Multiple sequence alignment - TraesCS3B01G095700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G095700 chr3B 100.000 2374 0 0 1 2374 64300188 64297815 0.000000e+00 4385.0
1 TraesCS3B01G095700 chr3D 91.554 1634 122 13 750 2374 40738322 40736696 0.000000e+00 2239.0
2 TraesCS3B01G095700 chr3D 80.851 564 95 11 1508 2062 434932885 434933444 4.690000e-117 431.0
3 TraesCS3B01G095700 chr3D 80.035 566 99 12 1506 2062 458326780 458326220 7.900000e-110 407.0
4 TraesCS3B01G095700 chr3D 81.113 503 84 8 1566 2060 171329195 171328696 2.210000e-105 392.0
5 TraesCS3B01G095700 chr3D 91.549 142 12 0 81 222 40738990 40738849 1.860000e-46 196.0
6 TraesCS3B01G095700 chr3D 98.182 55 1 0 668 722 40738377 40738323 1.940000e-16 97.1
7 TraesCS3B01G095700 chr3A 92.857 910 59 4 682 1589 52447338 52446433 0.000000e+00 1315.0
8 TraesCS3B01G095700 chr3A 85.106 423 49 5 1677 2085 52446390 52445968 1.010000e-113 420.0
9 TraesCS3B01G095700 chr3A 79.096 177 33 3 1514 1687 714454121 714453946 4.150000e-23 119.0
10 TraesCS3B01G095700 chr7D 82.095 525 82 9 1546 2062 148114867 148115387 2.800000e-119 438.0
11 TraesCS3B01G095700 chr7D 87.500 360 30 11 309 654 151776247 151776605 3.680000e-108 401.0
12 TraesCS3B01G095700 chr7D 87.465 359 27 9 312 654 441862590 441862234 4.750000e-107 398.0
13 TraesCS3B01G095700 chr2A 88.333 360 24 11 312 656 204626454 204626098 1.310000e-112 416.0
14 TraesCS3B01G095700 chr2A 79.396 563 95 13 1505 2057 592093164 592093715 6.190000e-101 377.0
15 TraesCS3B01G095700 chr1D 88.418 354 28 7 312 654 21845229 21844878 4.720000e-112 414.0
16 TraesCS3B01G095700 chr1D 88.791 339 26 10 332 659 440925427 440925090 2.840000e-109 405.0
17 TraesCS3B01G095700 chr5D 87.430 358 28 10 312 654 442013576 442013221 1.710000e-106 396.0
18 TraesCS3B01G095700 chr5D 78.648 562 95 18 1511 2056 315193336 315193888 1.350000e-92 350.0
19 TraesCS3B01G095700 chr2D 87.535 353 31 8 312 654 458545447 458545098 1.710000e-106 396.0
20 TraesCS3B01G095700 chr1A 87.222 360 29 10 309 654 591349955 591350311 6.150000e-106 394.0
21 TraesCS3B01G095700 chr7B 87.360 356 28 10 312 654 383873478 383873127 2.210000e-105 392.0
22 TraesCS3B01G095700 chr7B 78.363 171 34 3 1510 1677 364938275 364938445 8.970000e-20 108.0
23 TraesCS3B01G095700 chr1B 81.055 512 80 15 1566 2068 668706726 668706223 2.210000e-105 392.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G095700 chr3B 64297815 64300188 2373 True 4385.000000 4385 100.000000 1 2374 1 chr3B.!!$R1 2373
1 TraesCS3B01G095700 chr3D 40736696 40738990 2294 True 844.033333 2239 93.761667 81 2374 3 chr3D.!!$R3 2293
2 TraesCS3B01G095700 chr3D 434932885 434933444 559 False 431.000000 431 80.851000 1508 2062 1 chr3D.!!$F1 554
3 TraesCS3B01G095700 chr3D 458326220 458326780 560 True 407.000000 407 80.035000 1506 2062 1 chr3D.!!$R2 556
4 TraesCS3B01G095700 chr3A 52445968 52447338 1370 True 867.500000 1315 88.981500 682 2085 2 chr3A.!!$R2 1403
5 TraesCS3B01G095700 chr7D 148114867 148115387 520 False 438.000000 438 82.095000 1546 2062 1 chr7D.!!$F1 516
6 TraesCS3B01G095700 chr2A 592093164 592093715 551 False 377.000000 377 79.396000 1505 2057 1 chr2A.!!$F1 552
7 TraesCS3B01G095700 chr5D 315193336 315193888 552 False 350.000000 350 78.648000 1511 2056 1 chr5D.!!$F1 545
8 TraesCS3B01G095700 chr1B 668706223 668706726 503 True 392.000000 392 81.055000 1566 2068 1 chr1B.!!$R1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.026803 GGCGATCGAAGTTGACATGC 59.973 55.0 21.57 0.0 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 2244 0.460284 GCCATGAAGGTCGTCGACAT 60.46 55.0 25.64 17.37 40.61 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.088823 GCATTGGAATCTATGCGGATTC 57.911 45.455 14.47 14.47 46.27 2.52
33 34 4.626042 GAATCTATGCGGATTCAGAGTGT 58.374 43.478 16.61 0.00 46.26 3.55
34 35 3.717400 TCTATGCGGATTCAGAGTGTC 57.283 47.619 0.00 0.00 0.00 3.67
35 36 3.023832 TCTATGCGGATTCAGAGTGTCA 58.976 45.455 0.00 0.00 0.00 3.58
36 37 2.306341 ATGCGGATTCAGAGTGTCAG 57.694 50.000 0.00 0.00 0.00 3.51
37 38 1.256812 TGCGGATTCAGAGTGTCAGA 58.743 50.000 0.00 0.00 0.00 3.27
38 39 1.067565 TGCGGATTCAGAGTGTCAGAC 60.068 52.381 0.00 0.00 0.00 3.51
39 40 1.203523 GCGGATTCAGAGTGTCAGACT 59.796 52.381 1.31 0.00 37.76 3.24
45 46 3.264947 GAGTGTCAGACTCGGCGA 58.735 61.111 10.14 10.14 41.91 5.54
46 47 1.803943 GAGTGTCAGACTCGGCGAT 59.196 57.895 11.27 0.00 41.91 4.58
47 48 0.248296 GAGTGTCAGACTCGGCGATC 60.248 60.000 11.27 10.54 41.91 3.69
48 49 1.583967 GTGTCAGACTCGGCGATCG 60.584 63.158 11.27 11.69 40.90 3.69
49 50 1.743995 TGTCAGACTCGGCGATCGA 60.744 57.895 21.57 9.31 46.77 3.59
56 57 4.470876 TCGGCGATCGAAGTTGAC 57.529 55.556 21.57 0.00 45.86 3.18
57 58 1.582461 TCGGCGATCGAAGTTGACA 59.418 52.632 21.57 0.00 45.86 3.58
58 59 0.172578 TCGGCGATCGAAGTTGACAT 59.827 50.000 21.57 0.00 45.86 3.06
59 60 0.298707 CGGCGATCGAAGTTGACATG 59.701 55.000 21.57 0.00 42.43 3.21
60 61 0.026803 GGCGATCGAAGTTGACATGC 59.973 55.000 21.57 0.00 0.00 4.06
61 62 0.721154 GCGATCGAAGTTGACATGCA 59.279 50.000 21.57 0.00 0.00 3.96
62 63 1.328680 GCGATCGAAGTTGACATGCAT 59.671 47.619 21.57 0.00 0.00 3.96
63 64 2.848376 GCGATCGAAGTTGACATGCATG 60.848 50.000 25.09 25.09 0.00 4.06
64 65 2.349580 CGATCGAAGTTGACATGCATGT 59.650 45.455 31.82 31.82 45.16 3.21
74 75 1.330234 ACATGCATGTCCAAGCAACA 58.670 45.000 26.61 0.00 44.88 3.33
75 76 1.000060 ACATGCATGTCCAAGCAACAC 60.000 47.619 26.61 0.00 44.88 3.32
76 77 1.271379 CATGCATGTCCAAGCAACACT 59.729 47.619 18.91 0.00 44.88 3.55
77 78 2.268762 TGCATGTCCAAGCAACACTA 57.731 45.000 0.00 0.00 37.90 2.74
