Multiple sequence alignment - TraesCS3B01G093900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G093900 chr3B 100.000 4795 0 0 1834 6628 62952643 62947849 0.000000e+00 8855
1 TraesCS3B01G093900 chr3B 100.000 1301 0 0 1 1301 62954476 62953176 0.000000e+00 2403
2 TraesCS3B01G093900 chr3D 92.585 3520 167 40 3154 6628 39392479 39389009 0.000000e+00 4968
3 TraesCS3B01G093900 chr3D 92.691 602 44 0 2599 3200 39393070 39392469 0.000000e+00 869
4 TraesCS3B01G093900 chr3D 84.734 845 45 31 502 1301 39394584 39393779 0.000000e+00 769
5 TraesCS3B01G093900 chr3D 90.335 507 26 4 1 495 39395135 39394640 1.560000e-180 643
6 TraesCS3B01G093900 chr3D 83.768 499 39 25 1837 2302 39393749 39393260 1.020000e-117 435
7 TraesCS3B01G093900 chr3D 90.106 283 14 6 2336 2605 39393271 39392990 8.170000e-94 355
8 TraesCS3B01G093900 chr3A 92.308 2327 144 10 2599 4913 50895258 50892955 0.000000e+00 3273
9 TraesCS3B01G093900 chr3A 92.842 950 54 11 5686 6626 50891965 50891021 0.000000e+00 1365
10 TraesCS3B01G093900 chr3A 89.410 831 51 22 4947 5768 50892884 50892082 0.000000e+00 1013
11 TraesCS3B01G093900 chr3A 87.070 727 45 23 600 1301 50896640 50895938 0.000000e+00 776
12 TraesCS3B01G093900 chr3A 91.252 503 28 11 1 493 50897334 50896838 0.000000e+00 671
13 TraesCS3B01G093900 chr3A 86.134 476 37 8 1834 2305 50895896 50895446 2.780000e-133 486
14 TraesCS3B01G093900 chr3A 88.699 292 17 8 2329 2605 50895468 50895178 6.360000e-90 342


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G093900 chr3B 62947849 62954476 6627 True 5629.000000 8855 100.000000 1 6628 2 chr3B.!!$R1 6627
1 TraesCS3B01G093900 chr3D 39389009 39395135 6126 True 1339.833333 4968 89.036500 1 6628 6 chr3D.!!$R1 6627
2 TraesCS3B01G093900 chr3A 50891021 50897334 6313 True 1132.285714 3273 89.673571 1 6626 7 chr3A.!!$R1 6625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 515 0.109723 TTGTTGCTGGGTGGGTAGTC 59.890 55.0 0.00 0.00 0.00 2.59 F
790 907 0.242825 TCGACCGCTTCTGTTCGAAT 59.757 50.0 0.00 0.00 0.00 3.34 F
1029 1189 0.967887 TCTGCTTCCTCCTCGACCTG 60.968 60.0 0.00 0.00 0.00 4.00 F
2220 2420 0.098200 CCGCTGATGCTGTGACATTG 59.902 55.0 0.00 0.00 36.97 2.82 F
2477 2681 0.250858 CATGGGTCTGTGCCAACTGA 60.251 55.0 0.00 0.00 32.40 3.41 F
3806 4052 0.538977 AGATATGCAGGTGCCATGGC 60.539 55.0 30.54 30.54 41.18 4.40 F
5227 5526 0.038159 CGAGTTCCGAAAGACAGGCT 60.038 55.0 0.00 0.00 41.76 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 2033 0.458543 CACGCAGCACCGAGATAACT 60.459 55.0 2.96 0.00 0.00 2.24 R
1873 2039 0.528466 ATCATACACGCAGCACCGAG 60.528 55.0 2.96 0.00 0.00 4.63 R
2537 2742 0.674895 GGGCGAATTGACTGCTCAGT 60.675 55.0 1.62 1.62 45.84 3.41 R
3070 3275 0.111832 TACCAGGACTGTGTCTCCGT 59.888 55.0 0.00 0.00 32.45 4.69 R
4397 4643 0.030101 ATTGTTTCGGTGTTGCACGG 59.970 50.0 0.00 1.18 34.83 4.94 R
5233 5532 0.322906 CTTCTTCTCCCTGGGTTGGC 60.323 60.0 13.56 0.00 0.00 4.52 R
6572 7109 1.391157 GGCTGTCCAAGTTTGTGCCA 61.391 55.0 0.00 0.00 38.79 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.124477 GCGAAACTGTACTGCGTTCTC 59.876 52.381 12.14 4.18 0.00 2.87
60 61 2.359850 GCCACAAGCCCATCGTCA 60.360 61.111 0.00 0.00 34.35 4.35
126 127 1.265454 GGACCACCTCCGAGATGGTT 61.265 60.000 16.15 0.00 39.82 3.67
139 140 1.915614 GATGGTTGTGCTGCACTCCG 61.916 60.000 30.43 0.00 35.11 4.63
180 181 4.821589 GGCGGCCTGAGGAAGACG 62.822 72.222 12.87 1.43 0.00 4.18
190 191 0.603569 GAGGAAGACGAGCCACAAGA 59.396 55.000 0.00 0.00 0.00 3.02
202 203 1.512926 CCACAAGAAGAACTCCCACG 58.487 55.000 0.00 0.00 0.00 4.94
242 243 0.380378 GCGTGTTTCAAACCAGCTGA 59.620 50.000 17.39 0.00 32.45 4.26
300 301 4.124351 TCGTTTCCTCGCGGCGAT 62.124 61.111 26.60 0.00 34.61 4.58
403 404 0.757188 CTCCGTCCAGTAGCCCTGAT 60.757 60.000 2.65 0.00 44.49 2.90
452 465 4.202315 TGGTTGTAGAAGCTATGTGTGTGT 60.202 41.667 3.31 0.00 0.00 3.72
453 466 4.152402 GGTTGTAGAAGCTATGTGTGTGTG 59.848 45.833 0.00 0.00 0.00 3.82
454 467 4.600692 TGTAGAAGCTATGTGTGTGTGT 57.399 40.909 0.00 0.00 0.00 3.72
455 468 4.306600 TGTAGAAGCTATGTGTGTGTGTG 58.693 43.478 0.00 0.00 0.00 3.82
456 469 3.475566 AGAAGCTATGTGTGTGTGTGT 57.524 42.857 0.00 0.00 0.00 3.72
457 470 3.133691 AGAAGCTATGTGTGTGTGTGTG 58.866 45.455 0.00 0.00 0.00 3.82
458 471 2.620251 AGCTATGTGTGTGTGTGTGT 57.380 45.000 0.00 0.00 0.00 3.72
459 472 3.744238 AGCTATGTGTGTGTGTGTGTA 57.256 42.857 0.00 0.00 0.00 2.90
479 492 3.176552 AGTCTGTGATGTAGAGCATGC 57.823 47.619 10.51 10.51 38.06 4.06
481 494 1.832998 TCTGTGATGTAGAGCATGCCA 59.167 47.619 15.66 5.32 38.06 4.92
495 508 0.322322 ATGCCAATTGTTGCTGGGTG 59.678 50.000 4.43 0.00 32.95 4.61
496 509 1.004679 GCCAATTGTTGCTGGGTGG 60.005 57.895 4.43 0.00 32.95 4.61
497 510 1.672898 CCAATTGTTGCTGGGTGGG 59.327 57.895 4.43 0.00 0.00 4.61
498 511 1.120795 CCAATTGTTGCTGGGTGGGT 61.121 55.000 4.43 0.00 0.00 4.51
499 512 1.626686 CAATTGTTGCTGGGTGGGTA 58.373 50.000 0.00 0.00 0.00 3.69
500 513 1.545582 CAATTGTTGCTGGGTGGGTAG 59.454 52.381 0.00 0.00 0.00 3.18
502 515 0.109723 TTGTTGCTGGGTGGGTAGTC 59.890 55.000 0.00 0.00 0.00 2.59
503 516 1.057275 TGTTGCTGGGTGGGTAGTCA 61.057 55.000 0.00 0.00 0.00 3.41
505 518 0.766674 TTGCTGGGTGGGTAGTCACT 60.767 55.000 0.00 0.00 37.75 3.41
506 519 0.766674 TGCTGGGTGGGTAGTCACTT 60.767 55.000 0.00 0.00 37.75 3.16
507 520 1.272807 GCTGGGTGGGTAGTCACTTA 58.727 55.000 0.00 0.00 37.75 2.24
512 577 3.008594 TGGGTGGGTAGTCACTTAACATG 59.991 47.826 0.00 0.00 37.75 3.21
527 592 1.141019 CATGAGGCCATGTGCAAGC 59.859 57.895 5.01 0.00 43.90 4.01
537 602 1.749063 CATGTGCAAGCTGGATGTGAT 59.251 47.619 0.00 0.00 0.00 3.06
607 721 9.746457 TGTACAGAAGATACTAGCATAGATGAT 57.254 33.333 0.00 0.00 42.77 2.45
