Multiple sequence alignment - TraesCS3B01G095400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G095400 chr3B 100.000 2504 0 0 1 2504 64244202 64241699 0.000000e+00 4625.0
1 TraesCS3B01G095400 chr3B 96.078 153 5 1 1 152 246303989 246303837 5.350000e-62 248.0
2 TraesCS3B01G095400 chr3D 94.277 1258 59 8 590 1836 40731309 40730054 0.000000e+00 1912.0
3 TraesCS3B01G095400 chr3D 96.552 290 5 2 2215 2503 40728153 40727868 2.250000e-130 475.0
4 TraesCS3B01G095400 chr3D 87.770 417 16 4 1828 2218 40728682 40728275 2.940000e-124 455.0
5 TraesCS3B01G095400 chr3D 97.561 41 1 0 1747 1787 126947360 126947320 1.240000e-08 71.3
6 TraesCS3B01G095400 chr3A 89.444 1241 69 25 505 1715 52376850 52375642 0.000000e+00 1509.0
7 TraesCS3B01G095400 chr3A 79.612 206 17 12 300 502 52377098 52376915 9.400000e-25 124.0
8 TraesCS3B01G095400 chr3A 86.667 105 11 3 146 249 52377194 52377092 2.040000e-21 113.0
9 TraesCS3B01G095400 chr7B 86.198 797 75 16 737 1505 14909517 14910306 0.000000e+00 830.0
10 TraesCS3B01G095400 chr4B 96.622 148 5 0 1 148 20487388 20487535 1.920000e-61 246.0
11 TraesCS3B01G095400 chr4B 95.333 150 7 0 1 150 492222985 492223134 3.220000e-59 239.0
12 TraesCS3B01G095400 chr4B 92.547 161 10 2 1 160 671654061 671653902 1.940000e-56 230.0
13 TraesCS3B01G095400 chr6B 97.203 143 4 0 1 143 702817602 702817744 2.490000e-60 243.0
14 TraesCS3B01G095400 chr2B 97.203 143 4 0 1 143 23589118 23589260 2.490000e-60 243.0
15 TraesCS3B01G095400 chr2B 94.340 159 5 4 1 155 232243522 232243364 8.950000e-60 241.0
16 TraesCS3B01G095400 chr2B 77.725 211 32 11 2151 2355 621210762 621210963 5.660000e-22 115.0
17 TraesCS3B01G095400 chr1B 97.183 142 4 0 1 142 526563394 526563535 8.950000e-60 241.0
18 TraesCS3B01G095400 chr1B 95.918 147 6 0 1 147 313332196 313332050 3.220000e-59 239.0
19 TraesCS3B01G095400 chr2D 77.578 223 37 10 2150 2366 526135010 526134795 3.380000e-24 122.0
20 TraesCS3B01G095400 chr2D 95.122 41 2 0 1747 1787 473091552 473091592 5.780000e-07 65.8
21 TraesCS3B01G095400 chr7D 96.226 53 1 1 2179 2230 40156565 40156513 4.440000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G095400 chr3B 64241699 64244202 2503 True 4625.000000 4625 100.000000 1 2504 1 chr3B.!!$R1 2503
1 TraesCS3B01G095400 chr3D 40727868 40731309 3441 True 947.333333 1912 92.866333 590 2503 3 chr3D.!!$R2 1913
2 TraesCS3B01G095400 chr3A 52375642 52377194 1552 True 582.000000 1509 85.241000 146 1715 3 chr3A.!!$R1 1569
3 TraesCS3B01G095400 chr7B 14909517 14910306 789 False 830.000000 830 86.198000 737 1505 1 chr7B.!!$F1 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 325 0.249868 TCTCTTGGACAAGTGCACGG 60.25 55.0 12.01 10.63 39.38 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 3423 0.4546 GTCGAGGTTCCACTATCGCA 59.545 55.0 0.0 0.0 35.23 5.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.594881 TCTTTCTAGAGATTTCAACAAGTGAC 57.405 34.615 0.00 0.00 35.39 3.67
26 27 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
27 28 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
28 29 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
29 30 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
30 31 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
32 33 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
33 34 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
34 35 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
35 36 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
36 37 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
37 38 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