78 79 2.153645 TGCATGTCCAAGCAACACTAG 58.846 47.619 0.00 0.00 37.90 2.57
79 80 2.224499 TGCATGTCCAAGCAACACTAGA 60.224 45.455 0.00 0.00 37.90 2.43
85 86 3.253188 GTCCAAGCAACACTAGAAATGCA 59.747 43.478 16.50 0.00 41.18 3.96
87 88 3.004629 CCAAGCAACACTAGAAATGCACA 59.995 43.478 16.50 0.00 41.18 4.57
142 143 0.250295 TTCACGCAGCTACTTTGGCT 60.250 50.000 0.00 0.00 41.07 4.75
185 186 3.059529 ACGTCGAGACAGATCACATATCG 60.060 47.826 0.00 0.00 0.00 2.92
192 193 7.173390 TCGAGACAGATCACATATCGAAATAGT 59.827 37.037 7.79 0.00 35.06 2.12
215 216 4.475135 GCGCCTTCTCCTCCCACC 62.475 72.222 0.00 0.00 0.00 4.61
222 223 3.077556 CTCCTCCCACCCACTCCG 61.078 72.222 0.00 0.00 0.00 4.63
223 224 3.907027 CTCCTCCCACCCACTCCGT 62.907 68.421 0.00 0.00 0.00 4.69
224 225 2.928396 CCTCCCACCCACTCCGTT 60.928 66.667 0.00 0.00 0.00 4.44
225 226 2.347490 CTCCCACCCACTCCGTTG 59.653 66.667 0.00 0.00 0.00 4.10
227 228 2.052047 CTCCCACCCACTCCGTTGTT 62.052 60.000 0.00 0.00 0.00 2.83
228 229 0.763604 TCCCACCCACTCCGTTGTTA 60.764 55.000 0.00 0.00 0.00 2.41
229 230 0.321298 CCCACCCACTCCGTTGTTAG 60.321 60.000 0.00 0.00 0.00 2.34
230 231 0.953960 CCACCCACTCCGTTGTTAGC 60.954 60.000 0.00 0.00 0.00 3.09
248 546 1.227380 CTATGTGTGGCTCTCCCGC 60.227 63.158 0.00 0.00 44.67 6.13
276 574 4.483243 CATGGCGGCGGGTTACCT 62.483 66.667 9.78 0.00 33.28 3.08
277 575 4.483243 ATGGCGGCGGGTTACCTG 62.483 66.667 9.78 5.73 33.28 4.00
304 602 1.521457 CGCTGGAGTGTGTGTGTGT 60.521 57.895 0.00 0.00 0.00 3.72
306 604 0.744414 GCTGGAGTGTGTGTGTGTGT 60.744 55.000 0.00 0.00 0.00 3.72
308 606 0.323302 TGGAGTGTGTGTGTGTGTGT 59.677 50.000 0.00 0.00 0.00 3.72
310 608 1.438651 GAGTGTGTGTGTGTGTGTGT 58.561 50.000 0.00 0.00 0.00 3.72
312 610 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
313 611 0.605050 TGTGTGTGTGTGTGTGTGCT 60.605 50.000 0.00 0.00 0.00 4.40
314 612 0.096976 GTGTGTGTGTGTGTGTGCTC 59.903 55.000 0.00 0.00 0.00 4.26
315 613 1.348250 GTGTGTGTGTGTGTGCTCG 59.652 57.895 0.00 0.00 0.00 5.03
316 614 1.813337 TGTGTGTGTGTGTGCTCGG 60.813 57.895 0.00 0.00 0.00 4.63
317 615 2.203001 TGTGTGTGTGTGCTCGGG 60.203 61.111 0.00 0.00 0.00 5.14
318 616 2.203015 GTGTGTGTGTGCTCGGGT 60.203 61.111 0.00 0.00 0.00 5.28
319 617 2.203001 TGTGTGTGTGCTCGGGTG 60.203 61.111 0.00 0.00 0.00 4.61
320 618 2.108157 GTGTGTGTGCTCGGGTGA 59.892 61.111 0.00 0.00 0.00 4.02
321 619 1.522806 GTGTGTGTGCTCGGGTGAA 60.523 57.895 0.00 0.00 0.00 3.18
322 620 1.522806 TGTGTGTGCTCGGGTGAAC 60.523 57.895 0.00 0.00 0.00 3.18
324 622 1.227527 TGTGTGCTCGGGTGAACTG 60.228 57.895 0.00 0.00 0.00 3.16
326 624 0.032952 GTGTGCTCGGGTGAACTGTA 59.967 55.000 0.00 0.00 0.00 2.74
327 625 0.753867 TGTGCTCGGGTGAACTGTAA 59.246 50.000 0.00 0.00 0.00 2.41
328 626 1.139256 TGTGCTCGGGTGAACTGTAAA 59.861 47.619 0.00 0.00 0.00 2.01
329 627 2.215196 GTGCTCGGGTGAACTGTAAAA 58.785 47.619 0.00 0.00 0.00 1.52
331 629 3.998341 GTGCTCGGGTGAACTGTAAAATA 59.002 43.478 0.00 0.00 0.00 1.40
332 630 4.453136 GTGCTCGGGTGAACTGTAAAATAA 59.547 41.667 0.00 0.00 0.00 1.40
333 631 5.049267 GTGCTCGGGTGAACTGTAAAATAAA 60.049 40.000 0.00 0.00 0.00 1.40
334 632 5.531659 TGCTCGGGTGAACTGTAAAATAAAA 59.468 36.000 0.00 0.00 0.00 1.52
380 678 9.898152 TTTTTGGGAGAAATATTGACAAAAGTT 57.102 25.926 0.00 0.00 37.55 2.66
381 679 9.541143 TTTTGGGAGAAATATTGACAAAAGTTC 57.459 29.630 0.00 0.00 33.15 3.01
382 680 8.477419 TTGGGAGAAATATTGACAAAAGTTCT 57.523 30.769 9.24 9.24 0.00 3.01
383 681 9.581289 TTGGGAGAAATATTGACAAAAGTTCTA 57.419 29.630 9.38 0.00 0.00 2.10
388 686 8.523658 AGAAATATTGACAAAAGTTCTAAGGGC 58.476 33.333 8.19 0.00 0.00 5.19
389 687 8.422577 AAATATTGACAAAAGTTCTAAGGGCT 57.577 30.769 0.00 0.00 0.00 5.19
390 688 8.422577 AATATTGACAAAAGTTCTAAGGGCTT 57.577 30.769 0.00 0.00 0.00 4.35
391 689 5.514274 TTGACAAAAGTTCTAAGGGCTTG 57.486 39.130 0.00 0.00 0.00 4.01
392 690 3.317993 TGACAAAAGTTCTAAGGGCTTGC 59.682 43.478 0.00 0.00 0.00 4.01
393 691 3.295973 ACAAAAGTTCTAAGGGCTTGCA 58.704 40.909 0.00 0.00 0.00 4.08
394 692 3.704061 ACAAAAGTTCTAAGGGCTTGCAA 59.296 39.130 0.00 0.00 0.00 4.08
395 693 4.161377 ACAAAAGTTCTAAGGGCTTGCAAA 59.839 37.500 0.00 0.00 0.00 3.68
397 695 5.351948 AAAGTTCTAAGGGCTTGCAAAAA 57.648 34.783 0.00 0.00 0.00 1.94
398 696 4.590850 AGTTCTAAGGGCTTGCAAAAAG 57.409 40.909 0.00 0.00 0.00 2.27
399 697 3.960755 AGTTCTAAGGGCTTGCAAAAAGT 59.039 39.130 0.00 0.00 0.00 2.66
400 698 4.038042 AGTTCTAAGGGCTTGCAAAAAGTC 59.962 41.667 0.00 0.00 0.00 3.01
402 700 1.111277 AAGGGCTTGCAAAAAGTCGT 58.889 45.000 0.00 0.00 0.00 4.34
403 701 0.668535 AGGGCTTGCAAAAAGTCGTC 59.331 50.000 0.00 0.00 0.00 4.20
406 704 2.053627 GGCTTGCAAAAAGTCGTCATG 58.946 47.619 0.00 0.00 0.00 3.07
408 706 3.371168 GCTTGCAAAAAGTCGTCATGAA 58.629 40.909 0.00 0.00 0.00 2.57
409 707 3.796178 GCTTGCAAAAAGTCGTCATGAAA 59.204 39.130 0.00 0.00 0.00 2.69
410 708 4.445385 GCTTGCAAAAAGTCGTCATGAAAT 59.555 37.500 0.00 0.00 0.00 2.17
413 711 4.975502 TGCAAAAAGTCGTCATGAAATCAC 59.024 37.500 0.00 0.00 0.00 3.06
414 712 4.975502 GCAAAAAGTCGTCATGAAATCACA 59.024 37.500 0.00 0.00 0.00 3.58
415 713 5.630680 GCAAAAAGTCGTCATGAAATCACAT 59.369 36.000 0.00 0.00 0.00 3.21
416 714 6.144402 GCAAAAAGTCGTCATGAAATCACATT 59.856 34.615 0.00 0.00 0.00 2.71
417 715 7.617935 GCAAAAAGTCGTCATGAAATCACATTC 60.618 37.037 0.00 0.00 0.00 2.67
418 716 5.551760 AAGTCGTCATGAAATCACATTCC 57.448 39.130 0.00 0.00 0.00 3.01
419 717 4.836825 AGTCGTCATGAAATCACATTCCT 58.163 39.130 0.00 0.00 0.00 3.36
420 718 4.633126 AGTCGTCATGAAATCACATTCCTG 59.367 41.667 0.00 0.00 0.00 3.86
