Multiple sequence alignment - TraesCS3B01G092400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G092400 chr3B 100.000 3832 0 0 1 3832 61552155 61555986 0.000000e+00 7077.0
1 TraesCS3B01G092400 chr3A 95.822 2896 106 3 937 3832 49973862 49976742 0.000000e+00 4663.0
2 TraesCS3B01G092400 chr3A 80.240 167 18 12 526 683 131455286 131455126 1.130000e-20 111.0
3 TraesCS3B01G092400 chr3D 95.964 2651 97 7 1184 3832 38742529 38745171 0.000000e+00 4294.0
4 TraesCS3B01G092400 chr3D 82.927 123 16 3 952 1069 38742276 38742398 5.240000e-19 106.0
5 TraesCS3B01G092400 chr7D 89.199 287 18 6 3550 3832 14801971 14801694 2.830000e-91 346.0
6 TraesCS3B01G092400 chrUn 99.231 130 1 0 3703 3832 34721658 34721787 6.400000e-58 235.0
7 TraesCS3B01G092400 chr4B 99.231 130 1 0 3703 3832 71555624 71555495 6.400000e-58 235.0
8 TraesCS3B01G092400 chr4B 96.154 130 5 0 3703 3832 623930274 623930145 3.000000e-51 213.0
9 TraesCS3B01G092400 chr4B 74.359 390 53 27 411 783 653960653 653961012 5.200000e-24 122.0
10 TraesCS3B01G092400 chr2B 99.231 130 1 0 3703 3832 741894612 741894741 6.400000e-58 235.0
11 TraesCS3B01G092400 chr2B 77.647 170 28 9 519 683 665664254 665664090 1.130000e-15 95.3
12 TraesCS3B01G092400 chr1B 98.462 130 2 0 3703 3832 538504073 538504202 2.980000e-56 230.0
13 TraesCS3B01G092400 chr1B 75.325 385 53 22 411 775 345333458 345333820 3.080000e-31 147.0
14 TraesCS3B01G092400 chr1D 77.891 294 42 20 411 688 267759112 267758826 1.100000e-35 161.0
15 TraesCS3B01G092400 chr2A 76.012 346 51 23 365 688 136063895 136064230 2.380000e-32 150.0
16 TraesCS3B01G092400 chr2D 80.460 174 25 9 514 683 50466388 50466220 1.450000e-24 124.0
17 TraesCS3B01G092400 chr2D 79.006 181 25 9 514 686 462190749 462190574 1.130000e-20 111.0
18 TraesCS3B01G092400 chr1A 79.268 164 20 13 519 677 278232818 278232972 6.770000e-18 102.0
19 TraesCS3B01G092400 chr6D 80.137 146 18 8 544 681 2195540 2195682 8.760000e-17 99.0
20 TraesCS3B01G092400 chr5D 79.856 139 16 11 551 683 225638677 225638545 1.470000e-14 91.6
21 TraesCS3B01G092400 chr7A 78.667 150 20 11 541 683 81608019 81607875 5.270000e-14 89.8
22 TraesCS3B01G092400 chr7B 84.615 91 8 6 551 639 736162112 736162026 6.820000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G092400 chr3B 61552155 61555986 3831 False 7077 7077 100.0000 1 3832 1 chr3B.!!$F1 3831
1 TraesCS3B01G092400 chr3A 49973862 49976742 2880 False 4663 4663 95.8220 937 3832 1 chr3A.!!$F1 2895
2 TraesCS3B01G092400 chr3D 38742276 38745171 2895 False 2200 4294 89.4455 952 3832 2 chr3D.!!$F1 2880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 694 0.035056 CAAAACCGGGATGGAGAGCT 60.035 55.0 6.32 0.0 42.0 4.09 F
1282 1335 0.031994 ACATTTTTGTGCGCAGTCCC 59.968 50.0 12.22 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2116 1.053424 TGAACAGGTCCGGCTTAAGT 58.947 50.000 4.02 0.0 0.0 2.24 R
2896 2949 3.254166 CCAAGGTTGAAAGTCACTGGATG 59.746 47.826 0.00 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.554395 AAACGAATTTGAAAATAGGGACATTTT 57.446 25.926 0.00 0.00 40.06 1.82
66 67 9.554395 AACGAATTTGAAAATAGGGACATTTTT 57.446 25.926 0.00 0.00 38.04 1.94
88 89 7.864307 TTTTGAAGTTTGCCAACAATTTTTG 57.136 28.000 3.22 0.00 35.21 2.44
95 96 6.331369 TTTGCCAACAATTTTTGGAAAACA 57.669 29.167 24.42 11.39 45.67 2.83
96 97 6.385033 TTTGCCAACAATTTTTGGAAAACAG 58.615 32.000 24.42 0.00 45.67 3.16
97 98 6.571150 TTTGCCAACAATTTTTGGAAAACAGG 60.571 34.615 24.42 0.00 45.67 4.00
98 99 8.658992 TTTGCCAACAATTTTTGGAAAACAGGA 61.659 33.333 24.42 4.69 45.67 3.86
101 102 7.138692 CAACAATTTTTGGAAAACAGGAACA 57.861 32.000 0.00 0.00 34.12 3.18
102 103 6.735678 ACAATTTTTGGAAAACAGGAACAC 57.264 33.333 0.00 0.00 34.12 3.32
103 104 5.350091 ACAATTTTTGGAAAACAGGAACACG 59.650 36.000 0.00 0.00 34.12 4.49
104 105 4.522722 TTTTTGGAAAACAGGAACACGT 57.477 36.364 0.00 0.00 0.00 4.49
105 106 4.522722 TTTTGGAAAACAGGAACACGTT 57.477 36.364 0.00 0.00 0.00 3.99
106 107 4.522722 TTTGGAAAACAGGAACACGTTT 57.477 36.364 0.00 0.00 36.92 3.60
107 108 4.522722 TTGGAAAACAGGAACACGTTTT 57.477 36.364 0.00 0.00 45.46 2.43
108 109 3.839293 TGGAAAACAGGAACACGTTTTG 58.161 40.909 5.09 0.00 43.46 2.44
109 110 3.183754 GGAAAACAGGAACACGTTTTGG 58.816 45.455 5.09 0.00 43.46 3.28
110 111 3.119424 GGAAAACAGGAACACGTTTTGGA 60.119 43.478 5.09 0.00 43.46 3.53
111 112 4.487019 GAAAACAGGAACACGTTTTGGAA 58.513 39.130 5.09 0.00 43.46 3.53
112 113 3.497297 AACAGGAACACGTTTTGGAAC 57.503 42.857 0.00 0.00 0.00 3.62
113 114 1.746787 ACAGGAACACGTTTTGGAACC 59.253 47.619 0.00 0.00 31.93 3.62
114 115 1.746220 CAGGAACACGTTTTGGAACCA 59.254 47.619 0.00 0.00 31.93 3.67
115 116 1.746787 AGGAACACGTTTTGGAACCAC 59.253 47.619 0.00 0.00 31.93 4.16
116 117 1.473278 GGAACACGTTTTGGAACCACA 59.527 47.619 0.00 0.00 31.93 4.17
117 118 2.094649 GGAACACGTTTTGGAACCACAA 60.095 45.455 0.00 0.00 31.93 3.33
118 119 2.931512 ACACGTTTTGGAACCACAAG 57.068 45.000 0.00 0.00 31.93 3.16
119 120 2.438411 ACACGTTTTGGAACCACAAGA 58.562 42.857 0.00 0.00 31.93 3.02
120 121 2.422127 ACACGTTTTGGAACCACAAGAG 59.578 45.455 0.00 0.00 31.93 2.85
121 122 2.422127 CACGTTTTGGAACCACAAGAGT 59.578 45.455 0.00 0.00 31.93 3.24
122 123 3.086282 ACGTTTTGGAACCACAAGAGTT 58.914 40.909 0.00 0.00 31.93 3.01
123 124 3.508402 ACGTTTTGGAACCACAAGAGTTT 59.492 39.130 0.00 0.00 31.93 2.66
124 125 4.021807 ACGTTTTGGAACCACAAGAGTTTT 60.022 37.500 0.00 0.00 31.93 2.43
125 126 4.926832 CGTTTTGGAACCACAAGAGTTTTT 59.073 37.500 0.00 0.00 31.93 1.94
186 187 6.734104 TTTGAAAGTGTGAACAATTTTGGG 57.266 33.333 9.90 0.00 43.10 4.12
187 188 5.667539 TGAAAGTGTGAACAATTTTGGGA 57.332 34.783 9.90 0.00 43.10 4.37
188 189 6.042638 TGAAAGTGTGAACAATTTTGGGAA 57.957 33.333 9.90 0.00 43.10 3.97
189 190 6.467677 TGAAAGTGTGAACAATTTTGGGAAA 58.532 32.000 9.90 0.00 43.10 3.13
190 191 6.370166 TGAAAGTGTGAACAATTTTGGGAAAC 59.630 34.615 9.90 0.00 43.10 2.78
191 192 5.413309 AGTGTGAACAATTTTGGGAAACA 57.587 34.783 0.00 0.00 0.00 2.83
192 193 5.988287 AGTGTGAACAATTTTGGGAAACAT 58.012 33.333 0.00 0.00 0.00 2.71
193 194 5.816777 AGTGTGAACAATTTTGGGAAACATG 59.183 36.000 0.00 0.00 0.00 3.21
194 195 5.814705 GTGTGAACAATTTTGGGAAACATGA 59.185 36.000 0.00 0.00 0.00 3.07
195 196 6.314896 GTGTGAACAATTTTGGGAAACATGAA 59.685 34.615 0.00 0.00 0.00 2.57
196 197 6.314896 TGTGAACAATTTTGGGAAACATGAAC 59.685 34.615 0.00 0.00 0.00 3.18
197 198 6.314896 GTGAACAATTTTGGGAAACATGAACA 59.685 34.615 0.00 0.00 0.00 3.18
198 199 7.012232 GTGAACAATTTTGGGAAACATGAACAT 59.988 33.333 0.00 0.00 0.00 2.71
199 200 7.555554 TGAACAATTTTGGGAAACATGAACATT 59.444 29.630 0.00 0.00 0.00 2.71
200 201 7.878547 ACAATTTTGGGAAACATGAACATTT 57.121 28.000 0.00 0.00 0.00 2.32
201 202 8.291191 ACAATTTTGGGAAACATGAACATTTT 57.709 26.923 0.00 0.00 0.00 1.82
202 203 8.404765 ACAATTTTGGGAAACATGAACATTTTC 58.595 29.630 0.00 0.00 0.00 2.29
203 204 8.623030 CAATTTTGGGAAACATGAACATTTTCT 58.377 29.630 0.00 0.00 32.36 2.52
204 205 7.551035 TTTTGGGAAACATGAACATTTTCTG 57.449 32.000 0.00 0.00 32.36 3.02
