Multiple sequence alignment - TraesCS3B01G092300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G092300 chr3B 100.000 2399 0 0 1 2399 61533792 61531394 0.000000e+00 4431.0
1 TraesCS3B01G092300 chr3B 93.519 108 7 0 2209 2316 829425416 829425523 6.860000e-36 161.0
2 TraesCS3B01G092300 chr3B 92.222 90 5 1 1 90 455125423 455125510 2.500000e-25 126.0
3 TraesCS3B01G092300 chr3A 91.576 1009 40 23 601 1600 49971916 49970944 0.000000e+00 1351.0
4 TraesCS3B01G092300 chr3A 87.921 505 44 8 1723 2220 49970115 49969621 1.600000e-161 579.0
5 TraesCS3B01G092300 chr3A 91.453 117 6 2 538 654 49972405 49972293 8.880000e-35 158.0
6 TraesCS3B01G092300 chr3A 89.062 128 9 4 654 781 49972231 49972109 1.150000e-33 154.0
7 TraesCS3B01G092300 chr3A 75.735 408 41 31 1189 1586 49504090 49503731 4.130000e-33 152.0
8 TraesCS3B01G092300 chr3A 96.552 87 3 0 2313 2399 49969623 49969537 6.910000e-31 145.0
9 TraesCS3B01G092300 chr3A 92.135 89 5 1 2 90 507659600 507659514 9.000000e-25 124.0
10 TraesCS3B01G092300 chr3A 87.342 79 10 0 773 851 49610076 49609998 9.130000e-15 91.6
11 TraesCS3B01G092300 chr3D 90.422 971 61 17 691 1648 38603648 38602697 0.000000e+00 1249.0
12 TraesCS3B01G092300 chr3D 86.424 987 53 29 691 1648 38626051 38625117 0.000000e+00 1005.0
13 TraesCS3B01G092300 chr3D 91.207 580 31 8 1646 2220 38624675 38624111 0.000000e+00 771.0
14 TraesCS3B01G092300 chr3D 90.153 589 46 6 1635 2220 38602672 38602093 0.000000e+00 756.0
15 TraesCS3B01G092300 chr3D 89.627 241 15 4 657 897 38610601 38610371 5.010000e-77 298.0
16 TraesCS3B01G092300 chr3D 98.837 86 1 0 2313 2398 38602095 38602010 1.150000e-33 154.0
17 TraesCS3B01G092300 chr3D 96.552 87 3 0 2313 2399 38624113 38624027 6.910000e-31 145.0
18 TraesCS3B01G092300 chr3D 86.905 84 11 0 768 851 38374775 38374692 7.060000e-16 95.3
19 TraesCS3B01G092300 chr3D 80.909 110 13 6 2071 2173 435341931 435341823 1.980000e-11 80.5
20 TraesCS3B01G092300 chr7D 85.630 508 45 15 1447 1934 14796949 14797448 2.130000e-140 508.0
21 TraesCS3B01G092300 chr7D 91.393 244 14 3 1694 1934 14801997 14802236 6.390000e-86 327.0
22 TraesCS3B01G092300 chr7D 90.517 116 8 2 2218 2330 426783573 426783458 1.490000e-32 150.0
23 TraesCS3B01G092300 chr7D 94.444 90 3 1 1 90 72466611 72466698 1.160000e-28 137.0
24 TraesCS3B01G092300 chr7D 93.333 90 4 1 1 90 431041717 431041804 5.380000e-27 132.0
25 TraesCS3B01G092300 chr7D 92.222 90 5 1 1 90 180854218 180854305 2.500000e-25 126.0
26 TraesCS3B01G092300 chr7D 84.043 94 10 4 2081 2173 463709383 463709294 4.250000e-13 86.1