421 719 4.393062 GTCGTCATGAAATCACATTCCTGT 59.607 41.667 0.00 0.00 35.44 4.00
422 720 5.580691 GTCGTCATGAAATCACATTCCTGTA 59.419 40.000 0.00 0.00 33.14 2.74
423 721 6.092122 GTCGTCATGAAATCACATTCCTGTAA 59.908 38.462 0.00 0.00 33.14 2.41
424 722 6.313658 TCGTCATGAAATCACATTCCTGTAAG 59.686 38.462 0.00 0.00 33.14 2.34
441 739 5.764131 CTGTAAGGCGTGGAAAAATAAACA 58.236 37.500 0.00 0.00 0.00 2.83
442 740 6.145338 TGTAAGGCGTGGAAAAATAAACAA 57.855 33.333 0.00 0.00 0.00 2.83
443 741 6.570692 TGTAAGGCGTGGAAAAATAAACAAA 58.429 32.000 0.00 0.00 0.00 2.83
444 742 7.210873 TGTAAGGCGTGGAAAAATAAACAAAT 58.789 30.769 0.00 0.00 0.00 2.32
445 743 7.711339 TGTAAGGCGTGGAAAAATAAACAAATT 59.289 29.630 0.00 0.00 0.00 1.82
446 744 6.779115 AGGCGTGGAAAAATAAACAAATTC 57.221 33.333 0.00 0.00 0.00 2.17
447 745 6.284459 AGGCGTGGAAAAATAAACAAATTCA 58.716 32.000 0.00 0.00 0.00 2.57
448 746 6.763610 AGGCGTGGAAAAATAAACAAATTCAA 59.236 30.769 0.00 0.00 0.00 2.69
449 747 7.443879 AGGCGTGGAAAAATAAACAAATTCAAT 59.556 29.630 0.00 0.00 0.00 2.57
450 748 7.533561 GGCGTGGAAAAATAAACAAATTCAATG 59.466 33.333 0.00 0.00 0.00 2.82
451 749 7.059374 GCGTGGAAAAATAAACAAATTCAATGC 59.941 33.333 0.00 0.00 31.09 3.56
452 750 8.281893 CGTGGAAAAATAAACAAATTCAATGCT 58.718 29.630 0.00 0.00 0.00 3.79
453 751 9.949174 GTGGAAAAATAAACAAATTCAATGCTT 57.051 25.926 0.00 0.00 0.00 3.91
461 759 7.917720 AAACAAATTCAATGCTTCAAAATGC 57.082 28.000 0.00 0.00 0.00 3.56
462 760 6.870971 ACAAATTCAATGCTTCAAAATGCT 57.129 29.167 0.00 0.00 0.00 3.79
463 761 7.266922 ACAAATTCAATGCTTCAAAATGCTT 57.733 28.000 0.00 0.00 0.00 3.91
464 762 7.708998 ACAAATTCAATGCTTCAAAATGCTTT 58.291 26.923 0.00 0.00 0.00 3.51
465 763 8.192110 ACAAATTCAATGCTTCAAAATGCTTTT 58.808 25.926 0.00 0.00 0.00 2.27
518 816 6.916360 TTTTTGCCTTCTAGGAATGTGATT 57.084 33.333 0.00 0.00 37.67 2.57
519 817 6.916360 TTTTGCCTTCTAGGAATGTGATTT 57.084 33.333 0.00 0.00 37.67 2.17
520 818 6.515272 TTTGCCTTCTAGGAATGTGATTTC 57.485 37.500 0.00 0.00 37.67 2.17
521 819 5.178096 TGCCTTCTAGGAATGTGATTTCA 57.822 39.130 0.00 0.00 37.67 2.69
522 820 5.569355 TGCCTTCTAGGAATGTGATTTCAA 58.431 37.500 0.00 0.00 37.67 2.69
523 821 5.649395 TGCCTTCTAGGAATGTGATTTCAAG 59.351 40.000 0.00 0.00 37.67 3.02
524 822 5.882557 GCCTTCTAGGAATGTGATTTCAAGA 59.117 40.000 0.00 0.00 37.67 3.02
525 823 6.183360 GCCTTCTAGGAATGTGATTTCAAGAC 60.183 42.308 0.00 0.00 37.67 3.01
526 824 6.036517 CCTTCTAGGAATGTGATTTCAAGACG 59.963 42.308 0.00 0.00 37.67 4.18
527 825 6.280855 TCTAGGAATGTGATTTCAAGACGA 57.719 37.500 0.00 0.00 0.00 4.20
528 826 6.697395 TCTAGGAATGTGATTTCAAGACGAA 58.303 36.000 0.00 0.00 0.00 3.85
529 827 7.331026 TCTAGGAATGTGATTTCAAGACGAAT 58.669 34.615 0.00 0.00 32.32 3.34
530 828 6.824305 AGGAATGTGATTTCAAGACGAATT 57.176 33.333 0.00 0.00 32.32 2.17
531 829 7.219484 AGGAATGTGATTTCAAGACGAATTT 57.781 32.000 0.00 0.00 32.32 1.82
532 830 7.661040 AGGAATGTGATTTCAAGACGAATTTT 58.339 30.769 0.00 0.00 32.32 1.82
533 831 8.143835 AGGAATGTGATTTCAAGACGAATTTTT 58.856 29.630 0.00 0.00 32.32 1.94
534 832 8.216453 GGAATGTGATTTCAAGACGAATTTTTG 58.784 33.333 0.00 0.00 32.32 2.44
535 833 6.509317 TGTGATTTCAAGACGAATTTTTGC 57.491 33.333 0.00 0.00 32.32 3.68
536 834 6.038985 TGTGATTTCAAGACGAATTTTTGCA 58.961 32.000 0.00 0.00 32.32 4.08
537 835 6.533012 TGTGATTTCAAGACGAATTTTTGCAA 59.467 30.769 0.00 0.00 32.32 4.08
538 836 7.059212 GTGATTTCAAGACGAATTTTTGCAAG 58.941 34.615 0.00 0.00 32.32 4.01
539 837 5.388225 TTTCAAGACGAATTTTTGCAAGC 57.612 34.783 0.00 0.00 32.32 4.01
540 838 4.039151 TCAAGACGAATTTTTGCAAGCA 57.961 36.364 0.00 0.00 0.00 3.91
541 839 3.796178 TCAAGACGAATTTTTGCAAGCAC 59.204 39.130 0.00 0.00 0.00 4.40
542 840 3.715628 AGACGAATTTTTGCAAGCACT 57.284 38.095 0.00 0.00 0.00 4.40
543 841 4.045636 AGACGAATTTTTGCAAGCACTT 57.954 36.364 0.00 0.00 0.00 3.16
544 842 5.181690 AGACGAATTTTTGCAAGCACTTA 57.818 34.783 0.00 0.00 0.00 2.24
545 843 5.587289 AGACGAATTTTTGCAAGCACTTAA 58.413 33.333 0.00 0.00 0.00 1.85
546 844 6.039616 AGACGAATTTTTGCAAGCACTTAAA 58.960 32.000 0.00 0.00 0.00 1.52
547 845 6.533367 AGACGAATTTTTGCAAGCACTTAAAA 59.467 30.769 0.00 0.00 0.00 1.52
548 846 6.474364 ACGAATTTTTGCAAGCACTTAAAAC 58.526 32.000 0.00 0.00 0.00 2.43
549 847 6.312672 ACGAATTTTTGCAAGCACTTAAAACT 59.687 30.769 0.00 0.00 0.00 2.66
550 848 7.148490 ACGAATTTTTGCAAGCACTTAAAACTT 60.148 29.630 0.00 0.47 0.00 2.66
551 849 7.691877 CGAATTTTTGCAAGCACTTAAAACTTT 59.308 29.630 0.00 0.00 0.00 2.66
552 850 9.340695 GAATTTTTGCAAGCACTTAAAACTTTT 57.659 25.926 0.00 0.00 0.00 2.27
555 853 9.980780 TTTTTGCAAGCACTTAAAACTTTTATC 57.019 25.926 0.00 0.00 0.00 1.75
556 854 8.709386 TTTGCAAGCACTTAAAACTTTTATCA 57.291 26.923 0.00 0.00 0.00 2.15
557 855 8.709386 TTGCAAGCACTTAAAACTTTTATCAA 57.291 26.923 0.00 0.00 0.00 2.57
558 856 8.885494 TGCAAGCACTTAAAACTTTTATCAAT 57.115 26.923 0.00 0.00 0.00 2.57
559 857 8.763356 TGCAAGCACTTAAAACTTTTATCAATG 58.237 29.630 0.00 0.00 0.00 2.82
560 858 8.764287 GCAAGCACTTAAAACTTTTATCAATGT 58.236 29.630 0.00 0.00 0.00 2.71
623 921 9.758651 ATTTTGTTTAGATTTTACTGTTCACCC 57.241 29.630 0.00 0.00 0.00 4.61
624 922 6.548441 TGTTTAGATTTTACTGTTCACCCG 57.452 37.500 0.00 0.00 0.00 5.28
625 923 6.289834 TGTTTAGATTTTACTGTTCACCCGA 58.710 36.000 0.00 0.00 0.00 5.14
626 924 6.425721 TGTTTAGATTTTACTGTTCACCCGAG 59.574 38.462 0.00 0.00 0.00 4.63
627 925 3.335579 AGATTTTACTGTTCACCCGAGC 58.664 45.455 0.00 0.00 0.00 5.03
628 926 2.922740 TTTTACTGTTCACCCGAGCT 57.077 45.000 0.00 0.00 0.00 4.09
629 927 2.450609 TTTACTGTTCACCCGAGCTC 57.549 50.000 2.73 2.73 0.00 4.09