205 206 6.477053 TTGGGAAACATGAACATTTTCTGA 57.523 33.333 0.00 0.00 32.36 3.27
206 207 6.477053 TGGGAAACATGAACATTTTCTGAA 57.523 33.333 0.00 0.00 32.36 3.02
207 208 6.882656 TGGGAAACATGAACATTTTCTGAAA 58.117 32.000 0.00 0.00 32.36 2.69
208 209 7.334090 TGGGAAACATGAACATTTTCTGAAAA 58.666 30.769 17.04 17.04 32.36 2.29
209 210 7.279758 TGGGAAACATGAACATTTTCTGAAAAC 59.720 33.333 17.06 6.07 32.37 2.43
210 211 7.336975 GGAAACATGAACATTTTCTGAAAACG 58.663 34.615 17.06 12.15 32.37 3.60
211 212 7.221838 GGAAACATGAACATTTTCTGAAAACGA 59.778 33.333 17.06 0.00 32.37 3.85
212 213 7.684062 AACATGAACATTTTCTGAAAACGAG 57.316 32.000 17.06 12.42 32.37 4.18
213 214 7.026631 ACATGAACATTTTCTGAAAACGAGA 57.973 32.000 17.06 2.54 32.37 4.04
214 215 7.479980 ACATGAACATTTTCTGAAAACGAGAA 58.520 30.769 17.06 5.07 32.37 2.87
215 216 7.432252 ACATGAACATTTTCTGAAAACGAGAAC 59.568 33.333 17.06 8.18 32.37 3.01
216 217 6.847400 TGAACATTTTCTGAAAACGAGAACA 58.153 32.000 17.06 10.24 32.37 3.18
217 218 7.479980 TGAACATTTTCTGAAAACGAGAACAT 58.520 30.769 17.06 0.00 32.37 2.71
218 219 8.616942 TGAACATTTTCTGAAAACGAGAACATA 58.383 29.630 17.06 0.00 32.37 2.29
219 220 9.612620 GAACATTTTCTGAAAACGAGAACATAT 57.387 29.630 17.06 0.00 32.37 1.78
220 221 9.965824 AACATTTTCTGAAAACGAGAACATATT 57.034 25.926 17.06 0.00 32.37 1.28
221 222 9.965824 ACATTTTCTGAAAACGAGAACATATTT 57.034 25.926 17.06 0.00 32.37 1.40
231 232 9.862585 AAAACGAGAACATATTTTGAAATTTGC 57.137 25.926 0.00 0.00 32.71 3.68
232 233 8.586570 AACGAGAACATATTTTGAAATTTGCA 57.413 26.923 0.00 0.00 32.71 4.08
233 234 8.586570 ACGAGAACATATTTTGAAATTTGCAA 57.413 26.923 0.00 0.00 32.71 4.08
234 235 9.039870 ACGAGAACATATTTTGAAATTTGCAAA 57.960 25.926 15.44 15.44 32.71 3.68
251 252 9.598517 AATTTGCAAATAGTTTCTCAAAACAGA 57.401 25.926 24.35 0.00 45.94 3.41
252 253 8.994429 TTTGCAAATAGTTTCTCAAAACAGAA 57.006 26.923 8.05 0.00 45.94 3.02
253 254 8.633075 TTGCAAATAGTTTCTCAAAACAGAAG 57.367 30.769 0.00 0.00 45.94 2.85
254 255 6.697019 TGCAAATAGTTTCTCAAAACAGAAGC 59.303 34.615 4.09 0.00 45.94 3.86
255 256 6.697019 GCAAATAGTTTCTCAAAACAGAAGCA 59.303 34.615 4.09 0.00 45.94 3.91
256 257 7.222611 GCAAATAGTTTCTCAAAACAGAAGCAA 59.777 33.333 4.09 0.00 45.94 3.91
257 258 9.252962 CAAATAGTTTCTCAAAACAGAAGCAAT 57.747 29.630 4.09 0.00 45.94 3.56
258 259 8.807667 AATAGTTTCTCAAAACAGAAGCAATG 57.192 30.769 4.09 0.00 45.94 2.82
259 260 6.212888 AGTTTCTCAAAACAGAAGCAATGT 57.787 33.333 4.09 0.00 45.94 2.71
260 261 6.633856 AGTTTCTCAAAACAGAAGCAATGTT 58.366 32.000 4.09 0.00 45.94 2.71
265 266 5.811613 CTCAAAACAGAAGCAATGTTTGGAA 59.188 36.000 15.26 5.74 45.41 3.53
266 267 6.313411 CTCAAAACAGAAGCAATGTTTGGAAA 59.687 34.615 15.26 1.05 45.41 3.13
267 268 7.674705 CTCAAAACAGAAGCAATGTTTGGAAAC 60.675 37.037 15.26 0.00 45.41 2.78
268 269 5.343307 AACAGAAGCAATGTTTGGAAACT 57.657 34.783 4.02 0.00 37.61 2.66
269 270 4.936891 ACAGAAGCAATGTTTGGAAACTC 58.063 39.130 4.02 0.00 39.59 3.01
270 271 4.402155 ACAGAAGCAATGTTTGGAAACTCA 59.598 37.500 4.02 0.00 39.59 3.41
271 272 5.105392 ACAGAAGCAATGTTTGGAAACTCAA 60.105 36.000 4.02 0.00 39.59 3.02
272 273 5.811613 CAGAAGCAATGTTTGGAAACTCAAA 59.188 36.000 4.02 0.00 39.59 2.69
273 274 6.313411 CAGAAGCAATGTTTGGAAACTCAAAA 59.687 34.615 4.02 0.00 38.21 2.44
274 275 6.536224 AGAAGCAATGTTTGGAAACTCAAAAG 59.464 34.615 4.02 0.00 38.21 2.27
275 276 5.733676 AGCAATGTTTGGAAACTCAAAAGT 58.266 33.333 4.02 0.00 38.21 2.66
300 301 7.787823 TTTTTGAAAAGGCGAACAATTTTTG 57.212 28.000 0.00 0.00 0.00 2.44
301 302 6.727824 TTTGAAAAGGCGAACAATTTTTGA 57.272 29.167 0.00 0.00 0.00 2.69
302 303 6.727824 TTGAAAAGGCGAACAATTTTTGAA 57.272 29.167 0.00 0.00 0.00 2.69
303 304 6.727824 TGAAAAGGCGAACAATTTTTGAAA 57.272 29.167 0.00 0.00 0.00 2.69
304 305 6.538444 TGAAAAGGCGAACAATTTTTGAAAC 58.462 32.000 0.00 0.00 0.00 2.78
305 306 5.478233 AAAGGCGAACAATTTTTGAAACC 57.522 34.783 0.00 0.00 0.00 3.27
306 307 4.130286 AGGCGAACAATTTTTGAAACCA 57.870 36.364 0.00 0.00 0.00 3.67
307 308 4.702831 AGGCGAACAATTTTTGAAACCAT 58.297 34.783 0.00 0.00 0.00 3.55
308 309 4.511082 AGGCGAACAATTTTTGAAACCATG 59.489 37.500 0.00 0.00 0.00 3.66
309 310 4.319405 GGCGAACAATTTTTGAAACCATGG 60.319 41.667 11.19 11.19 0.00 3.66
310 311 4.509600 GCGAACAATTTTTGAAACCATGGA 59.490 37.500 21.47 0.00 0.00 3.41
311 312 5.007136 GCGAACAATTTTTGAAACCATGGAA 59.993 36.000 21.47 0.00 0.00 3.53
312 313 6.418141 CGAACAATTTTTGAAACCATGGAAC 58.582 36.000 21.47 9.58 0.00 3.62
375 376 7.841915 TTTTTGGGAAAGAGAAAATGTGAAC 57.158 32.000 0.00 0.00 0.00 3.18
376 377 6.537453 TTTGGGAAAGAGAAAATGTGAACA 57.463 33.333 0.00 0.00 0.00 3.18
377 378 6.537453 TTGGGAAAGAGAAAATGTGAACAA 57.463 33.333 0.00 0.00 0.00 2.83
378 379 6.729690 TGGGAAAGAGAAAATGTGAACAAT 57.270 33.333 0.00 0.00 0.00 2.71
379 380 7.123355 TGGGAAAGAGAAAATGTGAACAATT 57.877 32.000 0.00 0.00 0.00 2.32
380 381 7.563906 TGGGAAAGAGAAAATGTGAACAATTT 58.436 30.769 0.00 0.00 32.17 1.82
381 382 8.046107 TGGGAAAGAGAAAATGTGAACAATTTT 58.954 29.630 0.00 1.92 29.87 1.82
382 383 8.337532 GGGAAAGAGAAAATGTGAACAATTTTG 58.662 33.333 0.00 0.00 29.87 2.44
383 384 8.337532 GGAAAGAGAAAATGTGAACAATTTTGG 58.662 33.333 0.00 0.00 29.87 3.28
384 385 9.097257 GAAAGAGAAAATGTGAACAATTTTGGA 57.903 29.630 0.00 0.00 29.87 3.53
385 386 9.447157 AAAGAGAAAATGTGAACAATTTTGGAA 57.553 25.926 0.00 0.00 29.87 3.53
386 387 9.617523 AAGAGAAAATGTGAACAATTTTGGAAT 57.382 25.926 0.00 0.00 29.87 3.01
389 390 9.829507 AGAAAATGTGAACAATTTTGGAATACA 57.170 25.926 0.00 0.00 29.87 2.29
481 482 9.705290 AGAATGCGAACCTTTTTATAAATTTGT 57.295 25.926 0.00 0.00 0.00 2.83
482 483 9.739786 GAATGCGAACCTTTTTATAAATTTGTG 57.260 29.630 0.00 0.00 0.00 3.33
483 484 9.482627 AATGCGAACCTTTTTATAAATTTGTGA 57.517 25.926 0.00 0.00 0.00 3.58
484 485 8.873215 TGCGAACCTTTTTATAAATTTGTGAA 57.127 26.923 0.00 0.00 0.00 3.18
485 486 8.756864 TGCGAACCTTTTTATAAATTTGTGAAC 58.243 29.630 0.00 0.00 0.00 3.18
486 487 8.756864 GCGAACCTTTTTATAAATTTGTGAACA 58.243 29.630 0.00 0.00 0.00 3.18
552 553 9.942850 AAAAAGGAAATCAGAAGAAACAGAAAA 57.057 25.926 0.00 0.00 0.00 2.29
556 557 9.799106 AGGAAATCAGAAGAAACAGAAAATAGA 57.201 29.630 0.00 0.00 0.00 1.98
589 590 8.996651 ATAGAAAAAGAAACAGGAAAAGGAGA 57.003 30.769 0.00 0.00 0.00 3.71
590 591 7.718334 AGAAAAAGAAACAGGAAAAGGAGAA 57.282 32.000 0.00 0.00 0.00 2.87
591 592 8.134202 AGAAAAAGAAACAGGAAAAGGAGAAA 57.866 30.769 0.00 0.00 0.00 2.52
592 593 8.593679 AGAAAAAGAAACAGGAAAAGGAGAAAA 58.406 29.630 0.00 0.00 0.00 2.29
593 594 9.214957 GAAAAAGAAACAGGAAAAGGAGAAAAA 57.785 29.630 0.00 0.00 0.00 1.94
619 620 2.586648 AAAATCCGCTTCAGGAACCT 57.413 45.000 0.00 0.00 44.50 3.50
620 621 2.115343 AAATCCGCTTCAGGAACCTC 57.885 50.000 0.00 0.00 44.50 3.85
621 622 0.253327 AATCCGCTTCAGGAACCTCC 59.747 55.000 0.00 0.00 44.50 4.30
639 640 4.079970 CCTCCTAGAAGGTTTCCAAAACC 58.920 47.826 12.64 12.64 40.58 3.27
640 641 4.447180 CCTCCTAGAAGGTTTCCAAAACCA 60.447 45.833 20.47 2.62 42.69 3.67
641 642 4.725490 TCCTAGAAGGTTTCCAAAACCAG 58.275 43.478 20.47 10.68 42.69 4.00