612 726 8.814931 AGAAGATACTAGCATAGATGATTGCTT 58.185 33.333 2.43 0.00 46.71 3.91
632 749 7.170393 TGCTTACTGCTTTAACTGAGATCTA 57.830 36.000 0.00 0.00 43.37 1.98
648 765 5.899547 TGAGATCTACATATGTGACCTTGGT 59.100 40.000 18.81 0.00 0.00 3.67
743 860 5.718146 TCTGATCTGATGTGTCTGTCTTTC 58.282 41.667 0.00 0.00 0.00 2.62
747 864 4.625028 TCTGATGTGTCTGTCTTTCTGTG 58.375 43.478 0.00 0.00 0.00 3.66
749 866 1.953559 TGTGTCTGTCTTTCTGTGCC 58.046 50.000 0.00 0.00 0.00 5.01
755 872 0.250467 TGTCTTTCTGTGCCCTCAGC 60.250 55.000 0.00 0.00 44.14 4.26
775 892 7.182361 TCAGCTGAATTCAAATCATATCGAC 57.818 36.000 15.67 0.00 0.00 4.20
780 897 5.527214 TGAATTCAAATCATATCGACCGCTT 59.473 36.000 5.45 0.00 0.00 4.68
782 899 4.322080 TCAAATCATATCGACCGCTTCT 57.678 40.909 0.00 0.00 0.00 2.85
790 907 0.242825 TCGACCGCTTCTGTTCGAAT 59.757 50.000 0.00 0.00 0.00 3.34
816 933 4.459331 CGGGCACGCAAATGACGG 62.459 66.667 0.00 0.00 34.00 4.79
869 987 4.385405 GTGGCGCTCCTCTGCTGT 62.385 66.667 7.64 0.00 0.00 4.40
870 988 4.383861 TGGCGCTCCTCTGCTGTG 62.384 66.667 7.64 0.00 0.00 3.66
896 1014 1.541147 TGTCCCGTTTCAGTAGGTACG 59.459 52.381 0.00 0.00 0.00 3.67
897 1015 1.541588 GTCCCGTTTCAGTAGGTACGT 59.458 52.381 0.00 0.00 32.45 3.57
898 1016 2.747446 GTCCCGTTTCAGTAGGTACGTA 59.253 50.000 0.00 0.00 32.45 3.57
899 1017 2.747446 TCCCGTTTCAGTAGGTACGTAC 59.253 50.000 17.56 17.56 32.45 3.67
902 1023 4.201822 CCCGTTTCAGTAGGTACGTACTAC 60.202 50.000 23.82 21.18 40.80 2.73
957 1079 4.352887 TCGTTCAAAATTTCGAAACCACC 58.647 39.130 13.81 0.00 0.00 4.61
987 1117 2.359230 AGGTTTGCTGCTCGCTCC 60.359 61.111 0.00 0.00 40.11 4.70
988 1118 2.359230 GGTTTGCTGCTCGCTCCT 60.359 61.111 0.00 0.00 40.11 3.69
989 1119 2.394563 GGTTTGCTGCTCGCTCCTC 61.395 63.158 0.00 0.00 40.11 3.71
990 1120 2.433145 TTTGCTGCTCGCTCCTCG 60.433 61.111 0.00 0.00 40.11 4.63
1029 1189 0.967887 TCTGCTTCCTCCTCGACCTG 60.968 60.000 0.00 0.00 0.00 4.00
1102 1262 2.461637 CTCCCTCCCCCTTCCCTT 59.538 66.667 0.00 0.00 0.00 3.95
1109 1269 2.127297 CCCCTTCCCTTCCCTCCA 59.873 66.667 0.00 0.00 0.00 3.86
1117 1277 1.690219 CCCTTCCCTCCAGTCCATCG 61.690 65.000 0.00 0.00 0.00 3.84
1853 2019 1.610038 CCTGCTGCATTTCAGTGTTGA 59.390 47.619 1.31 0.00 44.66 3.18
1854 2020 2.230508 CCTGCTGCATTTCAGTGTTGAT 59.769 45.455 1.31 0.00 44.66 2.57
1861 2027 5.771469 TGCATTTCAGTGTTGATTTCGATT 58.229 33.333 0.00 0.00 32.27 3.34
1867 2033 5.478407 TCAGTGTTGATTTCGATTCTGCTA 58.522 37.500 0.00 0.00 0.00 3.49
1873 2039 8.058915 GTGTTGATTTCGATTCTGCTAGTTATC 58.941 37.037 0.00 0.00 0.00 1.75
1887 2053 0.736325 GTTATCTCGGTGCTGCGTGT 60.736 55.000 0.00 0.00 0.00 4.49
1902 2068 2.866156 TGCGTGTATGATTGCTTAGCTC 59.134 45.455 5.60 0.00 0.00 4.09
1914 2080 1.588861 GCTTAGCTCCGAATCGAACAC 59.411 52.381 3.36 0.00 0.00 3.32
2014 2190 2.280592 AACGCCAGTTCACCGACC 60.281 61.111 0.00 0.00 35.23 4.79
2015 2191 2.803817 AACGCCAGTTCACCGACCT 61.804 57.895 0.00 0.00 35.23 3.85
2050 2226 2.159114 GGTGTGTGGTGTCTGCAAAAAT 60.159 45.455 0.00 0.00 0.00 1.82
2121 2297 3.192844 CAGATTGCTATTGCCATGATCCC 59.807 47.826 0.00 0.00 38.71 3.85
2124 2300 2.347500 TGCTATTGCCATGATCCCCTA 58.653 47.619 0.00 0.00 38.71 3.53
2166 2343 3.375299 GCCTAACAACCTGCACTGAATAG 59.625 47.826 0.00 0.00 0.00 1.73
2214 2394 1.450134 TTAGGCCGCTGATGCTGTG 60.450 57.895 0.00 0.00 36.97 3.66
2218 2418 2.110967 GCCGCTGATGCTGTGACAT 61.111 57.895 0.00 0.00 36.97 3.06
2219 2419 1.651240 GCCGCTGATGCTGTGACATT 61.651 55.000 0.00 0.00 36.97 2.71
2220 2420 0.098200 CCGCTGATGCTGTGACATTG 59.902 55.000 0.00 0.00 36.97 2.82
2221 2421 0.522705 CGCTGATGCTGTGACATTGC 60.523 55.000 0.00 0.00 36.97 3.56
2222 2422 0.524414 GCTGATGCTGTGACATTGCA 59.476 50.000 1.90 1.90 41.13 4.08
2278 2482 4.791411 GCATTCCTTTTGTACGCTTGTTCA 60.791 41.667 0.00 0.00 0.00 3.18
2293 2497 5.506317 CGCTTGTTCAGATCCTTTCAGTTTT 60.506 40.000 0.00 0.00 0.00 2.43
2294 2498 6.293407 CGCTTGTTCAGATCCTTTCAGTTTTA 60.293 38.462 0.00 0.00 0.00 1.52
2295 2499 6.858478 GCTTGTTCAGATCCTTTCAGTTTTAC 59.142 38.462 0.00 0.00 0.00 2.01
2296 2500 7.255277 GCTTGTTCAGATCCTTTCAGTTTTACT 60.255 37.037 0.00 0.00 0.00 2.24
2297 2501 9.273016 CTTGTTCAGATCCTTTCAGTTTTACTA 57.727 33.333 0.00 0.00 0.00 1.82
2298 2502 9.621629 TTGTTCAGATCCTTTCAGTTTTACTAA 57.378 29.630 0.00 0.00 0.00 2.24
2299 2503 9.793259 TGTTCAGATCCTTTCAGTTTTACTAAT 57.207 29.630 0.00 0.00 0.00 1.73
2302 2506 9.582431 TCAGATCCTTTCAGTTTTACTAATACG 57.418 33.333 0.00 0.00 0.00 3.06
2303 2507 9.367444 CAGATCCTTTCAGTTTTACTAATACGT 57.633 33.333 0.00 0.00 0.00 3.57
2304 2508 9.583765 AGATCCTTTCAGTTTTACTAATACGTC 57.416 33.333 0.00 0.00 0.00 4.34
2305 2509 8.713737 ATCCTTTCAGTTTTACTAATACGTCC 57.286 34.615 0.00 0.00 0.00 4.79
2306 2510 7.099120 TCCTTTCAGTTTTACTAATACGTCCC 58.901 38.462 0.00 0.00 0.00 4.46
2307 2511 6.314648 CCTTTCAGTTTTACTAATACGTCCCC 59.685 42.308 0.00 0.00 0.00 4.81
2308 2512 5.343307 TCAGTTTTACTAATACGTCCCCC 57.657 43.478 0.00 0.00 0.00 5.40
2353 2557 8.225777 CCTTTCAGTTTTACTAATACGTCAACC 58.774 37.037 0.00 0.00 0.00 3.77
2433 2637 0.598065 ATGCTGTCGAAAACTTGCCC 59.402 50.000 0.00 0.00 0.00 5.36
2477 2681 0.250858 CATGGGTCTGTGCCAACTGA 60.251 55.000 0.00 0.00 32.40 3.41
2534 2739 2.871096 TGGTTCTGCCCGTAGAAAAT 57.129 45.000 0.00 0.00 38.33 1.82
2535 2740 2.432444 TGGTTCTGCCCGTAGAAAATG 58.568 47.619 0.00 0.00 38.33 2.32
2536 2741 2.039216 TGGTTCTGCCCGTAGAAAATGA 59.961 45.455 0.00 0.00 38.33 2.57
2537 2742 3.078837 GGTTCTGCCCGTAGAAAATGAA 58.921 45.455 0.00 0.00 38.33 2.57
2538 2743 3.119955 GGTTCTGCCCGTAGAAAATGAAC 60.120 47.826 0.00 0.00 38.33 3.18
2539 2744 3.695830 TCTGCCCGTAGAAAATGAACT 57.304 42.857 0.00 0.00 0.00 3.01