630 928 1.334160 TTACTGTTCACCCGAGCTCA 58.666 50.000 15.40 0.00 0.00 4.26
631 929 1.557099 TACTGTTCACCCGAGCTCAT 58.443 50.000 15.40 0.00 0.00 2.90
632 930 0.687354 ACTGTTCACCCGAGCTCATT 59.313 50.000 15.40 0.00 0.00 2.57
633 931 1.072331 ACTGTTCACCCGAGCTCATTT 59.928 47.619 15.40 0.00 0.00 2.32
634 932 1.466167 CTGTTCACCCGAGCTCATTTG 59.534 52.381 15.40 6.81 0.00 2.32
635 933 1.071542 TGTTCACCCGAGCTCATTTGA 59.928 47.619 15.40 9.18 0.00 2.69
636 934 1.734465 GTTCACCCGAGCTCATTTGAG 59.266 52.381 15.40 3.13 44.75 3.02
645 943 3.840831 CTCATTTGAGCTCGGGTGA 57.159 52.632 9.64 11.31 35.13 4.02
646 944 2.099141 CTCATTTGAGCTCGGGTGAA 57.901 50.000 9.64 0.00 35.13 3.18
647 945 2.005451 CTCATTTGAGCTCGGGTGAAG 58.995 52.381 9.64 0.00 35.13 3.02
648 946 1.623311 TCATTTGAGCTCGGGTGAAGA 59.377 47.619 9.64 0.00 0.00 2.87
649 947 2.038426 TCATTTGAGCTCGGGTGAAGAA 59.962 45.455 9.64 0.00 0.00 2.52
650 948 2.631160 TTTGAGCTCGGGTGAAGAAA 57.369 45.000 9.64 0.00 0.00 2.52
651 949 1.878953 TTGAGCTCGGGTGAAGAAAC 58.121 50.000 9.64 0.00 0.00 2.78
652 950 1.048601 TGAGCTCGGGTGAAGAAACT 58.951 50.000 9.64 0.00 0.00 2.66
653 951 1.000955 TGAGCTCGGGTGAAGAAACTC 59.999 52.381 9.64 0.00 0.00 3.01
654 952 1.273886 GAGCTCGGGTGAAGAAACTCT 59.726 52.381 0.00 0.00 0.00 3.24
655 953 1.001406 AGCTCGGGTGAAGAAACTCTG 59.999 52.381 0.00 0.00 0.00 3.35
656 954 1.270358 GCTCGGGTGAAGAAACTCTGT 60.270 52.381 0.00 0.00 0.00 3.41
657 955 2.678324 CTCGGGTGAAGAAACTCTGTC 58.322 52.381 0.00 0.00 0.00 3.51
658 956 1.343465 TCGGGTGAAGAAACTCTGTCC 59.657 52.381 0.00 0.00 0.00 4.02
659 957 1.070134 CGGGTGAAGAAACTCTGTCCA 59.930 52.381 0.00 0.00 0.00 4.02
660 958 2.772287 GGGTGAAGAAACTCTGTCCAG 58.228 52.381 0.00 0.00 0.00 3.86
661 959 2.147150 GGTGAAGAAACTCTGTCCAGC 58.853 52.381 0.00 0.00 0.00 4.85
662 960 2.485479 GGTGAAGAAACTCTGTCCAGCA 60.485 50.000 0.00 0.00 0.00 4.41
663 961 3.206150 GTGAAGAAACTCTGTCCAGCAA 58.794 45.455 0.00 0.00 0.00 3.91
664 962 3.002759 GTGAAGAAACTCTGTCCAGCAAC 59.997 47.826 0.00 0.00 0.00 4.17
665 963 1.871080 AGAAACTCTGTCCAGCAACG 58.129 50.000 0.00 0.00 0.00 4.10
666 964 1.139058 AGAAACTCTGTCCAGCAACGT 59.861 47.619 0.00 0.00 0.00 3.99
858 1156 5.120830 AGCATTAAACAGTACAGAAGCTTCG 59.879 40.000 20.43 16.87 0.00 3.79
884 1182 6.301687 TCTAAGATAACTCATTCTCCGTCG 57.698 41.667 0.00 0.00 0.00 5.12
886 1184 2.034812 AGATAACTCATTCTCCGTCGCC 59.965 50.000 0.00 0.00 0.00 5.54
893 1191 4.108336 CTCATTCTCCGTCGCCATATATG 58.892 47.826 5.68 5.68 0.00 1.78
968 1267 9.862371 TTCTCTGTAAAAGAATAGTAGCTTGAG 57.138 33.333 0.00 0.00 33.37 3.02
992 1291 5.477510 AGACTTCAAGTAGCATCAGACAAG 58.522 41.667 0.00 0.00 0.00 3.16
1024 1323 4.886579 GGCAACAACATTTTCTTCCATCT 58.113 39.130 0.00 0.00 0.00 2.90
1055 1354 4.119442 TCCTTCTCGTTATTGTAGCCAC 57.881 45.455 0.00 0.00 0.00 5.01
1089 1388 0.615850 GCTCTGCCTGTAAGTCCCTT 59.384 55.000 0.00 0.00 0.00 3.95
1128 1428 5.833131 TCCTGCATAACTTGAACCTTTTTCT 59.167 36.000 0.00 0.00 0.00 2.52
1130 1430 6.421801 CCTGCATAACTTGAACCTTTTTCTTG 59.578 38.462 0.00 0.00 0.00 3.02
1147 1447 1.815003 CTTGAGAAATCCCTGTGCCAC 59.185 52.381 0.00 0.00 0.00 5.01
1205 1505 7.055667 ACCTTTCAAGATTATCGAGCTGATA 57.944 36.000 0.00 0.00 38.57 2.15
1365 1665 2.936202 ACTTCATGGACTGTTGCTGTT 58.064 42.857 0.00 0.00 0.00 3.16
1391 1691 6.989759 TCATATGAGCATTACCGTGTAATGTT 59.010 34.615 24.81 21.92 37.28 2.71
1392 1692 4.937696 TGAGCATTACCGTGTAATGTTG 57.062 40.909 24.81 11.90 37.28 3.33
1393 1693 4.320023 TGAGCATTACCGTGTAATGTTGT 58.680 39.130 24.81 16.14 37.28 3.32
1476 1778 2.549633 AATCTGCCGAGAATTTTGCG 57.450 45.000 0.00 0.00 0.00 4.85
1483 1785 1.548986 CGAGAATTTTGCGGGCATTC 58.451 50.000 0.00 0.00 0.00 2.67
1540 1843 1.597027 CAACGCCGACCCTCAAACT 60.597 57.895 0.00 0.00 0.00 2.66
1602 1909 3.197549 GCCATCCAATGTGGGTTTGTATT 59.802 43.478 0.00 0.00 38.32 1.89
1618 1928 0.602638 TATTGATCCGCATGGTCCGC 60.603 55.000 0.00 0.00 36.30 5.54
1629 1939 4.379143 GGTCCGCACGCGTTTTCC 62.379 66.667 10.22 4.37 37.81 3.13
1641 1951 2.126914 CGTTTTCCACCGCAAATTGA 57.873 45.000 0.00 0.00 0.00 2.57
1645 1955 4.116238 GTTTTCCACCGCAAATTGAAGAA 58.884 39.130 0.00 0.00 0.00 2.52
1649 1959 4.116238 TCCACCGCAAATTGAAGAAAAAC 58.884 39.130 0.00 0.00 0.00 2.43
1655 1965 3.241784 GCAAATTGAAGAAAAACGTGCGA 59.758 39.130 0.00 0.00 0.00 5.10
1665 1975 1.225855 AAACGTGCGAGAGATTTGCA 58.774 45.000 0.00 0.00 44.04 4.08
1687 1999 1.663702 GTCCGGACAACAGACACGG 60.664 63.158 29.75 0.00 45.52 4.94
1688 2000 2.357034 CCGGACAACAGACACGGG 60.357 66.667 0.00 0.00 40.79 5.28
1728 2043 2.947785 AGTCTCCCCTCCCGGTCT 60.948 66.667 0.00 0.00 0.00 3.85
1762 2077 3.825623 GCCCCATCTCCCCCTTGG 61.826 72.222 0.00 0.00 0.00 3.61
1763 2078 2.044450 CCCCATCTCCCCCTTGGA 59.956 66.667 0.00 0.00 42.41 3.53
1827 2148 2.675423 ACCGCCGCAGAGACACTA 60.675 61.111 0.00 0.00 0.00 2.74
1828 2149 2.103143 CCGCCGCAGAGACACTAG 59.897 66.667 0.00 0.00 0.00 2.57
1893 2215 2.414612 TGGACTTGTCCACCCTAAAGT 58.585 47.619 17.57 0.00 35.62 2.66
1906 2228 5.074115 CACCCTAAAGTCATTTGTACCCAA 58.926 41.667 0.00 0.00 0.00 4.12
1922 2244 2.203877 AAGTACACTCCGCCCCCA 60.204 61.111 0.00 0.00 0.00 4.96
1935 2264 2.656069 CCCCCATGTCGACGACCTT 61.656 63.158 24.33 9.92 0.00 3.50
1974 2303 0.958822 GGCAGGTGTTCGGTCAAATT 59.041 50.000 0.00 0.00 0.00 1.82
1992 2323 8.177980 GTCAAATTCCATTGAGCTTATTTGAC 57.822 34.615 17.42 17.42 46.58 3.18
2057 2394 3.430790 CGAGCATGGAGGATGAGTTGTTA 60.431 47.826 0.00 0.00 33.31 2.41
2062 2399 2.213499 GGAGGATGAGTTGTTATGCGG 58.787 52.381 0.00 0.00 0.00 5.69
2063 2400 1.599542 GAGGATGAGTTGTTATGCGGC 59.400 52.381 0.00 0.00 0.00 6.53