642 643 4.414182 TCCTAGAAGGTTTCCAAAACCAGA 59.586 41.667 20.47 7.15 42.69 3.86
643 644 5.103855 TCCTAGAAGGTTTCCAAAACCAGAA 60.104 40.000 20.47 5.46 42.69 3.02
644 645 5.596772 CCTAGAAGGTTTCCAAAACCAGAAA 59.403 40.000 20.47 5.75 42.69 2.52
645 646 6.097696 CCTAGAAGGTTTCCAAAACCAGAAAA 59.902 38.462 20.47 4.61 42.69 2.29
646 647 6.367374 AGAAGGTTTCCAAAACCAGAAAAA 57.633 33.333 20.47 0.00 42.69 1.94
647 648 6.170506 AGAAGGTTTCCAAAACCAGAAAAAC 58.829 36.000 20.47 6.50 42.69 2.43
648 649 4.839121 AGGTTTCCAAAACCAGAAAAACC 58.161 39.130 20.47 6.69 43.72 3.27
649 650 4.287326 AGGTTTCCAAAACCAGAAAAACCA 59.713 37.500 20.47 0.00 45.08 3.67
650 651 4.634004 GGTTTCCAAAACCAGAAAAACCAG 59.366 41.667 15.06 0.00 43.17 4.00
651 652 3.535280 TCCAAAACCAGAAAAACCAGC 57.465 42.857 0.00 0.00 0.00 4.85
652 653 3.103742 TCCAAAACCAGAAAAACCAGCT 58.896 40.909 0.00 0.00 0.00 4.24
653 654 4.282496 TCCAAAACCAGAAAAACCAGCTA 58.718 39.130 0.00 0.00 0.00 3.32
654 655 4.340950 TCCAAAACCAGAAAAACCAGCTAG 59.659 41.667 0.00 0.00 0.00 3.42
655 656 4.501400 CCAAAACCAGAAAAACCAGCTAGG 60.501 45.833 0.00 0.00 45.67 3.02
656 657 3.876309 AACCAGAAAAACCAGCTAGGA 57.124 42.857 8.91 0.00 41.22 2.94
657 658 4.388577 AACCAGAAAAACCAGCTAGGAT 57.611 40.909 8.91 0.00 41.22 3.24
658 659 4.388577 ACCAGAAAAACCAGCTAGGATT 57.611 40.909 8.91 1.30 41.22 3.01
659 660 4.336280 ACCAGAAAAACCAGCTAGGATTC 58.664 43.478 8.91 9.35 41.22 2.52
660 661 4.043435 ACCAGAAAAACCAGCTAGGATTCT 59.957 41.667 8.91 10.93 41.22 2.40
661 662 4.637977 CCAGAAAAACCAGCTAGGATTCTC 59.362 45.833 8.91 0.98 41.22 2.87
662 663 5.495640 CAGAAAAACCAGCTAGGATTCTCT 58.504 41.667 8.91 3.03 41.22 3.10
663 664 5.942826 CAGAAAAACCAGCTAGGATTCTCTT 59.057 40.000 8.91 0.00 41.22 2.85
664 665 7.106239 CAGAAAAACCAGCTAGGATTCTCTTA 58.894 38.462 8.91 0.00 41.22 2.10
665 666 7.279758 CAGAAAAACCAGCTAGGATTCTCTTAG 59.720 40.741 8.91 0.00 41.22 2.18
666 667 6.875972 AAAACCAGCTAGGATTCTCTTAGA 57.124 37.500 8.91 0.00 41.22 2.10
667 668 6.875972 AAACCAGCTAGGATTCTCTTAGAA 57.124 37.500 8.91 0.00 41.22 2.10
668 669 6.478512 AACCAGCTAGGATTCTCTTAGAAG 57.521 41.667 8.91 0.00 38.08 2.85
669 670 4.898861 ACCAGCTAGGATTCTCTTAGAAGG 59.101 45.833 8.91 1.68 38.08 3.46
670 671 4.898861 CCAGCTAGGATTCTCTTAGAAGGT 59.101 45.833 0.00 0.00 37.69 3.50
671 672 5.365314 CCAGCTAGGATTCTCTTAGAAGGTT 59.635 44.000 0.00 0.00 37.69 3.50
672 673 6.462347 CCAGCTAGGATTCTCTTAGAAGGTTC 60.462 46.154 0.00 0.00 37.69 3.62
673 674 5.600898 AGCTAGGATTCTCTTAGAAGGTTCC 59.399 44.000 0.00 0.00 37.69 3.62
674 675 5.221561 GCTAGGATTCTCTTAGAAGGTTCCC 60.222 48.000 4.81 0.00 37.69 3.97
675 676 4.699994 AGGATTCTCTTAGAAGGTTCCCA 58.300 43.478 4.81 0.00 37.69 4.37
676 677 5.101529 AGGATTCTCTTAGAAGGTTCCCAA 58.898 41.667 4.81 0.00 37.69 4.12
677 678 5.551977 AGGATTCTCTTAGAAGGTTCCCAAA 59.448 40.000 4.81 0.00 37.69 3.28
678 679 6.045577 AGGATTCTCTTAGAAGGTTCCCAAAA 59.954 38.462 4.81 0.00 37.69 2.44
679 680 6.151312 GGATTCTCTTAGAAGGTTCCCAAAAC 59.849 42.308 0.00 0.00 37.69 2.43
680 681 4.981812 TCTCTTAGAAGGTTCCCAAAACC 58.018 43.478 0.00 0.00 40.58 3.27
681 682 3.746940 TCTTAGAAGGTTCCCAAAACCG 58.253 45.455 1.52 0.00 44.82 4.44
682 683 2.572209 TAGAAGGTTCCCAAAACCGG 57.428 50.000 0.00 0.00 44.82 5.28
691 692 3.175133 CCAAAACCGGGATGGAGAG 57.825 57.895 15.21 0.00 42.00 3.20
692 693 1.032114 CCAAAACCGGGATGGAGAGC 61.032 60.000 15.21 0.00 42.00 4.09
693 694 0.035056 CAAAACCGGGATGGAGAGCT 60.035 55.000 6.32 0.00 42.00 4.09
694 695 0.698818 AAAACCGGGATGGAGAGCTT 59.301 50.000 6.32 0.00 42.00 3.74
695 696 0.698818 AAACCGGGATGGAGAGCTTT 59.301 50.000 6.32 0.00 42.00 3.51
696 697 0.698818 AACCGGGATGGAGAGCTTTT 59.301 50.000 6.32 0.00 42.00 2.27
697 698 0.253327 ACCGGGATGGAGAGCTTTTC 59.747 55.000 6.32 0.00 42.00 2.29
698 699 0.464554 CCGGGATGGAGAGCTTTTCC 60.465 60.000 10.46 10.46 42.00 3.13
717 718 2.736531 AAAAAGCTTGCCCGCTGG 59.263 55.556 0.00 0.00 40.79 4.85
738 739 4.650377 GGCCGGCCCAGATCATCC 62.650 72.222 36.64 5.01 0.00 3.51
739 740 4.650377 GCCGGCCCAGATCATCCC 62.650 72.222 18.11 0.00 0.00 3.85
740 741 2.851102 CCGGCCCAGATCATCCCT 60.851 66.667 0.00 0.00 0.00 4.20
741 742 2.746359 CGGCCCAGATCATCCCTC 59.254 66.667 0.00 0.00 0.00 4.30
742 743 2.746359 GGCCCAGATCATCCCTCG 59.254 66.667 0.00 0.00 0.00 4.63
743 744 2.031768 GCCCAGATCATCCCTCGC 59.968 66.667 0.00 0.00 0.00 5.03
744 745 2.515071 GCCCAGATCATCCCTCGCT 61.515 63.158 0.00 0.00 0.00 4.93
745 746 1.670590 CCCAGATCATCCCTCGCTC 59.329 63.158 0.00 0.00 0.00 5.03
746 747 1.288439 CCAGATCATCCCTCGCTCG 59.712 63.158 0.00 0.00 0.00 5.03
747 748 1.372748 CAGATCATCCCTCGCTCGC 60.373 63.158 0.00 0.00 0.00 5.03
748 749 2.429907 GATCATCCCTCGCTCGCG 60.430 66.667 0.00 0.00 41.35 5.87
749 750 2.907407 ATCATCCCTCGCTCGCGA 60.907 61.111 9.26 9.26 46.87 5.87
757 758 4.735132 TCGCTCGCGAACCTTGGG 62.735 66.667 11.33 6.65 46.01 4.12
760 761 2.742372 CTCGCGAACCTTGGGGTG 60.742 66.667 11.33 0.00 46.67 4.61
761 762 3.234630 CTCGCGAACCTTGGGGTGA 62.235 63.158 11.33 0.00 46.67 4.02
762 763 2.281208 CGCGAACCTTGGGGTGAA 60.281 61.111 0.00 0.00 46.67 3.18
763 764 1.894756 CGCGAACCTTGGGGTGAAA 60.895 57.895 0.00 0.00 46.67 2.69
764 765 1.852067 CGCGAACCTTGGGGTGAAAG 61.852 60.000 0.00 0.00 46.67 2.62
765 766 1.956802 CGAACCTTGGGGTGAAAGC 59.043 57.895 0.00 0.00 46.67 3.51
766 767 0.537371 CGAACCTTGGGGTGAAAGCT 60.537 55.000 0.00 0.00 46.67 3.74
767 768 1.248486 GAACCTTGGGGTGAAAGCTC 58.752 55.000 0.00 0.00 46.67 4.09
768 769 0.537371 AACCTTGGGGTGAAAGCTCG 60.537 55.000 0.00 0.00 46.67 5.03
769 770 1.374947 CCTTGGGGTGAAAGCTCGA 59.625 57.895 0.00 0.00 37.93 4.04
770 771 0.955919 CCTTGGGGTGAAAGCTCGAC 60.956 60.000 0.00 0.00 37.93 4.20
771 772 0.250295 CTTGGGGTGAAAGCTCGACA 60.250 55.000 0.00 0.00 37.93 4.35
772 773 0.181587 TTGGGGTGAAAGCTCGACAA 59.818 50.000 0.00 0.00 37.93 3.18
773 774 0.534203 TGGGGTGAAAGCTCGACAAC 60.534 55.000 0.00 0.00 37.93 3.32
774 775 0.250338 GGGGTGAAAGCTCGACAACT 60.250 55.000 0.00 0.00 0.00 3.16
775 776 1.001633 GGGGTGAAAGCTCGACAACTA 59.998 52.381 0.00 0.00 0.00 2.24
776 777 2.067013 GGGTGAAAGCTCGACAACTAC 58.933 52.381 0.00 0.00 0.00 2.73
777 778 1.719780 GGTGAAAGCTCGACAACTACG 59.280 52.381 0.00 0.00 0.00 3.51
778 779 1.124477 GTGAAAGCTCGACAACTACGC 59.876 52.381 0.00 0.00 0.00 4.42
779 780 1.269361 TGAAAGCTCGACAACTACGCA 60.269 47.619 0.00 0.00 0.00 5.24
780 781 1.387084 GAAAGCTCGACAACTACGCAG 59.613 52.381 0.00 0.00 0.00 5.18
781 782 1.009389 AAGCTCGACAACTACGCAGC 61.009 55.000 0.00 0.00 35.72 5.25
782 783 1.733041 GCTCGACAACTACGCAGCA 60.733 57.895 0.00 0.00 35.64 4.41
783 784 1.078759 GCTCGACAACTACGCAGCAT 61.079 55.000 0.00 0.00 35.64 3.79
784 785 1.797713 GCTCGACAACTACGCAGCATA 60.798 52.381 0.00 0.00 35.64 3.14
785 786 2.732366 CTCGACAACTACGCAGCATAT 58.268 47.619 0.00 0.00 0.00 1.78
786 787 3.852205 GCTCGACAACTACGCAGCATATA 60.852 47.826 0.00 0.00 35.64 0.86
787 788 3.885358 TCGACAACTACGCAGCATATAG 58.115 45.455 0.00 0.00 0.00 1.31