38 39 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
39 40 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
40 41 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
41 42 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
42 43 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
43 44 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
44 45 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
45 46 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
46 47 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
47 48 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
48 49 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
49 50 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
50 51 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
51 52 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
52 53 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
53 54 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
54 55 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
55 56 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
56 57 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
57 58 6.183360 CGGAGCAAAATGAGTGAATCTACATT 60.183 38.462 0.00 0.00 34.99 2.71
58 59 7.192232 GGAGCAAAATGAGTGAATCTACATTC 58.808 38.462 0.00 0.00 39.24 2.67
59 60 7.066766 GGAGCAAAATGAGTGAATCTACATTCT 59.933 37.037 0.00 0.00 39.49 2.40
60 61 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
61 62 9.453572 AGCAAAATGAGTGAATCTACATTCTAA 57.546 29.630 0.00 0.00 39.49 2.10
68 69 9.725019 TGAGTGAATCTACATTCTAAAACATGT 57.275 29.630 0.00 0.00 39.49 3.21
70 71 9.950496 AGTGAATCTACATTCTAAAACATGTCT 57.050 29.630 0.00 0.00 39.49 3.41
99 100 7.615582 ACATCTGTATGTTGTAGTCCATTTG 57.384 36.000 0.00 0.00 44.07 2.32
100 101 7.394016 ACATCTGTATGTTGTAGTCCATTTGA 58.606 34.615 0.00 0.00 44.07 2.69
101 102 7.550551 ACATCTGTATGTTGTAGTCCATTTGAG 59.449 37.037 0.00 0.00 44.07 3.02
102 103 7.239763 TCTGTATGTTGTAGTCCATTTGAGA 57.760 36.000 0.00 0.00 0.00 3.27
103 104 7.851228 TCTGTATGTTGTAGTCCATTTGAGAT 58.149 34.615 0.00 0.00 0.00 2.75
104 105 7.765819 TCTGTATGTTGTAGTCCATTTGAGATG 59.234 37.037 0.00 0.00 0.00 2.90
105 106 7.619965 TGTATGTTGTAGTCCATTTGAGATGA 58.380 34.615 0.00 0.00 0.00 2.92
106 107 6.992063 ATGTTGTAGTCCATTTGAGATGAC 57.008 37.500 0.00 0.00 0.00 3.06
107 108 6.114187 TGTTGTAGTCCATTTGAGATGACT 57.886 37.500 0.00 0.00 0.00 3.41
108 109 7.239763 TGTTGTAGTCCATTTGAGATGACTA 57.760 36.000 0.00 0.00 0.00 2.59
109 110 7.323420 TGTTGTAGTCCATTTGAGATGACTAG 58.677 38.462 0.00 0.00 0.00 2.57
110 111 7.178451 TGTTGTAGTCCATTTGAGATGACTAGA 59.822 37.037 0.00 0.00 0.00 2.43
111 112 7.718334 TGTAGTCCATTTGAGATGACTAGAA 57.282 36.000 0.00 0.00 0.00 2.10
112 113 8.134202 TGTAGTCCATTTGAGATGACTAGAAA 57.866 34.615 0.00 0.00 0.00 2.52
113 114 8.253810 TGTAGTCCATTTGAGATGACTAGAAAG 58.746 37.037 0.00 0.00 0.00 2.62
114 115 7.487822 AGTCCATTTGAGATGACTAGAAAGA 57.512 36.000 0.00 0.00 0.00 2.52
115 116 7.327214 AGTCCATTTGAGATGACTAGAAAGAC 58.673 38.462 0.00 0.00 0.00 3.01
116 117 7.038729 AGTCCATTTGAGATGACTAGAAAGACA 60.039 37.037 0.00 0.00 0.00 3.41
117 118 7.604164 GTCCATTTGAGATGACTAGAAAGACAA 59.396 37.037 0.00 0.00 31.23 3.18
118 119 8.324306 TCCATTTGAGATGACTAGAAAGACAAT 58.676 33.333 0.00 0.00 31.23 2.71
119 120 8.954350 CCATTTGAGATGACTAGAAAGACAATT 58.046 33.333 0.00 0.00 31.23 2.32
126 127 9.319143 AGATGACTAGAAAGACAATTATTTCGG 57.681 33.333 0.00 5.23 39.78 4.30
127 128 9.314321 GATGACTAGAAAGACAATTATTTCGGA 57.686 33.333 0.00 0.00 39.78 4.55
128 129 9.667107 ATGACTAGAAAGACAATTATTTCGGAA 57.333 29.630 0.00 0.00 39.78 4.30
