Multiple sequence alignment - TraesCS3B01G094800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G094800 chr3B 100.000 3088 0 0 1 3088 63400575 63397488 0.000000e+00 5703.0
1 TraesCS3B01G094800 chr3B 96.949 295 9 0 115 409 758620103 758619809 2.140000e-136 496.0
2 TraesCS3B01G094800 chr3B 92.808 292 19 2 116 406 444116928 444117218 3.680000e-114 422.0
3 TraesCS3B01G094800 chr3B 89.349 169 13 4 442 608 63408495 63408330 1.120000e-49 207.0
4 TraesCS3B01G094800 chr3B 96.610 118 4 0 1 118 758620359 758620242 2.430000e-46 196.0
5 TraesCS3B01G094800 chr3B 93.694 111 7 0 299 409 736740387 736740497 1.900000e-37 167.0
6 TraesCS3B01G094800 chr3B 90.991 111 8 2 1 111 736739988 736740096 6.900000e-32 148.0
7 TraesCS3B01G094800 chr3B 84.821 112 14 3 2398 2509 63397260 63397368 3.260000e-20 110.0
8 TraesCS3B01G094800 chr3D 90.386 1529 80 20 613 2085 39621809 39620292 0.000000e+00 1947.0
9 TraesCS3B01G094800 chr3D 86.211 805 82 17 2077 2873 976642 977425 0.000000e+00 845.0
10 TraesCS3B01G094800 chr3D 90.419 167 12 3 442 608 40007508 40007346 1.860000e-52 217.0
11 TraesCS3B01G094800 chr3A 91.689 1119 60 12 904 2018 51409108 51408019 0.000000e+00 1520.0
12 TraesCS3B01G094800 chr3A 93.197 147 9 1 444 590 51470039 51469894 6.710000e-52 215.0
13 TraesCS3B01G094800 chr3A 87.310 197 11 7 723 911 51410501 51410311 2.410000e-51 213.0
14 TraesCS3B01G094800 chr3A 95.833 96 1 1 631 723 51423931 51423836 5.330000e-33 152.0
15 TraesCS3B01G094800 chr1B 89.098 1009 79 14 2085 3085 205430497 205431482 0.000000e+00 1225.0
16 TraesCS3B01G094800 chr1B 82.588 425 58 13 2085 2507 205432047 205431637 8.140000e-96 361.0
17 TraesCS3B01G094800 chr1D 95.366 410 17 2 1 409 398366898 398366490 0.000000e+00 651.0
18 TraesCS3B01G094800 chr7B 80.130 921 133 31 1121 2019 434831467 434830575 2.600000e-180 641.0
19 TraesCS3B01G094800 chr7B 89.151 212 19 4 201 410 636434186 636434395 8.490000e-66 261.0
20 TraesCS3B01G094800 chrUn 94.146 410 23 1 1 409 109064704 109065113 9.400000e-175 623.0
21 TraesCS3B01G094800 chr7A 79.718 922 135 38 1121 2016 514702196 514703091 1.220000e-173 619.0
22 TraesCS3B01G094800 chr7A 83.137 255 36 4 2089 2343 728291562 728291315 3.100000e-55 226.0
23 TraesCS3B01G094800 chr7D 80.092 869 131 27 1169 2019 418948852 418948008 2.630000e-170 608.0
24 TraesCS3B01G094800 chr2B 89.051 411 17 7 1 411 774700528 774700910 4.630000e-133 484.0
25 TraesCS3B01G094800 chr6B 81.146 419 60 8 2086 2504 636380954 636381353 4.970000e-83 318.0
26 TraesCS3B01G094800 chr4B 89.100 211 19 4 201 409 167359567 167359359 3.050000e-65 259.0
27 TraesCS3B01G094800 chr4A 100.000 42 0 0 368 409 645675898 645675939 9.180000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G094800 chr3B 63397488 63400575 3087 True 5703.0 5703 100.0000 1 3088 1 chr3B.!!$R1 3087
1 TraesCS3B01G094800 chr3B 758619809 758620359 550 True 346.0 496 96.7795 1 409 2 chr3B.!!$R3 408
2 TraesCS3B01G094800 chr3D 39620292 39621809 1517 True 1947.0 1947 90.3860 613 2085 1 chr3D.!!$R1 1472
3 TraesCS3B01G094800 chr3D 976642 977425 783 False 845.0 845 86.2110 2077 2873 1 chr3D.!!$F1 796
4 TraesCS3B01G094800 chr3A 51408019 51410501 2482 True 866.5 1520 89.4995 723 2018 2 chr3A.!!$R3 1295
5 TraesCS3B01G094800 chr1B 205430497 205431482 985 False 1225.0 1225 89.0980 2085 3085 1 chr1B.!!$F1 1000
6 TraesCS3B01G094800 chr7B 434830575 434831467 892 True 641.0 641 80.1300 1121 2019 1 chr7B.!!$R1 898
7 TraesCS3B01G094800 chr7A 514702196 514703091 895 False 619.0 619 79.7180 1121 2016 1 chr7A.!!$F1 895
8 TraesCS3B01G094800 chr7D 418948008 418948852 844 True 608.0 608 80.0920 1169 2019 1 chr7D.!!$R1 850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 711 0.036732 AACTCGCCATTCTTGCTGGA 59.963 50.0 0.0 0.0 35.7 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2350 3789 0.864797 CGACTCCTAACTTACGGCGC 60.865 60.0 6.9 0.0 0.0 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 289 6.387465 CCATCCGTATCAACATATAAGACGT 58.613 40.000 0.00 0.00 0.00 4.34
228 371 1.132453 GAAACAGTATCCAAAGCGGGC 59.868 52.381 0.00 0.00 34.36 6.13