788 789 2.980476 CGACAACTACGCAGCATATAGG 59.020 50.000 0.00 0.00 0.00 2.57
789 790 3.304458 CGACAACTACGCAGCATATAGGA 60.304 47.826 0.00 0.00 0.00 2.94
790 791 4.616143 CGACAACTACGCAGCATATAGGAT 60.616 45.833 0.00 0.00 0.00 3.24
791 792 5.215252 ACAACTACGCAGCATATAGGATT 57.785 39.130 0.00 0.00 0.00 3.01
792 793 5.611374 ACAACTACGCAGCATATAGGATTT 58.389 37.500 0.00 0.00 0.00 2.17
793 794 6.055588 ACAACTACGCAGCATATAGGATTTT 58.944 36.000 0.00 0.00 0.00 1.82
794 795 6.202954 ACAACTACGCAGCATATAGGATTTTC 59.797 38.462 0.00 0.00 0.00 2.29
795 796 5.238583 ACTACGCAGCATATAGGATTTTCC 58.761 41.667 0.00 0.00 36.58 3.13
796 797 4.085357 ACGCAGCATATAGGATTTTCCA 57.915 40.909 0.00 0.00 39.61 3.53
797 798 3.815401 ACGCAGCATATAGGATTTTCCAC 59.185 43.478 0.00 0.00 39.61 4.02
798 799 3.120546 CGCAGCATATAGGATTTTCCACG 60.121 47.826 0.00 0.00 39.61 4.94
799 800 3.365364 GCAGCATATAGGATTTTCCACGC 60.365 47.826 0.00 0.00 39.61 5.34
800 801 4.067896 CAGCATATAGGATTTTCCACGCT 58.932 43.478 0.00 0.00 39.61 5.07
801 802 4.153117 CAGCATATAGGATTTTCCACGCTC 59.847 45.833 0.00 0.00 39.61 5.03
802 803 3.437049 GCATATAGGATTTTCCACGCTCC 59.563 47.826 0.00 0.00 39.61 4.70
803 804 2.640316 ATAGGATTTTCCACGCTCCC 57.360 50.000 0.00 0.00 39.61 4.30
804 805 0.544697 TAGGATTTTCCACGCTCCCC 59.455 55.000 0.00 0.00 39.61 4.81
805 806 2.112815 GGATTTTCCACGCTCCCCG 61.113 63.158 0.00 0.00 44.21 5.73
806 807 2.045340 ATTTTCCACGCTCCCCGG 60.045 61.111 0.00 0.00 42.52 5.73
815 816 4.925861 GCTCCCCGGCTGATGCTC 62.926 72.222 0.00 0.00 39.59 4.26
816 817 4.598894 CTCCCCGGCTGATGCTCG 62.599 72.222 0.00 0.00 39.59 5.03
818 819 3.536917 CCCCGGCTGATGCTCGTA 61.537 66.667 0.00 0.00 39.59 3.43
819 820 2.499205 CCCGGCTGATGCTCGTAA 59.501 61.111 0.00 0.00 39.59 3.18
820 821 1.883084 CCCGGCTGATGCTCGTAAC 60.883 63.158 0.00 0.00 39.59 2.50
821 822 1.883084 CCGGCTGATGCTCGTAACC 60.883 63.158 0.00 0.00 39.59 2.85
822 823 2.230940 CGGCTGATGCTCGTAACCG 61.231 63.158 0.00 0.00 39.59 4.44
823 824 1.153628 GGCTGATGCTCGTAACCGT 60.154 57.895 0.00 0.00 39.59 4.83
824 825 0.739813 GGCTGATGCTCGTAACCGTT 60.740 55.000 0.00 0.00 39.59 4.44
825 826 0.645868 GCTGATGCTCGTAACCGTTC 59.354 55.000 0.00 0.00 36.03 3.95
826 827 1.990799 CTGATGCTCGTAACCGTTCA 58.009 50.000 0.00 0.00 35.01 3.18
827 828 1.920574 CTGATGCTCGTAACCGTTCAG 59.079 52.381 0.00 0.00 35.01 3.02
828 829 1.542472 TGATGCTCGTAACCGTTCAGA 59.458 47.619 0.00 0.00 35.01 3.27
829 830 2.186076 GATGCTCGTAACCGTTCAGAG 58.814 52.381 10.10 10.10 35.01 3.35
830 831 0.242825 TGCTCGTAACCGTTCAGAGG 59.757 55.000 14.18 0.00 35.01 3.69
831 832 1.077089 GCTCGTAACCGTTCAGAGGC 61.077 60.000 14.18 6.42 35.01 4.70
832 833 0.458025 CTCGTAACCGTTCAGAGGCC 60.458 60.000 0.00 0.00 35.01 5.19
833 834 1.447314 CGTAACCGTTCAGAGGCCC 60.447 63.158 0.00 0.00 0.00 5.80
834 835 1.078637 GTAACCGTTCAGAGGCCCC 60.079 63.158 0.00 0.00 0.00 5.80
835 836 2.652095 TAACCGTTCAGAGGCCCCG 61.652 63.158 0.00 0.00 0.00 5.73
873 874 2.667199 TGAGCTCACGACCGACGA 60.667 61.111 13.74 0.00 45.77 4.20
874 875 2.098680 GAGCTCACGACCGACGAG 59.901 66.667 9.40 3.15 45.77 4.18
875 876 4.104417 AGCTCACGACCGACGAGC 62.104 66.667 21.55 21.55 45.77 5.03
877 878 4.813526 CTCACGACCGACGAGCCG 62.814 72.222 0.00 0.00 45.77 5.52
905 906 3.379445 GGACTCGGAGCCGACCAA 61.379 66.667 7.66 0.00 44.01 3.67
906 907 2.182030 GACTCGGAGCCGACCAAG 59.818 66.667 7.66 0.87 44.01 3.61
907 908 3.991536 GACTCGGAGCCGACCAAGC 62.992 68.421 7.66 0.00 44.01 4.01
927 928 4.176851 GACCGAGGTCGACCGAGC 62.177 72.222 28.26 19.79 43.02 5.03
950 951 2.915504 AAGGCTGGCTGCAGGTCAT 61.916 57.895 17.12 0.00 45.15 3.06
953 954 1.818785 GCTGGCTGCAGGTCATCTC 60.819 63.158 17.12 0.00 42.31 2.75
962 963 1.977009 AGGTCATCTCCGTGCACGA 60.977 57.895 39.10 23.33 43.02 4.35
1118 1155 6.238897 CCTCTCGTTGCTCTGATTATTACTCT 60.239 42.308 0.00 0.00 0.00 3.24
1124 1161 4.022762 TGCTCTGATTATTACTCTCCTCGC 60.023 45.833 0.00 0.00 0.00 5.03
1164 1217 1.130777 TGAATCCCATCTCGGCATCA 58.869 50.000 0.00 0.00 0.00 3.07
1165 1218 1.071228 TGAATCCCATCTCGGCATCAG 59.929 52.381 0.00 0.00 0.00 2.90
1166 1219 0.250640 AATCCCATCTCGGCATCAGC 60.251 55.000 0.00 0.00 41.10 4.26
1167 1220 1.126329 ATCCCATCTCGGCATCAGCT 61.126 55.000 0.00 0.00 41.70 4.24
1205 1258 2.154462 ACTTTGCCTGATTTCCAGACG 58.846 47.619 0.00 0.00 45.78 4.18
1210 1263 1.560923 CCTGATTTCCAGACGTAGCG 58.439 55.000 0.00 0.00 45.78 4.26
1280 1333 2.857152 TCAAACATTTTTGTGCGCAGTC 59.143 40.909 12.22 0.00 42.51 3.51
1282 1335 0.031994 ACATTTTTGTGCGCAGTCCC 59.968 50.000 12.22 0.00 0.00 4.46
1292 1345 2.660064 CGCAGTCCCTAGGTGGCTT 61.660 63.158 8.29 0.00 0.00 4.35
1401 1454 5.009410 CCAAGCATTGTTCCAAGAGGATATC 59.991 44.000 0.00 0.00 46.99 1.63
1515 1568 2.580815 CTGCCGATGCTGACCTCA 59.419 61.111 0.00 0.00 38.61 3.86
1625 1678 2.036346 GCTGTTGTTCTTCAATTGGGCT 59.964 45.455 5.42 0.00 38.38 5.19
1629 1682 0.968405 GTTCTTCAATTGGGCTGCCA 59.032 50.000 22.05 0.00 0.00 4.92
1655 1708 3.709880 TTCGTATGAGCACGGCCCG 62.710 63.158 0.00 0.00 42.19 6.13
1715 1768 4.096681 TGAAGAAGGTCAGGCTTATGAGA 58.903 43.478 0.00 0.00 0.00 3.27
1865 1918 3.118000 GGAAGGATTATGGGTTCGAGGTT 60.118 47.826 0.00 0.00 0.00 3.50
2063 2116 5.427378 TGGAACGAGATCATTGCATCTAAA 58.573 37.500 0.00 0.00 32.94 1.85
2492 2545 4.593206 TCAGGTTGTAAGTTGGACTCTGAT 59.407 41.667 0.00 0.00 0.00 2.90
2844 2897 5.179045 TCGTAAATAGTCACCGGAAGATC 57.821 43.478 9.46 1.03 0.00 2.75
2896 2949 3.749954 AGCATCTGGGCTTATGGAACATC 60.750 47.826 0.00 0.00 43.03 3.06
2909 2962 4.371624 TGGAACATCATCCAGTGACTTT 57.628 40.909 0.00 0.00 44.52 2.66
3185 3238 9.784531 ATATGTCCAAATATCTTGTAGAACTGG 57.215 33.333 0.00 0.00 0.00 4.00
3192 3245 9.014297 CAAATATCTTGTAGAACTGGAAAGGTT 57.986 33.333 0.00 0.00 0.00 3.50
3222 3275 5.365025 AGTGATGATACTGCTGGTTCTGTAT 59.635 40.000 0.00 0.00 34.96 2.29
3267 3320 9.465985 GAGCTAATGGTACTAACTACTGAATTC 57.534 37.037 0.00 0.00 0.00 2.17
3274 3327 9.750783 TGGTACTAACTACTGAATTCTTAGTCT 57.249 33.333 16.17 11.07 31.61 3.24
3301 3354 6.478344 GTCCAATTCACATTTGTGTGCTAAAA 59.522 34.615 10.30 0.00 45.76 1.52
3426 3479 1.112315 TTTTCGCACAGCCAATGGGT 61.112 50.000 0.00 0.00 33.46 4.51
3462 3515 5.106673 GGTAAGCAATTGACCTGTCACTAAC 60.107 44.000 10.34 0.00 39.66 2.34
3472 3525 0.758734 TGTCACTAACTGCTGCCACT 59.241 50.000 0.00 0.00 0.00 4.00
3485 3538 4.263572 CCACTGAACCACCCGCCA 62.264 66.667 0.00 0.00 0.00 5.69
3496 3549 1.615919 CCACCCGCCACTTATTTTCCT 60.616 52.381 0.00 0.00 0.00 3.36
3693 3746 7.961325 ATTGTGTTTTGGCGAAGATTAATTT 57.039 28.000 0.00 0.00 0.00 1.82
3694 3747 7.778470 TTGTGTTTTGGCGAAGATTAATTTT 57.222 28.000 0.00 0.00 0.00 1.82
3695 3748 7.171447 TGTGTTTTGGCGAAGATTAATTTTG 57.829 32.000 0.00 0.00 0.00 2.44
3696 3749 6.980978 TGTGTTTTGGCGAAGATTAATTTTGA 59.019 30.769 0.00 0.00 0.00 2.69
3697 3750 7.043059 TGTGTTTTGGCGAAGATTAATTTTGAC 60.043 33.333 0.00 0.00 0.00 3.18
3698 3751 7.169140 GTGTTTTGGCGAAGATTAATTTTGACT 59.831 33.333 0.00 0.00 0.00 3.41