129 130 8.932791 TGACTAGAAAGACAATTATTTCGGAAC 58.067 33.333 0.00 0.00 39.78 3.62
169 170 2.183478 TGCAATCAGTGTACAGTGGG 57.817 50.000 26.55 18.17 32.72 4.61
171 172 2.076863 GCAATCAGTGTACAGTGGGTC 58.923 52.381 26.55 12.32 32.72 4.46
177 178 3.135712 TCAGTGTACAGTGGGTCAAACAT 59.864 43.478 26.55 0.00 32.72 2.71
179 180 5.060506 CAGTGTACAGTGGGTCAAACATAA 58.939 41.667 21.02 0.00 0.00 1.90
180 181 5.705441 CAGTGTACAGTGGGTCAAACATAAT 59.295 40.000 21.02 0.00 0.00 1.28
181 182 5.705441 AGTGTACAGTGGGTCAAACATAATG 59.295 40.000 1.37 0.00 0.00 1.90
184 185 5.902613 ACAGTGGGTCAAACATAATGATG 57.097 39.130 0.00 0.00 39.16 3.07
191 192 7.706179 GTGGGTCAAACATAATGATGTAAATGG 59.294 37.037 0.00 0.00 45.93 3.16
242 244 2.095853 GCCCAAGAATCACATACACACG 59.904 50.000 0.00 0.00 0.00 4.49
243 245 2.677836 CCCAAGAATCACATACACACGG 59.322 50.000 0.00 0.00 0.00 4.94
244 246 2.677836 CCAAGAATCACATACACACGGG 59.322 50.000 0.00 0.00 0.00 5.28
245 247 3.595173 CAAGAATCACATACACACGGGA 58.405 45.455 0.00 0.00 0.00 5.14
246 248 3.973206 AGAATCACATACACACGGGAA 57.027 42.857 0.00 0.00 0.00 3.97
247 249 3.596214 AGAATCACATACACACGGGAAC 58.404 45.455 0.00 0.00 0.00 3.62
264 266 4.555348 GGAACCATACAAAACACACGAA 57.445 40.909 0.00 0.00 0.00 3.85
265 267 4.284485 GGAACCATACAAAACACACGAAC 58.716 43.478 0.00 0.00 0.00 3.95
266 268 4.201930 GGAACCATACAAAACACACGAACA 60.202 41.667 0.00 0.00 0.00 3.18
267 269 5.506649 GGAACCATACAAAACACACGAACAT 60.507 40.000 0.00 0.00 0.00 2.71
268 270 5.103290 ACCATACAAAACACACGAACATC 57.897 39.130 0.00 0.00 0.00 3.06
269 271 4.819630 ACCATACAAAACACACGAACATCT 59.180 37.500 0.00 0.00 0.00 2.90
270 272 5.146460 CCATACAAAACACACGAACATCTG 58.854 41.667 0.00 0.00 0.00 2.90
271 273 5.049749 CCATACAAAACACACGAACATCTGA 60.050 40.000 0.00 0.00 0.00 3.27
272 274 6.348458 CCATACAAAACACACGAACATCTGAT 60.348 38.462 0.00 0.00 0.00 2.90
273 275 4.847633 ACAAAACACACGAACATCTGATG 58.152 39.130 15.83 15.83 0.00 3.07
322 324 1.800805 ATCTCTTGGACAAGTGCACG 58.199 50.000 12.01 0.00 39.38 5.34
323 325 0.249868 TCTCTTGGACAAGTGCACGG 60.250 55.000 12.01 10.63 39.38 4.94
354 356 9.408648 TGTCCTCTGTTTTCTCTTTATTTCTTT 57.591 29.630 0.00 0.00 0.00 2.52
355 357 9.885934 GTCCTCTGTTTTCTCTTTATTTCTTTC 57.114 33.333 0.00 0.00 0.00 2.62
356 358 9.853177 TCCTCTGTTTTCTCTTTATTTCTTTCT 57.147 29.630 0.00 0.00 0.00 2.52
357 359 9.890352 CCTCTGTTTTCTCTTTATTTCTTTCTG 57.110 33.333 0.00 0.00 0.00 3.02
358 360 9.890352 CTCTGTTTTCTCTTTATTTCTTTCTGG 57.110 33.333 0.00 0.00 0.00 3.86
360 362 9.670719 CTGTTTTCTCTTTATTTCTTTCTGGTC 57.329 33.333 0.00 0.00 0.00 4.02
361 363 9.408648 TGTTTTCTCTTTATTTCTTTCTGGTCT 57.591 29.630 0.00 0.00 0.00 3.85
370 372 9.691362 TTTATTTCTTTCTGGTCTTTACAATGC 57.309 29.630 0.00 0.00 0.00 3.56
371 373 5.356882 TTCTTTCTGGTCTTTACAATGCG 57.643 39.130 0.00 0.00 0.00 4.73
372 374 4.637276 TCTTTCTGGTCTTTACAATGCGA 58.363 39.130 0.00 0.00 0.00 5.10
373 375 5.245531 TCTTTCTGGTCTTTACAATGCGAT 58.754 37.500 0.00 0.00 0.00 4.58
374 376 4.944962 TTCTGGTCTTTACAATGCGATG 57.055 40.909 0.00 0.00 0.00 3.84
375 377 3.270027 TCTGGTCTTTACAATGCGATGG 58.730 45.455 0.00 0.00 0.00 3.51
376 378 3.009723 CTGGTCTTTACAATGCGATGGT 58.990 45.455 0.00 0.00 0.00 3.55
377 379 4.081365 TCTGGTCTTTACAATGCGATGGTA 60.081 41.667 0.00 0.00 0.00 3.25
389 391 8.445275 ACAATGCGATGGTACTATATCAAAAA 57.555 30.769 0.00 0.00 0.00 1.94
435 437 8.641498 AGAAAGAAATTCTCATTTGGCTAAGA 57.359 30.769 0.00 0.00 45.42 2.10
447 449 8.071122 TCATTTGGCTAAGATTTTGTTTTTCG 57.929 30.769 0.00 0.00 0.00 3.46
449 451 5.523438 TGGCTAAGATTTTGTTTTTCGGT 57.477 34.783 0.00 0.00 0.00 4.69