331 474 9.577110 TGATTTTTACCTTACTACATAGACACG 57.423 33.333 0.00 0.00 0.00 4.49
396 539 2.381911 CCCCCTCATGTCCAAATTCTG 58.618 52.381 0.00 0.00 0.00 3.02
427 570 2.882876 GCACAGCAAGGCCATCTG 59.117 61.111 5.01 11.46 0.00 2.90
428 571 1.975407 GCACAGCAAGGCCATCTGT 60.975 57.895 15.91 15.91 41.29 3.41
429 572 4.410225 ACAGCAAGGCCATCTGTG 57.590 55.556 19.46 7.08 39.36 3.66
430 573 1.763120 ACAGCAAGGCCATCTGTGA 59.237 52.632 19.46 0.00 39.36 3.58
431 574 0.111061 ACAGCAAGGCCATCTGTGAA 59.889 50.000 19.46 0.00 39.36 3.18
432 575 0.809385 CAGCAAGGCCATCTGTGAAG 59.191 55.000 5.01 0.00 0.00 3.02
433 576 0.964358 AGCAAGGCCATCTGTGAAGC 60.964 55.000 5.01 0.00 0.00 3.86
434 577 0.964358 GCAAGGCCATCTGTGAAGCT 60.964 55.000 5.01 0.00 0.00 3.74
435 578 0.809385 CAAGGCCATCTGTGAAGCTG 59.191 55.000 5.01 0.00 0.00 4.24
436 579 0.964358 AAGGCCATCTGTGAAGCTGC 60.964 55.000 5.01 0.00 0.00 5.25
437 580 1.378250 GGCCATCTGTGAAGCTGCT 60.378 57.895 0.00 0.00 0.00 4.24
438 581 0.964358 GGCCATCTGTGAAGCTGCTT 60.964 55.000 15.92 15.92 0.00 3.91
439 582 0.886563 GCCATCTGTGAAGCTGCTTT 59.113 50.000 17.10 0.00 0.00 3.51
440 583 1.271656 GCCATCTGTGAAGCTGCTTTT 59.728 47.619 17.10 0.00 0.00 2.27
441 584 2.925306 GCCATCTGTGAAGCTGCTTTTG 60.925 50.000 17.10 7.34 0.00 2.44
442 585 2.295349 CCATCTGTGAAGCTGCTTTTGT 59.705 45.455 17.10 0.00 0.00 2.83
443 586 3.503363 CCATCTGTGAAGCTGCTTTTGTA 59.497 43.478 17.10 2.36 0.00 2.41
444 587 4.157289 CCATCTGTGAAGCTGCTTTTGTAT 59.843 41.667 17.10 4.60 0.00 2.29
445 588 4.754372 TCTGTGAAGCTGCTTTTGTATG 57.246 40.909 17.10 5.68 0.00 2.39
446 589 4.136796 TCTGTGAAGCTGCTTTTGTATGT 58.863 39.130 17.10 0.00 0.00 2.29
447 590 5.304778 TCTGTGAAGCTGCTTTTGTATGTA 58.695 37.500 17.10 0.00 0.00 2.29
448 591 5.939883 TCTGTGAAGCTGCTTTTGTATGTAT 59.060 36.000 17.10 0.00 0.00 2.29
449 592 7.102993 TCTGTGAAGCTGCTTTTGTATGTATA 58.897 34.615 17.10 0.00 0.00 1.47
450 593 7.278646 TCTGTGAAGCTGCTTTTGTATGTATAG 59.721 37.037 17.10 4.37 0.00 1.31
451 594 6.183360 TGTGAAGCTGCTTTTGTATGTATAGC 60.183 38.462 17.10 0.00 0.00 2.97
452 595 5.879777 TGAAGCTGCTTTTGTATGTATAGCA 59.120 36.000 17.10 2.01 39.35 3.49
460 603 9.653287 TGCTTTTGTATGTATAGCAGGTATATC 57.347 33.333 2.65 0.00 36.96 1.63
461 604 9.653287 GCTTTTGTATGTATAGCAGGTATATCA 57.347 33.333 2.65 4.13 0.00 2.15
470 613 9.710900 TGTATAGCAGGTATATCATTGTCTTTG 57.289 33.333 2.65 0.00 0.00 2.77
471 614 7.678947 ATAGCAGGTATATCATTGTCTTTGC 57.321 36.000 0.00 0.00 0.00 3.68
472 615 4.823989 AGCAGGTATATCATTGTCTTTGCC 59.176 41.667 0.00 0.00 0.00 4.52
473 616 4.022849 GCAGGTATATCATTGTCTTTGCCC 60.023 45.833 0.00 0.00 0.00 5.36
474 617 5.380043 CAGGTATATCATTGTCTTTGCCCT 58.620 41.667 0.00 0.00 0.00 5.19
475 618 6.533730 CAGGTATATCATTGTCTTTGCCCTA 58.466 40.000 0.00 0.00 0.00 3.53
476 619 6.428159 CAGGTATATCATTGTCTTTGCCCTAC 59.572 42.308 0.00 0.00 0.00 3.18
477 620 6.101150 AGGTATATCATTGTCTTTGCCCTACA 59.899 38.462 0.00 0.00 0.00 2.74
478 621 6.942576 GGTATATCATTGTCTTTGCCCTACAT 59.057 38.462 0.00 0.00 0.00 2.29
479 622 7.448469 GGTATATCATTGTCTTTGCCCTACATT 59.552 37.037 0.00 0.00 0.00 2.71
480 623 7.902920 ATATCATTGTCTTTGCCCTACATTT 57.097 32.000 0.00 0.00 0.00 2.32
481 624 6.610075 ATCATTGTCTTTGCCCTACATTTT 57.390 33.333 0.00 0.00 0.00 1.82
482 625 6.024552 TCATTGTCTTTGCCCTACATTTTC 57.975 37.500 0.00 0.00 0.00 2.29
483 626 5.774690 TCATTGTCTTTGCCCTACATTTTCT 59.225 36.000 0.00 0.00 0.00 2.52
484 627 5.705609 TTGTCTTTGCCCTACATTTTCTC 57.294 39.130 0.00 0.00 0.00 2.87
485 628 4.079253 TGTCTTTGCCCTACATTTTCTCC 58.921 43.478 0.00 0.00 0.00 3.71
486 629 4.079253 GTCTTTGCCCTACATTTTCTCCA 58.921 43.478 0.00 0.00 0.00 3.86
487 630 4.522789 GTCTTTGCCCTACATTTTCTCCAA 59.477 41.667 0.00 0.00 0.00 3.53
488 631 5.185828 GTCTTTGCCCTACATTTTCTCCAAT 59.814 40.000 0.00 0.00 0.00 3.16
489 632 6.377146 GTCTTTGCCCTACATTTTCTCCAATA 59.623 38.462 0.00 0.00 0.00 1.90
490 633 6.951198 TCTTTGCCCTACATTTTCTCCAATAA 59.049 34.615 0.00 0.00 0.00 1.40
491 634 6.773976 TTGCCCTACATTTTCTCCAATAAG 57.226 37.500 0.00 0.00 0.00 1.73
492 635 6.073447 TGCCCTACATTTTCTCCAATAAGA 57.927 37.500 0.00 0.00 0.00 2.10
493 636 6.489603 TGCCCTACATTTTCTCCAATAAGAA 58.510 36.000 0.00 0.00 33.50 2.52