2068 2405 2.174835 GTTGTTATGCGGCGCGTT 59.825 55.556 32.95 21.64 0.00 4.84
2069 2406 1.015085 AGTTGTTATGCGGCGCGTTA 61.015 50.000 32.95 21.25 0.00 3.18
2087 2424 7.431668 GGCGCGTTATTGGTTTAATTAATTACA 59.568 33.333 8.43 0.00 0.00 2.41
2195 2533 2.880822 TCAATTTGAAAGAGCTCGCG 57.119 45.000 8.37 0.00 0.00 5.87
2196 2534 1.464608 TCAATTTGAAAGAGCTCGCGG 59.535 47.619 6.13 0.00 0.00 6.46
2242 2580 1.344942 GACGTTGGTGACTGCTAGCG 61.345 60.000 10.77 7.61 0.00 4.26
2249 2587 1.984570 TGACTGCTAGCGGGCTCTT 60.985 57.895 29.36 7.16 0.00 2.85
2251 2589 2.279120 CTGCTAGCGGGCTCTTCG 60.279 66.667 16.30 0.00 0.00 3.79
2263 2601 3.664025 CTCTTCGCGACATGGCCCA 62.664 63.158 9.15 0.00 0.00 5.36
2278 2616 1.090052 GCCCACCATCGCTTGACTAC 61.090 60.000 0.00 0.00 0.00 2.73
2290 2628 2.870435 GCTTGACTACATGGACAACGGT 60.870 50.000 0.00 0.00 0.00 4.83
2297 2635 1.301401 ATGGACAACGGTCACCACG 60.301 57.895 0.00 0.00 46.17 4.94
2322 2660 3.308530 TCATGATATGTGCGACTAAGCG 58.691 45.455 0.00 0.00 40.67 4.68
2334 2672 3.241995 GCGACTAAGCGTTACAAAGATGG 60.242 47.826 0.00 0.00 0.00 3.51
2361 2699 0.460987 CCATTCTCTGCAGGACGTCC 60.461 60.000 27.67 27.67 0.00 4.79
2368 2706 2.046892 GCAGGACGTCCACATGCT 60.047 61.111 35.00 11.85 38.89 3.79
2371 2709 0.107993 CAGGACGTCCACATGCTGAT 60.108 55.000 35.00 9.45 36.45 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.316167 TCCGCATAGATTCCAATGCTATTT 58.684 37.500 15.62 0.00 45.03 1.40
1 2 4.910195 TCCGCATAGATTCCAATGCTATT 58.090 39.130 15.62 0.00 45.03 1.73
2 3 4.558226 TCCGCATAGATTCCAATGCTAT 57.442 40.909 15.62 0.00 45.03 2.97
5 6 4.088823 GAATCCGCATAGATTCCAATGC 57.911 45.455 10.22 10.22 44.22 3.56
12 13 4.100035 TGACACTCTGAATCCGCATAGATT 59.900 41.667 0.00 0.00 39.19 2.40
13 14 3.638627 TGACACTCTGAATCCGCATAGAT 59.361 43.478 0.00 0.00 0.00 1.98
14 15 3.023832 TGACACTCTGAATCCGCATAGA 58.976 45.455 0.00 0.00 0.00 1.98
15 16 3.067320 TCTGACACTCTGAATCCGCATAG 59.933 47.826 0.00 0.00 0.00 2.23
16 17 3.023832 TCTGACACTCTGAATCCGCATA 58.976 45.455 0.00 0.00 0.00 3.14
17 18 1.827344 TCTGACACTCTGAATCCGCAT 59.173 47.619 0.00 0.00 0.00 4.73
18 19 1.067565 GTCTGACACTCTGAATCCGCA 60.068 52.381 2.24 0.00 0.00 5.69
19 20 1.203523 AGTCTGACACTCTGAATCCGC 59.796 52.381 10.88 0.00 0.00 5.54
29 30 1.803943 GATCGCCGAGTCTGACACT 59.196 57.895 10.88 0.00 38.45 3.55
30 31 1.583967 CGATCGCCGAGTCTGACAC 60.584 63.158 10.88 2.58 41.76 3.67
31 32 1.743995 TCGATCGCCGAGTCTGACA 60.744 57.895 11.09 0.00 43.23 3.58
32 33 3.099438 TCGATCGCCGAGTCTGAC 58.901 61.111 11.09 0.00 43.23 3.51
39 40 0.172578 ATGTCAACTTCGATCGCCGA 59.827 50.000 11.09 0.00 46.94 5.54
40 41 0.298707 CATGTCAACTTCGATCGCCG 59.701 55.000 11.09 6.07 40.25 6.46
41 42 0.026803 GCATGTCAACTTCGATCGCC 59.973 55.000 11.09 0.00 0.00 5.54
42 43 0.721154 TGCATGTCAACTTCGATCGC 59.279 50.000 11.09 0.00 0.00 4.58
43 44 2.349580 ACATGCATGTCAACTTCGATCG 59.650 45.455 26.61 9.36 35.87 3.69
55 56 1.000060 GTGTTGCTTGGACATGCATGT 60.000 47.619 31.82 31.82 45.16 3.21
56 57 1.271379 AGTGTTGCTTGGACATGCATG 59.729 47.619 25.09 25.09 40.45 4.06
57 58 1.624336 AGTGTTGCTTGGACATGCAT 58.376 45.000 12.72 0.00 40.45 3.96
58 59 2.153645 CTAGTGTTGCTTGGACATGCA 58.846 47.619 8.57 8.57 39.31 3.96
59 60 2.426522 TCTAGTGTTGCTTGGACATGC 58.573 47.619 0.00 3.50 0.00 4.06
60 61 5.396484 CATTTCTAGTGTTGCTTGGACATG 58.604 41.667 0.00 0.00 0.00 3.21
61 62 4.082571 GCATTTCTAGTGTTGCTTGGACAT 60.083 41.667 6.37 0.00 32.41 3.06
62 63 3.253188 GCATTTCTAGTGTTGCTTGGACA 59.747 43.478 6.37 0.00 32.41 4.02
63 64 3.253188 TGCATTTCTAGTGTTGCTTGGAC 59.747 43.478 12.39 0.00 36.10 4.02
64 65 3.253188 GTGCATTTCTAGTGTTGCTTGGA 59.747 43.478 12.39 0.00 36.10 3.53
65 66 3.004629 TGTGCATTTCTAGTGTTGCTTGG 59.995 43.478 12.39 0.00 36.10 3.61
66 67 4.227512 TGTGCATTTCTAGTGTTGCTTG 57.772 40.909 12.39 0.00 36.10 4.01
67 68 5.458041 AATGTGCATTTCTAGTGTTGCTT 57.542 34.783 12.39 0.52 36.10 3.91
68 69 5.458041 AAATGTGCATTTCTAGTGTTGCT 57.542 34.783 4.48 0.00 36.34 3.91
79 80 5.864418 ATCTATGCTGGAAATGTGCATTT 57.136 34.783 9.60 9.60 43.85 2.32
85 86 5.872963 TGCTGATATCTATGCTGGAAATGT 58.127 37.500 3.98 0.00 0.00 2.71
87 88 4.942483 GCTGCTGATATCTATGCTGGAAAT 59.058 41.667 3.98 0.00 0.00 2.17
92 93 2.236644 AGGGCTGCTGATATCTATGCTG 59.763 50.000 3.98 10.35 0.00 4.41
115 116 2.486636 TAGCTGCGTGAAGGTCGTGG 62.487 60.000 0.00 0.00 0.00 4.94
192 193 2.759973 AGGAGAAGGCGCCATCGA 60.760 61.111 31.54 0.00 36.29 3.59
202 203 1.268283 GGAGTGGGTGGGAGGAGAAG 61.268 65.000 0.00 0.00 0.00 2.85
215 216 2.930040 CACATAGCTAACAACGGAGTGG 59.070 50.000 0.00 0.00 45.00 4.00
222 223 3.600388 AGAGCCACACATAGCTAACAAC 58.400 45.455 0.00 0.00 40.11 3.32
223 224 3.369471 GGAGAGCCACACATAGCTAACAA 60.369 47.826 0.00 0.00 40.11 2.83
224 225 2.168521 GGAGAGCCACACATAGCTAACA 59.831 50.000 0.00 0.00 40.11 2.41
225 226 2.483889 GGGAGAGCCACACATAGCTAAC 60.484 54.545 0.00 0.00 40.11 2.34
227 228 1.414158 GGGAGAGCCACACATAGCTA 58.586 55.000 0.00 0.00 40.11 3.32
228 229 1.680522 CGGGAGAGCCACACATAGCT 61.681 60.000 0.00 0.00 43.55 3.32
229 230 1.227380 CGGGAGAGCCACACATAGC 60.227 63.158 0.00 0.00 35.15 2.97
230 231 1.227380 GCGGGAGAGCCACACATAG 60.227 63.158 0.00 0.00 35.15 2.23
260 558 4.483243 CAGGTAACCCGCCGCCAT 62.483 66.667 0.00 0.00 35.12 4.40
284 582 3.705638 CACACACACTCCAGCGCG 61.706 66.667 0.00 0.00 0.00 6.86
285 583 2.588877 ACACACACACTCCAGCGC 60.589 61.111 0.00 0.00 0.00 5.92
286 584 1.521457 ACACACACACACTCCAGCG 60.521 57.895 0.00 0.00 0.00 5.18
287 585 0.744414 ACACACACACACACTCCAGC 60.744 55.000 0.00 0.00 0.00 4.85