27 TraesCS3B01G092300 chr7D 86.765 68 6 3 328 393 500591674 500591608 3.310000e-09 73.1
28 TraesCS3B01G092300 chr7D 97.561 41 1 0 1635 1675 14797177 14797217 1.190000e-08 71.3
29 TraesCS3B01G092300 chr7B 93.578 109 6 1 2218 2325 237489311 237489419 6.860000e-36 161.0
30 TraesCS3B01G092300 chr7B 94.444 90 3 1 1 90 705370386 705370299 1.160000e-28 137.0
31 TraesCS3B01G092300 chr7B 93.333 90 4 1 1 90 8939276 8939363 5.380000e-27 132.0
32 TraesCS3B01G092300 chr6B 92.661 109 8 0 2219 2327 424084188 424084080 8.880000e-35 158.0
33 TraesCS3B01G092300 chr6B 92.661 109 8 0 2219 2327 424306886 424306778 8.880000e-35 158.0
34 TraesCS3B01G092300 chr6B 91.667 108 8 1 2217 2324 276668819 276668925 5.340000e-32 148.0
35 TraesCS3B01G092300 chr1B 88.372 129 13 2 2197 2324 429278886 429279013 1.150000e-33 154.0
36 TraesCS3B01G092300 chr5D 93.814 97 6 0 2219 2315 205794646 205794742 1.920000e-31 147.0
37 TraesCS3B01G092300 chr5D 85.897 78 5 6 2126 2200 378327555 378327481 7.110000e-11 78.7
38 TraesCS3B01G092300 chr2B 89.167 120 10 3 2218 2335 439316996 439316878 1.920000e-31 147.0
39 TraesCS3B01G092300 chr2B 94.444 90 3 1 1 90 741527784 741527697 1.160000e-28 137.0
40 TraesCS3B01G092300 chr5B 92.222 90 5 1 1 90 381067034 381067121 2.500000e-25 126.0
41 TraesCS3B01G092300 chr4D 84.762 105 7 6 2123 2222 446174389 446174489 1.960000e-16 97.1
42 TraesCS3B01G092300 chr6D 86.585 82 9 2 2092 2173 445157320 445157399 3.280000e-14 89.8
43 TraesCS3B01G092300 chr4A 83.000 100 8 6 2126 2220 21201874 21201779 5.500000e-12 82.4
44 TraesCS3B01G092300 chr7A 85.075 67 9 1 328 393 566354630 566354564 1.540000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G092300 chr3B 61531394 61533792 2398 True 4431.000000 4431 100.000000 1 2399 1 chr3B.!!$R1 2398
1 TraesCS3B01G092300 chr3A 49969537 49972405 2868 True 477.400000 1351 91.312800 538 2399 5 chr3A.!!$R4 1861
2 TraesCS3B01G092300 chr3D 38602010 38603648 1638 True 719.666667 1249 93.137333 691 2398 3 chr3D.!!$R4 1707
3 TraesCS3B01G092300 chr3D 38624027 38626051 2024 True 640.333333 1005 91.394333 691 2399 3 chr3D.!!$R5 1708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.04394 AGCTGGATCCTCCCTCTTGT 59.956 55.0 14.23 0.0 35.03 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1417 1876 1.402259 CTCGAGTGGTCTAGCGTCATT 59.598 52.381 3.62 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.474226 GGCGATGATGATTAACCTTGAC 57.526 45.455 0.00 0.00 0.00 3.18
22 23 4.130118 GGCGATGATGATTAACCTTGACT 58.870 43.478 0.00 0.00 0.00 3.41