494 637 7.125391 TGCCCTACATTTTCTCCAATAAGAAT 58.875 34.615 0.00 0.00 35.30 2.40
495 638 8.278639 TGCCCTACATTTTCTCCAATAAGAATA 58.721 33.333 0.00 0.00 35.30 1.75
496 639 9.301897 GCCCTACATTTTCTCCAATAAGAATAT 57.698 33.333 0.00 0.00 35.30 1.28
528 671 8.845413 ACCTCTTTCATTGATCTATCATAAGC 57.155 34.615 0.00 0.00 36.56 3.09
529 672 8.658619 ACCTCTTTCATTGATCTATCATAAGCT 58.341 33.333 0.00 0.00 36.56 3.74
545 688 7.912056 TCATAAGCTAGGAATATGTCAATGC 57.088 36.000 0.00 0.00 0.00 3.56
546 689 7.683578 TCATAAGCTAGGAATATGTCAATGCT 58.316 34.615 0.00 0.00 0.00 3.79
547 690 7.605309 TCATAAGCTAGGAATATGTCAATGCTG 59.395 37.037 0.00 0.00 0.00 4.41
548 691 5.557576 AGCTAGGAATATGTCAATGCTGA 57.442 39.130 0.00 0.00 0.00 4.26
549 692 5.933617 AGCTAGGAATATGTCAATGCTGAA 58.066 37.500 0.00 0.00 31.88 3.02
550 693 6.359804 AGCTAGGAATATGTCAATGCTGAAA 58.640 36.000 0.00 0.00 31.88 2.69
551 694 6.261826 AGCTAGGAATATGTCAATGCTGAAAC 59.738 38.462 0.00 0.00 31.88 2.78
552 695 6.261826 GCTAGGAATATGTCAATGCTGAAACT 59.738 38.462 0.00 0.00 31.88 2.66
553 696 6.690194 AGGAATATGTCAATGCTGAAACTC 57.310 37.500 0.00 0.00 31.88 3.01
554 697 5.295292 AGGAATATGTCAATGCTGAAACTCG 59.705 40.000 0.00 0.00 31.88 4.18
555 698 2.907910 ATGTCAATGCTGAAACTCGC 57.092 45.000 0.00 0.00 31.88 5.03
556 699 0.874390 TGTCAATGCTGAAACTCGCC 59.126 50.000 0.00 0.00 31.88 5.54
557 700 0.874390 GTCAATGCTGAAACTCGCCA 59.126 50.000 0.00 0.00 31.88 5.69
558 701 1.470098 GTCAATGCTGAAACTCGCCAT 59.530 47.619 0.00 0.00 31.88 4.40
559 702 2.095059 GTCAATGCTGAAACTCGCCATT 60.095 45.455 0.00 0.00 31.88 3.16
560 703 2.162208 TCAATGCTGAAACTCGCCATTC 59.838 45.455 0.00 0.00 0.00 2.67
561 704 2.119801 ATGCTGAAACTCGCCATTCT 57.880 45.000 0.00 0.00 0.00 2.40
562 705 1.896220 TGCTGAAACTCGCCATTCTT 58.104 45.000 0.00 0.00 0.00 2.52
563 706 1.536766 TGCTGAAACTCGCCATTCTTG 59.463 47.619 0.00 0.00 0.00 3.02
564 707 1.730446 GCTGAAACTCGCCATTCTTGC 60.730 52.381 0.00 0.00 0.00 4.01
565 708 1.808945 CTGAAACTCGCCATTCTTGCT 59.191 47.619 0.00 0.00 0.00 3.91
566 709 1.536766 TGAAACTCGCCATTCTTGCTG 59.463 47.619 0.00 0.00 0.00 4.41
567 710 0.883833 AAACTCGCCATTCTTGCTGG 59.116 50.000 0.00 0.00 36.81 4.85
568 711 0.036732 AACTCGCCATTCTTGCTGGA 59.963 50.000 0.00 0.00 35.70 3.86
569 712 0.254178 ACTCGCCATTCTTGCTGGAT 59.746 50.000 0.00 0.00 35.70 3.41
570 713 1.486310 ACTCGCCATTCTTGCTGGATA 59.514 47.619 0.00 0.00 35.70 2.59
571 714 2.092968 ACTCGCCATTCTTGCTGGATAA 60.093 45.455 0.00 0.00 35.70 1.75
572 715 2.547211 CTCGCCATTCTTGCTGGATAAG 59.453 50.000 0.00 0.00 35.70 1.73
573 716 2.092968 TCGCCATTCTTGCTGGATAAGT 60.093 45.455 0.00 0.00 35.70 2.24
574 717 2.032550 CGCCATTCTTGCTGGATAAGTG 59.967 50.000 0.00 0.00 35.70 3.16
575 718 2.360165 GCCATTCTTGCTGGATAAGTGG 59.640 50.000 0.00 0.00 35.70 4.00
576 719 2.360165 CCATTCTTGCTGGATAAGTGGC 59.640 50.000 0.00 0.00 35.70 5.01
577 720 2.877097 TTCTTGCTGGATAAGTGGCA 57.123 45.000 0.00 0.00 0.00 4.92
578 721 3.370840 TTCTTGCTGGATAAGTGGCAT 57.629 42.857 0.00 0.00 34.59 4.40
579 722 2.923121 TCTTGCTGGATAAGTGGCATC 58.077 47.619 0.00 0.00 34.59 3.91
580 723 2.507058 TCTTGCTGGATAAGTGGCATCT 59.493 45.455 0.00 0.00 34.59 2.90
581 724 3.054139 TCTTGCTGGATAAGTGGCATCTT 60.054 43.478 0.00 0.00 34.59 2.40
582 725 2.923121 TGCTGGATAAGTGGCATCTTC 58.077 47.619 5.75 0.00 0.00 2.87
583 726 2.239402 TGCTGGATAAGTGGCATCTTCA 59.761 45.455 5.75 0.00 0.00 3.02
584 727 3.117776 TGCTGGATAAGTGGCATCTTCAT 60.118 43.478 5.75 0.85 0.00 2.57
585 728 3.887716 GCTGGATAAGTGGCATCTTCATT 59.112 43.478 5.75 0.00 0.00 2.57
586 729 5.065914 GCTGGATAAGTGGCATCTTCATTA 58.934 41.667 5.75 0.00 0.00 1.90
587 730 5.180868 GCTGGATAAGTGGCATCTTCATTAG 59.819 44.000 5.75 3.93 0.00 1.73
588 731 6.252599 TGGATAAGTGGCATCTTCATTAGT 57.747 37.500 5.75 0.00 0.00 2.24
589 732 7.373617 TGGATAAGTGGCATCTTCATTAGTA 57.626 36.000 5.75 0.00 0.00 1.82
590 733 7.445121 TGGATAAGTGGCATCTTCATTAGTAG 58.555 38.462 5.75 0.00 0.00 2.57
591 734 7.071196 TGGATAAGTGGCATCTTCATTAGTAGT 59.929 37.037 5.75 0.00 0.00 2.73
592 735 8.585881 GGATAAGTGGCATCTTCATTAGTAGTA 58.414 37.037 5.75 0.00 0.00 1.82