2540 2745 3.334691 TCTGCCCGTAGAAAATGAACTG 58.665 45.455 0.00 0.00 0.00 3.16
2541 2746 3.007506 TCTGCCCGTAGAAAATGAACTGA 59.992 43.478 0.00 0.00 0.00 3.41
2542 2747 3.334691 TGCCCGTAGAAAATGAACTGAG 58.665 45.455 0.00 0.00 0.00 3.35
2543 2748 2.096013 GCCCGTAGAAAATGAACTGAGC 59.904 50.000 0.00 0.00 0.00 4.26
2544 2749 3.334691 CCCGTAGAAAATGAACTGAGCA 58.665 45.455 0.00 0.00 0.00 4.26
2545 2750 3.372206 CCCGTAGAAAATGAACTGAGCAG 59.628 47.826 0.00 0.00 0.00 4.24
2546 2751 3.997021 CCGTAGAAAATGAACTGAGCAGT 59.003 43.478 0.00 0.00 44.94 4.40
2547 2752 4.092091 CCGTAGAAAATGAACTGAGCAGTC 59.908 45.833 3.27 0.00 41.58 3.51
2548 2753 4.686091 CGTAGAAAATGAACTGAGCAGTCA 59.314 41.667 3.27 4.71 41.58 3.41
2549 2754 5.177511 CGTAGAAAATGAACTGAGCAGTCAA 59.822 40.000 3.27 0.00 41.58 3.18
2550 2755 6.128445 CGTAGAAAATGAACTGAGCAGTCAAT 60.128 38.462 3.27 0.00 41.58 2.57
2551 2756 6.645790 AGAAAATGAACTGAGCAGTCAATT 57.354 33.333 3.27 4.59 41.58 2.32
2552 2757 6.675987 AGAAAATGAACTGAGCAGTCAATTC 58.324 36.000 3.27 11.34 41.58 2.17
2553 2758 4.675190 AATGAACTGAGCAGTCAATTCG 57.325 40.909 3.27 0.00 41.02 3.34
2554 2759 1.800586 TGAACTGAGCAGTCAATTCGC 59.199 47.619 3.27 0.00 41.02 4.70
2555 2760 1.129437 GAACTGAGCAGTCAATTCGCC 59.871 52.381 3.27 0.00 41.58 5.54
2556 2761 0.674895 ACTGAGCAGTCAATTCGCCC 60.675 55.000 0.00 0.00 36.92 6.13
2557 2762 1.699656 CTGAGCAGTCAATTCGCCCG 61.700 60.000 0.00 0.00 30.14 6.13
2558 2763 1.741770 GAGCAGTCAATTCGCCCGT 60.742 57.895 0.00 0.00 0.00 5.28
2559 2764 1.298859 GAGCAGTCAATTCGCCCGTT 61.299 55.000 0.00 0.00 0.00 4.44
2560 2765 1.134694 GCAGTCAATTCGCCCGTTC 59.865 57.895 0.00 0.00 0.00 3.95
2561 2766 1.298859 GCAGTCAATTCGCCCGTTCT 61.299 55.000 0.00 0.00 0.00 3.01
2562 2767 1.156736 CAGTCAATTCGCCCGTTCTT 58.843 50.000 0.00 0.00 0.00 2.52
2563 2768 2.343101 CAGTCAATTCGCCCGTTCTTA 58.657 47.619 0.00 0.00 0.00 2.10
2564 2769 2.739913 CAGTCAATTCGCCCGTTCTTAA 59.260 45.455 0.00 0.00 0.00 1.85
2565 2770 3.374058 CAGTCAATTCGCCCGTTCTTAAT 59.626 43.478 0.00 0.00 0.00 1.40
2566 2771 4.569162 CAGTCAATTCGCCCGTTCTTAATA 59.431 41.667 0.00 0.00 0.00 0.98
2567 2772 4.569564 AGTCAATTCGCCCGTTCTTAATAC 59.430 41.667 0.00 0.00 0.00 1.89
2568 2773 4.330620 GTCAATTCGCCCGTTCTTAATACA 59.669 41.667 0.00 0.00 0.00 2.29
2569 2774 4.569162 TCAATTCGCCCGTTCTTAATACAG 59.431 41.667 0.00 0.00 0.00 2.74
2570 2775 2.589798 TCGCCCGTTCTTAATACAGG 57.410 50.000 0.00 0.00 0.00 4.00
2571 2776 1.137479 TCGCCCGTTCTTAATACAGGG 59.863 52.381 10.61 10.61 41.65 4.45
2572 2777 1.808891 CGCCCGTTCTTAATACAGGGG 60.809 57.143 14.01 9.41 39.24 4.79
2573 2778 1.487558 GCCCGTTCTTAATACAGGGGA 59.512 52.381 9.55 0.00 37.77 4.81
2574 2779 2.105993 GCCCGTTCTTAATACAGGGGAT 59.894 50.000 9.55 0.00 37.77 3.85
2575 2780 3.434596 GCCCGTTCTTAATACAGGGGATT 60.435 47.826 9.55 0.00 37.77 3.01
2576 2781 4.202388 GCCCGTTCTTAATACAGGGGATTA 60.202 45.833 9.55 0.00 37.77 1.75
2577 2782 5.514310 GCCCGTTCTTAATACAGGGGATTAT 60.514 44.000 9.55 0.00 37.77 1.28
2578 2783 6.171213 CCCGTTCTTAATACAGGGGATTATC 58.829 44.000 0.00 0.00 37.77 1.75
2579 2784 6.013639 CCCGTTCTTAATACAGGGGATTATCT 60.014 42.308 0.00 0.00 37.77 1.98
2580 2785 7.450903 CCGTTCTTAATACAGGGGATTATCTT 58.549 38.462 0.00 0.00 0.00 2.40
2581 2786 7.387948 CCGTTCTTAATACAGGGGATTATCTTG 59.612 40.741 0.00 0.00 0.00 3.02
2582 2787 8.148351 CGTTCTTAATACAGGGGATTATCTTGA 58.852 37.037 0.00 0.00 0.00 3.02
2583 2788 9.495572 GTTCTTAATACAGGGGATTATCTTGAG 57.504 37.037 0.00 0.00 0.00 3.02
2584 2789 9.447279 TTCTTAATACAGGGGATTATCTTGAGA 57.553 33.333 0.00 0.00 0.00 3.27
2585 2790 9.621239 TCTTAATACAGGGGATTATCTTGAGAT 57.379 33.333 0.00 0.00 38.51 2.75
2588 2793 7.986553 ATACAGGGGATTATCTTGAGATAGG 57.013 40.000 1.39 0.00 38.18 2.57
2589 2794 5.982391 ACAGGGGATTATCTTGAGATAGGA 58.018 41.667 1.39 0.00 38.18 2.94
2590 2795 6.393897 ACAGGGGATTATCTTGAGATAGGAA 58.606 40.000 1.39 0.00 38.18 3.36
2591 2796 6.851836 ACAGGGGATTATCTTGAGATAGGAAA 59.148 38.462 1.39 0.00 38.18 3.13
2592 2797 7.519004 ACAGGGGATTATCTTGAGATAGGAAAT 59.481 37.037 1.39 0.00 38.18 2.17
2593 2798 8.389366 CAGGGGATTATCTTGAGATAGGAAATT 58.611 37.037 1.39 0.00 38.18 1.82
2594 2799 8.964351 AGGGGATTATCTTGAGATAGGAAATTT 58.036 33.333 0.00 0.00 38.18 1.82
2618 2823 4.388485 TCTGAACTGAGCAGCATAAACAA 58.612 39.130 0.00 0.00 33.45 2.83
2627 2832 6.151691 TGAGCAGCATAAACAAAGTCAATTC 58.848 36.000 0.00 0.00 0.00 2.17
2633 2838 3.369546 AAACAAAGTCAATTCGCCTGG 57.630 42.857 0.00 0.00 0.00 4.45
2644 2849 5.527582 GTCAATTCGCCTGGTCTTAATACAT 59.472 40.000 0.00 0.00 0.00 2.29
2829 3034 3.050619 CGAAGATCACTTATGGTACGGC 58.949 50.000 0.00 0.00 36.39 5.68
2851 3056 5.397326 GCTGCTGATTTCTCGATTTCTTTT 58.603 37.500 0.00 0.00 0.00 2.27
2874 3079 5.569355 TGAAAGGGATTGAGTATTGCTTCA 58.431 37.500 0.00 0.00 0.00 3.02
2901 3106 8.688151 TGCACAATTTGATTCTCATGATAATGA 58.312 29.630 10.77 0.09 0.00 2.57
3027 3232 6.957920 TGATGATGTTTCTGAAAACTCCAA 57.042 33.333 4.09 0.00 44.23 3.53
3064 3269 5.297776 CAGAATCAGTGACCTTGAAAACTGT 59.702 40.000 0.00 0.00 40.69 3.55
3070 3275 5.123186 CAGTGACCTTGAAAACTGTGTTGTA 59.877 40.000 0.00 0.00 36.20 2.41
3073 3278 3.375922 ACCTTGAAAACTGTGTTGTACGG 59.624 43.478 0.00 0.00 41.64 4.02
3077 3282 3.866910 TGAAAACTGTGTTGTACGGAGAC 59.133 43.478 0.00 0.00 39.08 3.36
3105 3310 2.768527 CTGGTAAGGAGGCTTGATGAGA 59.231 50.000 0.00 0.00 0.00 3.27
3107 3312 2.484594 GGTAAGGAGGCTTGATGAGAGC 60.485 54.545 0.00 0.00 39.41 4.09
3111 3316 0.829333 GAGGCTTGATGAGAGCAGGA 59.171 55.000 0.00 0.00 41.89 3.86
3122 3327 7.787623 TGATGAGAGCAGGAATCATCTATTA 57.212 36.000 13.71 0.00 46.16 0.98