491 493 3.437049 ACTGCTTCTCGAGGTAAAATTGC 59.563 43.478 13.56 6.31 0.00 3.56
493 495 2.223044 GCTTCTCGAGGTAAAATTGCCG 60.223 50.000 13.56 0.00 38.06 5.69
496 498 1.396996 CTCGAGGTAAAATTGCCGTGG 59.603 52.381 3.91 0.00 38.06 4.94
502 504 2.166664 GGTAAAATTGCCGTGGCCATTA 59.833 45.455 9.72 0.00 35.78 1.90
503 505 3.368531 GGTAAAATTGCCGTGGCCATTAA 60.369 43.478 9.72 2.21 35.78 1.40
534 598 1.268999 TGTGTTTCGCAGAAATGCCAC 60.269 47.619 6.93 9.99 45.90 5.01
551 615 4.211125 TGCCACTTTTACTGTTGGAATCA 58.789 39.130 0.00 0.00 0.00 2.57
573 637 2.033801 CCACTGCACCTCTTTCAACAAG 59.966 50.000 0.00 0.00 0.00 3.16
574 638 2.945008 CACTGCACCTCTTTCAACAAGA 59.055 45.455 0.00 0.00 0.00 3.02
575 639 3.378112 CACTGCACCTCTTTCAACAAGAA 59.622 43.478 0.00 0.00 0.00 2.52
576 640 4.016444 ACTGCACCTCTTTCAACAAGAAA 58.984 39.130 0.00 0.00 43.71 2.52
577 641 4.462483 ACTGCACCTCTTTCAACAAGAAAA 59.538 37.500 0.00 0.00 45.11 2.29
578 642 4.743493 TGCACCTCTTTCAACAAGAAAAC 58.257 39.130 0.00 0.00 45.11 2.43
579 643 4.219507 TGCACCTCTTTCAACAAGAAAACA 59.780 37.500 0.00 0.00 45.11 2.83
580 644 5.105392 TGCACCTCTTTCAACAAGAAAACAT 60.105 36.000 0.00 0.00 45.11 2.71
581 645 5.812127 GCACCTCTTTCAACAAGAAAACATT 59.188 36.000 0.00 0.00 45.11 2.71
582 646 6.313658 GCACCTCTTTCAACAAGAAAACATTT 59.686 34.615 0.00 0.00 45.11 2.32
583 647 7.148423 GCACCTCTTTCAACAAGAAAACATTTT 60.148 33.333 0.00 0.00 45.11 1.82
584 648 8.720562 CACCTCTTTCAACAAGAAAACATTTTT 58.279 29.630 0.00 0.00 45.11 1.94
585 649 8.720562 ACCTCTTTCAACAAGAAAACATTTTTG 58.279 29.630 0.00 0.00 45.11 2.44
617 681 4.383989 GGAGCTCTGAAATCTGAATCCAGT 60.384 45.833 14.64 0.00 41.16 4.00
624 688 0.467384 ATCTGAATCCAGTGCTCCCG 59.533 55.000 0.00 0.00 41.16 5.14
626 690 0.460987 CTGAATCCAGTGCTCCCGAC 60.461 60.000 0.00 0.00 35.70 4.79
791 855 0.885150 TGGCAACATAAACGCGGTCA 60.885 50.000 12.47 0.00 46.17 4.02
802 866 0.737715 ACGCGGTCAGATTCAGAAGC 60.738 55.000 12.47 0.00 0.00 3.86
815 879 1.741770 AGAAGCCGACGCATCAACC 60.742 57.895 0.00 0.00 35.12 3.77
1011 1107 2.361610 CTTGCCATGGCTTCCGGT 60.362 61.111 35.53 0.00 42.51 5.28
1032 1128 4.074526 TGGCTCTGCTCCGTGCTC 62.075 66.667 0.00 0.00 43.37 4.26
1035 1131 2.183811 CTCTGCTCCGTGCTCCTG 59.816 66.667 0.00 0.00 43.37 3.86
1424 1523 4.651867 CCAGTTCAGGATGGCCAG 57.348 61.111 13.05 0.00 36.16 4.85
1585 1688 2.815503 TGCATGTTGATCTGTTCCACTG 59.184 45.455 0.00 0.00 0.00 3.66
1616 1722 8.910944 TCTATATATTTGCCCCGTCTTCTATAC 58.089 37.037 0.00 0.00 0.00 1.47
1640 1762 1.825474 TCCTCTGCTACAGCCTACAAC 59.175 52.381 0.00 0.00 41.18 3.32
1741 1866 8.474831 TGATTGGTTTCGATCTATTCAGAACTA 58.525 33.333 0.00 0.00 35.34 2.24
1747 1872 7.867305 TTCGATCTATTCAGAACTACTGTCT 57.133 36.000 0.00 0.00 45.86 3.41
1749 1874 6.483974 TCGATCTATTCAGAACTACTGTCTCC 59.516 42.308 0.00 0.00 45.86 3.71
1750 1875 6.565060 CGATCTATTCAGAACTACTGTCTCCG 60.565 46.154 0.00 0.00 45.86 4.63
1751 1876 5.498393 TCTATTCAGAACTACTGTCTCCGT 58.502 41.667 0.00 0.00 45.86 4.69
1801 1926 6.947464 CCAATTTATGGGACGGATAGAGTAT 58.053 40.000 0.00 0.00 46.27 2.12
1849 3354 0.307453 TGTTAGCGTTTGTGCAGCAG 59.693 50.000 0.00 0.00 37.31 4.24
1895 3400 0.178967 TGCACCTGGATGCTTTTGGA 60.179 50.000 17.81 0.00 46.28 3.53
1904 3409 1.615392 GATGCTTTTGGAACTGCTGGT 59.385 47.619 0.00 0.00 0.00 4.00
1918 3423 3.634910 ACTGCTGGTTGTTCCGTTATTTT 59.365 39.130 0.00 0.00 39.52 1.82
1992 3515 6.866770 TCGTACTTCTCACTCCAACTAAATTG 59.133 38.462 0.00 0.00 38.12 2.32
2042 3565 9.762933 CCTGTGAGAATTTCTTAAAATTTCCAA 57.237 29.630 0.00 0.00 43.48 3.53
2148 3679 1.000506 GACAAGTTCGCACCTAGTCCA 59.999 52.381 0.00 0.00 0.00 4.02