593 736 9.413048 GATAAGTGGCATCTTCATTAGTAGTAC 57.587 37.037 5.75 0.00 0.00 2.73
594 737 6.791867 AGTGGCATCTTCATTAGTAGTACA 57.208 37.500 2.52 0.00 0.00 2.90
595 738 7.366847 AGTGGCATCTTCATTAGTAGTACAT 57.633 36.000 2.52 0.00 0.00 2.29
596 739 7.796054 AGTGGCATCTTCATTAGTAGTACATT 58.204 34.615 2.52 0.00 0.00 2.71
597 740 7.712639 AGTGGCATCTTCATTAGTAGTACATTG 59.287 37.037 2.52 0.00 0.00 2.82
598 741 7.710907 GTGGCATCTTCATTAGTAGTACATTGA 59.289 37.037 2.52 0.00 0.00 2.57
599 742 8.264347 TGGCATCTTCATTAGTAGTACATTGAA 58.736 33.333 2.52 7.54 0.00 2.69
600 743 9.277783 GGCATCTTCATTAGTAGTACATTGAAT 57.722 33.333 2.52 0.00 0.00 2.57
681 824 6.414732 TGATTTCTCGTGGAATTCCTTGTAT 58.585 36.000 24.73 9.30 34.96 2.29
832 1013 0.835276 GGCCGGGTTCCACTAAGTAT 59.165 55.000 2.18 0.00 0.00 2.12
836 1017 2.696707 CCGGGTTCCACTAAGTATGCTA 59.303 50.000 0.00 0.00 0.00 3.49
838 1019 3.131577 CGGGTTCCACTAAGTATGCTACA 59.868 47.826 0.00 0.00 0.00 2.74
847 1028 8.052748 TCCACTAAGTATGCTACAAATCCATTT 58.947 33.333 0.00 0.00 0.00 2.32
848 1029 8.686334 CCACTAAGTATGCTACAAATCCATTTT 58.314 33.333 0.00 0.00 0.00 1.82
890 1073 6.253946 AGTTGCCAATACTAATCCTAGCTT 57.746 37.500 0.00 0.00 0.00 3.74
894 1083 6.994221 TGCCAATACTAATCCTAGCTTAGTC 58.006 40.000 15.36 6.00 39.50 2.59
940 2339 2.159572 ACGCATGCAGTAAAATTCGTCC 60.160 45.455 19.57 0.00 0.00 4.79
942 2341 3.487376 CGCATGCAGTAAAATTCGTCCAT 60.487 43.478 19.57 0.00 0.00 3.41
951 2350 6.001460 AGTAAAATTCGTCCATGTTTCCTCA 58.999 36.000 0.00 0.00 0.00 3.86
980 2380 1.374947 CCACACACCCCGTCATTCT 59.625 57.895 0.00 0.00 0.00 2.40
997 2397 5.622856 GTCATTCTTTTTCTCTGCTTTGTCG 59.377 40.000 0.00 0.00 0.00 4.35
1012 2412 2.036571 GTCGGCCTACAAAACCCCG 61.037 63.158 1.78 0.00 40.25 5.73
1058 2460 5.599242 TGTATCCGACTAATACCCAATCACA 59.401 40.000 0.00 0.00 0.00 3.58
1067 2469 5.664294 AATACCCAATCACACACGTACTA 57.336 39.130 0.00 0.00 0.00 1.82
1068 2470 3.308438 ACCCAATCACACACGTACTAC 57.692 47.619 0.00 0.00 0.00 2.73
1069 2471 2.895404 ACCCAATCACACACGTACTACT 59.105 45.455 0.00 0.00 0.00 2.57
1070 2472 3.322828 ACCCAATCACACACGTACTACTT 59.677 43.478 0.00 0.00 0.00 2.24
1071 2473 4.523943 ACCCAATCACACACGTACTACTTA 59.476 41.667 0.00 0.00 0.00 2.24
1072 2474 4.860907 CCCAATCACACACGTACTACTTAC 59.139 45.833 0.00 0.00 0.00 2.34
1082 2484 8.900781 ACACACGTACTACTTACTATCAATCAT 58.099 33.333 0.00 0.00 0.00 2.45
1084 2486 8.281194 ACACGTACTACTTACTATCAATCATCG 58.719 37.037 0.00 0.00 0.00 3.84
1470 2889 1.174783 GTGCTTCTCCTCGACAGGTA 58.825 55.000 0.00 0.00 41.28 3.08
1602 3024 2.125326 CATACGAGCCGGAGTCCCA 61.125 63.158 5.05 0.00 0.00 4.37
1813 3244 2.664851 TTCTTCGCCGCCACAGTG 60.665 61.111 0.00 0.00 0.00 3.66
1869 3300 0.538057 ACGGTGGACAGGTTAGACGA 60.538 55.000 0.00 0.00 0.00 4.20
2061 3499 3.654414 GCTATTGCAGCCGTCTACTATT 58.346 45.455 0.00 0.00 45.23 1.73
2072 3510 4.369182 CCGTCTACTATTTCCAAATCGCT 58.631 43.478 0.00 0.00 0.00 4.93
2087 3525 7.877003 TCCAAATCGCTATGTTTTTAGTTGAA 58.123 30.769 0.00 0.00 0.00 2.69
2108 3546 7.624360 TGAAATAAATACACTCATGGTCACC 57.376 36.000 0.00 0.00 0.00 4.02
2119 3557 1.001974 CATGGTCACCGAAGTTGAGGA 59.998 52.381 0.00 0.00 0.00 3.71
2132 3570 4.357918 AGTTGAGGACAAAGCACACTAT 57.642 40.909 0.00 0.00 37.77 2.12
2135 3573 1.740025 GAGGACAAAGCACACTATGGC 59.260 52.381 0.00 0.00 0.00 4.40
2155 3593 4.822896 TGGCCACTGAACTTTAAAATACGT 59.177 37.500 0.00 0.00 0.00 3.57
2156 3594 5.049267 TGGCCACTGAACTTTAAAATACGTC 60.049 40.000 0.00 0.00 0.00 4.34
2163 3601 9.275398 ACTGAACTTTAAAATACGTCCAATACA 57.725 29.630 0.00 0.00 0.00 2.29
2202 3640 6.484643 AGTTGTGATGATTATATGGTCACTGC 59.515 38.462 0.00 0.00 39.78 4.40
2207 3645 5.122707 TGATTATATGGTCACTGCCCAAA 57.877 39.130 0.00 0.00 35.14 3.28
2208 3646 5.704354 TGATTATATGGTCACTGCCCAAAT 58.296 37.500 0.00 0.00 35.14 2.32
2209 3647 6.846988 TGATTATATGGTCACTGCCCAAATA 58.153 36.000 0.00 0.00 35.14 1.40
2213 3651 4.584638 ATGGTCACTGCCCAAATAGTAA 57.415 40.909 0.00 0.00 35.14 2.24
2227 3665 8.676401 GCCCAAATAGTAAACTTCCGTATTTTA 58.324 33.333 0.00 0.00 0.00 1.52
2243 3682 2.373540 TTTATCTGGTTGACCGGTCG 57.626 50.000 28.70 14.65 43.01 4.79