3699 3752 7.708752 TGTTTTGGCGAAGATTAATTTTGACTT 59.291 29.630 0.00 0.00 0.00 3.01
3700 3753 9.187455 GTTTTGGCGAAGATTAATTTTGACTTA 57.813 29.630 0.00 0.00 0.00 2.24
3701 3754 9.751542 TTTTGGCGAAGATTAATTTTGACTTAA 57.248 25.926 0.00 0.00 0.00 1.85
3702 3755 9.921637 TTTGGCGAAGATTAATTTTGACTTAAT 57.078 25.926 0.00 0.00 32.78 1.40
3703 3756 9.921637 TTGGCGAAGATTAATTTTGACTTAATT 57.078 25.926 0.00 0.00 30.81 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.732746 TCAAATTCGTTTGGGGATTTTAAAAA 57.267 26.923 4.44 0.00 32.99 1.94
26 27 8.732746 TTCAAATTCGTTTGGGGATTTTAAAA 57.267 26.923 2.51 2.51 32.99 1.52
27 28 8.732746 TTTCAAATTCGTTTGGGGATTTTAAA 57.267 26.923 1.55 0.00 32.99 1.52
28 29 8.732746 TTTTCAAATTCGTTTGGGGATTTTAA 57.267 26.923 1.55 0.00 32.99 1.52
29 30 8.910351 ATTTTCAAATTCGTTTGGGGATTTTA 57.090 26.923 1.55 0.00 32.99 1.52
30 31 7.815840 ATTTTCAAATTCGTTTGGGGATTTT 57.184 28.000 1.55 0.00 32.99 1.82
31 32 7.606073 CCTATTTTCAAATTCGTTTGGGGATTT 59.394 33.333 1.55 0.00 32.99 2.17
32 33 7.102993 CCTATTTTCAAATTCGTTTGGGGATT 58.897 34.615 1.55 0.00 32.99 3.01
33 34 6.351796 CCCTATTTTCAAATTCGTTTGGGGAT 60.352 38.462 0.00 0.01 31.64 3.85
34 35 5.046950 CCCTATTTTCAAATTCGTTTGGGGA 60.047 40.000 0.00 0.00 31.64 4.81
35 36 5.046950 TCCCTATTTTCAAATTCGTTTGGGG 60.047 40.000 0.00 0.00 32.99 4.96
36 37 5.867174 GTCCCTATTTTCAAATTCGTTTGGG 59.133 40.000 0.00 0.00 32.99 4.12
37 38 6.451393 TGTCCCTATTTTCAAATTCGTTTGG 58.549 36.000 1.55 0.00 32.99 3.28
38 39 8.532977 AATGTCCCTATTTTCAAATTCGTTTG 57.467 30.769 0.00 0.00 0.00 2.93
39 40 9.554395 AAAATGTCCCTATTTTCAAATTCGTTT 57.446 25.926 0.00 0.00 35.88 3.60
40 41 9.554395 AAAAATGTCCCTATTTTCAAATTCGTT 57.446 25.926 0.00 0.00 38.83 3.85
63 64 7.383300 CCAAAAATTGTTGGCAAACTTCAAAAA 59.617 29.630 14.54 0.00 41.63 1.94
64 65 6.865205 CCAAAAATTGTTGGCAAACTTCAAAA 59.135 30.769 14.54 0.00 41.63 2.44
65 66 6.207417 TCCAAAAATTGTTGGCAAACTTCAAA 59.793 30.769 21.03 0.00 46.56 2.69
66 67 5.707298 TCCAAAAATTGTTGGCAAACTTCAA 59.293 32.000 21.03 2.07 46.56 2.69
67 68 5.248640 TCCAAAAATTGTTGGCAAACTTCA 58.751 33.333 21.03 0.07 46.56 3.02
68 69 5.809719 TCCAAAAATTGTTGGCAAACTTC 57.190 34.783 21.03 0.00 46.56 3.01
69 70 6.581171 TTTCCAAAAATTGTTGGCAAACTT 57.419 29.167 21.03 0.00 46.56 2.66
70 71 6.581171 TTTTCCAAAAATTGTTGGCAAACT 57.419 29.167 21.03 0.00 46.56 2.66
72 73 6.331369 TGTTTTCCAAAAATTGTTGGCAAA 57.669 29.167 21.03 19.41 46.56 3.68
73 74 5.105997 CCTGTTTTCCAAAAATTGTTGGCAA 60.106 36.000 21.03 14.71 46.56 4.52
74 75 4.397417 CCTGTTTTCCAAAAATTGTTGGCA 59.603 37.500 21.03 9.09 46.56 4.92
75 76 4.637977 TCCTGTTTTCCAAAAATTGTTGGC 59.362 37.500 21.03 8.82 46.56 4.52
77 78 7.020602 GTGTTCCTGTTTTCCAAAAATTGTTG 58.979 34.615 0.93 0.93 0.00 3.33
78 79 6.128418 CGTGTTCCTGTTTTCCAAAAATTGTT 60.128 34.615 0.00 0.00 0.00 2.83
79 80 5.350091 CGTGTTCCTGTTTTCCAAAAATTGT 59.650 36.000 0.00 0.00 0.00 2.71
80 81 5.350091 ACGTGTTCCTGTTTTCCAAAAATTG 59.650 36.000 0.00 0.00 0.00 2.32
81 82 5.483811 ACGTGTTCCTGTTTTCCAAAAATT 58.516 33.333 0.00 0.00 0.00 1.82
82 83 5.079689 ACGTGTTCCTGTTTTCCAAAAAT 57.920 34.783 0.00 0.00 0.00 1.82
83 84 4.522722 ACGTGTTCCTGTTTTCCAAAAA 57.477 36.364 0.00 0.00 0.00 1.94
84 85 4.522722 AACGTGTTCCTGTTTTCCAAAA 57.477 36.364 0.00 0.00 0.00 2.44
85 86 4.522722 AAACGTGTTCCTGTTTTCCAAA 57.477 36.364 0.00 0.00 34.82 3.28
86 87 4.238514 CAAAACGTGTTCCTGTTTTCCAA 58.761 39.130 0.00 0.00 44.13 3.53
87 88 3.367498 CCAAAACGTGTTCCTGTTTTCCA 60.367 43.478 0.00 0.00 44.13 3.53
88 89 3.119424 TCCAAAACGTGTTCCTGTTTTCC 60.119 43.478 0.00 0.00 44.13 3.13
89 90 4.099380 TCCAAAACGTGTTCCTGTTTTC 57.901 40.909 0.00 0.00 44.13 2.29
90 91 4.239304 GTTCCAAAACGTGTTCCTGTTTT 58.761 39.130 0.00 0.00 46.17 2.43
91 92 3.367600 GGTTCCAAAACGTGTTCCTGTTT 60.368 43.478 0.00 0.00 39.84 2.83
92 93 2.164827 GGTTCCAAAACGTGTTCCTGTT 59.835 45.455 0.00 0.00 36.16 3.16
93 94 1.746787 GGTTCCAAAACGTGTTCCTGT 59.253 47.619 0.00 0.00 36.16 4.00
94 95 1.746220 TGGTTCCAAAACGTGTTCCTG 59.254 47.619 0.00 0.00 36.16 3.86
95 96 1.746787 GTGGTTCCAAAACGTGTTCCT 59.253 47.619 0.00 0.00 36.16 3.36
96 97 1.473278 TGTGGTTCCAAAACGTGTTCC 59.527 47.619 0.00 0.00 36.16 3.62
97 98 2.923605 TGTGGTTCCAAAACGTGTTC 57.076 45.000 0.00 0.00 36.16 3.18
98 99 2.820787 TCTTGTGGTTCCAAAACGTGTT 59.179 40.909 0.00 0.00 36.16 3.32
99 100 2.422127 CTCTTGTGGTTCCAAAACGTGT 59.578 45.455 0.00 0.00 36.16 4.49
100 101 2.422127 ACTCTTGTGGTTCCAAAACGTG 59.578 45.455 0.00 0.00 36.16 4.49
101 102 2.718563 ACTCTTGTGGTTCCAAAACGT 58.281 42.857 0.00 0.00 36.16 3.99
102 103 3.775661 AACTCTTGTGGTTCCAAAACG 57.224 42.857 0.00 0.00 36.16 3.60
161 162 7.445402 TCCCAAAATTGTTCACACTTTCAAAAA 59.555 29.630 0.00 0.00 30.02 1.94
162 163 6.936900 TCCCAAAATTGTTCACACTTTCAAAA 59.063 30.769 0.00 0.00 30.02 2.44
163 164 6.467677 TCCCAAAATTGTTCACACTTTCAAA 58.532 32.000 0.00 0.00 30.02 2.69
164 165 6.042638 TCCCAAAATTGTTCACACTTTCAA 57.957 33.333 0.00 0.00 30.02 2.69
165 166 5.667539 TCCCAAAATTGTTCACACTTTCA 57.332 34.783 0.00 0.00 30.02 2.69
166 167 6.370166 TGTTTCCCAAAATTGTTCACACTTTC 59.630 34.615 0.00 0.00 30.02 2.62
167 168 6.234177 TGTTTCCCAAAATTGTTCACACTTT 58.766 32.000 0.00 0.00 31.32 2.66
168 169 5.799213 TGTTTCCCAAAATTGTTCACACTT 58.201 33.333 0.00 0.00 0.00 3.16
169 170 5.413309 TGTTTCCCAAAATTGTTCACACT 57.587 34.783 0.00 0.00 0.00 3.55
170 171 5.814705 TCATGTTTCCCAAAATTGTTCACAC 59.185 36.000 0.00 0.00 0.00 3.82
171 172 5.982356 TCATGTTTCCCAAAATTGTTCACA 58.018 33.333 0.00 0.00 0.00 3.58
172 173 6.314896 TGTTCATGTTTCCCAAAATTGTTCAC 59.685 34.615 0.00 0.00 0.00 3.18
173 174 6.409704 TGTTCATGTTTCCCAAAATTGTTCA 58.590 32.000 0.00 0.00 0.00 3.18
174 175 6.917217 TGTTCATGTTTCCCAAAATTGTTC 57.083 33.333 0.00 0.00 0.00 3.18
175 176 7.878547 AATGTTCATGTTTCCCAAAATTGTT 57.121 28.000 0.00 0.00 0.00 2.83
176 177 7.878547 AAATGTTCATGTTTCCCAAAATTGT 57.121 28.000 0.00 0.00 0.00 2.71
177 178 8.623030 AGAAAATGTTCATGTTTCCCAAAATTG 58.377 29.630 0.00 0.00 36.09 2.32
178 179 8.623030 CAGAAAATGTTCATGTTTCCCAAAATT 58.377 29.630 0.00 0.00 36.09 1.82
179 180 7.992033 TCAGAAAATGTTCATGTTTCCCAAAAT 59.008 29.630 0.00 0.00 36.09 1.82
180 181 7.334090 TCAGAAAATGTTCATGTTTCCCAAAA 58.666 30.769 0.00 0.00 36.09 2.44
181 182 6.882656 TCAGAAAATGTTCATGTTTCCCAAA 58.117 32.000 0.00 0.00 36.09 3.28
182 183 6.477053 TCAGAAAATGTTCATGTTTCCCAA 57.523 33.333 0.00 0.00 36.09 4.12
183 184 6.477053 TTCAGAAAATGTTCATGTTTCCCA 57.523 33.333 0.00 0.00 36.09 4.37
184 185 7.516627 CGTTTTCAGAAAATGTTCATGTTTCCC 60.517 37.037 16.85 0.00 36.09 3.97
185 186 7.221838 TCGTTTTCAGAAAATGTTCATGTTTCC 59.778 33.333 22.04 2.06 38.30 3.13
186 187 8.114359 TCGTTTTCAGAAAATGTTCATGTTTC 57.886 30.769 22.04 0.00 38.30 2.78
187 188 7.973388 TCTCGTTTTCAGAAAATGTTCATGTTT 59.027 29.630 22.04 0.00 38.30 2.83
188 189 7.479980 TCTCGTTTTCAGAAAATGTTCATGTT 58.520 30.769 22.04 0.00 38.30 2.71
189 190 7.026631 TCTCGTTTTCAGAAAATGTTCATGT 57.973 32.000 22.04 0.00 38.30 3.21