3123 3328 7.838884 TGATGAGAGCAGGAATCATCTATTAG 58.161 38.462 13.71 0.00 46.16 1.73
3127 3332 7.508636 TGAGAGCAGGAATCATCTATTAGTCTT 59.491 37.037 0.00 0.00 0.00 3.01
3128 3333 8.261349 AGAGCAGGAATCATCTATTAGTCTTT 57.739 34.615 0.00 0.00 0.00 2.52
3215 3456 6.932356 ATGATCATGTAGCTTAAACTGTGG 57.068 37.500 7.59 0.00 0.00 4.17
3285 3526 8.648693 GGTTAGTACTCCCATATAATGAGTTGT 58.351 37.037 0.00 0.72 39.84 3.32
3288 3529 8.964476 AGTACTCCCATATAATGAGTTGTTTG 57.036 34.615 7.28 0.00 39.84 2.93
3294 3535 5.745294 CCATATAATGAGTTGTTTGCACTGC 59.255 40.000 0.00 0.00 0.00 4.40
3316 3558 5.797934 TGCAAAGTTAACTTTTCACACTTCG 59.202 36.000 27.12 15.31 43.07 3.79
3337 3583 4.702131 TCGTCTAACACTAAGACCCCTAAC 59.298 45.833 0.00 0.00 40.24 2.34
3433 3679 3.870274 TGACAAGGAAGAGATGATGCAG 58.130 45.455 0.00 0.00 0.00 4.41
3517 3763 7.867305 ATATCCATCAGCAAATCAGATCATC 57.133 36.000 0.00 0.00 0.00 2.92
3545 3791 8.514330 TGGTTTTCCATATTGTCAGGTAATAC 57.486 34.615 0.00 0.00 46.22 1.89
3574 3820 3.508845 ACACAAGCCACCTTTGACTAT 57.491 42.857 0.00 0.00 0.00 2.12
3614 3860 6.147821 AGACATACAACAGCATACAACAGAAC 59.852 38.462 0.00 0.00 0.00 3.01
3709 3955 7.678194 TTTTAGCTTTTCGTTTGACAAGATG 57.322 32.000 0.00 0.00 34.48 2.90
3710 3956 4.228912 AGCTTTTCGTTTGACAAGATGG 57.771 40.909 0.00 0.00 34.48 3.51
3806 4052 0.538977 AGATATGCAGGTGCCATGGC 60.539 55.000 30.54 30.54 41.18 4.40
3821 4067 1.847506 TGGCCGCCCCATAGATGAT 60.848 57.895 7.03 0.00 39.18 2.45
3833 4079 5.299279 CCCCATAGATGATGTTACCACAAAC 59.701 44.000 0.00 0.00 36.16 2.93
4052 4298 4.043059 ACCCACTACTCTTGACTACTGAGA 59.957 45.833 0.00 0.00 0.00 3.27
4266 4512 6.648879 TTTTCCCAGACCATCTTTACTTTG 57.351 37.500 0.00 0.00 0.00 2.77
4330 4576 6.318648 TCCCAAATTCTGAGTATTGTGTATGC 59.681 38.462 0.00 0.00 0.00 3.14
4384 4630 3.340814 TTCAAGCTTGATCAGGGACTC 57.659 47.619 28.89 0.00 34.22 3.36
4397 4643 2.505118 GACTCGTGTGCTCCTCGC 60.505 66.667 0.00 0.00 39.77 5.03
4408 4654 4.980805 TCCTCGCCGTGCAACACC 62.981 66.667 0.00 0.00 35.74 4.16
4459 4705 5.869579 TGTTATTATCTCCTTCAGCCATCC 58.130 41.667 0.00 0.00 0.00 3.51
4487 4733 2.420687 GGACCAATGCTTCTGAGGGTAG 60.421 54.545 0.00 0.00 0.00 3.18
4493 4739 2.889512 TGCTTCTGAGGGTAGAGTCAA 58.110 47.619 0.00 0.00 0.00 3.18
4494 4740 2.563179 TGCTTCTGAGGGTAGAGTCAAC 59.437 50.000 0.00 0.00 0.00 3.18
4495 4741 2.563179 GCTTCTGAGGGTAGAGTCAACA 59.437 50.000 0.00 0.00 0.00 3.33
4497 4743 4.323104 GCTTCTGAGGGTAGAGTCAACATT 60.323 45.833 0.00 0.00 0.00 2.71
4503 4749 2.838202 GGGTAGAGTCAACATTCCCTGA 59.162 50.000 0.00 0.00 0.00 3.86
4504 4750 3.263425 GGGTAGAGTCAACATTCCCTGAA 59.737 47.826 0.00 0.00 0.00 3.02
4515 4761 6.770303 TCAACATTCCCTGAATTATCGCAATA 59.230 34.615 0.00 0.00 28.87 1.90
4518 4764 8.498054 ACATTCCCTGAATTATCGCAATATAG 57.502 34.615 0.00 0.00 28.87 1.31
4519 4765 7.554118 ACATTCCCTGAATTATCGCAATATAGG 59.446 37.037 0.00 0.00 28.87 2.57
4520 4766 5.989477 TCCCTGAATTATCGCAATATAGGG 58.011 41.667 16.66 16.66 42.90 3.53
4522 4768 5.586243 CCCTGAATTATCGCAATATAGGGTG 59.414 44.000 15.55 0.00 38.00 4.61
4534 4786 5.566627 GCAATATAGGGTGTGTGCTTTGTTT 60.567 40.000 0.00 0.00 0.00 2.83
4544 4796 1.063912 GTGCTTTGTTTTTGCTTGGCC 59.936 47.619 0.00 0.00 0.00 5.36
4562 4814 1.972872 CCCTGATGGTAGGAACATGC 58.027 55.000 0.00 0.00 40.42 4.06
4720 4973 4.511527 CTCCATGTCTCTGTAGTTGCATT 58.488 43.478 0.00 0.00 0.00 3.56
4737 4990 0.686224 ATTGTGTGGTTGCCATTGGG 59.314 50.000 4.53 0.00 35.28 4.12
4746 4999 0.968405 TTGCCATTGGGTTCTCAAGC 59.032 50.000 4.53 0.00 36.17 4.01
4793 5049 4.276926 ACTTGGAAGTGTTTCAGATTGCTC 59.723 41.667 0.00 0.00 37.98 4.26
4927 5191 4.642445 TCATAATGCTTCACTTGGCATG 57.358 40.909 1.16 0.00 46.70 4.06
5025 5324 6.555315 GTTGTGATTGACTCAACTTCACTTT 58.445 36.000 19.38 0.00 44.48 2.66
5227 5526 0.038159 CGAGTTCCGAAAGACAGGCT 60.038 55.000 0.00 0.00 41.76 4.58
5228 5527 1.715993 GAGTTCCGAAAGACAGGCTC 58.284 55.000 0.00 0.00 0.00 4.70
5229 5528 0.321996 AGTTCCGAAAGACAGGCTCC 59.678 55.000 0.00 0.00 0.00 4.70
5230 5529 0.673956 GTTCCGAAAGACAGGCTCCC 60.674 60.000 0.00 0.00 0.00 4.30
5231 5530 1.838073 TTCCGAAAGACAGGCTCCCC 61.838 60.000 0.00 0.00 0.00 4.81
5232 5531 2.592993 CCGAAAGACAGGCTCCCCA 61.593 63.158 0.00 0.00 0.00 4.96
5233 5532 1.078848 CGAAAGACAGGCTCCCCAG 60.079 63.158 0.00 0.00 0.00 4.45
5234 5533 1.377856 GAAAGACAGGCTCCCCAGC 60.378 63.158 0.00 0.00 46.06 4.85
5242 5541 4.748144 GCTCCCCAGCCAACCCAG 62.748 72.222 0.00 0.00 40.14 4.45
5243 5542 4.052518 CTCCCCAGCCAACCCAGG 62.053 72.222 0.00 0.00 0.00 4.45
5246 5545 4.052518 CCCAGCCAACCCAGGGAG 62.053 72.222 14.54 3.82 44.30 4.30
5247 5546 2.935481 CCAGCCAACCCAGGGAGA 60.935 66.667 14.54 0.00 0.00 3.71
5248 5547 2.538141 CCAGCCAACCCAGGGAGAA 61.538 63.158 14.54 0.00 0.00 2.87
5249 5548 1.001641 CAGCCAACCCAGGGAGAAG 60.002 63.158 14.54 0.00 0.00 2.85
5250 5549 1.151810 AGCCAACCCAGGGAGAAGA 60.152 57.895 14.54 0.00 0.00 2.87
5251 5550 0.772124 AGCCAACCCAGGGAGAAGAA 60.772 55.000 14.54 0.00 0.00 2.52
5252 5551 0.322906 GCCAACCCAGGGAGAAGAAG 60.323 60.000 14.54 0.00 0.00 2.85
5253 5552 0.322906 CCAACCCAGGGAGAAGAAGC 60.323 60.000 14.54 0.00 0.00 3.86
5432 5761 0.528470 CACTGGACGAGAAGACCTCC 59.472 60.000 0.00 0.00 38.71 4.30
5534 5869 1.733041 CGGTGGTGTCAGTAGCACG 60.733 63.158 0.00 0.00 46.93 5.34
5539 5874 2.048222 TGTCAGTAGCACGCAGGC 60.048 61.111 0.00 0.00 0.00 4.85
5540 5875 2.815647 GTCAGTAGCACGCAGGCC 60.816 66.667 0.00 0.00 0.00 5.19
5629 5964 1.910688 CGAAAGCCCGTCTCTTAGAC 58.089 55.000 0.00 0.00 41.71 2.59
5638 5973 2.424246 CCGTCTCTTAGACCTCCAGTTC 59.576 54.545 1.63 0.00 42.12 3.01
5647 5982 0.972883 ACCTCCAGTTCACTCTGCTC 59.027 55.000 0.00 0.00 34.47 4.26