2253 3692 2.989824 ACCGGTCGACAGGTCTGG 60.990 66.667 31.28 14.81 40.42 3.86
2272 3711 1.754226 GGGTGGCAAACTTTGACTGAA 59.246 47.619 8.84 0.00 40.19 3.02
2281 3720 1.873591 ACTTTGACTGAATGGTCACGC 59.126 47.619 0.00 0.00 44.55 5.34
2282 3721 2.146342 CTTTGACTGAATGGTCACGCT 58.854 47.619 0.00 0.00 44.55 5.07
2317 3756 3.485214 TGGGTCCCACATGTCAGTA 57.515 52.632 6.47 0.00 0.00 2.74
2338 3777 6.797033 CAGTAAGGCAGACGAAACAAATAAAG 59.203 38.462 0.00 0.00 0.00 1.85
2372 3811 2.524034 GCCGTAAGTTAGGAGTCGAAC 58.476 52.381 4.15 0.00 0.00 3.95
2374 3813 2.159324 CCGTAAGTTAGGAGTCGAACCC 60.159 54.545 4.15 1.62 0.00 4.11
2423 3862 1.362406 GCTCTAACAACCTCGCCTGC 61.362 60.000 0.00 0.00 0.00 4.85
2440 3879 1.131218 GCCGCCGTTCTACGTTTTC 59.869 57.895 0.00 0.00 40.58 2.29
2441 3880 1.559149 GCCGCCGTTCTACGTTTTCA 61.559 55.000 0.00 0.00 40.58 2.69
2459 3898 6.512578 CGTTTTCATTGGAGTTGTCACACATA 60.513 38.462 0.00 0.00 0.00 2.29
2556 3995 3.452357 CGTAGCTGTGTGAGTGCG 58.548 61.111 0.00 0.00 0.00 5.34
2566 4005 1.200839 GTGAGTGCGTGCGTGTTAC 59.799 57.895 0.00 0.00 0.00 2.50
2572 4011 1.084935 TGCGTGCGTGTTACTGTGTT 61.085 50.000 0.00 0.00 0.00 3.32
2573 4012 0.854062 GCGTGCGTGTTACTGTGTTA 59.146 50.000 0.00 0.00 0.00 2.41
2575 4014 2.121786 CGTGCGTGTTACTGTGTTAGT 58.878 47.619 0.00 0.00 43.56 2.24
2576 4015 2.097589 CGTGCGTGTTACTGTGTTAGTG 60.098 50.000 0.00 0.00 40.65 2.74
2897 4343 6.599638 AGTCCCGGATTTCAAAAGAGATTTAG 59.400 38.462 0.73 0.00 0.00 1.85
2902 4348 9.860898 CCGGATTTCAAAAGAGATTTAGAATTT 57.139 29.630 0.00 0.00 0.00 1.82
3005 4451 7.417496 AAAACAGTTGAAGAATAGTACGACC 57.583 36.000 0.00 0.00 0.00 4.79
3068 4514 8.709272 AGGAGTAAAATATAGTACTGGGTCTC 57.291 38.462 5.39 3.05 30.65 3.36
3085 4531 4.142966 GGGTCTCGAAATTAACCGAAGTTG 60.143 45.833 0.00 0.00 36.68 3.16
3086 4532 4.687483 GGTCTCGAAATTAACCGAAGTTGA 59.313 41.667 0.00 0.00 36.68 3.18
3087 4533 5.389202 GGTCTCGAAATTAACCGAAGTTGAC 60.389 44.000 0.00 0.00 36.68 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.892609 ACGAGTTGATACTATATGTATTGCCA 58.107 34.615 0.00 0.00 41.55 4.92
71 72 3.996032 GCTATGAAGCTCAACAAACGAG 58.004 45.455 0.00 0.00 45.85 4.18
146 289 4.746535 TCAGACTTTGTGGACACTACAA 57.253 40.909 3.91 0.00 36.34 2.41
228 371 7.615582 TCTCTTTGTTTCATGTTAGGCATAG 57.384 36.000 0.00 0.00 35.74 2.23
311 454 6.513806 TTGCGTGTCTATGTAGTAAGGTAA 57.486 37.500 0.00 0.00 0.00 2.85
319 462 9.358872 ACATATGATATTTGCGTGTCTATGTAG 57.641 33.333 10.38 0.00 0.00 2.74
326 469 6.948353 AGAACACATATGATATTTGCGTGTC 58.052 36.000 10.38 2.85 35.20 3.67
410 553 1.975407 ACAGATGGCCTTGCTGTGC 60.975 57.895 20.00 0.00 41.02 4.57
411 554 4.410225 ACAGATGGCCTTGCTGTG 57.590 55.556 20.00 7.58 41.02 3.66
412 555 0.111061 TTCACAGATGGCCTTGCTGT 59.889 50.000 16.55 16.55 43.16 4.40
413 556 0.809385 CTTCACAGATGGCCTTGCTG 59.191 55.000 3.32 11.31 35.81 4.41
414 557 0.964358 GCTTCACAGATGGCCTTGCT 60.964 55.000 3.32 0.00 0.00 3.91
415 558 0.964358 AGCTTCACAGATGGCCTTGC 60.964 55.000 3.32 0.00 0.00 4.01
416 559 0.809385 CAGCTTCACAGATGGCCTTG 59.191 55.000 3.32 2.27 32.31 3.61
417 560 0.964358 GCAGCTTCACAGATGGCCTT 60.964 55.000 3.32 0.00 36.88 4.35
418 561 1.378250 GCAGCTTCACAGATGGCCT 60.378 57.895 3.32 0.00 36.88 5.19
419 562 0.964358 AAGCAGCTTCACAGATGGCC 60.964 55.000 0.21 0.00 36.88 5.36
420 563 0.886563 AAAGCAGCTTCACAGATGGC 59.113 50.000 8.48 0.00 36.88 4.40
421 564 2.295349 ACAAAAGCAGCTTCACAGATGG 59.705 45.455 8.48 0.00 36.88 3.51
422 565 3.637998 ACAAAAGCAGCTTCACAGATG 57.362 42.857 8.48 4.11 39.64 2.90
423 566 4.763793 ACATACAAAAGCAGCTTCACAGAT 59.236 37.500 8.48 0.00 0.00 2.90
424 567 4.136796 ACATACAAAAGCAGCTTCACAGA 58.863 39.130 8.48 0.00 0.00 3.41
425 568 4.494350 ACATACAAAAGCAGCTTCACAG 57.506 40.909 8.48 1.45 0.00 3.66
426 569 6.183360 GCTATACATACAAAAGCAGCTTCACA 60.183 38.462 8.48 0.00 33.38 3.58
427 570 6.183360 TGCTATACATACAAAAGCAGCTTCAC 60.183 38.462 8.48 0.00 38.22 3.18
428 571 5.879777 TGCTATACATACAAAAGCAGCTTCA 59.120 36.000 8.48 0.00 38.22 3.02
429 572 6.363577 TGCTATACATACAAAAGCAGCTTC 57.636 37.500 8.48 0.00 38.22 3.86
434 577 9.653287 GATATACCTGCTATACATACAAAAGCA 57.347 33.333 0.00 0.00 40.68 3.91