190 191 7.431960 TGTTCTCGTTTTCAGAAAATGTTCATG 59.568 33.333 22.04 11.67 38.30 3.07
191 192 7.479980 TGTTCTCGTTTTCAGAAAATGTTCAT 58.520 30.769 22.04 0.00 38.30 2.57
192 193 6.847400 TGTTCTCGTTTTCAGAAAATGTTCA 58.153 32.000 22.04 15.25 38.30 3.18
193 194 7.914537 ATGTTCTCGTTTTCAGAAAATGTTC 57.085 32.000 22.04 13.55 38.30 3.18
194 195 9.965824 AATATGTTCTCGTTTTCAGAAAATGTT 57.034 25.926 22.04 8.36 38.30 2.71
195 196 9.965824 AAATATGTTCTCGTTTTCAGAAAATGT 57.034 25.926 22.04 8.89 38.30 2.71
205 206 9.862585 GCAAATTTCAAAATATGTTCTCGTTTT 57.137 25.926 0.00 0.00 0.00 2.43
206 207 9.039870 TGCAAATTTCAAAATATGTTCTCGTTT 57.960 25.926 0.00 0.00 0.00 3.60
207 208 8.586570 TGCAAATTTCAAAATATGTTCTCGTT 57.413 26.923 0.00 0.00 0.00 3.85
208 209 8.586570 TTGCAAATTTCAAAATATGTTCTCGT 57.413 26.923 0.00 0.00 0.00 4.18
225 226 9.598517 TCTGTTTTGAGAAACTATTTGCAAATT 57.401 25.926 28.45 12.53 44.33 1.82
226 227 9.598517 TTCTGTTTTGAGAAACTATTTGCAAAT 57.401 25.926 26.72 26.72 44.33 2.32
227 228 8.994429 TTCTGTTTTGAGAAACTATTTGCAAA 57.006 26.923 15.44 15.44 44.33 3.68
228 229 7.222611 GCTTCTGTTTTGAGAAACTATTTGCAA 59.777 33.333 0.00 0.00 44.33 4.08
229 230 6.697019 GCTTCTGTTTTGAGAAACTATTTGCA 59.303 34.615 3.98 0.00 44.33 4.08
230 231 6.697019 TGCTTCTGTTTTGAGAAACTATTTGC 59.303 34.615 3.98 0.00 44.33 3.68
231 232 8.633075 TTGCTTCTGTTTTGAGAAACTATTTG 57.367 30.769 3.98 0.00 44.33 2.32
232 233 9.252962 CATTGCTTCTGTTTTGAGAAACTATTT 57.747 29.630 3.98 0.00 44.33 1.40
233 234 8.416329 ACATTGCTTCTGTTTTGAGAAACTATT 58.584 29.630 3.98 0.00 44.33 1.73
234 235 7.945134 ACATTGCTTCTGTTTTGAGAAACTAT 58.055 30.769 3.98 0.00 44.33 2.12
235 236 7.333528 ACATTGCTTCTGTTTTGAGAAACTA 57.666 32.000 3.98 0.00 44.33 2.24
236 237 6.212888 ACATTGCTTCTGTTTTGAGAAACT 57.787 33.333 3.98 0.00 44.33 2.66
237 238 6.892310 AACATTGCTTCTGTTTTGAGAAAC 57.108 33.333 0.00 0.00 44.29 2.78
238 239 6.313411 CCAAACATTGCTTCTGTTTTGAGAAA 59.687 34.615 8.49 0.00 42.58 2.52
239 240 5.811613 CCAAACATTGCTTCTGTTTTGAGAA 59.188 36.000 8.49 0.00 42.58 2.87
240 241 5.126869 TCCAAACATTGCTTCTGTTTTGAGA 59.873 36.000 8.49 5.06 42.58 3.27
241 242 5.350633 TCCAAACATTGCTTCTGTTTTGAG 58.649 37.500 8.49 3.39 42.58 3.02
242 243 5.336150 TCCAAACATTGCTTCTGTTTTGA 57.664 34.783 8.49 8.31 42.58 2.69
243 244 6.092533 AGTTTCCAAACATTGCTTCTGTTTTG 59.907 34.615 5.03 6.61 42.58 2.44
244 245 6.172630 AGTTTCCAAACATTGCTTCTGTTTT 58.827 32.000 5.03 0.00 42.58 2.43
245 246 5.733676 AGTTTCCAAACATTGCTTCTGTTT 58.266 33.333 5.03 6.17 45.23 2.83
246 247 5.105392 TGAGTTTCCAAACATTGCTTCTGTT 60.105 36.000 5.03 0.00 41.30 3.16
247 248 4.402155 TGAGTTTCCAAACATTGCTTCTGT 59.598 37.500 5.03 0.00 41.30 3.41
248 249 4.935702 TGAGTTTCCAAACATTGCTTCTG 58.064 39.130 5.03 0.00 41.30 3.02
249 250 5.596836 TTGAGTTTCCAAACATTGCTTCT 57.403 34.783 5.03 0.00 41.30 2.85
250 251 6.313658 ACTTTTGAGTTTCCAAACATTGCTTC 59.686 34.615 5.03 0.00 41.30 3.86
251 252 6.172630 ACTTTTGAGTTTCCAAACATTGCTT 58.827 32.000 5.03 0.00 41.30 3.91
252 253 5.733676 ACTTTTGAGTTTCCAAACATTGCT 58.266 33.333 5.03 0.00 41.30 3.91
253 254 6.421377 AACTTTTGAGTTTCCAAACATTGC 57.579 33.333 5.03 0.00 41.30 3.56
276 277 7.584987 TCAAAAATTGTTCGCCTTTTCAAAAA 58.415 26.923 0.00 0.00 0.00 1.94
277 278 7.133891 TCAAAAATTGTTCGCCTTTTCAAAA 57.866 28.000 0.00 0.00 0.00 2.44
278 279 6.727824 TCAAAAATTGTTCGCCTTTTCAAA 57.272 29.167 0.00 0.00 0.00 2.69
279 280 6.727824 TTCAAAAATTGTTCGCCTTTTCAA 57.272 29.167 0.00 0.00 0.00 2.69
280 281 6.402658 GGTTTCAAAAATTGTTCGCCTTTTCA 60.403 34.615 0.00 0.00 0.00 2.69
281 282 5.963004 GGTTTCAAAAATTGTTCGCCTTTTC 59.037 36.000 0.00 0.00 0.00 2.29
282 283 5.412904 TGGTTTCAAAAATTGTTCGCCTTTT 59.587 32.000 0.00 0.00 0.00 2.27
283 284 4.938226 TGGTTTCAAAAATTGTTCGCCTTT 59.062 33.333 0.00 0.00 0.00 3.11
284 285 4.508662 TGGTTTCAAAAATTGTTCGCCTT 58.491 34.783 0.00 0.00 0.00 4.35
285 286 4.130286 TGGTTTCAAAAATTGTTCGCCT 57.870 36.364 0.00 0.00 0.00 5.52
286 287 4.319405 CCATGGTTTCAAAAATTGTTCGCC 60.319 41.667 2.57 0.00 0.00 5.54
287 288 4.509600 TCCATGGTTTCAAAAATTGTTCGC 59.490 37.500 12.58 0.00 0.00 4.70
288 289 6.036517 TGTTCCATGGTTTCAAAAATTGTTCG 59.963 34.615 12.58 0.00 0.00 3.95
289 290 7.313951 TGTTCCATGGTTTCAAAAATTGTTC 57.686 32.000 12.58 0.00 0.00 3.18
290 291 7.693969 TTGTTCCATGGTTTCAAAAATTGTT 57.306 28.000 12.58 0.00 0.00 2.83
291 292 7.693969 TTTGTTCCATGGTTTCAAAAATTGT 57.306 28.000 12.58 0.00 0.00 2.71
292 293 9.583765 AAATTTGTTCCATGGTTTCAAAAATTG 57.416 25.926 23.58 0.00 32.99 2.32
299 300 9.231297 TGTTTTTAAATTTGTTCCATGGTTTCA 57.769 25.926 12.58 6.89 0.00 2.69
302 303 9.401058 TCATGTTTTTAAATTTGTTCCATGGTT 57.599 25.926 12.58 0.00 0.00 3.67
303 304 8.970859 TCATGTTTTTAAATTTGTTCCATGGT 57.029 26.923 12.58 0.00 0.00 3.55
320 321 9.612066 AGTGTTTCCAACAATTATTCATGTTTT 57.388 25.926 0.00 0.00 44.16 2.43
351 352 7.390027 TGTTCACATTTTCTCTTTCCCAAAAA 58.610 30.769 0.00 0.00 0.00 1.94
352 353 6.940739 TGTTCACATTTTCTCTTTCCCAAAA 58.059 32.000 0.00 0.00 0.00 2.44
353 354 6.537453 TGTTCACATTTTCTCTTTCCCAAA 57.463 33.333 0.00 0.00 0.00 3.28
354 355 6.537453 TTGTTCACATTTTCTCTTTCCCAA 57.463 33.333 0.00 0.00 0.00 4.12
355 356 6.729690 ATTGTTCACATTTTCTCTTTCCCA 57.270 33.333 0.00 0.00 0.00 4.37
356 357 8.337532 CAAAATTGTTCACATTTTCTCTTTCCC 58.662 33.333 1.37 0.00 31.45 3.97
357 358 8.337532 CCAAAATTGTTCACATTTTCTCTTTCC 58.662 33.333 1.37 0.00 31.45 3.13
358 359 9.097257 TCCAAAATTGTTCACATTTTCTCTTTC 57.903 29.630 1.37 0.00 31.45 2.62
359 360 9.447157 TTCCAAAATTGTTCACATTTTCTCTTT 57.553 25.926 1.37 0.00 31.45 2.52
360 361 9.617523 ATTCCAAAATTGTTCACATTTTCTCTT 57.382 25.926 1.37 0.00 31.45 2.85
363 364 9.829507 TGTATTCCAAAATTGTTCACATTTTCT 57.170 25.926 1.37 0.00 31.45 2.52
367 368 9.388506 TGTTTGTATTCCAAAATTGTTCACATT 57.611 25.926 0.00 0.00 44.36 2.71
368 369 8.954950 TGTTTGTATTCCAAAATTGTTCACAT 57.045 26.923 0.00 0.00 44.36 3.21
369 370 8.954950 ATGTTTGTATTCCAAAATTGTTCACA 57.045 26.923 0.00 0.00 44.36 3.58
395 396 5.744666 AAAATGTTCTCGTCTCCGAAAAA 57.255 34.783 0.00 0.00 43.69 1.94
396 397 5.744666 AAAAATGTTCTCGTCTCCGAAAA 57.255 34.783 0.00 0.00 43.69 2.29
455 456 9.705290 ACAAATTTATAAAAAGGTTCGCATTCT 57.295 25.926 1.21 0.00 0.00 2.40
456 457 9.739786 CACAAATTTATAAAAAGGTTCGCATTC 57.260 29.630 1.21 0.00 0.00 2.67
457 458 9.482627 TCACAAATTTATAAAAAGGTTCGCATT 57.517 25.926 1.21 0.00 0.00 3.56
458 459 9.482627 TTCACAAATTTATAAAAAGGTTCGCAT 57.517 25.926 1.21 0.00 0.00 4.73
459 460 8.756864 GTTCACAAATTTATAAAAAGGTTCGCA 58.243 29.630 1.21 0.00 0.00 5.10
460 461 8.756864 TGTTCACAAATTTATAAAAAGGTTCGC 58.243 29.630 1.21 0.00 0.00 4.70
499 500 9.499585 TCGTTTTTATTTCAAAACATGTTCGTA 57.500 25.926 12.39 0.00 43.90 3.43
500 501 8.395940 TCGTTTTTATTTCAAAACATGTTCGT 57.604 26.923 12.39 0.00 43.90 3.85
501 502 9.676899 TTTCGTTTTTATTTCAAAACATGTTCG 57.323 25.926 12.39 6.59 43.90 3.95
526 527 9.942850 TTTTCTGTTTCTTCTGATTTCCTTTTT 57.057 25.926 0.00 0.00 0.00 1.94
530 531 9.799106 TCTATTTTCTGTTTCTTCTGATTTCCT 57.201 29.630 0.00 0.00 0.00 3.36