2181 3712 3.299503 CCCCCTTGTATTTTGGGATCAG 58.700 50.000 0.00 0.00 43.47 2.90
2340 3997 9.811655 GATCAAACTTTGCCTAAAAATAAAAGC 57.188 29.630 0.00 0.00 32.33 3.51
2354 4011 8.991243 AAAAATAAAAGCGACCTAATAAACCC 57.009 30.769 0.00 0.00 0.00 4.11
2416 4073 4.261801 CATTTTACCCTGTGGACTAGTGG 58.738 47.826 0.00 0.00 34.81 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
1 2 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2 3 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3 4 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
4 5 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
5 6 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
6 7 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
7 8 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
8 9 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
9 10 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
10 11 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
11 12 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
12 13 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
13 14 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
14 15 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
15 16 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
16 17 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
17 18 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
18 19 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
19 20 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
20 21 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
21 22 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
22 23 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
23 24 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
24 25 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
25 26 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
26 27 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
27 28 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
28 29 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
29 30 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
30 31 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
31 32 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
32 33 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
33 34 6.690194 ATGTAGATTCACTCATTTTGCTCC 57.310 37.500 0.00 0.00 0.00 4.70
34 35 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
35 36 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
42 43 9.725019 ACATGTTTTAGAATGTAGATTCACTCA 57.275 29.630 14.46 6.83 40.59 3.41
44 45 9.950496 AGACATGTTTTAGAATGTAGATTCACT 57.050 29.630 14.46 0.00 40.59 3.41
73 74 9.330063 CAAATGGACTACAACATACAGATGTAT 57.670 33.333 0.00 0.00 45.93 2.29
74 75 8.536175 TCAAATGGACTACAACATACAGATGTA 58.464 33.333 0.00 0.00 45.93 2.29
76 77 7.765819 TCTCAAATGGACTACAACATACAGATG 59.234 37.037 0.00 0.00 39.16 2.90
77 78 7.851228 TCTCAAATGGACTACAACATACAGAT 58.149 34.615 0.00 0.00 0.00 2.90
78 79 7.239763 TCTCAAATGGACTACAACATACAGA 57.760 36.000 0.00 0.00 0.00 3.41
79 80 7.765819 TCATCTCAAATGGACTACAACATACAG 59.234 37.037 0.00 0.00 0.00 2.74
80 81 7.549134 GTCATCTCAAATGGACTACAACATACA 59.451 37.037 0.00 0.00 0.00 2.29
81 82 7.766278 AGTCATCTCAAATGGACTACAACATAC 59.234 37.037 0.00 0.00 38.74 2.39
82 83 7.851228 AGTCATCTCAAATGGACTACAACATA 58.149 34.615 0.00 0.00 38.74 2.29
83 84 6.715280 AGTCATCTCAAATGGACTACAACAT 58.285 36.000 0.00 0.00 38.74 2.71
84 85 6.114187 AGTCATCTCAAATGGACTACAACA 57.886 37.500 0.00 0.00 38.74 3.33
85 86 7.548097 TCTAGTCATCTCAAATGGACTACAAC 58.452 38.462 0.00 0.00 40.76 3.32