5696 6223 7.952671 ACTTCACTAGTTACTTCATGAGTTCA 58.047 34.615 0.00 0.00 39.86 3.18
5741 6268 8.443160 TGATATTCTCAACATGTTTTCGTTCTC 58.557 33.333 8.77 2.75 0.00 2.87
5749 6278 7.543868 TCAACATGTTTTCGTTCTCAAATTGTT 59.456 29.630 8.77 0.00 0.00 2.83
5762 6291 9.214953 GTTCTCAAATTGTTAATATGAAGCTCG 57.785 33.333 0.00 0.00 0.00 5.03
5775 6304 4.371855 TGAAGCTCGACGATAAGTTGAT 57.628 40.909 0.00 0.00 42.10 2.57
5779 6308 6.978659 TGAAGCTCGACGATAAGTTGATAAAT 59.021 34.615 0.00 0.00 42.10 1.40
5803 6332 7.012661 TGATATATCATGAGACACTGGCATT 57.987 36.000 11.49 0.00 0.00 3.56
5808 6337 4.002982 TCATGAGACACTGGCATTAACAC 58.997 43.478 0.00 0.00 0.00 3.32
5809 6338 2.412870 TGAGACACTGGCATTAACACG 58.587 47.619 0.00 0.00 0.00 4.49
5814 6343 1.535028 CACTGGCATTAACACGCAGAA 59.465 47.619 0.00 0.00 0.00 3.02
5826 6355 9.373750 CATTAACACGCAGAAAATACATAGATG 57.626 33.333 0.00 0.00 0.00 2.90
5841 6370 5.911752 ACATAGATGAACAGCTTCTACTGG 58.088 41.667 0.00 0.00 42.21 4.00
5849 6380 2.826725 ACAGCTTCTACTGGGTAGACAC 59.173 50.000 6.88 3.35 43.65 3.67
5925 6456 1.304879 GCTGGGGTACAAATGGCCA 60.305 57.895 8.56 8.56 0.00 5.36
5958 6490 2.549349 GGCAAGAACGAGGGTTTAGACA 60.549 50.000 0.00 0.00 36.24 3.41
5964 6496 2.537143 ACGAGGGTTTAGACATCCAGT 58.463 47.619 0.00 0.00 0.00 4.00
5970 6502 3.134262 GGGTTTAGACATCCAGTACCCTC 59.866 52.174 0.00 0.00 40.43 4.30
6023 6555 0.671163 TTGCGCTTACGGTTACAGGG 60.671 55.000 9.73 0.00 40.57 4.45
6046 6578 1.071471 CTTGGGTCACTCCACGCTT 59.929 57.895 0.00 0.00 36.38 4.68
6152 6689 0.541392 ATGGCAGCATCGGTGAAGTA 59.459 50.000 0.00 0.00 32.22 2.24
6365 6902 0.392863 CCAGATGCCGGTGTGATTGA 60.393 55.000 1.90 0.00 0.00 2.57
6377 6914 1.202758 TGTGATTGAACCAGAGGCGTT 60.203 47.619 0.00 0.00 0.00 4.84
6404 6941 6.243900 CCATTCAAATATAGTCTGCCATCCT 58.756 40.000 0.00 0.00 0.00 3.24
6407 6944 3.325293 AATATAGTCTGCCATCCTGCG 57.675 47.619 0.00 0.00 0.00 5.18
6479 7016 1.211969 GCCGAAGCTGTAGACGTCA 59.788 57.895 19.50 0.48 35.50 4.35
6521 7058 0.391927 TGTAAATGAACTCGGGGGCG 60.392 55.000 0.00 0.00 0.00 6.13
6572 7109 2.158900 CCTCTCGTGCATTACTTCCCAT 60.159 50.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.648467 GATGGGCTTGTGGCGAGAAC 61.648 60.000 0.00 0.00 42.94 3.01
42 43 3.499737 GACGATGGGCTTGTGGCG 61.500 66.667 0.00 0.00 42.94 5.69
60 61 3.467226 CCCGCGATGTGTAGGGGT 61.467 66.667 8.23 0.00 40.18 4.95
180 181 1.072331 TGGGAGTTCTTCTTGTGGCTC 59.928 52.381 0.00 0.00 0.00 4.70
190 191 2.657237 CTCGGCGTGGGAGTTCTT 59.343 61.111 6.85 0.00 0.00 2.52
242 243 1.920835 GAGAACCCCTGGCCAGAGT 60.921 63.158 34.91 26.24 0.00 3.24
300 301 0.464036 CCTGCCACGCTATCTGGTAA 59.536 55.000 0.00 0.00 0.00 2.85
403 404 3.612247 GAGCTTCAGCCGAGCCCAA 62.612 63.158 0.00 0.00 43.38 4.12
422 434 0.237498 GCTTCTACAACCAACACGCC 59.763 55.000 0.00 0.00 0.00 5.68
423 435 1.226746 AGCTTCTACAACCAACACGC 58.773 50.000 0.00 0.00 0.00 5.34
424 436 3.994392 ACATAGCTTCTACAACCAACACG 59.006 43.478 0.00 0.00 0.00 4.49
452 465 4.082733 GCTCTACATCACAGACTACACACA 60.083 45.833 0.00 0.00 0.00 3.72
453 466 4.082733 TGCTCTACATCACAGACTACACAC 60.083 45.833 0.00 0.00 0.00 3.82
454 467 4.079253 TGCTCTACATCACAGACTACACA 58.921 43.478 0.00 0.00 0.00 3.72
455 468 4.703645 TGCTCTACATCACAGACTACAC 57.296 45.455 0.00 0.00 0.00 2.90
456 469 4.440663 GCATGCTCTACATCACAGACTACA 60.441 45.833 11.37 0.00 36.64 2.74
457 470 4.047822 GCATGCTCTACATCACAGACTAC 58.952 47.826 11.37 0.00 36.64 2.73
458 471 3.068732 GGCATGCTCTACATCACAGACTA 59.931 47.826 18.92 0.00 36.64 2.59
459 472 2.158986 GGCATGCTCTACATCACAGACT 60.159 50.000 18.92 0.00 36.64 3.24
479 492 1.120795 ACCCACCCAGCAACAATTGG 61.121 55.000 10.83 0.00 0.00 3.16
481 494 1.146982 ACTACCCACCCAGCAACAATT 59.853 47.619 0.00 0.00 0.00 2.32
495 508 3.532542 GCCTCATGTTAAGTGACTACCC 58.467 50.000 0.00 0.00 0.00 3.69
496 509 3.055385 TGGCCTCATGTTAAGTGACTACC 60.055 47.826 3.32 0.00 0.00 3.18
497 510 4.202245 TGGCCTCATGTTAAGTGACTAC 57.798 45.455 3.32 0.00 0.00 2.73
498 511 4.769688 CATGGCCTCATGTTAAGTGACTA 58.230 43.478 3.32 0.00 44.22 2.59
499 512 3.614092 CATGGCCTCATGTTAAGTGACT 58.386 45.455 3.32 0.00 44.22 3.41
512 577 2.707849 CCAGCTTGCACATGGCCTC 61.708 63.158 3.32 0.00 43.89 4.70
526 591 2.034305 GCCTGAATTCATCACATCCAGC 59.966 50.000 8.96 0.00 33.47 4.85
527 592 3.552875 AGCCTGAATTCATCACATCCAG 58.447 45.455 8.96 0.00 33.47 3.86
537 602 8.956426 CCAAACTAAACTATAAGCCTGAATTCA 58.044 33.333 8.12 8.12 0.00 2.57
632 749 3.084039 CAGCAACCAAGGTCACATATGT 58.916 45.455 1.41 1.41 0.00 2.29
648 765 8.234577 TATGGATTCATATATGGCAAGCAGCAA 61.235 37.037 12.78 0.00 38.77 3.91
689 806 6.431234 GGAACTAAAGCCGGAATTCATCATAT 59.569 38.462 5.05 0.00 0.00 1.78
690 807 5.763204 GGAACTAAAGCCGGAATTCATCATA 59.237 40.000 5.05 0.00 0.00 2.15
691 808 4.580580 GGAACTAAAGCCGGAATTCATCAT 59.419 41.667 5.05 0.00 0.00 2.45
692 809 3.945285 GGAACTAAAGCCGGAATTCATCA 59.055 43.478 5.05 0.00 0.00 3.07
693 810 3.002348 CGGAACTAAAGCCGGAATTCATC 59.998 47.826 5.05 0.00 43.67 2.92
694 811 2.943033 CGGAACTAAAGCCGGAATTCAT 59.057 45.455 5.05 0.00 43.67 2.57
743 860 1.093159 GAATTCAGCTGAGGGCACAG 58.907 55.000 17.43 6.57 44.79 3.66
747 864 2.756760 TGATTTGAATTCAGCTGAGGGC 59.243 45.455 17.43 10.33 42.19 5.19
749 866 6.426025 TCGATATGATTTGAATTCAGCTGAGG 59.574 38.462 17.43 0.00 0.00 3.86
755 872 5.178252 AGCGGTCGATATGATTTGAATTCAG 59.822 40.000 8.41 0.00 0.00 3.02
775 892 0.370273 CGGAATTCGAACAGAAGCGG 59.630 55.000 0.00 0.00 42.92 5.52
797 914 4.114997 GTCATTTGCGTGCCCGGG 62.115 66.667 19.09 19.09 33.68 5.73
869 987 0.813610 CTGAAACGGGACACAGCACA 60.814 55.000 0.00 0.00 0.00 4.57