23 24 4.024556 GGCGATGATGATTAACCTTGACTG 60.025 45.833 0.00 0.00 0.00 3.51
24 25 4.811024 GCGATGATGATTAACCTTGACTGA 59.189 41.667 0.00 0.00 0.00 3.41
25 26 5.294306 GCGATGATGATTAACCTTGACTGAA 59.706 40.000 0.00 0.00 0.00 3.02
26 27 6.183360 GCGATGATGATTAACCTTGACTGAAA 60.183 38.462 0.00 0.00 0.00 2.69
27 28 7.467811 GCGATGATGATTAACCTTGACTGAAAT 60.468 37.037 0.00 0.00 0.00 2.17
28 29 9.045223 CGATGATGATTAACCTTGACTGAAATA 57.955 33.333 0.00 0.00 0.00 1.40
31 32 9.739276 TGATGATTAACCTTGACTGAAATAAGT 57.261 29.630 0.00 0.00 0.00 2.24
32 33 9.994432 GATGATTAACCTTGACTGAAATAAGTG 57.006 33.333 0.00 0.00 0.00 3.16
33 34 8.918202 TGATTAACCTTGACTGAAATAAGTGT 57.082 30.769 0.00 0.00 0.00 3.55
34 35 8.783093 TGATTAACCTTGACTGAAATAAGTGTG 58.217 33.333 0.00 0.00 0.00 3.82
35 36 5.438761 AACCTTGACTGAAATAAGTGTGC 57.561 39.130 0.00 0.00 0.00 4.57
36 37 3.821033 ACCTTGACTGAAATAAGTGTGCC 59.179 43.478 0.00 0.00 0.00 5.01
37 38 4.074970 CCTTGACTGAAATAAGTGTGCCT 58.925 43.478 0.00 0.00 0.00 4.75
38 39 4.520492 CCTTGACTGAAATAAGTGTGCCTT 59.480 41.667 0.00 0.00 37.17 4.35
39 40 5.010012 CCTTGACTGAAATAAGTGTGCCTTT 59.990 40.000 0.00 0.00 34.46 3.11
40 41 5.437289 TGACTGAAATAAGTGTGCCTTTG 57.563 39.130 0.00 0.00 34.46 2.77
41 42 5.129634 TGACTGAAATAAGTGTGCCTTTGA 58.870 37.500 0.00 0.00 34.46 2.69
42 43 5.239306 TGACTGAAATAAGTGTGCCTTTGAG 59.761 40.000 0.00 0.00 34.46 3.02
43 44 4.022849 ACTGAAATAAGTGTGCCTTTGAGC 60.023 41.667 0.00 0.00 34.46 4.26
44 45 3.888323 TGAAATAAGTGTGCCTTTGAGCA 59.112 39.130 0.00 0.00 41.46 4.26
45 46 4.340666 TGAAATAAGTGTGCCTTTGAGCAA 59.659 37.500 0.00 0.00 46.19 3.91
46 47 5.010922 TGAAATAAGTGTGCCTTTGAGCAAT 59.989 36.000 0.00 0.00 46.19 3.56
47 48 4.708726 ATAAGTGTGCCTTTGAGCAATC 57.291 40.909 0.00 0.00 46.19 2.67
48 49 0.877071 AGTGTGCCTTTGAGCAATCG 59.123 50.000 0.00 0.00 46.19 3.34
49 50 0.874390 GTGTGCCTTTGAGCAATCGA 59.126 50.000 0.00 0.00 46.19 3.59
50 51 1.135859 GTGTGCCTTTGAGCAATCGAG 60.136 52.381 0.00 0.00 46.19 4.04
51 52 1.160137 GTGCCTTTGAGCAATCGAGT 58.840 50.000 0.00 0.00 46.19 4.18
52 53 1.129437 GTGCCTTTGAGCAATCGAGTC 59.871 52.381 0.00 0.00 46.19 3.36
53 54 1.270785 TGCCTTTGAGCAATCGAGTCA 60.271 47.619 0.00 0.00 40.56 3.41
54 55 1.129437 GCCTTTGAGCAATCGAGTCAC 59.871 52.381 0.00 0.00 0.00 3.67
55 56 1.734465 CCTTTGAGCAATCGAGTCACC 59.266 52.381 0.00 0.00 0.00 4.02
56 57 2.613977 CCTTTGAGCAATCGAGTCACCT 60.614 50.000 0.00 0.00 0.00 4.00
57 58 3.368427 CCTTTGAGCAATCGAGTCACCTA 60.368 47.826 0.00 0.00 0.00 3.08