86 87 7.718334 TCTAGTCATCTCAAATGGACTACAA 57.282 36.000 0.00 0.00 40.76 2.41
87 88 7.718334 TTCTAGTCATCTCAAATGGACTACA 57.282 36.000 0.00 0.00 40.76 2.74
88 89 8.470805 TCTTTCTAGTCATCTCAAATGGACTAC 58.529 37.037 0.00 0.00 40.76 2.73
89 90 8.470805 GTCTTTCTAGTCATCTCAAATGGACTA 58.529 37.037 0.00 0.00 40.76 2.59
90 91 7.038729 TGTCTTTCTAGTCATCTCAAATGGACT 60.039 37.037 0.00 0.00 42.76 3.85
91 92 7.099764 TGTCTTTCTAGTCATCTCAAATGGAC 58.900 38.462 0.00 0.00 0.00 4.02
92 93 7.244886 TGTCTTTCTAGTCATCTCAAATGGA 57.755 36.000 0.00 0.00 0.00 3.41
93 94 7.912056 TTGTCTTTCTAGTCATCTCAAATGG 57.088 36.000 0.00 0.00 0.00 3.16
100 101 9.319143 CCGAAATAATTGTCTTTCTAGTCATCT 57.681 33.333 0.00 0.00 30.80 2.90
101 102 9.314321 TCCGAAATAATTGTCTTTCTAGTCATC 57.686 33.333 0.00 0.00 30.80 2.92
102 103 9.667107 TTCCGAAATAATTGTCTTTCTAGTCAT 57.333 29.630 0.00 0.00 30.80 3.06
103 104 8.932791 GTTCCGAAATAATTGTCTTTCTAGTCA 58.067 33.333 0.00 0.00 30.80 3.41
104 105 8.108782 CGTTCCGAAATAATTGTCTTTCTAGTC 58.891 37.037 0.00 0.00 30.80 2.59
105 106 7.064253 CCGTTCCGAAATAATTGTCTTTCTAGT 59.936 37.037 0.00 0.00 30.80 2.57
106 107 7.277098 TCCGTTCCGAAATAATTGTCTTTCTAG 59.723 37.037 0.00 0.00 30.80 2.43
107 108 7.098477 TCCGTTCCGAAATAATTGTCTTTCTA 58.902 34.615 0.00 0.00 30.80 2.10
108 109 5.935789 TCCGTTCCGAAATAATTGTCTTTCT 59.064 36.000 0.00 0.00 30.80 2.52
109 110 6.173191 TCCGTTCCGAAATAATTGTCTTTC 57.827 37.500 0.00 0.00 0.00 2.62
110 111 5.123344 CCTCCGTTCCGAAATAATTGTCTTT 59.877 40.000 0.00 0.00 0.00 2.52
111 112 4.634443 CCTCCGTTCCGAAATAATTGTCTT 59.366 41.667 0.00 0.00 0.00 3.01
112 113 4.189231 CCTCCGTTCCGAAATAATTGTCT 58.811 43.478 0.00 0.00 0.00 3.41
113 114 3.311596 CCCTCCGTTCCGAAATAATTGTC 59.688 47.826 0.00 0.00 0.00 3.18
114 115 3.054948 TCCCTCCGTTCCGAAATAATTGT 60.055 43.478 0.00 0.00 0.00 2.71
115 116 3.537580 TCCCTCCGTTCCGAAATAATTG 58.462 45.455 0.00 0.00 0.00 2.32
116 117 3.199289 ACTCCCTCCGTTCCGAAATAATT 59.801 43.478 0.00 0.00 0.00 1.40
117 118 2.770232 ACTCCCTCCGTTCCGAAATAAT 59.230 45.455 0.00 0.00 0.00 1.28
118 119 2.181975 ACTCCCTCCGTTCCGAAATAA 58.818 47.619 0.00 0.00 0.00 1.40
119 120 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
120 121 1.755380 CTACTCCCTCCGTTCCGAAAT 59.245 52.381 0.00 0.00 0.00 2.17
121 122 1.180029 CTACTCCCTCCGTTCCGAAA 58.820 55.000 0.00 0.00 0.00 3.46
122 123 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
123 124 0.329261 TTCTACTCCCTCCGTTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
124 125 1.180029 TTTCTACTCCCTCCGTTCCG 58.820 55.000 0.00 0.00 0.00 4.30
125 126 3.690475 TTTTTCTACTCCCTCCGTTCC 57.310 47.619 0.00 0.00 0.00 3.62
158 159 5.703592 TCATTATGTTTGACCCACTGTACAC 59.296 40.000 0.00 0.00 0.00 2.90
165 166 7.706179 CCATTTACATCATTATGTTTGACCCAC 59.294 37.037 0.00 0.00 44.07 4.61
211 213 4.220382 TGTGATTCTTGGGCGAAATTGAAT 59.780 37.500 0.00 0.00 0.00 2.57
214 216 3.574284 TGTGATTCTTGGGCGAAATTG 57.426 42.857 0.00 0.00 0.00 2.32
242 244 2.879646 TCGTGTGTTTTGTATGGTTCCC 59.120 45.455 0.00 0.00 0.00 3.97
243 245 4.201930 TGTTCGTGTGTTTTGTATGGTTCC 60.202 41.667 0.00 0.00 0.00 3.62
244 246 4.911053 TGTTCGTGTGTTTTGTATGGTTC 58.089 39.130 0.00 0.00 0.00 3.62
245 247 4.966965 TGTTCGTGTGTTTTGTATGGTT 57.033 36.364 0.00 0.00 0.00 3.67
246 248 4.819630 AGATGTTCGTGTGTTTTGTATGGT 59.180 37.500 0.00 0.00 0.00 3.55
247 249 5.049749 TCAGATGTTCGTGTGTTTTGTATGG 60.050 40.000 0.00 0.00 0.00 2.74
248 250 5.984627 TCAGATGTTCGTGTGTTTTGTATG 58.015 37.500 0.00 0.00 0.00 2.39
249 251 6.204688 ACATCAGATGTTCGTGTGTTTTGTAT 59.795 34.615 10.53 0.00 41.63 2.29
250 252 5.525745 ACATCAGATGTTCGTGTGTTTTGTA 59.474 36.000 10.53 0.00 41.63 2.41