563 564 9.421399 TCTCCTTTTCCTGTTTCTTTTTCTATT 57.579 29.630 0.00 0.00 0.00 1.73
564 565 8.996651 TCTCCTTTTCCTGTTTCTTTTTCTAT 57.003 30.769 0.00 0.00 0.00 1.98
565 566 8.817092 TTCTCCTTTTCCTGTTTCTTTTTCTA 57.183 30.769 0.00 0.00 0.00 2.10
566 567 7.718334 TTCTCCTTTTCCTGTTTCTTTTTCT 57.282 32.000 0.00 0.00 0.00 2.52
567 568 8.771920 TTTTCTCCTTTTCCTGTTTCTTTTTC 57.228 30.769 0.00 0.00 0.00 2.29
599 600 2.820197 GAGGTTCCTGAAGCGGATTTTT 59.180 45.455 0.00 0.00 43.06 1.94
600 601 2.437413 GAGGTTCCTGAAGCGGATTTT 58.563 47.619 0.00 0.00 43.06 1.82
601 602 1.340114 GGAGGTTCCTGAAGCGGATTT 60.340 52.381 0.00 0.00 43.06 2.17
602 603 0.253327 GGAGGTTCCTGAAGCGGATT 59.747 55.000 0.00 0.00 43.06 3.01
603 604 1.908483 GGAGGTTCCTGAAGCGGAT 59.092 57.895 0.00 0.00 43.06 4.18
604 605 3.388841 GGAGGTTCCTGAAGCGGA 58.611 61.111 0.00 0.00 43.06 5.54
617 618 4.079970 GGTTTTGGAAACCTTCTAGGAGG 58.920 47.826 16.31 16.31 37.67 4.30
618 619 4.725490 TGGTTTTGGAAACCTTCTAGGAG 58.275 43.478 19.85 0.00 37.67 3.69
619 620 4.414182 TCTGGTTTTGGAAACCTTCTAGGA 59.586 41.667 19.85 8.52 37.67 2.94
620 621 4.725490 TCTGGTTTTGGAAACCTTCTAGG 58.275 43.478 19.85 0.00 42.49 3.02
621 622 6.709018 TTTCTGGTTTTGGAAACCTTCTAG 57.291 37.500 19.85 11.12 40.88 2.43
622 623 7.324935 GTTTTTCTGGTTTTGGAAACCTTCTA 58.675 34.615 19.85 3.03 40.88 2.10
623 624 6.170506 GTTTTTCTGGTTTTGGAAACCTTCT 58.829 36.000 19.85 0.00 40.88 2.85
624 625 5.353123 GGTTTTTCTGGTTTTGGAAACCTTC 59.647 40.000 19.85 6.13 41.55 3.46
625 626 5.221945 TGGTTTTTCTGGTTTTGGAAACCTT 60.222 36.000 19.85 0.00 43.84 3.50
626 627 4.287326 TGGTTTTTCTGGTTTTGGAAACCT 59.713 37.500 19.85 0.00 43.84 3.50
627 628 4.580868 TGGTTTTTCTGGTTTTGGAAACC 58.419 39.130 14.15 14.15 43.79 3.27
628 629 4.094294 GCTGGTTTTTCTGGTTTTGGAAAC 59.906 41.667 0.00 0.00 32.20 2.78
629 630 4.019771 AGCTGGTTTTTCTGGTTTTGGAAA 60.020 37.500 0.00 0.00 0.00 3.13
630 631 3.517500 AGCTGGTTTTTCTGGTTTTGGAA 59.482 39.130 0.00 0.00 0.00 3.53
631 632 3.103742 AGCTGGTTTTTCTGGTTTTGGA 58.896 40.909 0.00 0.00 0.00 3.53
632 633 3.541996 AGCTGGTTTTTCTGGTTTTGG 57.458 42.857 0.00 0.00 0.00 3.28
633 634 4.340950 TCCTAGCTGGTTTTTCTGGTTTTG 59.659 41.667 0.00 0.00 37.07 2.44
634 635 4.542697 TCCTAGCTGGTTTTTCTGGTTTT 58.457 39.130 0.00 0.00 37.07 2.43
635 636 4.178956 TCCTAGCTGGTTTTTCTGGTTT 57.821 40.909 0.00 0.00 37.07 3.27
636 637 3.876309 TCCTAGCTGGTTTTTCTGGTT 57.124 42.857 0.00 0.00 37.07 3.67
637 638 4.043435 AGAATCCTAGCTGGTTTTTCTGGT 59.957 41.667 0.00 0.00 37.07 4.00
638 639 4.593956 AGAATCCTAGCTGGTTTTTCTGG 58.406 43.478 0.00 0.00 37.07 3.86
639 640 5.495640 AGAGAATCCTAGCTGGTTTTTCTG 58.504 41.667 13.45 0.00 37.50 3.02
640 641 5.770685 AGAGAATCCTAGCTGGTTTTTCT 57.229 39.130 0.00 5.07 35.43 2.52
641 642 7.331791 TCTAAGAGAATCCTAGCTGGTTTTTC 58.668 38.462 0.00 2.90 37.07 2.29
642 643 7.259088 TCTAAGAGAATCCTAGCTGGTTTTT 57.741 36.000 0.00 0.00 37.07 1.94
643 644 6.875972 TCTAAGAGAATCCTAGCTGGTTTT 57.124 37.500 0.00 0.00 37.07 2.43
644 645 6.126911 CCTTCTAAGAGAATCCTAGCTGGTTT 60.127 42.308 0.00 0.00 33.13 3.27
645 646 5.365314 CCTTCTAAGAGAATCCTAGCTGGTT 59.635 44.000 0.00 0.00 33.13 3.67
646 647 4.898861 CCTTCTAAGAGAATCCTAGCTGGT 59.101 45.833 0.00 0.00 33.13 4.00
647 648 4.898861 ACCTTCTAAGAGAATCCTAGCTGG 59.101 45.833 0.00 0.00 33.13 4.85
648 649 6.462347 GGAACCTTCTAAGAGAATCCTAGCTG 60.462 46.154 0.00 0.00 33.13 4.24
649 650 5.600898 GGAACCTTCTAAGAGAATCCTAGCT 59.399 44.000 0.00 0.00 33.13 3.32
650 651 5.849510 GGAACCTTCTAAGAGAATCCTAGC 58.150 45.833 1.67 0.00 33.13 3.42
673 674 1.032114 GCTCTCCATCCCGGTTTTGG 61.032 60.000 0.00 4.31 35.57 3.28
674 675 0.035056 AGCTCTCCATCCCGGTTTTG 60.035 55.000 0.00 0.00 35.57 2.44
675 676 0.698818 AAGCTCTCCATCCCGGTTTT 59.301 50.000 0.00 0.00 35.57 2.43
676 677 0.698818 AAAGCTCTCCATCCCGGTTT 59.301 50.000 0.00 0.00 35.57 3.27
677 678 0.698818 AAAAGCTCTCCATCCCGGTT 59.301 50.000 0.00 0.00 35.57 4.44
678 679 0.253327 GAAAAGCTCTCCATCCCGGT 59.747 55.000 0.00 0.00 35.57 5.28
679 680 0.464554 GGAAAAGCTCTCCATCCCGG 60.465 60.000 9.45 0.00 32.77 5.73
680 681 0.253044 TGGAAAAGCTCTCCATCCCG 59.747 55.000 12.42 0.00 38.07 5.14
681 682 2.514458 TTGGAAAAGCTCTCCATCCC 57.486 50.000 16.18 0.00 42.56 3.85
682 683 4.871933 TTTTTGGAAAAGCTCTCCATCC 57.128 40.909 16.18 7.17 42.56 3.51
700 701 2.736531 CCAGCGGGCAAGCTTTTT 59.263 55.556 0.00 0.00 46.80 1.94
701 702 3.305516 CCCAGCGGGCAAGCTTTT 61.306 61.111 0.00 0.00 46.80 2.27
721 722 4.650377 GGATGATCTGGGCCGGCC 62.650 72.222 38.57 38.57 0.00 6.13
722 723 4.650377 GGGATGATCTGGGCCGGC 62.650 72.222 21.18 21.18 0.00 6.13
723 724 2.851102 AGGGATGATCTGGGCCGG 60.851 66.667 5.83 5.83 0.00 6.13
724 725 2.746359 GAGGGATGATCTGGGCCG 59.254 66.667 0.00 0.00 0.00 6.13
725 726 2.746359 CGAGGGATGATCTGGGCC 59.254 66.667 0.00 0.00 0.00 5.80
726 727 2.031768 GCGAGGGATGATCTGGGC 59.968 66.667 0.00 0.00 0.00 5.36
727 728 1.670590 GAGCGAGGGATGATCTGGG 59.329 63.158 0.00 0.00 0.00 4.45
728 729 1.288439 CGAGCGAGGGATGATCTGG 59.712 63.158 0.00 0.00 0.00 3.86
729 730 1.372748 GCGAGCGAGGGATGATCTG 60.373 63.158 0.00 0.00 0.00 2.90
730 731 2.913765 CGCGAGCGAGGGATGATCT 61.914 63.158 12.58 0.00 42.83 2.75
731 732 2.429907 CGCGAGCGAGGGATGATC 60.430 66.667 12.58 0.00 42.83 2.92
732 733 2.907407 TCGCGAGCGAGGGATGAT 60.907 61.111 16.64 0.00 44.01 2.45
751 752 0.955919 GTCGAGCTTTCACCCCAAGG 60.956 60.000 0.00 0.00 40.04 3.61
752 753 0.250295 TGTCGAGCTTTCACCCCAAG 60.250 55.000 0.00 0.00 0.00 3.61
753 754 0.181587 TTGTCGAGCTTTCACCCCAA 59.818 50.000 0.00 0.00 0.00 4.12
754 755 0.534203 GTTGTCGAGCTTTCACCCCA 60.534 55.000 0.00 0.00 0.00 4.96
755 756 0.250338 AGTTGTCGAGCTTTCACCCC 60.250 55.000 0.00 0.00 0.00 4.95
756 757 2.067013 GTAGTTGTCGAGCTTTCACCC 58.933 52.381 0.00 0.00 0.00 4.61
757 758 1.719780 CGTAGTTGTCGAGCTTTCACC 59.280 52.381 0.00 0.00 0.00 4.02
758 759 1.124477 GCGTAGTTGTCGAGCTTTCAC 59.876 52.381 0.00 0.00 0.00 3.18
759 760 1.269361 TGCGTAGTTGTCGAGCTTTCA 60.269 47.619 0.00 0.00 0.00 2.69
760 761 1.387084 CTGCGTAGTTGTCGAGCTTTC 59.613 52.381 0.00 0.00 0.00 2.62
761 762 1.419374 CTGCGTAGTTGTCGAGCTTT 58.581 50.000 0.00 0.00 0.00 3.51
762 763 1.009389 GCTGCGTAGTTGTCGAGCTT 61.009 55.000 1.53 0.00 32.92 3.74
763 764 1.444553 GCTGCGTAGTTGTCGAGCT 60.445 57.895 1.53 0.00 32.92 4.09
764 765 1.078759 ATGCTGCGTAGTTGTCGAGC 61.079 55.000 1.53 0.00 34.64 5.03
765 766 2.188837 TATGCTGCGTAGTTGTCGAG 57.811 50.000 1.53 0.00 0.00 4.04
766 767 2.863401 ATATGCTGCGTAGTTGTCGA 57.137 45.000 7.72 0.00 0.00 4.20
767 768 2.980476 CCTATATGCTGCGTAGTTGTCG 59.020 50.000 7.72 0.00 0.00 4.35
768 769 4.238761 TCCTATATGCTGCGTAGTTGTC 57.761 45.455 7.72 0.00 0.00 3.18
769 770 4.873746 ATCCTATATGCTGCGTAGTTGT 57.126 40.909 7.72 0.00 0.00 3.32
770 771 6.347725 GGAAAATCCTATATGCTGCGTAGTTG 60.348 42.308 7.72 0.60 32.53 3.16
771 772 5.701290 GGAAAATCCTATATGCTGCGTAGTT 59.299 40.000 7.72 0.00 32.53 2.24
772 773 5.221641 TGGAAAATCCTATATGCTGCGTAGT 60.222 40.000 7.72 0.00 37.46 2.73
