTTAGCGTAGATAGAGTCGG 58.691 47.826 0.00 0.00 33.92 4.79
2973 5763 4.386652 GGACTCTTAGCGTAGATAGAGTCG 59.613 50.000 19.16 0.00 45.37 4.18
2974 5764 5.544650 AGGACTCTTAGCGTAGATAGAGTC 58.455 45.833 18.18 18.18 44.60 3.36
2975 5765 5.556006 AGGACTCTTAGCGTAGATAGAGT 57.444 43.478 0.00 0.00 38.70 3.24
2976 5766 5.574055 CGTAGGACTCTTAGCGTAGATAGAG 59.426 48.000 0.00 0.00 32.73 2.43
2977 5767 5.010516 ACGTAGGACTCTTAGCGTAGATAGA 59.989 44.000 0.00 0.00 0.00 1.98
2978 5768 5.229423 ACGTAGGACTCTTAGCGTAGATAG 58.771 45.833 0.00 0.00 0.00 2.08
2979 5769 5.207110 ACGTAGGACTCTTAGCGTAGATA 57.793 43.478 0.00 0.00 0.00 1.98
2980 5770 4.070630 ACGTAGGACTCTTAGCGTAGAT 57.929 45.455 0.00 0.00 0.00 1.98
2981 5771 3.533606 ACGTAGGACTCTTAGCGTAGA 57.466 47.619 0.00 0.00 0.00 2.59
2982 5772 3.181377 CGTACGTAGGACTCTTAGCGTAG 59.819 52.174 9.66 0.00 35.87 3.51
2983 5773 3.116300 CGTACGTAGGACTCTTAGCGTA 58.884 50.000 9.66 0.00 34.38 4.42
2984 5774 1.929836 CGTACGTAGGACTCTTAGCGT 59.070 52.381 9.66 0.00 36.52 5.07
2985 5775 1.260033 CCGTACGTAGGACTCTTAGCG 59.740 57.143 16.52 2.62 0.00 4.26
2986 5776 2.555199 TCCGTACGTAGGACTCTTAGC 58.445 52.381 16.52 0.00 31.86 3.09
2994 5784 2.754648 CGTCTGTCCGTACGTAGGA 58.245 57.895 16.52 12.36 34.48 2.94
2999 5789 1.602877 GCAACACGTCTGTCCGTACG 61.603 60.000 8.69 8.69 44.47 3.67
3000 5790 1.280206 GGCAACACGTCTGTCCGTAC 61.280 60.000 0.00 0.00 39.45 3.67
3001 5791 1.007038 GGCAACACGTCTGTCCGTA 60.007 57.895 0.00 0.00 39.45 4.02
3002 5792 2.279918 GGCAACACGTCTGTCCGT 60.280 61.111 0.00 0.00 42.87 4.69
3003 5793 2.022129 GAGGCAACACGTCTGTCCG 61.022 63.158 0.00 0.00 41.41 4.79
3004 5794 1.668151 GGAGGCAACACGTCTGTCC 60.668 63.158 0.00 0.00 41.41 4.02
3005 5795 0.601558 TAGGAGGCAACACGTCTGTC 59.398 55.000 0.00 0.00 41.41 3.51
3006 5796 1.045407 TTAGGAGGCAACACGTCTGT 58.955 50.000 0.00 0.00 41.41 3.41
3007 5797 2.386661 ATTAGGAGGCAACACGTCTG 57.613 50.000 0.00 0.00 41.41 3.51
3008 5798 2.301870 TGAATTAGGAGGCAACACGTCT 59.698 45.455 0.00 0.00 41.41 4.18
3009 5799 2.695359 TGAATTAGGAGGCAACACGTC 58.305 47.619 0.00 0.00 41.41 4.34
3010 5800 2.851263 TGAATTAGGAGGCAACACGT 57.149 45.000 0.00 0.00 41.41 4.49
3011 5801 2.614057 GGATGAATTAGGAGGCAACACG 59.386 50.000 0.00 0.00 41.41 4.49
3012 5802 2.952310 GGGATGAATTAGGAGGCAACAC 59.048 50.000 0.00 0.00 41.41 3.32
3013 5803 2.852449 AGGGATGAATTAGGAGGCAACA 59.148 45.455 0.00 0.00 41.41 3.33
3014 5804 3.481453 GAGGGATGAATTAGGAGGCAAC 58.519 50.000 0.00 0.00 0.00 4.17
3015 5805 2.443255 GGAGGGATGAATTAGGAGGCAA 59.557 50.000 0.00 0.00 0.00 4.52
3016 5806 2.057922 GGAGGGATGAATTAGGAGGCA 58.942 52.381 0.00 0.00 0.00 4.75
3017 5807 1.352687 GGGAGGGATGAATTAGGAGGC 59.647 57.143 0.00 0.00 0.00 4.70