251 253 4.335315 ACATCAGATGTTCGTGTGTTTTGT 59.665 37.500 10.53 0.00 41.63 2.83
252 254 4.847633 ACATCAGATGTTCGTGTGTTTTG 58.152 39.130 10.53 0.00 41.63 2.44
282 284 9.057089 AGAGATTTTCTAGATGTTCGTGTTTTT 57.943 29.630 0.00 0.00 33.23 1.94
283 285 8.608844 AGAGATTTTCTAGATGTTCGTGTTTT 57.391 30.769 0.00 0.00 33.23 2.43
284 286 8.499162 CAAGAGATTTTCTAGATGTTCGTGTTT 58.501 33.333 0.00 0.00 34.14 2.83
285 287 7.118390 CCAAGAGATTTTCTAGATGTTCGTGTT 59.882 37.037 0.00 0.00 34.14 3.32
286 288 6.591834 CCAAGAGATTTTCTAGATGTTCGTGT 59.408 38.462 0.00 0.00 34.14 4.49
287 289 6.813649 TCCAAGAGATTTTCTAGATGTTCGTG 59.186 38.462 0.00 0.00 34.14 4.35
288 290 6.814146 GTCCAAGAGATTTTCTAGATGTTCGT 59.186 38.462 0.00 0.00 34.14 3.85
289 291 6.813649 TGTCCAAGAGATTTTCTAGATGTTCG 59.186 38.462 0.00 0.00 34.14 3.95
290 292 8.553459 TTGTCCAAGAGATTTTCTAGATGTTC 57.447 34.615 0.00 0.00 34.14 3.18
291 293 8.160106 ACTTGTCCAAGAGATTTTCTAGATGTT 58.840 33.333 13.69 0.00 40.79 2.71
292 294 7.605691 CACTTGTCCAAGAGATTTTCTAGATGT 59.394 37.037 13.69 0.00 40.79 3.06
293 295 7.413877 GCACTTGTCCAAGAGATTTTCTAGATG 60.414 40.741 13.69 0.00 40.79 2.90
294 296 6.597280 GCACTTGTCCAAGAGATTTTCTAGAT 59.403 38.462 13.69 0.00 40.79 1.98
295 297 5.934625 GCACTTGTCCAAGAGATTTTCTAGA 59.065 40.000 13.69 0.00 40.79 2.43
296 298 5.702670 TGCACTTGTCCAAGAGATTTTCTAG 59.297 40.000 13.69 0.00 40.79 2.43
297 299 5.470098 GTGCACTTGTCCAAGAGATTTTCTA 59.530 40.000 10.32 0.00 40.79 2.10
298 300 4.276926 GTGCACTTGTCCAAGAGATTTTCT 59.723 41.667 10.32 0.00 40.79 2.52
304 306 0.249868 CCGTGCACTTGTCCAAGAGA 60.250 55.000 16.19 0.00 40.79 3.10
307 309 1.507141 GACCCGTGCACTTGTCCAAG 61.507 60.000 16.19 5.51 43.79 3.61
322 324 1.070289 AGAAAACAGAGGACACGACCC 59.930 52.381 0.00 0.00 0.00 4.46
323 325 2.036089 AGAGAAAACAGAGGACACGACC 59.964 50.000 0.00 0.00 0.00 4.79
354 356 3.270027 CCATCGCATTGTAAAGACCAGA 58.730 45.455 0.00 0.00 0.00 3.86
355 357 3.009723 ACCATCGCATTGTAAAGACCAG 58.990 45.455 0.00 0.00 0.00 4.00
356 358 3.066291 ACCATCGCATTGTAAAGACCA 57.934 42.857 0.00 0.00 0.00 4.02
357 359 4.189231 AGTACCATCGCATTGTAAAGACC 58.811 43.478 0.00 0.00 0.00 3.85
358 360 8.758633 ATATAGTACCATCGCATTGTAAAGAC 57.241 34.615 0.00 0.00 0.00 3.01
360 362 8.757164 TGATATAGTACCATCGCATTGTAAAG 57.243 34.615 0.00 0.00 0.00 1.85
361 363 9.549078 TTTGATATAGTACCATCGCATTGTAAA 57.451 29.630 0.00 0.00 0.00 2.01
365 367 9.897744 AATTTTTGATATAGTACCATCGCATTG 57.102 29.630 0.00 0.00 0.00 2.82
367 369 8.443160 CGAATTTTTGATATAGTACCATCGCAT 58.557 33.333 0.00 0.00 0.00 4.73
369 371 7.793902 ACGAATTTTTGATATAGTACCATCGC 58.206 34.615 0.00 0.00 0.00 4.58
404 406 9.049523 GCCAAATGAGAATTTCTTTCTTTCTTT 57.950 29.630 0.00 0.00 44.88 2.52
407 409 9.696917 TTAGCCAAATGAGAATTTCTTTCTTTC 57.303 29.630 0.00 0.00 44.88 2.62
408 410 9.702494 CTTAGCCAAATGAGAATTTCTTTCTTT 57.298 29.630 0.00 0.00 44.88 2.52
409 411 9.082313 TCTTAGCCAAATGAGAATTTCTTTCTT 57.918 29.630 0.00 0.00 44.88 2.52
411 413 9.866798 AATCTTAGCCAAATGAGAATTTCTTTC 57.133 29.630 0.00 0.00 34.31 2.62
414 416 9.649167 CAAAATCTTAGCCAAATGAGAATTTCT 57.351 29.630 0.00 0.00 0.00 2.52
415 417 9.428097 ACAAAATCTTAGCCAAATGAGAATTTC 57.572 29.630 0.00 0.00 0.00 2.17
416 418 9.783081 AACAAAATCTTAGCCAAATGAGAATTT 57.217 25.926 0.00 0.00 0.00 1.82
419 421 9.612066 AAAAACAAAATCTTAGCCAAATGAGAA 57.388 25.926 0.00 0.00 0.00 2.87
421 423 8.216453 CGAAAAACAAAATCTTAGCCAAATGAG 58.784 33.333 0.00 0.00 0.00 2.90
463 465 3.194005 ACCTCGAGAAGCAGTCAAAAA 57.806 42.857 15.71 0.00 0.00 1.94
468 470 4.436183 GCAATTTTACCTCGAGAAGCAGTC 60.436 45.833 15.71 0.00 0.00 3.51