773 774 5.120830 GTGGAAAATCCTATATGCTGCGTAG 59.879 44.000 7.72 0.00 37.46 3.51
774 775 4.994852 GTGGAAAATCCTATATGCTGCGTA 59.005 41.667 3.73 3.73 37.46 4.42
775 776 3.815401 GTGGAAAATCCTATATGCTGCGT 59.185 43.478 0.00 0.00 37.46 5.24
776 777 3.120546 CGTGGAAAATCCTATATGCTGCG 60.121 47.826 0.00 0.00 37.46 5.18
777 778 3.365364 GCGTGGAAAATCCTATATGCTGC 60.365 47.826 0.00 0.00 37.46 5.25
778 779 4.067896 AGCGTGGAAAATCCTATATGCTG 58.932 43.478 2.22 0.00 37.46 4.41
779 780 4.319177 GAGCGTGGAAAATCCTATATGCT 58.681 43.478 2.57 2.57 37.46 3.79
780 781 3.437049 GGAGCGTGGAAAATCCTATATGC 59.563 47.826 0.00 0.00 37.46 3.14
781 782 4.003648 GGGAGCGTGGAAAATCCTATATG 58.996 47.826 0.00 0.00 37.46 1.78
782 783 3.009143 GGGGAGCGTGGAAAATCCTATAT 59.991 47.826 0.00 0.00 37.46 0.86
783 784 2.370849 GGGGAGCGTGGAAAATCCTATA 59.629 50.000 0.00 0.00 37.46 1.31
784 785 1.143073 GGGGAGCGTGGAAAATCCTAT 59.857 52.381 0.00 0.00 37.46 2.57
785 786 0.544697 GGGGAGCGTGGAAAATCCTA 59.455 55.000 0.00 0.00 37.46 2.94
786 787 1.303282 GGGGAGCGTGGAAAATCCT 59.697 57.895 0.00 0.00 37.46 3.24
787 788 2.112815 CGGGGAGCGTGGAAAATCC 61.113 63.158 0.00 0.00 36.96 3.01
788 789 2.112815 CCGGGGAGCGTGGAAAATC 61.113 63.158 0.00 0.00 0.00 2.17
789 790 2.045340 CCGGGGAGCGTGGAAAAT 60.045 61.111 0.00 0.00 0.00 1.82
798 799 4.925861 GAGCATCAGCCGGGGAGC 62.926 72.222 2.18 0.00 43.56 4.70
799 800 4.598894 CGAGCATCAGCCGGGGAG 62.599 72.222 2.18 0.00 43.56 4.30
801 802 3.088941 TTACGAGCATCAGCCGGGG 62.089 63.158 2.18 0.00 43.56 5.73
802 803 1.883084 GTTACGAGCATCAGCCGGG 60.883 63.158 2.18 0.00 43.56 5.73
803 804 1.883084 GGTTACGAGCATCAGCCGG 60.883 63.158 0.00 0.00 43.56 6.13
804 805 2.230940 CGGTTACGAGCATCAGCCG 61.231 63.158 0.00 0.00 44.60 5.52
805 806 0.739813 AACGGTTACGAGCATCAGCC 60.740 55.000 0.00 0.00 44.60 4.85
806 807 0.645868 GAACGGTTACGAGCATCAGC 59.354 55.000 0.00 0.00 44.60 4.26
807 808 1.920574 CTGAACGGTTACGAGCATCAG 59.079 52.381 0.00 0.00 44.60 2.90
808 809 1.542472 TCTGAACGGTTACGAGCATCA 59.458 47.619 0.00 0.00 44.60 3.07
809 810 2.186076 CTCTGAACGGTTACGAGCATC 58.814 52.381 0.00 0.00 44.60 3.91
810 811 1.135083 CCTCTGAACGGTTACGAGCAT 60.135 52.381 11.38 0.00 44.60 3.79
811 812 0.242825 CCTCTGAACGGTTACGAGCA 59.757 55.000 11.38 0.00 44.60 4.26
812 813 1.077089 GCCTCTGAACGGTTACGAGC 61.077 60.000 11.38 1.46 44.60 5.03
813 814 0.458025 GGCCTCTGAACGGTTACGAG 60.458 60.000 0.00 10.36 44.60 4.18
814 815 1.588082 GGCCTCTGAACGGTTACGA 59.412 57.895 0.00 0.00 44.60 3.43
816 817 1.078637 GGGGCCTCTGAACGGTTAC 60.079 63.158 0.84 0.00 0.00 2.50
817 818 2.652095 CGGGGCCTCTGAACGGTTA 61.652 63.158 0.00 0.00 0.00 2.85
818 819 4.016706 CGGGGCCTCTGAACGGTT 62.017 66.667 0.00 0.00 0.00 4.44
855 856 2.502080 CGTCGGTCGTGAGCTCAC 60.502 66.667 32.73 32.73 43.15 3.51
856 857 2.667199 TCGTCGGTCGTGAGCTCA 60.667 61.111 13.74 13.74 40.80 4.26
857 858 2.098680 CTCGTCGGTCGTGAGCTC 59.901 66.667 6.82 6.82 40.80 4.09
860 861 4.813526 CGGCTCGTCGGTCGTGAG 62.814 72.222 1.19 9.64 40.80 3.51
910 911 4.176851 GCTCGGTCGACCTCGGTC 62.177 72.222 30.92 12.36 41.40 4.79
931 932 3.060615 GACCTGCAGCCAGCCTTG 61.061 66.667 8.66 0.00 44.83 3.61
932 933 2.833604 GATGACCTGCAGCCAGCCTT 62.834 60.000 8.66 0.00 44.83 4.35
933 934 3.336568 ATGACCTGCAGCCAGCCT 61.337 61.111 8.66 0.00 44.83 4.58
934 935 2.827642 GATGACCTGCAGCCAGCC 60.828 66.667 8.66 1.52 44.83 4.85
935 936 1.818785 GAGATGACCTGCAGCCAGC 60.819 63.158 8.66 11.20 45.96 4.85
944 945 1.938657 CTCGTGCACGGAGATGACCT 61.939 60.000 36.41 0.00 40.29 3.85
945 946 1.517257 CTCGTGCACGGAGATGACC 60.517 63.158 36.41 0.00 40.29 4.02
950 951 2.983592 TGAGCTCGTGCACGGAGA 60.984 61.111 36.41 18.59 42.74 3.71
1139 1192 1.271054 CCGAGATGGGATTCATGGACC 60.271 57.143 0.00 0.00 35.97 4.46
1164 1217 2.937689 ATCTGGGGTGTGCCAGCT 60.938 61.111 0.00 0.00 36.17 4.24
1165 1218 2.439156 GATCTGGGGTGTGCCAGC 60.439 66.667 0.00 0.00 36.17 4.85
1166 1219 2.141011 TTGGATCTGGGGTGTGCCAG 62.141 60.000 0.00 0.00 36.17 4.85
1167 1220 2.159490 TTGGATCTGGGGTGTGCCA 61.159 57.895 0.00 0.00 36.17 4.92
1168 1221 1.678970 GTTGGATCTGGGGTGTGCC 60.679 63.158 0.00 0.00 0.00 5.01
1205 1258 3.184986 TCGCTTTGTTTTCCTAACGCTAC 59.815 43.478 0.00 0.00 0.00 3.58
1210 1263 3.285745 CGTGTCGCTTTGTTTTCCTAAC 58.714 45.455 0.00 0.00 0.00 2.34
1280 1333 0.678048 GAACAGCAAGCCACCTAGGG 60.678 60.000 14.81 1.73 38.09 3.53
1282 1335 1.808945 CAAGAACAGCAAGCCACCTAG 59.191 52.381 0.00 0.00 0.00 3.02
1292 1345 2.892334 GCGCGAACCAAGAACAGCA 61.892 57.895 12.10 0.00 0.00 4.41
1316 1369 1.865865 ACGCATTCTGTCGAACAGTT 58.134 45.000 12.62 0.00 46.03 3.16
1401 1454 1.376037 GCCTTGGTGACCCGAGAAG 60.376 63.158 0.00 0.00 44.19 2.85
1433 1486 1.207791 GGGAATCCTCCTCTGAAGCA 58.792 55.000 0.00 0.00 42.05 3.91
1515 1568 2.614057 CAAACTGACGAAGGTCTTTGCT 59.386 45.455 0.00 0.00 43.79 3.91
1625 1678 2.669133 ATACGAAGGCAGCCTGGCA 61.669 57.895 22.65 0.76 46.46 4.92
1629 1682 1.144936 GCTCATACGAAGGCAGCCT 59.855 57.895 8.70 8.70 33.87 4.58
1655 1708 2.383855 AGCATCTCAGTGTAGGTCCTC 58.616 52.381 0.00 0.00 0.00 3.71
1715 1768 3.030291 AGGAATCTCATCGAAGAGCTGT 58.970 45.455 12.74 0.43 43.63 4.40
1865 1918 4.536090 AGTATCTGGAATCCAACCAAGTCA 59.464 41.667 2.61 0.00 36.95 3.41
1961 2014 2.768527 CCAGCTCTTTATGACAGGAGGA 59.231 50.000 0.00 0.00 0.00 3.71
2063 2116 1.053424 TGAACAGGTCCGGCTTAAGT 58.947 50.000 4.02 0.00 0.00 2.24
2516 2569 9.429359 CCCTTCTCATATTTCATACTGACATAC 57.571 37.037 0.00 0.00 0.00 2.39
2896 2949 3.254166 CCAAGGTTGAAAGTCACTGGATG 59.746 47.826 0.00 0.00 0.00 3.51
2909 2962 4.526650 GGATTTCTTTTAGCCCAAGGTTGA 59.473 41.667 0.00 0.00 0.00 3.18
3097 3150 8.696175 CAACTACGAACGACATATATAATGCAA 58.304 33.333 0.14 0.00 0.00 4.08
3179 3232 4.578928 TCACTTAGCAAACCTTTCCAGTTC 59.421 41.667 0.00 0.00 0.00 3.01
3182 3235 4.761739 TCATCACTTAGCAAACCTTTCCAG 59.238 41.667 0.00 0.00 0.00 3.86
3185 3238 7.467623 CAGTATCATCACTTAGCAAACCTTTC 58.532 38.462 0.00 0.00 0.00 2.62
3192 3245 4.080919 ACCAGCAGTATCATCACTTAGCAA 60.081 41.667 0.00 0.00 0.00 3.91
3222 3275 3.625764 GCTCAACTGGTAATTATTCGCCA 59.374 43.478 0.00 2.22 0.00 5.69
3267 3320 8.553459 ACAAATGTGAATTGGACTAGACTAAG 57.447 34.615 0.00 0.00 32.02 2.18
3301 3354 6.153680 TCAACAGAAACAAAAGGTGGTACAAT 59.846 34.615 0.00 0.00 44.16 2.71
3334 3387 7.966812 ACTGTGTAGCCATTCATTGATAGATA 58.033 34.615 0.00 0.00 0.00 1.98
3386 3439 1.133513 TGGCTGATGGAACTGTGGTTT 60.134 47.619 0.00 0.00 35.58 3.27
3426 3479 7.417570 GGTCAATTGCTTACCTAGTAGCTTCTA 60.418 40.741 0.00 0.00 0.00 2.10
3462 3515 2.263741 GGTGGTTCAGTGGCAGCAG 61.264 63.158 0.00 0.00 0.00 4.24
3472 3525 0.402504 AATAAGTGGCGGGTGGTTCA 59.597 50.000 0.00 0.00 0.00 3.18
3571 3624 7.874528 CCTTCCTCAAAAAGCAAAATTGATACT 59.125 33.333 0.00 0.00 33.03 2.12
3572 3625 7.872483 TCCTTCCTCAAAAAGCAAAATTGATAC 59.128 33.333 0.00 0.00 33.03 2.24
3749 3813 4.350368 TGTCACAATTTAGTCAGCCTGA 57.650 40.909 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.