435 578 9.653287 TGATATACCTGCTATACATACAAAAGC 57.347 33.333 0.00 0.00 0.00 3.51
444 587 9.710900 CAAAGACAATGATATACCTGCTATACA 57.289 33.333 0.00 0.00 0.00 2.29
445 588 8.660373 GCAAAGACAATGATATACCTGCTATAC 58.340 37.037 0.00 0.00 0.00 1.47
446 589 7.824289 GGCAAAGACAATGATATACCTGCTATA 59.176 37.037 0.00 0.00 0.00 1.31
447 590 6.656693 GGCAAAGACAATGATATACCTGCTAT 59.343 38.462 0.00 0.00 0.00 2.97
448 591 5.997746 GGCAAAGACAATGATATACCTGCTA 59.002 40.000 0.00 0.00 0.00 3.49
449 592 4.823989 GGCAAAGACAATGATATACCTGCT 59.176 41.667 0.00 0.00 0.00 4.24
450 593 4.022849 GGGCAAAGACAATGATATACCTGC 60.023 45.833 0.00 0.00 0.00 4.85
451 594 5.380043 AGGGCAAAGACAATGATATACCTG 58.620 41.667 0.00 0.00 0.00 4.00
452 595 5.653255 AGGGCAAAGACAATGATATACCT 57.347 39.130 0.00 0.00 0.00 3.08
453 596 6.296026 TGTAGGGCAAAGACAATGATATACC 58.704 40.000 0.00 0.00 0.00 2.73
454 597 7.986085 ATGTAGGGCAAAGACAATGATATAC 57.014 36.000 0.00 0.00 0.00 1.47
455 598 8.995027 AAATGTAGGGCAAAGACAATGATATA 57.005 30.769 0.00 0.00 0.00 0.86
456 599 7.902920 AAATGTAGGGCAAAGACAATGATAT 57.097 32.000 0.00 0.00 0.00 1.63
457 600 7.615365 AGAAAATGTAGGGCAAAGACAATGATA 59.385 33.333 0.00 0.00 0.00 2.15
458 601 6.438425 AGAAAATGTAGGGCAAAGACAATGAT 59.562 34.615 0.00 0.00 0.00 2.45
459 602 5.774690 AGAAAATGTAGGGCAAAGACAATGA 59.225 36.000 0.00 0.00 0.00 2.57
460 603 6.029346 AGAAAATGTAGGGCAAAGACAATG 57.971 37.500 0.00 0.00 0.00 2.82
461 604 5.185828 GGAGAAAATGTAGGGCAAAGACAAT 59.814 40.000 0.00 0.00 0.00 2.71
462 605 4.522789 GGAGAAAATGTAGGGCAAAGACAA 59.477 41.667 0.00 0.00 0.00 3.18
463 606 4.079253 GGAGAAAATGTAGGGCAAAGACA 58.921 43.478 0.00 0.00 0.00 3.41
464 607 4.079253 TGGAGAAAATGTAGGGCAAAGAC 58.921 43.478 0.00 0.00 0.00 3.01
465 608 4.380843 TGGAGAAAATGTAGGGCAAAGA 57.619 40.909 0.00 0.00 0.00 2.52
466 609 5.665916 ATTGGAGAAAATGTAGGGCAAAG 57.334 39.130 0.00 0.00 0.00 2.77
467 610 6.951198 TCTTATTGGAGAAAATGTAGGGCAAA 59.049 34.615 0.00 0.00 0.00 3.68
468 611 6.489603 TCTTATTGGAGAAAATGTAGGGCAA 58.510 36.000 0.00 0.00 0.00 4.52
469 612 6.073447 TCTTATTGGAGAAAATGTAGGGCA 57.927 37.500 0.00 0.00 0.00 5.36
470 613 7.588497 ATTCTTATTGGAGAAAATGTAGGGC 57.412 36.000 0.00 0.00 38.98 5.19
502 645 9.282569 GCTTATGATAGATCAATGAAAGAGGTT 57.717 33.333 0.00 0.00 40.69 3.50
503 646 8.658619 AGCTTATGATAGATCAATGAAAGAGGT 58.341 33.333 0.00 0.00 40.69 3.85
519 662 9.605275 GCATTGACATATTCCTAGCTTATGATA 57.395 33.333 8.93 0.00 0.00 2.15
520 663 8.327271 AGCATTGACATATTCCTAGCTTATGAT 58.673 33.333 8.93 0.00 0.00 2.45
521 664 7.605309 CAGCATTGACATATTCCTAGCTTATGA 59.395 37.037 8.93 0.00 0.00 2.15
522 665 7.605309 TCAGCATTGACATATTCCTAGCTTATG 59.395 37.037 0.00 0.00 0.00 1.90
523 666 7.683578 TCAGCATTGACATATTCCTAGCTTAT 58.316 34.615 0.00 0.00 0.00 1.73
524 667 7.066307 TCAGCATTGACATATTCCTAGCTTA 57.934 36.000 0.00 0.00 0.00 3.09
525 668 5.933617 TCAGCATTGACATATTCCTAGCTT 58.066 37.500 0.00 0.00 0.00 3.74
526 669 5.557576 TCAGCATTGACATATTCCTAGCT 57.442 39.130 0.00 0.00 0.00 3.32
527 670 6.261826 AGTTTCAGCATTGACATATTCCTAGC 59.738 38.462 0.00 0.00 31.71 3.42
528 671 7.307042 CGAGTTTCAGCATTGACATATTCCTAG 60.307 40.741 0.00 0.00 31.71 3.02
529 672 6.479990 CGAGTTTCAGCATTGACATATTCCTA 59.520 38.462 0.00 0.00 31.71 2.94
530 673 5.295292 CGAGTTTCAGCATTGACATATTCCT 59.705 40.000 0.00 0.00 31.71 3.36
531 674 5.505286 CGAGTTTCAGCATTGACATATTCC 58.495 41.667 0.00 0.00 31.71 3.01
532 675 4.966366 GCGAGTTTCAGCATTGACATATTC 59.034 41.667 0.00 0.00 31.71 1.75
533 676 4.201950 GGCGAGTTTCAGCATTGACATATT 60.202 41.667 0.00 0.00 31.71 1.28
534 677 3.313526 GGCGAGTTTCAGCATTGACATAT 59.686 43.478 0.00 0.00 31.71 1.78
535 678 2.677836 GGCGAGTTTCAGCATTGACATA 59.322 45.455 0.00 0.00 31.71 2.29
536 679 1.470098 GGCGAGTTTCAGCATTGACAT 59.530 47.619 0.00 0.00 31.71 3.06
537 680 0.874390 GGCGAGTTTCAGCATTGACA 59.126 50.000 0.00 0.00 31.71 3.58
538 681 0.874390 TGGCGAGTTTCAGCATTGAC 59.126 50.000 0.00 0.00 31.71 3.18
539 682 1.825090 ATGGCGAGTTTCAGCATTGA 58.175 45.000 0.00 0.00 34.54 2.57
540 683 2.163010 AGAATGGCGAGTTTCAGCATTG 59.837 45.455 0.00 0.00 34.54 2.82
541 684 2.440409 AGAATGGCGAGTTTCAGCATT 58.560 42.857 0.00 0.00 34.54 3.56