58 59 4.437239 CTTTGAGCAATCGAGTCACCTAT 58.563 43.478 0.00 0.00 0.00 2.57
59 60 3.443099 TGAGCAATCGAGTCACCTATG 57.557 47.619 0.00 0.00 0.00 2.23
60 61 2.101415 TGAGCAATCGAGTCACCTATGG 59.899 50.000 0.00 0.00 0.00 2.74
61 62 1.414181 AGCAATCGAGTCACCTATGGG 59.586 52.381 0.00 0.00 38.88 4.00
62 63 1.541233 GCAATCGAGTCACCTATGGGG 60.541 57.143 0.00 0.00 41.89 4.96
63 64 1.070758 CAATCGAGTCACCTATGGGGG 59.929 57.143 0.00 0.00 40.03 5.40
64 65 0.264955 ATCGAGTCACCTATGGGGGT 59.735 55.000 0.00 0.00 40.73 4.95
65 66 0.928505 TCGAGTCACCTATGGGGGTA 59.071 55.000 0.00 0.00 37.52 3.69
66 67 1.502039 TCGAGTCACCTATGGGGGTAT 59.498 52.381 0.00 0.00 37.52 2.73
67 68 1.893801 CGAGTCACCTATGGGGGTATC 59.106 57.143 0.00 0.00 37.52 2.24
68 69 2.755208 CGAGTCACCTATGGGGGTATCA 60.755 54.545 0.00 0.00 37.52 2.15
69 70 3.314693 GAGTCACCTATGGGGGTATCAA 58.685 50.000 0.00 0.00 37.52 2.57
70 71 3.318313 AGTCACCTATGGGGGTATCAAG 58.682 50.000 0.00 0.00 37.52 3.02
71 72 2.054799 TCACCTATGGGGGTATCAAGC 58.945 52.381 0.00 0.00 37.52 4.01
72 73 2.057922 CACCTATGGGGGTATCAAGCT 58.942 52.381 0.00 0.00 37.52 3.74
73 74 2.057922 ACCTATGGGGGTATCAAGCTG 58.942 52.381 0.00 0.00 37.90 4.24
74 75 1.352352 CCTATGGGGGTATCAAGCTGG 59.648 57.143 0.00 0.00 0.00 4.85
75 76 2.338809 CTATGGGGGTATCAAGCTGGA 58.661 52.381 0.00 0.00 0.00 3.86
76 77 1.838611 ATGGGGGTATCAAGCTGGAT 58.161 50.000 9.05 9.05 0.00 3.41
77 78 1.140312 TGGGGGTATCAAGCTGGATC 58.860 55.000 6.94 0.00 0.00 3.36
78 79 0.402121 GGGGGTATCAAGCTGGATCC 59.598 60.000 6.94 4.20 0.00 3.36
79 80 1.439543 GGGGTATCAAGCTGGATCCT 58.560 55.000 14.23 0.00 0.00 3.24
80 81 1.349357 GGGGTATCAAGCTGGATCCTC 59.651 57.143 14.23 5.32 0.00 3.71
81 82 1.349357 GGGTATCAAGCTGGATCCTCC 59.651 57.143 14.23 8.87 36.96 4.30
82 83 1.349357 GGTATCAAGCTGGATCCTCCC 59.651 57.143 14.23 0.14 35.03 4.30
83 84 2.334023 GTATCAAGCTGGATCCTCCCT 58.666 52.381 14.23 3.43 35.03 4.20
84 85 1.433121 ATCAAGCTGGATCCTCCCTC 58.567 55.000 14.23 0.00 35.03 4.30
85 86 0.341258 TCAAGCTGGATCCTCCCTCT 59.659 55.000 14.23 0.00 35.03 3.69
86 87 1.211456 CAAGCTGGATCCTCCCTCTT 58.789 55.000 14.23 6.08 35.03 2.85
87 88 1.134159 CAAGCTGGATCCTCCCTCTTG 60.134 57.143 14.23 13.69 37.99 3.02
88 89 0.043940 AGCTGGATCCTCCCTCTTGT 59.956 55.000 14.23 0.00 35.03 3.16
89 90 0.467804 GCTGGATCCTCCCTCTTGTC 59.532 60.000 14.23 0.00 35.03 3.18
90 91 1.871418 CTGGATCCTCCCTCTTGTCA 58.129 55.000 14.23 0.00 35.03 3.58
91 92 1.484240 CTGGATCCTCCCTCTTGTCAC 59.516 57.143 14.23 0.00 35.03 3.67
92 93 0.833949 GGATCCTCCCTCTTGTCACC 59.166 60.000 3.84 0.00 0.00 4.02