870 988 0.814010 ACTGAAACGGGACACAGCAC 60.814 55.000 0.00 0.00 34.25 4.40
896 1014 4.382160 GCGGCGAATCTGAATTAGTAGTAC 59.618 45.833 12.98 0.00 0.00 2.73
897 1015 4.277672 AGCGGCGAATCTGAATTAGTAGTA 59.722 41.667 12.98 0.00 0.00 1.82
898 1016 3.068307 AGCGGCGAATCTGAATTAGTAGT 59.932 43.478 12.98 0.00 0.00 2.73
899 1017 3.643763 AGCGGCGAATCTGAATTAGTAG 58.356 45.455 12.98 0.00 0.00 2.57
902 1023 1.453524 CGAGCGGCGAATCTGAATTAG 59.546 52.381 12.98 0.00 44.57 1.73
1048 1208 3.087666 GCTTGAGGAGGCCGAGGAG 62.088 68.421 0.00 0.00 0.00 3.69
1102 1262 1.381327 GACCGATGGACTGGAGGGA 60.381 63.158 0.00 0.00 0.00 4.20
1117 1277 2.783288 CCGTTAGGGCTCGGAGACC 61.783 68.421 22.87 22.87 46.64 3.85
1277 1443 4.851214 GGAGCGGGAGGAGGAGCT 62.851 72.222 0.00 0.00 43.33 4.09
1846 2012 5.482908 ACTAGCAGAATCGAAATCAACACT 58.517 37.500 0.00 0.00 0.00 3.55
1850 2016 7.379797 CGAGATAACTAGCAGAATCGAAATCAA 59.620 37.037 0.00 0.00 0.00 2.57
1853 2019 6.153067 CCGAGATAACTAGCAGAATCGAAAT 58.847 40.000 8.35 0.00 0.00 2.17
1854 2020 5.067413 ACCGAGATAACTAGCAGAATCGAAA 59.933 40.000 8.35 0.00 0.00 3.46
1861 2027 2.359214 CAGCACCGAGATAACTAGCAGA 59.641 50.000 0.00 0.00 0.00 4.26
1867 2033 0.458543 CACGCAGCACCGAGATAACT 60.459 55.000 2.96 0.00 0.00 2.24
1873 2039 0.528466 ATCATACACGCAGCACCGAG 60.528 55.000 2.96 0.00 0.00 4.63
1887 2053 4.022329 TCGATTCGGAGCTAAGCAATCATA 60.022 41.667 6.18 0.00 0.00 2.15
1914 2080 2.620251 TGGATGAGTTAATGGCGAGG 57.380 50.000 0.00 0.00 0.00 4.63
1978 2154 3.843240 GAAAGACGAGCGGCGCTG 61.843 66.667 41.51 30.51 46.04 5.18
2014 2190 4.335647 ACCGGCAACCAGAGGCAG 62.336 66.667 0.00 0.00 0.00 4.85
2015 2191 4.641645 CACCGGCAACCAGAGGCA 62.642 66.667 0.00 0.00 0.00 4.75
2050 2226 2.223803 ATGGGTGGTTAATTCGCCAA 57.776 45.000 11.69 3.20 36.41 4.52
2166 2343 2.222027 CCTTTTCCAGGTGTGAGTCAC 58.778 52.381 16.68 16.68 45.47 3.67
2214 2394 4.023279 TCAGTGGTGTAACAATGCAATGTC 60.023 41.667 8.09 0.00 39.98 3.06
2218 2418 4.261952 CCAATCAGTGGTGTAACAATGCAA 60.262 41.667 0.00 0.00 43.20 4.08
2219 2419 3.255395 CCAATCAGTGGTGTAACAATGCA 59.745 43.478 0.00 0.00 43.20 3.96
2220 2420 3.836949 CCAATCAGTGGTGTAACAATGC 58.163 45.455 0.00 0.00 43.20 3.56
2249 2449 3.126858 GCGTACAAAAGGAATGCATCTGA 59.873 43.478 0.00 0.00 0.00 3.27
2278 2482 9.583765 GACGTATTAGTAAAACTGAAAGGATCT 57.416 33.333 0.00 0.00 39.30 2.75
2322 2526 9.939802 ACGTATTAGTAAAACTGAAAGGATCTT 57.060 29.630 0.00 0.00 39.30 2.40
2323 2527 9.583765 GACGTATTAGTAAAACTGAAAGGATCT 57.416 33.333 0.00 0.00 39.30 2.75
2324 2528 9.362539 TGACGTATTAGTAAAACTGAAAGGATC 57.637 33.333 0.00 0.00 39.30 3.36
2325 2529 9.715121 TTGACGTATTAGTAAAACTGAAAGGAT 57.285 29.630 0.00 0.00 39.30 3.24
2326 2530 8.981647 GTTGACGTATTAGTAAAACTGAAAGGA 58.018 33.333 0.00 0.00 39.30 3.36
2327 2531 8.225777 GGTTGACGTATTAGTAAAACTGAAAGG 58.774 37.037 0.00 0.00 39.30 3.11
2328 2532 8.985805 AGGTTGACGTATTAGTAAAACTGAAAG 58.014 33.333 0.00 0.00 31.49 2.62
2329 2533 8.891671 AGGTTGACGTATTAGTAAAACTGAAA 57.108 30.769 0.00 0.00 31.49 2.69
2330 2534 7.599998 GGAGGTTGACGTATTAGTAAAACTGAA 59.400 37.037 0.00 0.00 32.81 3.02
2331 2535 7.092716 GGAGGTTGACGTATTAGTAAAACTGA 58.907 38.462 0.00 0.00 32.81 3.41
2332 2536 6.869913 TGGAGGTTGACGTATTAGTAAAACTG 59.130 38.462 0.00 0.00 32.81 3.16
2333 2537 6.996509 TGGAGGTTGACGTATTAGTAAAACT 58.003 36.000 0.00 0.00 35.28 2.66
2334 2538 7.546667 TGATGGAGGTTGACGTATTAGTAAAAC 59.453 37.037 0.00 0.00 0.00 2.43
2347 2551 2.027745 TCTTGAGCTGATGGAGGTTGAC 60.028 50.000 0.00 0.00 30.42 3.18
2353 2557 1.598132 CGCAATCTTGAGCTGATGGAG 59.402 52.381 0.00 0.00 0.00 3.86
2447 2651 1.064906 CAGACCCATGTTGCTCAGGAT 60.065 52.381 0.00 0.00 0.00 3.24
2477 2681 4.803329 AAGATCATCCAAGCCATACCTT 57.197 40.909 0.00 0.00 0.00 3.50
2534 2739 1.800586 GCGAATTGACTGCTCAGTTCA 59.199 47.619 3.83 1.77 41.19 3.18
2535 2740 1.129437 GGCGAATTGACTGCTCAGTTC 59.871 52.381 3.83 2.26 42.66 3.01
2536 2741 1.160137 GGCGAATTGACTGCTCAGTT 58.840 50.000 3.83 0.00 42.66 3.16
2537 2742 0.674895 GGGCGAATTGACTGCTCAGT 60.675 55.000 1.62 1.62 45.84 3.41
2538 2743 1.699656 CGGGCGAATTGACTGCTCAG 61.700 60.000 0.00 0.00 0.00 3.35
2539 2744 1.741401 CGGGCGAATTGACTGCTCA 60.741 57.895 0.00 0.00 0.00 4.26
2540 2745 1.298859 AACGGGCGAATTGACTGCTC 61.299 55.000 0.00 0.00 34.06 4.26
2541 2746 1.298859 GAACGGGCGAATTGACTGCT 61.299 55.000 0.00 0.00 34.06 4.24
2542 2747 1.134694 GAACGGGCGAATTGACTGC 59.865 57.895 0.00 0.00 34.06 4.40
2543 2748 1.156736 AAGAACGGGCGAATTGACTG 58.843 50.000 0.00 0.00 38.29 3.51
2544 2749 2.754946 TAAGAACGGGCGAATTGACT 57.245 45.000 0.00 0.00 0.00 3.41
2545 2750 4.330620 TGTATTAAGAACGGGCGAATTGAC 59.669 41.667 0.00 0.00 0.00 3.18
2546 2751 4.505808 TGTATTAAGAACGGGCGAATTGA 58.494 39.130 0.00 0.00 0.00 2.57
2547 2752 4.260620 CCTGTATTAAGAACGGGCGAATTG 60.261 45.833 5.83 0.00 36.61 2.32
2548 2753 3.875134 CCTGTATTAAGAACGGGCGAATT 59.125 43.478 5.83 0.00 36.61 2.17
2549 2754 3.463944 CCTGTATTAAGAACGGGCGAAT 58.536 45.455 5.83 0.00 36.61 3.34
2550 2755 2.419021 CCCTGTATTAAGAACGGGCGAA 60.419 50.000 11.52 0.00 41.35 4.70
2551 2756 1.137479 CCCTGTATTAAGAACGGGCGA 59.863 52.381 11.52 0.00 41.35 5.54
2552 2757 1.578583 CCCTGTATTAAGAACGGGCG 58.421 55.000 11.52 3.96 41.35 6.13
2553 2758 1.487558 TCCCCTGTATTAAGAACGGGC 59.512 52.381 11.52 0.00 41.35 6.13
2554 2759 4.432980 AATCCCCTGTATTAAGAACGGG 57.567 45.455 10.42 10.42 42.18 5.28
2555 2760 7.005709 AGATAATCCCCTGTATTAAGAACGG 57.994 40.000 0.00 0.00 0.00 4.44
2556 2761 8.148351 TCAAGATAATCCCCTGTATTAAGAACG 58.852 37.037 0.00 0.00 0.00 3.95
2557 2762 9.495572 CTCAAGATAATCCCCTGTATTAAGAAC 57.504 37.037 0.00 0.00 0.00 3.01