288 586 1.009078 CACACACACACACACTCCAG 58.991 55.000 0.00 0.00 0.00 3.86
289 587 0.323302 ACACACACACACACACTCCA 59.677 50.000 0.00 0.00 0.00 3.86
290 588 0.726827 CACACACACACACACACTCC 59.273 55.000 0.00 0.00 0.00 3.85
291 589 1.128507 CACACACACACACACACACTC 59.871 52.381 0.00 0.00 0.00 3.51
292 590 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
293 591 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
304 602 1.522806 GTTCACCCGAGCACACACA 60.523 57.895 0.00 0.00 0.00 3.72
306 604 1.227527 CAGTTCACCCGAGCACACA 60.228 57.895 0.00 0.00 0.00 3.72
308 606 0.753867 TTACAGTTCACCCGAGCACA 59.246 50.000 0.00 0.00 0.00 4.57
310 608 2.623878 TTTTACAGTTCACCCGAGCA 57.376 45.000 0.00 0.00 0.00 4.26
355 653 9.541143 GAACTTTTGTCAATATTTCTCCCAAAA 57.459 29.630 0.00 0.00 0.00 2.44
356 654 8.923270 AGAACTTTTGTCAATATTTCTCCCAAA 58.077 29.630 3.73 0.00 0.00 3.28
357 655 8.477419 AGAACTTTTGTCAATATTTCTCCCAA 57.523 30.769 3.73 0.00 0.00 4.12
362 660 8.523658 GCCCTTAGAACTTTTGTCAATATTTCT 58.476 33.333 11.47 11.47 0.00 2.52
363 661 8.523658 AGCCCTTAGAACTTTTGTCAATATTTC 58.476 33.333 0.00 0.00 0.00 2.17
364 662 8.422577 AGCCCTTAGAACTTTTGTCAATATTT 57.577 30.769 0.00 0.00 0.00 1.40
365 663 8.306761 CAAGCCCTTAGAACTTTTGTCAATATT 58.693 33.333 0.00 0.00 0.00 1.28
366 664 7.577616 GCAAGCCCTTAGAACTTTTGTCAATAT 60.578 37.037 0.00 0.00 0.00 1.28
368 666 5.509670 GCAAGCCCTTAGAACTTTTGTCAAT 60.510 40.000 0.00 0.00 0.00 2.57
371 669 3.317993 TGCAAGCCCTTAGAACTTTTGTC 59.682 43.478 0.00 0.00 0.00 3.18
372 670 3.295973 TGCAAGCCCTTAGAACTTTTGT 58.704 40.909 0.00 0.00 0.00 2.83
374 672 5.351948 TTTTGCAAGCCCTTAGAACTTTT 57.648 34.783 0.00 0.00 0.00 2.27
375 673 5.104941 ACTTTTTGCAAGCCCTTAGAACTTT 60.105 36.000 0.00 0.00 0.00 2.66
376 674 4.405680 ACTTTTTGCAAGCCCTTAGAACTT 59.594 37.500 0.00 0.00 0.00 2.66
377 675 3.960755 ACTTTTTGCAAGCCCTTAGAACT 59.039 39.130 0.00 0.00 0.00 3.01
380 678 2.552315 CGACTTTTTGCAAGCCCTTAGA 59.448 45.455 0.00 0.00 0.00 2.10
381 679 2.293399 ACGACTTTTTGCAAGCCCTTAG 59.707 45.455 0.00 0.00 0.00 2.18
382 680 2.292292 GACGACTTTTTGCAAGCCCTTA 59.708 45.455 0.00 0.00 0.00 2.69
383 681 1.067060 GACGACTTTTTGCAAGCCCTT 59.933 47.619 0.00 0.00 0.00 3.95
388 686 5.686841 TGATTTCATGACGACTTTTTGCAAG 59.313 36.000 0.00 0.00 0.00 4.01
389 687 5.458452 GTGATTTCATGACGACTTTTTGCAA 59.542 36.000 0.00 0.00 0.00 4.08
390 688 4.975502 GTGATTTCATGACGACTTTTTGCA 59.024 37.500 0.00 0.00 0.00 4.08
391 689 4.975502 TGTGATTTCATGACGACTTTTTGC 59.024 37.500 0.00 0.00 0.00 3.68
392 690 7.148918 GGAATGTGATTTCATGACGACTTTTTG 60.149 37.037 0.00 0.00 0.00 2.44
393 691 6.863126 GGAATGTGATTTCATGACGACTTTTT 59.137 34.615 0.00 0.00 0.00 1.94
394 692 6.207417 AGGAATGTGATTTCATGACGACTTTT 59.793 34.615 0.00 0.00 0.00 2.27
395 693 5.707298 AGGAATGTGATTTCATGACGACTTT 59.293 36.000 0.00 0.00 0.00 2.66
397 695 4.633126 CAGGAATGTGATTTCATGACGACT 59.367 41.667 0.00 0.00 39.18 4.18
398 696 4.393062 ACAGGAATGTGATTTCATGACGAC 59.607 41.667 0.00 0.00 39.18 4.34
399 697 4.578871 ACAGGAATGTGATTTCATGACGA 58.421 39.130 0.00 0.00 39.18 4.20
400 698 4.952262 ACAGGAATGTGATTTCATGACG 57.048 40.909 0.00 0.00 39.18 4.35
402 700 5.357878 GCCTTACAGGAATGTGATTTCATGA 59.642 40.000 5.92 0.00 39.18 3.07
403 701 5.585390 GCCTTACAGGAATGTGATTTCATG 58.415 41.667 0.00 0.00 41.77 3.07
406 704 3.689649 ACGCCTTACAGGAATGTGATTTC 59.310 43.478 0.00 0.00 37.67 2.17
408 706 3.009723 CACGCCTTACAGGAATGTGATT 58.990 45.455 0.00 0.00 37.67 2.57
409 707 2.632377 CACGCCTTACAGGAATGTGAT 58.368 47.619 0.00 0.00 37.67 3.06
410 708 1.338674 CCACGCCTTACAGGAATGTGA 60.339 52.381 10.25 0.00 37.67 3.58
413 711 2.107950 TTCCACGCCTTACAGGAATG 57.892 50.000 0.00 0.00 37.67 2.67
414 712 2.871096 TTTCCACGCCTTACAGGAAT 57.129 45.000 0.00 0.00 39.67 3.01
415 713 2.642154 TTTTCCACGCCTTACAGGAA 57.358 45.000 0.00 0.00 37.67 3.36
416 714 2.642154 TTTTTCCACGCCTTACAGGA 57.358 45.000 0.00 0.00 37.67 3.86
417 715 5.158494 GTTTATTTTTCCACGCCTTACAGG 58.842 41.667 0.00 0.00 38.80 4.00
418 716 5.764131 TGTTTATTTTTCCACGCCTTACAG 58.236 37.500 0.00 0.00 0.00 2.74
419 717 5.769484 TGTTTATTTTTCCACGCCTTACA 57.231 34.783 0.00 0.00 0.00 2.41
420 718 7.646446 ATTTGTTTATTTTTCCACGCCTTAC 57.354 32.000 0.00 0.00 0.00 2.34
421 719 7.926555 TGAATTTGTTTATTTTTCCACGCCTTA 59.073 29.630 0.00 0.00 0.00 2.69
422 720 6.763610 TGAATTTGTTTATTTTTCCACGCCTT 59.236 30.769 0.00 0.00 0.00 4.35
423 721 6.284459 TGAATTTGTTTATTTTTCCACGCCT 58.716 32.000 0.00 0.00 0.00 5.52
424 722 6.532365 TGAATTTGTTTATTTTTCCACGCC 57.468 33.333 0.00 0.00 0.00 5.68
425 723 7.059374 GCATTGAATTTGTTTATTTTTCCACGC 59.941 33.333 0.00 0.00 0.00 5.34
426 724 8.281893 AGCATTGAATTTGTTTATTTTTCCACG 58.718 29.630 0.00 0.00 0.00 4.94
427 725 9.949174 AAGCATTGAATTTGTTTATTTTTCCAC 57.051 25.926 0.00 0.00 0.00 4.02
435 733 9.615295 GCATTTTGAAGCATTGAATTTGTTTAT 57.385 25.926 0.00 0.00 0.00 1.40
436 734 8.838365 AGCATTTTGAAGCATTGAATTTGTTTA 58.162 25.926 0.00 0.00 0.00 2.01
437 735 7.708998 AGCATTTTGAAGCATTGAATTTGTTT 58.291 26.923 0.00 0.00 0.00 2.83
438 736 7.266922 AGCATTTTGAAGCATTGAATTTGTT 57.733 28.000 0.00 0.00 0.00 2.83
439 737 6.870971 AGCATTTTGAAGCATTGAATTTGT 57.129 29.167 0.00 0.00 0.00 2.83
495 793 6.916360 AATCACATTCCTAGAAGGCAAAAA 57.084 33.333 0.00 0.00 34.61 1.94
496 794 6.493115 TGAAATCACATTCCTAGAAGGCAAAA 59.507 34.615 0.00 0.00 34.61 2.44
497 795 6.009589 TGAAATCACATTCCTAGAAGGCAAA 58.990 36.000 0.00 0.00 34.61 3.68
498 796 5.569355 TGAAATCACATTCCTAGAAGGCAA 58.431 37.500 0.00 0.00 34.61 4.52
499 797 5.178096 TGAAATCACATTCCTAGAAGGCA 57.822 39.130 0.00 0.00 34.61 4.75