93 94 0.461961 GATCCTCCCTCTTGTCACCG 59.538 60.000 0.00 0.00 0.00 4.94
94 95 0.978146 ATCCTCCCTCTTGTCACCGG 60.978 60.000 0.00 0.00 0.00 5.28
95 96 2.266055 CTCCCTCTTGTCACCGGC 59.734 66.667 0.00 0.00 0.00 6.13
96 97 2.203788 TCCCTCTTGTCACCGGCT 60.204 61.111 0.00 0.00 0.00 5.52
97 98 1.831652 CTCCCTCTTGTCACCGGCTT 61.832 60.000 0.00 0.00 0.00 4.35
98 99 1.376037 CCCTCTTGTCACCGGCTTC 60.376 63.158 0.00 0.00 0.00 3.86
99 100 1.738099 CCTCTTGTCACCGGCTTCG 60.738 63.158 0.00 0.00 0.00 3.79
100 101 1.289066 CTCTTGTCACCGGCTTCGA 59.711 57.895 0.00 0.00 35.61 3.71
101 102 0.319555 CTCTTGTCACCGGCTTCGAA 60.320 55.000 0.00 0.00 35.61 3.71
102 103 0.320374 TCTTGTCACCGGCTTCGAAT 59.680 50.000 0.00 0.00 35.61 3.34
103 104 1.156736 CTTGTCACCGGCTTCGAATT 58.843 50.000 0.00 0.00 35.61 2.17
104 105 1.128692 CTTGTCACCGGCTTCGAATTC 59.871 52.381 0.00 0.00 35.61 2.17
105 106 1.011968 TGTCACCGGCTTCGAATTCG 61.012 55.000 21.78 21.78 41.45 3.34
106 107 2.098233 TCACCGGCTTCGAATTCGC 61.098 57.895 22.90 9.05 39.60 4.70
107 108 2.047655 ACCGGCTTCGAATTCGCA 60.048 55.556 22.90 11.75 39.60 5.10
108 109 1.669760 ACCGGCTTCGAATTCGCAA 60.670 52.632 22.90 15.74 39.60 4.85
109 110 1.226018 CCGGCTTCGAATTCGCAAC 60.226 57.895 22.90 13.18 39.60 4.17
110 111 1.495509 CGGCTTCGAATTCGCAACA 59.504 52.632 22.90 2.67 39.60 3.33
111 112 0.096976 CGGCTTCGAATTCGCAACAT 59.903 50.000 22.90 0.00 39.60 2.71
112 113 1.815132 GGCTTCGAATTCGCAACATC 58.185 50.000 22.90 8.11 39.60 3.06
113 114 1.398390 GGCTTCGAATTCGCAACATCT 59.602 47.619 22.90 0.00 39.60 2.90
114 115 2.434761 GCTTCGAATTCGCAACATCTG 58.565 47.619 22.90 0.42 39.60 2.90
123 124 3.975992 GCAACATCTGCGTACCAAG 57.024 52.632 0.00 0.00 42.37 3.61
124 125 0.447801 GCAACATCTGCGTACCAAGG 59.552 55.000 0.00 0.00 42.37 3.61
125 126 1.086696 CAACATCTGCGTACCAAGGG 58.913 55.000 0.00 0.00 0.00 3.95
126 127 0.981183 AACATCTGCGTACCAAGGGA 59.019 50.000 0.00 0.00 0.00 4.20
127 128 0.981183 ACATCTGCGTACCAAGGGAA 59.019 50.000 0.00 0.00 0.00 3.97
128 129 1.066143 ACATCTGCGTACCAAGGGAAG 60.066 52.381 0.00 0.00 0.00 3.46
129 130 1.207089 CATCTGCGTACCAAGGGAAGA 59.793 52.381 0.00 0.00 0.00 2.87
130 131 1.568504 TCTGCGTACCAAGGGAAGAT 58.431 50.000 0.00 0.00 0.00 2.40
131 132 1.480954 TCTGCGTACCAAGGGAAGATC 59.519 52.381 0.00 0.00 0.00 2.75
132 133 1.207089 CTGCGTACCAAGGGAAGATCA 59.793 52.381 0.00 0.00 0.00 2.92
133 134 1.837439 TGCGTACCAAGGGAAGATCAT 59.163 47.619 0.00 0.00 0.00 2.45
134 135 2.238646 TGCGTACCAAGGGAAGATCATT 59.761 45.455 0.00 0.00 0.00 2.57