2558 2763 9.447279 TCTCAAGATAATCCCCTGTATTAAGAA 57.553 33.333 0.00 0.00 0.00 2.52
2559 2764 9.621239 ATCTCAAGATAATCCCCTGTATTAAGA 57.379 33.333 0.00 0.00 32.01 2.10
2562 2767 9.494055 CCTATCTCAAGATAATCCCCTGTATTA 57.506 37.037 1.64 0.00 36.66 0.98
2563 2768 8.186985 TCCTATCTCAAGATAATCCCCTGTATT 58.813 37.037 1.64 0.00 36.66 1.89
2564 2769 7.723382 TCCTATCTCAAGATAATCCCCTGTAT 58.277 38.462 1.64 0.00 36.66 2.29
2565 2770 7.116089 TCCTATCTCAAGATAATCCCCTGTA 57.884 40.000 1.64 0.00 36.66 2.74
2566 2771 5.982391 TCCTATCTCAAGATAATCCCCTGT 58.018 41.667 1.64 0.00 36.66 4.00
2567 2772 6.942163 TTCCTATCTCAAGATAATCCCCTG 57.058 41.667 1.64 0.00 36.66 4.45
2568 2773 8.531362 AATTTCCTATCTCAAGATAATCCCCT 57.469 34.615 1.64 0.00 36.66 4.79
2581 2786 8.987890 GCTCAGTTCAGATAAATTTCCTATCTC 58.012 37.037 0.00 0.00 34.53 2.75
2582 2787 8.489489 TGCTCAGTTCAGATAAATTTCCTATCT 58.511 33.333 0.00 0.00 36.71 1.98
2583 2788 8.668510 TGCTCAGTTCAGATAAATTTCCTATC 57.331 34.615 0.00 0.00 0.00 2.08
2584 2789 7.228308 GCTGCTCAGTTCAGATAAATTTCCTAT 59.772 37.037 0.00 0.00 33.54 2.57
2585 2790 6.540189 GCTGCTCAGTTCAGATAAATTTCCTA 59.460 38.462 0.00 0.00 33.54 2.94
2586 2791 5.356470 GCTGCTCAGTTCAGATAAATTTCCT 59.644 40.000 0.00 0.00 33.54 3.36
2587 2792 5.124457 TGCTGCTCAGTTCAGATAAATTTCC 59.876 40.000 0.00 0.00 33.54 3.13
2588 2793 6.187125 TGCTGCTCAGTTCAGATAAATTTC 57.813 37.500 0.00 0.00 33.54 2.17
2589 2794 6.770746 ATGCTGCTCAGTTCAGATAAATTT 57.229 33.333 0.00 0.00 33.54 1.82
2590 2795 7.870509 TTATGCTGCTCAGTTCAGATAAATT 57.129 32.000 0.00 0.00 33.54 1.82
2591 2796 7.337689 TGTTTATGCTGCTCAGTTCAGATAAAT 59.662 33.333 0.00 0.00 32.74 1.40
2592 2797 6.654582 TGTTTATGCTGCTCAGTTCAGATAAA 59.345 34.615 0.00 0.00 33.54 1.40
2593 2798 6.172630 TGTTTATGCTGCTCAGTTCAGATAA 58.827 36.000 0.00 0.00 33.54 1.75
2594 2799 5.733676 TGTTTATGCTGCTCAGTTCAGATA 58.266 37.500 0.00 0.00 33.54 1.98
2595 2800 4.582869 TGTTTATGCTGCTCAGTTCAGAT 58.417 39.130 0.00 0.00 33.54 2.90
2596 2801 4.006780 TGTTTATGCTGCTCAGTTCAGA 57.993 40.909 0.00 0.00 33.54 3.27
2597 2802 4.754372 TTGTTTATGCTGCTCAGTTCAG 57.246 40.909 0.00 0.00 34.79 3.02
2618 2823 2.568623 AAGACCAGGCGAATTGACTT 57.431 45.000 0.00 0.00 27.82 3.01
2627 2832 3.469008 TCCATGTATTAAGACCAGGCG 57.531 47.619 0.00 0.00 0.00 5.52
2663 2868 6.939163 ACAAGAAATGCAGTCAGATAACTTCT 59.061 34.615 0.00 0.00 33.90 2.85
2664 2869 7.118971 AGACAAGAAATGCAGTCAGATAACTTC 59.881 37.037 4.57 0.00 33.56 3.01
2667 2872 6.541086 CAGACAAGAAATGCAGTCAGATAAC 58.459 40.000 4.57 0.00 33.56 1.89
2726 2931 2.243221 AGTGGCCCAAGAATAGATTGCT 59.757 45.455 0.00 0.00 0.00 3.91
2729 2934 4.166725 TCATCAGTGGCCCAAGAATAGATT 59.833 41.667 0.00 0.00 0.00 2.40
2798 3003 3.094484 AGTGATCTTCGGAGAGGTTCT 57.906 47.619 0.00 0.00 38.43 3.01
2829 3034 6.605849 TCAAAAGAAATCGAGAAATCAGCAG 58.394 36.000 0.00 0.00 0.00 4.24
2851 3056 5.569355 TGAAGCAATACTCAATCCCTTTCA 58.431 37.500 0.00 0.00 0.00 2.69
2926 3131 2.632377 TCCGATGCTTCCTGATGAAAC 58.368 47.619 0.00 0.00 31.06 2.78
3027 3232 7.766278 GGTCACTGATTCTGTATATGAAACTGT 59.234 37.037 0.00 0.00 32.10 3.55
3038 3243 6.483307 CAGTTTTCAAGGTCACTGATTCTGTA 59.517 38.462 0.00 0.00 39.25 2.74
3064 3269 1.338973 GGACTGTGTCTCCGTACAACA 59.661 52.381 0.00 0.00 32.47 3.33
3070 3275 0.111832 TACCAGGACTGTGTCTCCGT 59.888 55.000 0.00 0.00 32.45 4.69
3073 3278 2.494073 CTCCTTACCAGGACTGTGTCTC 59.506 54.545 0.00 0.00 45.20 3.36
3077 3282 0.250513 GCCTCCTTACCAGGACTGTG 59.749 60.000 0.00 0.00 45.20 3.66
3099 3304 7.839907 ACTAATAGATGATTCCTGCTCTCATC 58.160 38.462 0.00 4.07 43.57 2.92
3136 3341 8.035984 TGACCGTGTTGTCTAATGATAAACATA 58.964 33.333 0.00 0.00 35.83 2.29
3146 3351 5.794894 AGAAAGATGACCGTGTTGTCTAAT 58.205 37.500 0.00 0.00 36.21 1.73
3251 3492 2.867099 TGGGAGTACTAACCCTGGGATA 59.133 50.000 22.23 11.60 45.74 2.59
3259 3500 8.648693 ACAACTCATTATATGGGAGTACTAACC 58.351 37.037 8.76 8.76 40.80 2.85
3316 3558 5.624052 GCTGTTAGGGGTCTTAGTGTTAGAC 60.624 48.000 0.00 0.00 41.00 2.59
3337 3583 4.031418 TGCATTCCGAACATTTATGCTG 57.969 40.909 0.00 0.00 41.53 4.41
3433 3679 3.059352 ACTCTGAACACCAATACAGCC 57.941 47.619 0.00 0.00 0.00 4.85
3517 3763 4.640201 ACCTGACAATATGGAAAACCATCG 59.360 41.667 4.98 0.00 0.00 3.84
3545 3791 7.116233 GTCAAAGGTGGCTTGTGTAAATAATTG 59.884 37.037 0.00 0.00 0.00 2.32
3556 3802 3.788227 TCATAGTCAAAGGTGGCTTGT 57.212 42.857 0.00 0.00 35.70 3.16
3559 3805 6.662755 TGAATATTCATAGTCAAAGGTGGCT 58.337 36.000 14.23 0.00 36.48 4.75
3591 3837 5.107104 CGTTCTGTTGTATGCTGTTGTATGT 60.107 40.000 0.00 0.00 0.00 2.29
3614 3860 3.730715 GTCAAAAGAAAGCACCACATTCG 59.269 43.478 0.00 0.00 0.00 3.34
3779 4025 2.945008 GCACCTGCATATCTGTTTAGCA 59.055 45.455 0.00 0.00 41.59 3.49
3806 4052 2.615493 GGTAACATCATCTATGGGGCGG 60.615 54.545 0.00 0.00 40.16 6.13
3833 4079 2.535588 GCACAGCCATTTTGCCTTG 58.464 52.632 0.00 0.00 0.00 3.61
4099 4345 3.119743 CCTGCCAACACACATTATCACAG 60.120 47.826 0.00 0.00 0.00 3.66
4266 4512 7.809665 TGCACATCTGATGTATATTGCAATAC 58.190 34.615 22.68 12.88 42.70 1.89
4330 4576 2.416547 CAGACCATAGAAAACTGCACGG 59.583 50.000 0.00 0.00 0.00 4.94
4372 4618 0.900182 AGCACACGAGTCCCTGATCA 60.900 55.000 0.00 0.00 0.00 2.92
4397 4643 0.030101 ATTGTTTCGGTGTTGCACGG 59.970 50.000 0.00 1.18 34.83 4.94
4408 4654 7.558137 CAAGAGTTCCAATTTTCATTGTTTCG 58.442 34.615 0.00 0.00 38.58 3.46
4459 4705 2.095059 CAGAAGCATTGGTCCCTTTTCG 60.095 50.000 0.00 0.00 0.00 3.46
4487 4733 5.277538 GCGATAATTCAGGGAATGTTGACTC 60.278 44.000 0.00 0.00 32.14 3.36
4493 4739 7.554118 CCTATATTGCGATAATTCAGGGAATGT 59.446 37.037 0.00 0.00 32.14 2.71
4494 4740 7.012704 CCCTATATTGCGATAATTCAGGGAATG 59.987 40.741 19.50 2.80 42.40 2.67