502 504 4.323417 TGCGAAACACAGAATCTACCATT 58.677 39.130 0.00 0.00 0.00 3.16
503 505 3.935203 CTGCGAAACACAGAATCTACCAT 59.065 43.478 0.00 0.00 37.32 3.55
527 591 5.304101 TGATTCCAACAGTAAAAGTGGCATT 59.696 36.000 0.00 0.00 0.00 3.56
551 615 1.064758 TGTTGAAAGAGGTGCAGTGGT 60.065 47.619 0.00 0.00 0.00 4.16
557 621 4.743493 TGTTTTCTTGTTGAAAGAGGTGC 58.257 39.130 0.00 0.00 44.40 5.01
573 637 6.912051 GCTCCATGTTTTCCAAAAATGTTTTC 59.088 34.615 0.00 0.00 0.00 2.29
574 638 6.602803 AGCTCCATGTTTTCCAAAAATGTTTT 59.397 30.769 0.00 0.00 0.00 2.43
575 639 6.121590 AGCTCCATGTTTTCCAAAAATGTTT 58.878 32.000 0.00 0.00 0.00 2.83
576 640 5.683681 AGCTCCATGTTTTCCAAAAATGTT 58.316 33.333 0.00 0.00 0.00 2.71
577 641 5.070847 AGAGCTCCATGTTTTCCAAAAATGT 59.929 36.000 10.93 0.00 0.00 2.71
578 642 5.407387 CAGAGCTCCATGTTTTCCAAAAATG 59.593 40.000 10.93 0.00 0.00 2.32
579 643 5.305128 TCAGAGCTCCATGTTTTCCAAAAAT 59.695 36.000 10.93 0.00 0.00 1.82
580 644 4.648762 TCAGAGCTCCATGTTTTCCAAAAA 59.351 37.500 10.93 0.00 0.00 1.94
581 645 4.214310 TCAGAGCTCCATGTTTTCCAAAA 58.786 39.130 10.93 0.00 0.00 2.44
582 646 3.831323 TCAGAGCTCCATGTTTTCCAAA 58.169 40.909 10.93 0.00 0.00 3.28
583 647 3.507162 TCAGAGCTCCATGTTTTCCAA 57.493 42.857 10.93 0.00 0.00 3.53
584 648 3.507162 TTCAGAGCTCCATGTTTTCCA 57.493 42.857 10.93 0.00 0.00 3.53
585 649 4.704057 AGATTTCAGAGCTCCATGTTTTCC 59.296 41.667 10.93 0.00 0.00 3.13
617 681 1.992834 TTGCCATAGGTCGGGAGCA 60.993 57.895 0.32 0.00 0.00 4.26
624 688 1.084289 GTCGGTTGTTGCCATAGGTC 58.916 55.000 0.00 0.00 0.00 3.85
626 690 0.802494 GTGTCGGTTGTTGCCATAGG 59.198 55.000 0.00 0.00 0.00 2.57
639 703 2.370281 ACATAGCTGTGAAGTGTCGG 57.630 50.000 18.24 0.00 33.22 4.79
642 706 3.616560 CGGGTTACATAGCTGTGAAGTGT 60.617 47.826 18.24 4.91 36.79 3.55
791 855 0.176680 ATGCGTCGGCTTCTGAATCT 59.823 50.000 0.00 0.00 40.82 2.40
802 866 3.853330 CAGCGGTTGATGCGTCGG 61.853 66.667 0.58 0.00 37.44 4.79
815 879 3.811722 TTGTTTGTATTGAGAGCAGCG 57.188 42.857 0.00 0.00 0.00 5.18
1011 1107 2.363018 ACGGAGCAGAGCCAGCTA 60.363 61.111 0.00 0.00 43.58 3.32
1140 1239 4.320456 CCGTCCAGCACCTGCACT 62.320 66.667 0.00 0.00 45.16 4.40
1585 1688 3.197983 ACGGGGCAAATATATAGAGGAGC 59.802 47.826 0.00 0.00 0.00 4.70
1616 1722 1.034838 AGGCTGTAGCAGAGGAGACG 61.035 60.000 6.18 0.00 44.36 4.18
1640 1762 7.798801 ACAACATTTGCACATATTCAACATTG 58.201 30.769 0.00 0.00 0.00 2.82
1731 1856 3.444388 GGACGGAGACAGTAGTTCTGAAT 59.556 47.826 3.49 0.00 46.27 2.57
1741 1866 2.454336 TATGATGGGACGGAGACAGT 57.546 50.000 0.00 0.00 0.00 3.55
1747 1872 8.609617 AATAAGATCTTATATGATGGGACGGA 57.390 34.615 24.81 0.00 34.90 4.69
1777 1902 5.228945 ACTCTATCCGTCCCATAAATTGG 57.771 43.478 0.00 0.00 46.00 3.16
1877 3382 0.968405 TTCCAAAAGCATCCAGGTGC 59.032 50.000 0.00 0.00 45.38 5.01
1895 3400 2.335316 TAACGGAACAACCAGCAGTT 57.665 45.000 0.00 0.00 40.16 3.16
1904 3409 5.391097 CCACTATCGCAAAATAACGGAACAA 60.391 40.000 0.00 0.00 0.00 2.83
1918 3423 0.454600 GTCGAGGTTCCACTATCGCA 59.545 55.000 0.00 0.00 35.23 5.10
1961 3466 0.889306 AGTGAGAAGTACGAGGGTGC 59.111 55.000 0.00 0.00 0.00 5.01
1969 3492 7.148557 GCTCAATTTAGTTGGAGTGAGAAGTAC 60.149 40.741 5.15 0.00 38.39 2.73
2046 3569 6.811253 TGTATTACCTTGAGTTCGCATTTT 57.189 33.333 0.00 0.00 0.00 1.82
2340 3997 1.536709 CCGTCCGGGTTTATTAGGTCG 60.537 57.143 0.00 0.00 35.65 4.79
2354 4011 1.472728 CCTACATTTTCCCTCCGTCCG 60.473 57.143 0.00 0.00 0.00 4.79
2366 4023 8.766994 AATCCTATGCACAATTACCTACATTT 57.233 30.769 0.00 0.00 0.00 2.32
2416 4073 3.665871 GCGCAGATTCAAAGAACTTCAAC 59.334 43.478 0.30 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.