135 136 3.452990 TGCGTACCAAGGGAAGATCATTA 59.547 43.478 0.00 0.00 0.00 1.90
136 137 4.080807 TGCGTACCAAGGGAAGATCATTAA 60.081 41.667 0.00 0.00 0.00 1.40
137 138 5.063880 GCGTACCAAGGGAAGATCATTAAT 58.936 41.667 0.00 0.00 0.00 1.40
138 139 5.179555 GCGTACCAAGGGAAGATCATTAATC 59.820 44.000 0.00 0.00 34.30 1.75
139 140 6.288294 CGTACCAAGGGAAGATCATTAATCA 58.712 40.000 0.00 0.00 36.79 2.57
140 141 6.202954 CGTACCAAGGGAAGATCATTAATCAC 59.797 42.308 0.00 0.00 36.79 3.06
141 142 6.332976 ACCAAGGGAAGATCATTAATCACT 57.667 37.500 0.00 0.00 36.79 3.41
142 143 7.451731 ACCAAGGGAAGATCATTAATCACTA 57.548 36.000 0.00 0.00 36.79 2.74
143 144 7.512992 ACCAAGGGAAGATCATTAATCACTAG 58.487 38.462 0.00 0.00 36.79 2.57
144 145 6.939163 CCAAGGGAAGATCATTAATCACTAGG 59.061 42.308 0.00 0.00 36.79 3.02
145 146 7.420680 CCAAGGGAAGATCATTAATCACTAGGT 60.421 40.741 0.00 0.00 36.79 3.08
146 147 7.698163 AGGGAAGATCATTAATCACTAGGTT 57.302 36.000 0.00 0.00 36.79 3.50
147 148 8.798975 AGGGAAGATCATTAATCACTAGGTTA 57.201 34.615 0.00 0.00 36.79 2.85
148 149 9.398921 AGGGAAGATCATTAATCACTAGGTTAT 57.601 33.333 0.00 0.00 36.79 1.89
149 150 9.660180 GGGAAGATCATTAATCACTAGGTTATC 57.340 37.037 0.00 0.00 36.79 1.75
150 151 9.660180 GGAAGATCATTAATCACTAGGTTATCC 57.340 37.037 0.00 0.00 36.79 2.59
151 152 9.660180 GAAGATCATTAATCACTAGGTTATCCC 57.340 37.037 0.00 0.00 36.79 3.85
152 153 8.742125 AGATCATTAATCACTAGGTTATCCCA 57.258 34.615 0.00 0.00 36.79 4.37
153 154 9.170890 AGATCATTAATCACTAGGTTATCCCAA 57.829 33.333 0.00 0.00 36.79 4.12
154 155 9.965902 GATCATTAATCACTAGGTTATCCCAAT 57.034 33.333 0.00 0.00 34.26 3.16
160 161 7.691993 ATCACTAGGTTATCCCAATAGTTGT 57.308 36.000 0.00 0.00 34.66 3.32
161 162 6.884832 TCACTAGGTTATCCCAATAGTTGTG 58.115 40.000 0.00 0.00 34.66 3.33
162 163 6.670464 TCACTAGGTTATCCCAATAGTTGTGA 59.330 38.462 0.00 0.00 34.66 3.58
163 164 7.181305 TCACTAGGTTATCCCAATAGTTGTGAA 59.819 37.037 0.00 0.00 34.66 3.18
164 165 7.827236 CACTAGGTTATCCCAATAGTTGTGAAA 59.173 37.037 0.00 0.00 34.66 2.69
165 166 7.827729 ACTAGGTTATCCCAATAGTTGTGAAAC 59.172 37.037 0.00 0.00 34.66 2.78
166 167 6.548321 AGGTTATCCCAATAGTTGTGAAACA 58.452 36.000 0.00 0.00 40.29 2.83
167 168 6.433093 AGGTTATCCCAATAGTTGTGAAACAC 59.567 38.462 0.00 0.00 41.49 3.32
168 169 7.694293 AGGTTATCCCAATAGTTGTGAAACACT 60.694 37.037 0.00 0.00 41.49 3.55
182 183 7.778470 TGTGAAACACTTGTGTTTTTCTTTT 57.222 28.000 26.06 8.45 45.67 2.27
183 184 8.873215 TGTGAAACACTTGTGTTTTTCTTTTA 57.127 26.923 26.06 11.07 45.67 1.52
184 185 9.482627 TGTGAAACACTTGTGTTTTTCTTTTAT 57.517 25.926 26.06 7.21 45.67 1.40