500 798 5.882557 TCTTGAAATCACATTCCTAGAAGGC 59.117 40.000 0.00 0.00 34.61 4.35
501 799 6.036517 CGTCTTGAAATCACATTCCTAGAAGG 59.963 42.308 0.00 0.00 36.46 3.46
502 800 6.813649 TCGTCTTGAAATCACATTCCTAGAAG 59.186 38.462 0.00 0.00 0.00 2.85
503 801 6.697395 TCGTCTTGAAATCACATTCCTAGAA 58.303 36.000 0.00 0.00 0.00 2.10
504 802 6.280855 TCGTCTTGAAATCACATTCCTAGA 57.719 37.500 0.00 0.00 0.00 2.43
505 803 6.968131 TTCGTCTTGAAATCACATTCCTAG 57.032 37.500 0.00 0.00 32.37 3.02
506 804 7.921786 AATTCGTCTTGAAATCACATTCCTA 57.078 32.000 0.00 0.00 40.71 2.94
507 805 6.824305 AATTCGTCTTGAAATCACATTCCT 57.176 33.333 0.00 0.00 40.71 3.36
508 806 7.873739 AAAATTCGTCTTGAAATCACATTCC 57.126 32.000 0.00 0.00 40.71 3.01
509 807 7.737311 GCAAAAATTCGTCTTGAAATCACATTC 59.263 33.333 0.00 0.00 40.71 2.67
510 808 7.224362 TGCAAAAATTCGTCTTGAAATCACATT 59.776 29.630 0.00 0.00 40.71 2.71
511 809 6.700960 TGCAAAAATTCGTCTTGAAATCACAT 59.299 30.769 0.00 0.00 40.71 3.21
512 810 6.038985 TGCAAAAATTCGTCTTGAAATCACA 58.961 32.000 0.00 0.00 40.71 3.58
513 811 6.509317 TGCAAAAATTCGTCTTGAAATCAC 57.491 33.333 0.00 0.00 40.71 3.06
514 812 6.292274 GCTTGCAAAAATTCGTCTTGAAATCA 60.292 34.615 0.00 0.00 40.71 2.57
515 813 6.067039 GCTTGCAAAAATTCGTCTTGAAATC 58.933 36.000 0.00 0.00 40.71 2.17
516 814 5.523188 TGCTTGCAAAAATTCGTCTTGAAAT 59.477 32.000 0.00 0.00 40.71 2.17
517 815 4.867047 TGCTTGCAAAAATTCGTCTTGAAA 59.133 33.333 0.00 0.00 40.71 2.69
518 816 4.267452 GTGCTTGCAAAAATTCGTCTTGAA 59.733 37.500 0.00 0.00 41.81 2.69
519 817 3.796178 GTGCTTGCAAAAATTCGTCTTGA 59.204 39.130 0.00 0.00 0.00 3.02
520 818 3.798337 AGTGCTTGCAAAAATTCGTCTTG 59.202 39.130 0.00 0.00 0.00 3.02
521 819 4.045636 AGTGCTTGCAAAAATTCGTCTT 57.954 36.364 0.00 0.00 0.00 3.01
522 820 3.715628 AGTGCTTGCAAAAATTCGTCT 57.284 38.095 0.00 0.00 0.00 4.18
523 821 5.881637 TTAAGTGCTTGCAAAAATTCGTC 57.118 34.783 0.00 0.00 0.00 4.20
524 822 6.312672 AGTTTTAAGTGCTTGCAAAAATTCGT 59.687 30.769 0.00 0.00 0.00 3.85
525 823 6.704819 AGTTTTAAGTGCTTGCAAAAATTCG 58.295 32.000 0.00 0.00 0.00 3.34
526 824 8.894409 AAAGTTTTAAGTGCTTGCAAAAATTC 57.106 26.923 0.00 0.00 29.83 2.17
529 827 9.980780 GATAAAAGTTTTAAGTGCTTGCAAAAA 57.019 25.926 11.92 0.00 0.00 1.94
530 828 9.155975 TGATAAAAGTTTTAAGTGCTTGCAAAA 57.844 25.926 11.92 0.00 0.00 2.44
531 829 8.709386 TGATAAAAGTTTTAAGTGCTTGCAAA 57.291 26.923 11.92 0.00 0.00 3.68
532 830 8.709386 TTGATAAAAGTTTTAAGTGCTTGCAA 57.291 26.923 11.92 0.00 0.00 4.08
533 831 8.763356 CATTGATAAAAGTTTTAAGTGCTTGCA 58.237 29.630 11.92 0.00 0.00 4.08
534 832 8.764287 ACATTGATAAAAGTTTTAAGTGCTTGC 58.236 29.630 11.92 0.00 0.00 4.01
597 895 9.758651 GGGTGAACAGTAAAATCTAAACAAAAT 57.241 29.630 0.00 0.00 0.00 1.82
598 896 7.916450 CGGGTGAACAGTAAAATCTAAACAAAA 59.084 33.333 0.00 0.00 0.00 2.44
599 897 7.282675 TCGGGTGAACAGTAAAATCTAAACAAA 59.717 33.333 0.00 0.00 0.00 2.83
600 898 6.766944 TCGGGTGAACAGTAAAATCTAAACAA 59.233 34.615 0.00 0.00 0.00 2.83
601 899 6.289834 TCGGGTGAACAGTAAAATCTAAACA 58.710 36.000 0.00 0.00 0.00 2.83
602 900 6.620089 GCTCGGGTGAACAGTAAAATCTAAAC 60.620 42.308 0.00 0.00 0.00 2.01
603 901 5.410439 GCTCGGGTGAACAGTAAAATCTAAA 59.590 40.000 0.00 0.00 0.00 1.85
604 902 4.933400 GCTCGGGTGAACAGTAAAATCTAA 59.067 41.667 0.00 0.00 0.00 2.10
605 903 4.222145 AGCTCGGGTGAACAGTAAAATCTA 59.778 41.667 0.00 0.00 0.00 1.98
606 904 3.008049 AGCTCGGGTGAACAGTAAAATCT 59.992 43.478 0.00 0.00 0.00 2.40
607 905 3.335579 AGCTCGGGTGAACAGTAAAATC 58.664 45.455 0.00 0.00 0.00 2.17
608 906 3.244422 TGAGCTCGGGTGAACAGTAAAAT 60.244 43.478 9.64 0.00 0.00 1.82
609 907 2.103432 TGAGCTCGGGTGAACAGTAAAA 59.897 45.455 9.64 0.00 0.00 1.52
610 908 1.689813 TGAGCTCGGGTGAACAGTAAA 59.310 47.619 9.64 0.00 0.00 2.01
611 909 1.334160 TGAGCTCGGGTGAACAGTAA 58.666 50.000 9.64 0.00 0.00 2.24
612 910 1.557099 ATGAGCTCGGGTGAACAGTA 58.443 50.000 9.64 0.00 0.00 2.74
613 911 0.687354 AATGAGCTCGGGTGAACAGT 59.313 50.000 9.64 0.00 0.00 3.55
614 912 1.466167 CAAATGAGCTCGGGTGAACAG 59.534 52.381 9.64 0.00 0.00 3.16
615 913 1.071542 TCAAATGAGCTCGGGTGAACA 59.928 47.619 9.64 0.00 0.00 3.18
616 914 1.734465 CTCAAATGAGCTCGGGTGAAC 59.266 52.381 9.64 0.00 35.13 3.18
617 915 2.099141 CTCAAATGAGCTCGGGTGAA 57.901 50.000 9.64 0.00 35.13 3.18
618 916 3.840831 CTCAAATGAGCTCGGGTGA 57.159 52.632 9.64 10.63 35.13 4.02
627 925 2.005451 CTTCACCCGAGCTCAAATGAG 58.995 52.381 15.40 6.05 44.75 2.90
628 926 1.623311 TCTTCACCCGAGCTCAAATGA 59.377 47.619 15.40 10.42 0.00 2.57
629 927 2.099141 TCTTCACCCGAGCTCAAATG 57.901 50.000 15.40 8.10 0.00 2.32
630 928 2.814336 GTTTCTTCACCCGAGCTCAAAT 59.186 45.455 15.40 0.00 0.00 2.32
631 929 2.158813 AGTTTCTTCACCCGAGCTCAAA 60.159 45.455 15.40 0.86 0.00 2.69
632 930 1.416401 AGTTTCTTCACCCGAGCTCAA 59.584 47.619 15.40 0.00 0.00 3.02
633 931 1.000955 GAGTTTCTTCACCCGAGCTCA 59.999 52.381 15.40 0.00 0.00 4.26
634 932 1.273886 AGAGTTTCTTCACCCGAGCTC 59.726 52.381 2.73 2.73 0.00 4.09
635 933 1.001406 CAGAGTTTCTTCACCCGAGCT 59.999 52.381 0.00 0.00 0.00 4.09
636 934 1.270358 ACAGAGTTTCTTCACCCGAGC 60.270 52.381 0.00 0.00 0.00 5.03
637 935 2.610727 GGACAGAGTTTCTTCACCCGAG 60.611 54.545 0.00 0.00 0.00 4.63
638 936 1.343465 GGACAGAGTTTCTTCACCCGA 59.657 52.381 0.00 0.00 0.00 5.14
639 937 1.070134 TGGACAGAGTTTCTTCACCCG 59.930 52.381 0.00 0.00 0.00 5.28
640 938 2.772287 CTGGACAGAGTTTCTTCACCC 58.228 52.381 0.00 0.00 0.00 4.61
641 939 2.147150 GCTGGACAGAGTTTCTTCACC 58.853 52.381 3.00 0.00 0.00 4.02
642 940 2.838736 TGCTGGACAGAGTTTCTTCAC 58.161 47.619 3.00 0.00 0.00 3.18