3018 5808 2.909662 GAGGGAGGGATGAATTAGGAGG 59.090 54.545 0.00 0.00 0.00 4.30
3019 5809 2.909662 GGAGGGAGGGATGAATTAGGAG 59.090 54.545 0.00 0.00 0.00 3.69
3020 5810 2.429383 GGGAGGGAGGGATGAATTAGGA 60.429 54.545 0.00 0.00 0.00 2.94
3021 5811 1.988846 GGGAGGGAGGGATGAATTAGG 59.011 57.143 0.00 0.00 0.00 2.69
3022 5812 2.641815 CAGGGAGGGAGGGATGAATTAG 59.358 54.545 0.00 0.00 0.00 1.73
3023 5813 2.252676 TCAGGGAGGGAGGGATGAATTA 59.747 50.000 0.00 0.00 0.00 1.40
3024 5814 1.011293 TCAGGGAGGGAGGGATGAATT 59.989 52.381 0.00 0.00 0.00 2.17
3025 5815 0.649992 TCAGGGAGGGAGGGATGAAT 59.350 55.000 0.00 0.00 0.00 2.57
3026 5816 0.649992 ATCAGGGAGGGAGGGATGAA 59.350 55.000 0.00 0.00 0.00 2.57
3027 5817 0.649992 AATCAGGGAGGGAGGGATGA 59.350 55.000 0.00 0.00 0.00 2.92
3028 5818 1.144503 CAAATCAGGGAGGGAGGGATG 59.855 57.143 0.00 0.00 0.00 3.51
3029 5819 1.527457 CAAATCAGGGAGGGAGGGAT 58.473 55.000 0.00 0.00 0.00 3.85
3030 5820 1.281925 GCAAATCAGGGAGGGAGGGA 61.282 60.000 0.00 0.00 0.00 4.20
3031 5821 1.228510 GCAAATCAGGGAGGGAGGG 59.771 63.158 0.00 0.00 0.00 4.30
3032 5822 0.106819 CTGCAAATCAGGGAGGGAGG 60.107 60.000 0.00 0.00 39.15 4.30
3033 5823 3.491208 CTGCAAATCAGGGAGGGAG 57.509 57.895 0.00 0.00 39.15 4.30
3051 5841 0.755686 CTGAGATGGCCAGGACTACC 59.244 60.000 13.05 0.70 0.00 3.18
3052 5842 1.410882 GTCTGAGATGGCCAGGACTAC 59.589 57.143 13.05 1.03 32.73 2.73
3053 5843 1.689575 GGTCTGAGATGGCCAGGACTA 60.690 57.143 13.05 0.00 32.73 2.59
3054 5844 0.980231 GGTCTGAGATGGCCAGGACT 60.980 60.000 13.05 10.74 32.73 3.85
3055 5845 1.524482 GGTCTGAGATGGCCAGGAC 59.476 63.158 13.05 13.38 32.73 3.85
3056 5846 1.690633 GGGTCTGAGATGGCCAGGA 60.691 63.158 13.05 1.13 32.73 3.86
3057 5847 2.914289 GGGTCTGAGATGGCCAGG 59.086 66.667 13.05 0.00 32.73 4.45
3058 5848 2.503061 CGGGTCTGAGATGGCCAG 59.497 66.667 13.05 0.00 0.00 4.85
3059 5849 3.083349 CCGGGTCTGAGATGGCCA 61.083 66.667 8.56 8.56 0.00 5.36
3060 5850 4.554036 GCCGGGTCTGAGATGGCC 62.554 72.222 2.18 0.00 39.83 5.36
3061 5851 4.554036 GGCCGGGTCTGAGATGGC 62.554 72.222 2.18 12.99 44.98 4.40
3062 5852 3.866582 GGGCCGGGTCTGAGATGG 61.867 72.222 2.18 0.00 0.00 3.51
3063 5853 2.765807 AGGGCCGGGTCTGAGATG 60.766 66.667 2.18 0.00 0.00 2.90
3064 5854 2.765807 CAGGGCCGGGTCTGAGAT 60.766 66.667 2.18 0.00 33.11 2.75
3065 5855 4.316823 ACAGGGCCGGGTCTGAGA 62.317 66.667 20.68 0.00 35.20 3.27
3066 5856 3.775654 GACAGGGCCGGGTCTGAG 61.776 72.222 19.90 5.49 35.20 3.35
3095 5885 1.828224 CTGGATTTTAGGGCCGGGC 60.828 63.158 22.00 22.00 0.00 6.13
3096 5886 1.152756 CCTGGATTTTAGGGCCGGG 60.153 63.158 2.18 0.00 41.55 5.73
3097 5887 4.579127 CCTGGATTTTAGGGCCGG 57.421 61.111 0.00 0.00 0.00 6.13
3102 5892 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