542 685 2.119801 AGAATGGCGAGTTTCAGCAT 57.880 45.000 0.00 0.00 34.54 3.79
543 686 1.536766 CAAGAATGGCGAGTTTCAGCA 59.463 47.619 0.00 0.00 34.54 4.41
544 687 1.730446 GCAAGAATGGCGAGTTTCAGC 60.730 52.381 0.00 0.00 0.00 4.26
545 688 1.808945 AGCAAGAATGGCGAGTTTCAG 59.191 47.619 0.00 0.00 42.81 3.02
546 689 1.536766 CAGCAAGAATGGCGAGTTTCA 59.463 47.619 0.00 0.00 42.81 2.69
547 690 1.135575 CCAGCAAGAATGGCGAGTTTC 60.136 52.381 0.00 0.00 42.81 2.78
548 691 0.883833 CCAGCAAGAATGGCGAGTTT 59.116 50.000 0.00 0.00 42.81 2.66
549 692 0.036732 TCCAGCAAGAATGGCGAGTT 59.963 50.000 0.00 0.00 42.81 3.01
550 693 0.254178 ATCCAGCAAGAATGGCGAGT 59.746 50.000 0.00 0.00 42.81 4.18
551 694 2.245159 TATCCAGCAAGAATGGCGAG 57.755 50.000 0.00 0.00 42.81 5.03
552 695 2.092968 ACTTATCCAGCAAGAATGGCGA 60.093 45.455 0.00 0.00 42.81 5.54
553 696 2.032550 CACTTATCCAGCAAGAATGGCG 59.967 50.000 0.00 0.00 42.81 5.69
554 697 2.360165 CCACTTATCCAGCAAGAATGGC 59.640 50.000 0.00 0.00 37.76 4.40
555 698 2.360165 GCCACTTATCCAGCAAGAATGG 59.640 50.000 0.00 0.00 39.33 3.16
556 699 3.018856 TGCCACTTATCCAGCAAGAATG 58.981 45.455 0.00 0.00 30.97 2.67
557 700 3.370840 TGCCACTTATCCAGCAAGAAT 57.629 42.857 0.00 0.00 30.97 2.40
558 701 2.877097 TGCCACTTATCCAGCAAGAA 57.123 45.000 0.00 0.00 30.97 2.52
559 702 2.507058 AGATGCCACTTATCCAGCAAGA 59.493 45.455 0.00 0.00 38.99 3.02
560 703 2.928334 AGATGCCACTTATCCAGCAAG 58.072 47.619 0.00 0.00 38.99 4.01
561 704 3.282021 GAAGATGCCACTTATCCAGCAA 58.718 45.455 0.00 0.00 38.99 3.91
562 705 2.239402 TGAAGATGCCACTTATCCAGCA 59.761 45.455 0.00 0.00 40.00 4.41
563 706 2.923121 TGAAGATGCCACTTATCCAGC 58.077 47.619 0.00 0.00 0.00 4.85
564 707 6.294473 ACTAATGAAGATGCCACTTATCCAG 58.706 40.000 0.00 0.00 0.00 3.86
565 708 6.252599 ACTAATGAAGATGCCACTTATCCA 57.747 37.500 0.00 0.00 0.00 3.41
566 709 7.445945 ACTACTAATGAAGATGCCACTTATCC 58.554 38.462 0.00 0.00 0.00 2.59
567 710 9.413048 GTACTACTAATGAAGATGCCACTTATC 57.587 37.037 0.00 0.00 0.00 1.75
568 711 8.924303 TGTACTACTAATGAAGATGCCACTTAT 58.076 33.333 0.00 0.00 0.00 1.73
569 712 8.301252 TGTACTACTAATGAAGATGCCACTTA 57.699 34.615 0.00 0.00 0.00 2.24
570 713 7.182817 TGTACTACTAATGAAGATGCCACTT 57.817 36.000 0.00 0.00 0.00 3.16
571 714 6.791867 TGTACTACTAATGAAGATGCCACT 57.208 37.500 0.00 0.00 0.00 4.00
572 715 7.710907 TCAATGTACTACTAATGAAGATGCCAC 59.289 37.037 0.00 0.00 0.00 5.01
573 716 7.791029 TCAATGTACTACTAATGAAGATGCCA 58.209 34.615 0.00 0.00 0.00 4.92
574 717 8.662781 TTCAATGTACTACTAATGAAGATGCC 57.337 34.615 0.00 0.00 0.00 4.40
603 746 2.991190 ACGTCGGTGTCATGTATTTGAC 59.009 45.455 0.00 0.00 45.05 3.18
604 747 2.990514 CACGTCGGTGTCATGTATTTGA 59.009 45.455 0.00 0.00 39.38 2.69
605 748 2.473868 GCACGTCGGTGTCATGTATTTG 60.474 50.000 0.00 0.00 46.13 2.32
606 749 1.730064 GCACGTCGGTGTCATGTATTT 59.270 47.619 0.00 0.00 46.13 1.40
607 750 1.067142 AGCACGTCGGTGTCATGTATT 60.067 47.619 0.00 0.00 46.13 1.89
608 751 0.530744 AGCACGTCGGTGTCATGTAT 59.469 50.000 0.00 0.00 46.13 2.29
609 752 0.109458 GAGCACGTCGGTGTCATGTA 60.109 55.000 0.00 0.00 46.13 2.29
610 753 1.372997 GAGCACGTCGGTGTCATGT 60.373 57.895 0.00 0.00 46.13 3.21
611 754 2.094659 GGAGCACGTCGGTGTCATG 61.095 63.158 0.00 0.00 46.13 3.07
681 824 4.699925 ACTAGTGGCCTTTGTTTCTACA 57.300 40.909 3.32 0.00 0.00 2.74
718 868 6.937436 ACAAGATTAGTTGGTTCGTTCTTT 57.063 33.333 0.00 0.00 0.00 2.52
790 971 1.557099 TGCTGGAAGTCGTATGGAGT 58.443 50.000 0.00 0.00 35.30 3.85
791 972 2.363680 AGATGCTGGAAGTCGTATGGAG 59.636 50.000 0.00 0.00 35.30 3.86
873 1054 6.804295 CGCAGACTAAGCTAGGATTAGTATTG 59.196 42.308 7.96 10.16 42.17 1.90
875 1058 5.416326 CCGCAGACTAAGCTAGGATTAGTAT 59.584 44.000 7.96 3.16 42.17 2.12
890 1073 1.001633 GGACTGAAAACCCGCAGACTA 59.998 52.381 0.00 0.00 36.07 2.59
894 1083 0.817634 TGTGGACTGAAAACCCGCAG 60.818 55.000 0.00 0.00 35.75 5.18
940 2339 4.549458 GTCAAACATGGTGAGGAAACATG 58.451 43.478 1.88 1.88 45.56 3.21
942 2341 2.955660 GGTCAAACATGGTGAGGAAACA 59.044 45.455 0.00 0.00 0.00 2.83
951 2350 1.398692 GGTGTGTGGTCAAACATGGT 58.601 50.000 0.00 0.00 33.71 3.55
980 2380 1.336755 GGCCGACAAAGCAGAGAAAAA 59.663 47.619 0.00 0.00 0.00 1.94