231 232 8.934507 TTTTTGGACGTTTTTACTCATTCATT 57.065 26.923 0.00 0.00 0.00 2.57
232 233 8.568732 TTTTGGACGTTTTTACTCATTCATTC 57.431 30.769 0.00 0.00 0.00 2.67
233 234 6.869315 TGGACGTTTTTACTCATTCATTCA 57.131 33.333 0.00 0.00 0.00 2.57
234 235 7.447374 TGGACGTTTTTACTCATTCATTCAT 57.553 32.000 0.00 0.00 0.00 2.57
235 236 7.881142 TGGACGTTTTTACTCATTCATTCATT 58.119 30.769 0.00 0.00 0.00 2.57
236 237 8.356657 TGGACGTTTTTACTCATTCATTCATTT 58.643 29.630 0.00 0.00 0.00 2.32
237 238 9.191995 GGACGTTTTTACTCATTCATTCATTTT 57.808 29.630 0.00 0.00 0.00 1.82
287 288 9.947433 TTCATTTTTCTTAAATGCATGGATTCT 57.053 25.926 13.26 6.41 37.50 2.40
288 289 9.947433 TCATTTTTCTTAAATGCATGGATTCTT 57.053 25.926 13.26 1.06 37.50 2.52
302 303 8.871862 TGCATGGATTCTTTTAAAATTCAATCG 58.128 29.630 0.09 0.70 0.00 3.34
303 304 9.086336 GCATGGATTCTTTTAAAATTCAATCGA 57.914 29.630 0.09 7.57 0.00 3.59
319 320 6.338214 TCAATCGATGAAACATTTTTCCCA 57.662 33.333 0.00 0.00 40.55 4.37
320 321 6.753180 TCAATCGATGAAACATTTTTCCCAA 58.247 32.000 0.00 0.00 40.55 4.12
321 322 7.212976 TCAATCGATGAAACATTTTTCCCAAA 58.787 30.769 0.00 0.00 40.55 3.28
322 323 7.712639 TCAATCGATGAAACATTTTTCCCAAAA 59.287 29.630 0.00 0.00 40.55 2.44
323 324 8.505625 CAATCGATGAAACATTTTTCCCAAAAT 58.494 29.630 0.00 0.00 42.37 1.82
324 325 8.620116 ATCGATGAAACATTTTTCCCAAAATT 57.380 26.923 0.00 0.00 40.09 1.82
325 326 8.082334 TCGATGAAACATTTTTCCCAAAATTC 57.918 30.769 2.00 0.00 40.09 2.17
326 327 7.712639 TCGATGAAACATTTTTCCCAAAATTCA 59.287 29.630 2.00 0.00 40.09 2.57
327 328 8.505625 CGATGAAACATTTTTCCCAAAATTCAT 58.494 29.630 2.00 7.51 40.09 2.57
332 333 9.814899 AAACATTTTTCCCAAAATTCATTTTCC 57.185 25.926 0.00 0.00 40.09 3.13
333 334 8.530804 ACATTTTTCCCAAAATTCATTTTCCA 57.469 26.923 0.00 0.00 40.09 3.53
334 335 8.975295 ACATTTTTCCCAAAATTCATTTTCCAA 58.025 25.926 0.00 0.00 40.09 3.53
335 336 9.813446 CATTTTTCCCAAAATTCATTTTCCAAA 57.187 25.926 0.00 0.00 40.09 3.28
339 340 8.757982 TTCCCAAAATTCATTTTCCAAATTCA 57.242 26.923 0.00 0.00 37.86 2.57
340 341 8.937207 TCCCAAAATTCATTTTCCAAATTCAT 57.063 26.923 0.00 0.00 37.86 2.57
341 342 8.794553 TCCCAAAATTCATTTTCCAAATTCATG 58.205 29.630 0.00 0.00 37.86 3.07
342 343 8.794553 CCCAAAATTCATTTTCCAAATTCATGA 58.205 29.630 0.00 0.00 37.86 3.07
378 379 9.903682 CAGATAGATGAACTTTTTCAAATGTGT 57.096 29.630 0.00 0.00 45.01 3.72
379 380 9.903682 AGATAGATGAACTTTTTCAAATGTGTG 57.096 29.630 0.00 0.00 45.01 3.82
380 381 9.897744 GATAGATGAACTTTTTCAAATGTGTGA 57.102 29.630 0.00 0.00 45.01 3.58