4495 4741 7.056635 CCCTATATTGCGATAATTCAGGGAAT 58.943 38.462 19.50 0.00 42.40 3.01
4497 4743 5.487488 ACCCTATATTGCGATAATTCAGGGA 59.513 40.000 25.72 0.00 42.40 4.20
4503 4749 5.181245 GCACACACCCTATATTGCGATAATT 59.819 40.000 0.00 0.00 0.00 1.40
4504 4750 4.695455 GCACACACCCTATATTGCGATAAT 59.305 41.667 0.00 0.00 0.00 1.28
4515 4761 4.692228 CAAAAACAAAGCACACACCCTAT 58.308 39.130 0.00 0.00 0.00 2.57
4518 4764 1.396648 GCAAAAACAAAGCACACACCC 59.603 47.619 0.00 0.00 0.00 4.61
4519 4765 2.345876 AGCAAAAACAAAGCACACACC 58.654 42.857 0.00 0.00 0.00 4.16
4520 4766 3.424697 CCAAGCAAAAACAAAGCACACAC 60.425 43.478 0.00 0.00 0.00 3.82
4522 4768 2.476018 GCCAAGCAAAAACAAAGCACAC 60.476 45.455 0.00 0.00 0.00 3.82
4534 4786 0.407528 TACCATCAGGGCCAAGCAAA 59.592 50.000 6.18 0.00 42.05 3.68
4544 4796 2.947652 CAAGCATGTTCCTACCATCAGG 59.052 50.000 0.00 0.00 42.21 3.86
4562 4814 0.801251 GCAAGCCTCTACAGCACAAG 59.199 55.000 0.00 0.00 0.00 3.16
4720 4973 0.689080 AACCCAATGGCAACCACACA 60.689 50.000 0.00 0.00 35.80 3.72
4793 5049 5.420409 GTGTAGAGGGTTGTATTCCTTCAG 58.580 45.833 0.00 0.00 34.19 3.02
4927 5191 5.532557 AGCAAGTAAGAACTCAAAAATGGC 58.467 37.500 0.00 0.00 33.75 4.40
5025 5324 1.607178 CTGGGGCAATTGACCTGCA 60.607 57.895 29.39 18.54 44.77 4.41
5056 5355 0.962356 GTCAAGGTGGGTGGCATCAG 60.962 60.000 0.00 0.00 0.00 2.90
5093 5392 1.312815 GACCCTGCAATGCTGGTATC 58.687 55.000 25.77 19.43 44.45 2.24
5195 5494 1.003839 AACTCGGAAAGGCGATGCA 60.004 52.632 0.00 0.00 0.00 3.96
5229 5528 4.052518 CTCCCTGGGTTGGCTGGG 62.053 72.222 13.56 0.00 40.95 4.45
5230 5529 2.490270 CTTCTCCCTGGGTTGGCTGG 62.490 65.000 13.56 0.00 0.00 4.85
5231 5530 1.001641 CTTCTCCCTGGGTTGGCTG 60.002 63.158 13.56 0.00 0.00 4.85
5232 5531 0.772124 TTCTTCTCCCTGGGTTGGCT 60.772 55.000 13.56 0.00 0.00 4.75
5233 5532 0.322906 CTTCTTCTCCCTGGGTTGGC 60.323 60.000 13.56 0.00 0.00 4.52
5234 5533 0.322906 GCTTCTTCTCCCTGGGTTGG 60.323 60.000 13.56 4.77 0.00 3.77
5235 5534 0.695347 AGCTTCTTCTCCCTGGGTTG 59.305 55.000 13.56 7.37 0.00 3.77
5236 5535 0.988063 GAGCTTCTTCTCCCTGGGTT 59.012 55.000 13.56 0.00 0.00 4.11
5237 5536 0.912006 GGAGCTTCTTCTCCCTGGGT 60.912 60.000 13.56 0.00 45.40 4.51
5238 5537 1.911471 GGAGCTTCTTCTCCCTGGG 59.089 63.158 6.33 6.33 45.40 4.45
5253 5552 4.479993 CTTGGGCTGGCTCGGGAG 62.480 72.222 0.00 0.00 0.00 4.30
5432 5761 3.160047 AGCCGCTCCAGGATCCTG 61.160 66.667 31.69 31.69 43.26 3.86
5582 5917 2.814336 CCTGTTGAAGGTAGGTTTCAGC 59.186 50.000 0.00 0.00 41.74 4.26
5618 5953 3.082548 TGAACTGGAGGTCTAAGAGACG 58.917 50.000 0.73 0.00 45.96 4.18
5621 5956 4.157656 CAGAGTGAACTGGAGGTCTAAGAG 59.842 50.000 0.00 0.00 34.64 2.85
5622 5957 4.082845 CAGAGTGAACTGGAGGTCTAAGA 58.917 47.826 0.00 0.00 34.64 2.10
5628 5963 0.972883 GAGCAGAGTGAACTGGAGGT 59.027 55.000 0.00 0.00 38.22 3.85
5629 5964 1.067000 CAGAGCAGAGTGAACTGGAGG 60.067 57.143 0.00 0.00 38.22 4.30
5647 5982 5.124645 AGAAGGCTCTTGATTAATCTGCAG 58.875 41.667 16.24 7.63 0.00 4.41
5659 5994 5.652994 ACTAGTGAAGTAGAAGGCTCTTG 57.347 43.478 0.00 0.00 36.36 3.02
5664 5999 6.921914 TGAAGTAACTAGTGAAGTAGAAGGC 58.078 40.000 0.00 0.00 37.50 4.35
5696 6223 3.928754 TCATTCTAGGGCTACACTGGAT 58.071 45.455 0.00 0.00 0.00 3.41
5735 6262 9.214953 GAGCTTCATATTAACAATTTGAGAACG 57.785 33.333 2.79 0.00 31.93 3.95
5741 6268 7.398746 TCGTCGAGCTTCATATTAACAATTTG 58.601 34.615 0.00 0.00 0.00 2.32
5749 6278 7.645402 TCAACTTATCGTCGAGCTTCATATTA 58.355 34.615 0.00 0.00 0.00 0.98
5775 6304 8.596293 TGCCAGTGTCTCATGATATATCATTTA 58.404 33.333 22.97 14.23 44.70 1.40
5779 6308 6.616237 ATGCCAGTGTCTCATGATATATCA 57.384 37.500 17.56 17.56 41.70 2.15
5786 6315 4.002982 GTGTTAATGCCAGTGTCTCATGA 58.997 43.478 0.00 0.00 0.00 3.07
5789 6318 2.412870 CGTGTTAATGCCAGTGTCTCA 58.587 47.619 0.00 0.00 0.00 3.27
5792 6321 0.871722 TGCGTGTTAATGCCAGTGTC 59.128 50.000 0.00 0.00 37.53 3.67
5793 6322 0.874390 CTGCGTGTTAATGCCAGTGT 59.126 50.000 0.00 0.00 37.53 3.55
5799 6328 7.406553 TCTATGTATTTTCTGCGTGTTAATGC 58.593 34.615 0.00 0.00 38.92 3.56
5803 6332 8.600625 GTTCATCTATGTATTTTCTGCGTGTTA 58.399 33.333 0.00 0.00 0.00 2.41
5808 6337 6.018425 AGCTGTTCATCTATGTATTTTCTGCG 60.018 38.462 0.00 0.00 0.00 5.18
5809 6338 7.256756 AGCTGTTCATCTATGTATTTTCTGC 57.743 36.000 0.00 0.00 0.00 4.26
5814 6343 9.539825 CAGTAGAAGCTGTTCATCTATGTATTT 57.460 33.333 0.00 0.00 34.82 1.40
5826 6355 3.510360 TGTCTACCCAGTAGAAGCTGTTC 59.490 47.826 6.05 0.00 45.12 3.18
5841 6370 6.373779 CAACATGAATTGTTCAGTGTCTACC 58.626 40.000 0.00 0.00 45.55 3.18
5849 6380 4.304110 AGCAAGCAACATGAATTGTTCAG 58.696 39.130 0.00 0.00 45.55 3.02
5958 6490 1.062810 GGGAGAGTGAGGGTACTGGAT 60.063 57.143 0.00 0.00 0.00 3.41
5964 6496 4.117632 AGTACTTAGGGAGAGTGAGGGTA 58.882 47.826 0.00 0.00 0.00 3.69
5970 6502 2.168728 GGGCAAGTACTTAGGGAGAGTG 59.831 54.545 8.04 0.00 0.00 3.51
6023 6555 1.846124 TGGAGTGACCCAAGACCCC 60.846 63.158 0.00 0.00 38.00 4.95
6026 6558 1.668151 GCGTGGAGTGACCCAAGAC 60.668 63.158 9.41 0.00 37.81 3.01
6046 6578 3.876914 CCATTAGGTAGCGCATTTCTTGA 59.123 43.478 11.47 0.00 0.00 3.02
6377 6914 4.144297 GGCAGACTATATTTGAATGGGCA 58.856 43.478 0.00 0.00 0.00 5.36
6386 6923 3.668447 CGCAGGATGGCAGACTATATTT 58.332 45.455 0.00 0.00 35.86 1.40
6404 6941 2.032634 GCAGTCCGTTGAATCCGCA 61.033 57.895 0.00 0.00 0.00 5.69
6407 6944 1.741770 AGCGCAGTCCGTTGAATCC 60.742 57.895 11.47 0.00 39.71 3.01
6479 7016 2.604046 ACGAGCTGACAACAAAGAGT 57.396 45.000 0.00 0.00 0.00 3.24
6521 7058 1.779569 CGGCAACATACGGATACCTC 58.220 55.000 0.00 0.00 0.00 3.85
6572 7109 1.391157 GGCTGTCCAAGTTTGTGCCA 61.391 55.000 0.00 0.00 38.79 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.