997 2397 3.066190 GGCGGGGTTTTGTAGGCC 61.066 66.667 0.00 0.00 0.00 5.19
1012 2412 1.732259 ACATTTGTCACGAGATTCGGC 59.268 47.619 3.37 0.00 45.59 5.54
1058 2460 8.281194 CGATGATTGATAGTAAGTAGTACGTGT 58.719 37.037 0.00 0.00 37.81 4.49
1067 2469 8.116651 AGCTATGTCGATGATTGATAGTAAGT 57.883 34.615 0.00 0.00 0.00 2.24
1071 2473 7.978414 CCATTAGCTATGTCGATGATTGATAGT 59.022 37.037 0.00 0.00 31.99 2.12
1072 2474 7.042858 GCCATTAGCTATGTCGATGATTGATAG 60.043 40.741 0.00 0.00 38.99 2.08
1082 2484 1.954382 AGACGCCATTAGCTATGTCGA 59.046 47.619 11.62 0.00 37.81 4.20
1084 2486 3.983741 AGAAGACGCCATTAGCTATGTC 58.016 45.455 0.00 0.00 40.39 3.06
1174 2593 2.697761 GCTGTAGGACTCGACGCCA 61.698 63.158 1.99 0.00 0.00 5.69
1304 2723 2.444624 CCTCGGACACGTTGATGCG 61.445 63.158 0.00 0.00 41.85 4.73
1585 3007 1.828660 CTGGGACTCCGGCTCGTAT 60.829 63.158 0.00 0.00 35.24 3.06
1813 3244 2.956964 CCGAGGAAGACATCGCGC 60.957 66.667 0.00 0.00 46.64 6.86
1991 3422 3.010413 GCTTGGGTTCCATGCTGCC 62.010 63.158 14.92 0.00 46.74 4.85
2044 3482 2.235155 TGGAAATAGTAGACGGCTGCAA 59.765 45.455 9.71 0.00 0.00 4.08
2061 3499 7.877003 TCAACTAAAAACATAGCGATTTGGAA 58.123 30.769 0.00 0.00 0.00 3.53
2087 3525 5.984725 TCGGTGACCATGAGTGTATTTATT 58.015 37.500 1.11 0.00 0.00 1.40
2108 3546 1.939934 TGTGCTTTGTCCTCAACTTCG 59.060 47.619 0.00 0.00 32.93 3.79
2119 3557 1.202927 AGTGGCCATAGTGTGCTTTGT 60.203 47.619 9.72 0.00 0.00 2.83
2132 3570 4.822896 ACGTATTTTAAAGTTCAGTGGCCA 59.177 37.500 0.00 0.00 0.00 5.36
2135 3573 6.548441 TGGACGTATTTTAAAGTTCAGTGG 57.452 37.500 0.00 0.00 0.00 4.00
2155 3593 6.873997 ACTCGTATTCAATGACTGTATTGGA 58.126 36.000 0.00 0.00 38.33 3.53
2156 3594 7.064609 ACAACTCGTATTCAATGACTGTATTGG 59.935 37.037 0.00 0.00 38.33 3.16
2163 3601 6.398095 TCATCACAACTCGTATTCAATGACT 58.602 36.000 0.00 0.00 0.00 3.41
2193 3631 4.076394 GTTTACTATTTGGGCAGTGACCA 58.924 43.478 15.83 15.83 40.08 4.02
2209 3647 8.943002 CAACCAGATAAAATACGGAAGTTTACT 58.057 33.333 0.00 0.00 46.40 2.24
2213 3651 6.373495 GGTCAACCAGATAAAATACGGAAGTT 59.627 38.462 0.00 0.00 39.99 2.66
2227 3665 1.183030 TGTCGACCGGTCAACCAGAT 61.183 55.000 32.80 0.00 35.14 2.90
2243 3682 1.150536 TTTGCCACCCAGACCTGTC 59.849 57.895 0.00 0.00 0.00 3.51
2253 3692 3.383761 CATTCAGTCAAAGTTTGCCACC 58.616 45.455 10.90 0.00 0.00 4.61
2272 3711 1.064758 AGAGAGAGAGAGCGTGACCAT 60.065 52.381 0.00 0.00 0.00 3.55
2281 3720 2.285083 CCACGTGGTAGAGAGAGAGAG 58.715 57.143 26.95 0.00 0.00 3.20
2282 3721 1.065345 CCCACGTGGTAGAGAGAGAGA 60.065 57.143 31.80 0.00 0.00 3.10
2317 3756 4.037446 TGCTTTATTTGTTTCGTCTGCCTT 59.963 37.500 0.00 0.00 0.00 4.35
2350 3789 0.864797 CGACTCCTAACTTACGGCGC 60.865 60.000 6.90 0.00 0.00 6.53
2440 3879 8.275632 CGTATAATATGTGTGACAACTCCAATG 58.724 37.037 0.00 0.00 0.00 2.82
2441 3880 7.985184 ACGTATAATATGTGTGACAACTCCAAT 59.015 33.333 0.00 0.00 0.00 3.16
2518 3957 7.700656 GCTACGCAGAACAAATAACCATAAAAT 59.299 33.333 0.00 0.00 0.00 1.82
2556 3995 2.861935 ACACTAACACAGTAACACGCAC 59.138 45.455 0.00 0.00 34.98 5.34
2566 4005 7.253618 GCACAAATAAAACACACACTAACACAG 60.254 37.037 0.00 0.00 0.00 3.66
2572 4011 4.335874 ACGGCACAAATAAAACACACACTA 59.664 37.500 0.00 0.00 0.00 2.74
2573 4012 3.129638 ACGGCACAAATAAAACACACACT 59.870 39.130 0.00 0.00 0.00 3.55
2575 4014 3.378742 AGACGGCACAAATAAAACACACA 59.621 39.130 0.00 0.00 0.00 3.72
2576 4015 3.728718 CAGACGGCACAAATAAAACACAC 59.271 43.478 0.00 0.00 0.00 3.82
2655 4095 9.712305 TTTTTGGAGTAGTTTTGAAAATTCACA 57.288 25.926 0.00 0.00 36.83 3.58
2704 4144 3.256136 TGCAATTCATGTGCATGTCTTCA 59.744 39.130 11.38 3.47 46.76 3.02
2924 4370 9.439537 GTTTTGTTGTTTTGCTTTCTTGTTTTA 57.560 25.926 0.00 0.00 0.00 1.52
2937 4383 9.662545 ATTTTGTCTTTCAGTTTTGTTGTTTTG 57.337 25.926 0.00 0.00 0.00 2.44
2981 4427 7.170998 CAGGTCGTACTATTCTTCAACTGTTTT 59.829 37.037 0.00 0.00 0.00 2.43
2985 4431 5.950883 TCAGGTCGTACTATTCTTCAACTG 58.049 41.667 0.00 0.00 0.00 3.16
2986 4432 6.585695 TTCAGGTCGTACTATTCTTCAACT 57.414 37.500 0.00 0.00 0.00 3.16
3005 4451 3.181526 GCTCGCACAGATACAACTTTCAG 60.182 47.826 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.