643 941 3.206150 GTTGCTGGACAGAGTTTCTTCA 58.794 45.455 3.00 0.00 0.00 3.02
644 942 2.221981 CGTTGCTGGACAGAGTTTCTTC 59.778 50.000 3.00 0.00 0.00 2.87
645 943 2.213499 CGTTGCTGGACAGAGTTTCTT 58.787 47.619 3.00 0.00 0.00 2.52
646 944 1.139058 ACGTTGCTGGACAGAGTTTCT 59.861 47.619 3.00 0.00 0.00 2.52
647 945 1.527311 GACGTTGCTGGACAGAGTTTC 59.473 52.381 3.00 0.00 0.00 2.78
648 946 1.134521 TGACGTTGCTGGACAGAGTTT 60.135 47.619 3.00 0.00 0.00 2.66
649 947 0.464036 TGACGTTGCTGGACAGAGTT 59.536 50.000 3.00 0.00 0.00 3.01
650 948 0.032678 CTGACGTTGCTGGACAGAGT 59.967 55.000 3.00 0.00 0.00 3.24
651 949 0.032678 ACTGACGTTGCTGGACAGAG 59.967 55.000 3.00 0.00 33.53 3.35
652 950 1.324383 TACTGACGTTGCTGGACAGA 58.676 50.000 3.00 0.00 33.53 3.41
653 951 2.148916 TTACTGACGTTGCTGGACAG 57.851 50.000 0.00 0.00 35.14 3.51
654 952 2.206750 GTTTACTGACGTTGCTGGACA 58.793 47.619 0.00 0.00 0.00 4.02
655 953 2.206750 TGTTTACTGACGTTGCTGGAC 58.793 47.619 0.00 0.00 0.00 4.02
656 954 2.605837 TGTTTACTGACGTTGCTGGA 57.394 45.000 0.00 0.00 0.00 3.86
657 955 3.498397 AGAATGTTTACTGACGTTGCTGG 59.502 43.478 0.00 0.00 0.00 4.85
658 956 4.449068 AGAGAATGTTTACTGACGTTGCTG 59.551 41.667 0.00 0.00 0.00 4.41
659 957 4.632153 AGAGAATGTTTACTGACGTTGCT 58.368 39.130 0.00 0.00 0.00 3.91
660 958 4.992381 AGAGAATGTTTACTGACGTTGC 57.008 40.909 0.00 0.00 0.00 4.17
661 959 7.755373 TCAGATAGAGAATGTTTACTGACGTTG 59.245 37.037 0.00 0.00 0.00 4.10
662 960 7.827701 TCAGATAGAGAATGTTTACTGACGTT 58.172 34.615 0.00 0.00 0.00 3.99
663 961 7.392494 TCAGATAGAGAATGTTTACTGACGT 57.608 36.000 0.00 0.00 0.00 4.34
858 1156 6.807789 ACGGAGAATGAGTTATCTTAGAACC 58.192 40.000 0.00 0.00 0.00 3.62
884 1182 3.748048 AGATTCACACGCACATATATGGC 59.252 43.478 16.96 14.85 0.00 4.40
886 1184 6.421801 TCTGAAGATTCACACGCACATATATG 59.578 38.462 11.29 11.29 32.90 1.78
893 1191 1.125021 CGTCTGAAGATTCACACGCAC 59.875 52.381 9.80 0.00 41.28 5.34
967 1266 4.769488 TGTCTGATGCTACTTGAAGTCTCT 59.231 41.667 0.00 0.00 0.00 3.10
968 1267 5.065704 TGTCTGATGCTACTTGAAGTCTC 57.934 43.478 0.00 0.00 0.00 3.36
992 1291 1.527034 TGTTGTTGCCATCTCTCTGC 58.473 50.000 0.00 0.00 0.00 4.26
1024 1323 2.839486 ACGAGAAGGATCTTGCACAA 57.161 45.000 0.00 0.00 40.28 3.33
1055 1354 2.674380 AGCAAAGGAGGGCAAGCG 60.674 61.111 0.00 0.00 0.00 4.68
1089 1388 7.987458 AGTTATGCAGGAATCTCGAGAAAATAA 59.013 33.333 20.91 11.98 0.00 1.40
1128 1428 1.144708 TGTGGCACAGGGATTTCTCAA 59.855 47.619 17.96 0.00 41.80 3.02
1130 1430 1.003580 TCTGTGGCACAGGGATTTCTC 59.996 52.381 38.88 2.03 45.94 2.87
1147 1447 3.411446 TGGAAACACTTAGCCATGTCTG 58.589 45.455 0.00 0.00 33.40 3.51
1192 1492 3.982576 TTCACGCTATCAGCTCGATAA 57.017 42.857 0.00 0.00 39.60 1.75
1199 1499 1.260033 GTGAGCATTCACGCTATCAGC 59.740 52.381 0.00 0.00 44.01 4.26
1343 1643 2.880890 ACAGCAACAGTCCATGAAGTTC 59.119 45.455 0.00 0.00 0.00 3.01
1365 1665 6.989759 ACATTACACGGTAATGCTCATATGAA 59.010 34.615 24.55 0.00 38.20 2.57
1430 1732 7.606839 TGCATGCAATCCAAAGATTTCATTTTA 59.393 29.630 20.30 0.00 41.67 1.52
1476 1778 6.660521 TCATGTGAATATATTCCAGAATGCCC 59.339 38.462 20.29 0.00 35.97 5.36
1483 1785 8.152898 TCAGAGGTTCATGTGAATATATTCCAG 58.847 37.037 20.29 9.29 36.33 3.86
1589 1895 2.088423 GCGGATCAATACAAACCCACA 58.912 47.619 0.00 0.00 0.00 4.17
1596 1903 2.571212 GGACCATGCGGATCAATACAA 58.429 47.619 0.00 0.00 35.59 2.41
1602 1909 3.780173 TGCGGACCATGCGGATCA 61.780 61.111 0.00 0.00 35.59 2.92
1629 1939 3.549873 ACGTTTTTCTTCAATTTGCGGTG 59.450 39.130 0.00 0.00 0.00 4.94
1641 1951 4.527564 CAAATCTCTCGCACGTTTTTCTT 58.472 39.130 0.00 0.00 0.00 2.52
1645 1955 1.601903 TGCAAATCTCTCGCACGTTTT 59.398 42.857 0.00 0.00 0.00 2.43
1649 1959 0.737367 TCCTGCAAATCTCTCGCACG 60.737 55.000 0.00 0.00 0.00 5.34
1655 1965 0.539051 CCGGACTCCTGCAAATCTCT 59.461 55.000 0.00 0.00 0.00 3.10
1665 1975 2.352817 GTCTGTTGTCCGGACTCCT 58.647 57.895 33.39 0.00 44.69 3.69
1688 2000 4.139234 GGCCGGGGTGTCGTACTC 62.139 72.222 2.18 0.00 0.00 2.59
1728 2043 0.960364 GGCGCAGTGGAAGGAAATGA 60.960 55.000 10.83 0.00 0.00 2.57
1906 2228 2.040606 ATGGGGGCGGAGTGTACT 59.959 61.111 0.00 0.00 0.00 2.73
1922 2244 0.460284 GCCATGAAGGTCGTCGACAT 60.460 55.000 25.64 17.37 40.61 3.06
1935 2264 2.358615 GCGTGGTGTCTGCCATGA 60.359 61.111 8.35 0.00 45.87 3.07
1974 2303 4.951715 AGCATGTCAAATAAGCTCAATGGA 59.048 37.500 0.00 0.00 0.00 3.41
1992 2323 6.140895 CGTACTCTAAAAGACGACATAGCATG 59.859 42.308 0.00 0.00 37.50 4.06
2057 2394 1.928706 AAACCAATAACGCGCCGCAT 61.929 50.000 10.75 0.00 0.00 4.73
2062 2399 8.325367 TGTAATTAATTAAACCAATAACGCGC 57.675 30.769 5.73 0.00 0.00 6.86
2153 2491 6.316890 TGATTTGGCGTTATTAACTACCTTCC 59.683 38.462 13.49 3.88 0.00 3.46
2169 2507 4.240096 AGCTCTTTCAAATTGATTTGGCG 58.760 39.130 14.53 5.75 45.39 5.69
2195 2533 3.901797 CTGTTGGCCGTCCTCACCC 62.902 68.421 0.00 0.00 0.00 4.61
2196 2534 2.358737 CTGTTGGCCGTCCTCACC 60.359 66.667 0.00 0.00 0.00 4.02
2242 2580 2.892425 CCATGTCGCGAAGAGCCC 60.892 66.667 12.06 0.00 44.76 5.19
2263 2601 1.831106 TCCATGTAGTCAAGCGATGGT 59.169 47.619 0.00 0.00 0.00 3.55
2265 2603 2.892374 TGTCCATGTAGTCAAGCGATG 58.108 47.619 0.00 0.00 0.00 3.84
2278 2616 1.565156 CGTGGTGACCGTTGTCCATG 61.565 60.000 0.00 0.00 41.01 3.66
2290 2628 2.168313 ACATATCATGAGTGCGTGGTGA 59.832 45.455 0.09 0.00 0.00 4.02
2313 2651 4.171005 TCCATCTTTGTAACGCTTAGTCG 58.829 43.478 0.00 0.00 0.00 4.18
2322 2660 6.949352 ATGGTCATCATCCATCTTTGTAAC 57.051 37.500 0.00 0.00 41.21 2.50
2334 2672 3.139850 CCTGCAGAGAATGGTCATCATC 58.860 50.000 17.39 0.00 34.44 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.