3103 5893 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
3143 5933 3.868200 AACTCAAGCCCAAGCCCGG 62.868 63.158 0.00 0.00 41.25 5.73
3144 5934 1.463553 AAAACTCAAGCCCAAGCCCG 61.464 55.000 0.00 0.00 41.25 6.13
3145 5935 0.033920 CAAAACTCAAGCCCAAGCCC 59.966 55.000 0.00 0.00 41.25 5.19
3146 5936 1.000171 CTCAAAACTCAAGCCCAAGCC 60.000 52.381 0.00 0.00 41.25 4.35
3147 5937 1.603931 GCTCAAAACTCAAGCCCAAGC 60.604 52.381 0.00 0.00 40.32 4.01
3148 5938 1.335324 CGCTCAAAACTCAAGCCCAAG 60.335 52.381 0.00 0.00 32.31 3.61
3149 5939 0.667993 CGCTCAAAACTCAAGCCCAA 59.332 50.000 0.00 0.00 32.31 4.12
3150 5940 1.795170 GCGCTCAAAACTCAAGCCCA 61.795 55.000 0.00 0.00 32.31 5.36
3151 5941 1.081175 GCGCTCAAAACTCAAGCCC 60.081 57.895 0.00 0.00 32.31 5.19
3152 5942 0.661483 GTGCGCTCAAAACTCAAGCC 60.661 55.000 9.73 0.00 32.31 4.35
3153 5943 0.661483 GGTGCGCTCAAAACTCAAGC 60.661 55.000 9.73 0.00 0.00 4.01
3154 5944 0.662619 TGGTGCGCTCAAAACTCAAG 59.337 50.000 9.73 0.00 0.00 3.02
3155 5945 0.662619 CTGGTGCGCTCAAAACTCAA 59.337 50.000 9.73 0.00 0.00 3.02
3156 5946 0.463654 ACTGGTGCGCTCAAAACTCA 60.464 50.000 9.73 0.00 0.00 3.41
3157 5947 0.663153 AACTGGTGCGCTCAAAACTC 59.337 50.000 9.73 0.00 0.00 3.01
3158 5948 0.381801 CAACTGGTGCGCTCAAAACT 59.618 50.000 9.73 0.00 0.00 2.66
3159 5949 0.594796 CCAACTGGTGCGCTCAAAAC 60.595 55.000 9.73 0.00 0.00 2.43
3160 5950 1.732917 CCAACTGGTGCGCTCAAAA 59.267 52.632 9.73 0.00 0.00 2.44
3161 5951 2.192861 CCCAACTGGTGCGCTCAAA 61.193 57.895 9.73 0.00 0.00 2.69
3162 5952 2.594303 CCCAACTGGTGCGCTCAA 60.594 61.111 9.73 0.00 0.00 3.02
3172 5962 4.722700 CCCGTCCAGGCCCAACTG 62.723 72.222 0.00 0.00 39.21 3.16
3180 5970 3.507377 AAACCCAAGCCCGTCCAGG 62.507 63.158 0.00 0.00 40.63 4.45
3181 5971 2.115266 AAACCCAAGCCCGTCCAG 59.885 61.111 0.00 0.00 0.00 3.86
3182 5972 2.203422 CAAACCCAAGCCCGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
3183 5973 2.989253 CCAAACCCAAGCCCGTCC 60.989 66.667 0.00 0.00 0.00 4.79
3184 5974 3.680786 GCCAAACCCAAGCCCGTC 61.681 66.667 0.00 0.00 0.00 4.79
3185 5975 2.433646 TATGCCAAACCCAAGCCCGT 62.434 55.000 0.00 0.00 0.00 5.28
3186 5976 1.042559 ATATGCCAAACCCAAGCCCG 61.043 55.000 0.00 0.00 0.00 6.13
3187 5977 1.134431 CAATATGCCAAACCCAAGCCC 60.134 52.381 0.00 0.00 0.00 5.19
3188 5978 1.134431 CCAATATGCCAAACCCAAGCC 60.134 52.381 0.00 0.00 0.00 4.35
3189 5979 1.743431 GCCAATATGCCAAACCCAAGC 60.743 52.381 0.00 0.00 0.00 4.01
3190 5980 1.554160 TGCCAATATGCCAAACCCAAG 59.446 47.619 0.00 0.00 0.00 3.61
3191 5981 1.649321 TGCCAATATGCCAAACCCAA 58.351 45.000 0.00 0.00 0.00 4.12
3192 5982 1.876849 ATGCCAATATGCCAAACCCA 58.123 45.000 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.