382 383 8.411318 AGATGAACTTTTTCAAATGTGTGAAC 57.589 30.769 0.00 0.00 45.01 3.18
383 384 8.253113 AGATGAACTTTTTCAAATGTGTGAACT 58.747 29.630 0.00 0.00 45.01 3.01
384 385 8.776376 ATGAACTTTTTCAAATGTGTGAACTT 57.224 26.923 0.00 0.00 45.01 2.66
385 386 8.600449 TGAACTTTTTCAAATGTGTGAACTTT 57.400 26.923 0.00 0.00 38.87 2.66
386 387 9.050601 TGAACTTTTTCAAATGTGTGAACTTTT 57.949 25.926 0.00 0.00 38.87 2.27
387 388 9.877137 GAACTTTTTCAAATGTGTGAACTTTTT 57.123 25.926 0.00 0.00 37.24 1.94
477 478 8.572855 TTTCATTGAACTTTTTCCAAATTGGT 57.427 26.923 12.28 0.00 39.03 3.67
478 479 7.551035 TCATTGAACTTTTTCCAAATTGGTG 57.449 32.000 12.28 0.00 39.03 4.17
479 480 7.334090 TCATTGAACTTTTTCCAAATTGGTGA 58.666 30.769 12.28 0.87 39.03 4.02
480 481 7.826252 TCATTGAACTTTTTCCAAATTGGTGAA 59.174 29.630 12.28 5.77 39.03 3.18
481 482 8.623030 CATTGAACTTTTTCCAAATTGGTGAAT 58.377 29.630 12.28 0.00 39.03 2.57
482 483 8.572855 TTGAACTTTTTCCAAATTGGTGAATT 57.427 26.923 12.28 0.84 39.03 2.17
483 484 7.983307 TGAACTTTTTCCAAATTGGTGAATTG 58.017 30.769 12.28 6.90 39.03 2.32
484 485 7.609532 TGAACTTTTTCCAAATTGGTGAATTGT 59.390 29.630 12.28 7.42 39.03 2.71
485 486 7.936496 ACTTTTTCCAAATTGGTGAATTGTT 57.064 28.000 12.28 0.00 39.03 2.83
486 487 8.347004 ACTTTTTCCAAATTGGTGAATTGTTT 57.653 26.923 12.28 0.00 39.03 2.83
487 488 8.801299 ACTTTTTCCAAATTGGTGAATTGTTTT 58.199 25.926 12.28 0.00 39.03 2.43
488 489 9.636879 CTTTTTCCAAATTGGTGAATTGTTTTT 57.363 25.926 12.28 0.00 39.03 1.94
491 492 8.792830 TTCCAAATTGGTGAATTGTTTTTACA 57.207 26.923 12.28 0.00 39.03 2.41
492 493 8.792830 TCCAAATTGGTGAATTGTTTTTACAA 57.207 26.923 12.28 0.00 39.03 2.41
493 494 9.231297 TCCAAATTGGTGAATTGTTTTTACAAA 57.769 25.926 12.28 0.00 39.03 2.83
515 516 9.651913 ACAAATTTAATGAACACTTCACAAACT 57.348 25.926 0.00 0.00 43.48 2.66
518 519 9.868277 AATTTAATGAACACTTCACAAACTTGA 57.132 25.926 0.00 0.00 43.48 3.02
524 525 8.322906 TGAACACTTCACAAACTTGATATAGG 57.677 34.615 0.00 0.00 34.08 2.57
525 526 7.936847 TGAACACTTCACAAACTTGATATAGGT 59.063 33.333 0.00 0.00 34.08 3.08
526 527 7.672983 ACACTTCACAAACTTGATATAGGTG 57.327 36.000 0.00 0.00 0.00 4.00
527 528 6.149474 ACACTTCACAAACTTGATATAGGTGC 59.851 38.462 0.00 0.00 0.00 5.01
528 529 6.149308 CACTTCACAAACTTGATATAGGTGCA 59.851 38.462 0.00 0.00 0.00 4.57
529 530 6.372659 ACTTCACAAACTTGATATAGGTGCAG 59.627 38.462 0.00 0.00 0.00 4.41
530 531 5.804639 TCACAAACTTGATATAGGTGCAGT 58.195 37.500 0.00 0.00 0.00 4.40
531 532 5.643348 TCACAAACTTGATATAGGTGCAGTG 59.357 40.000 0.00 0.00 0.00 3.66
532 533 4.943705 ACAAACTTGATATAGGTGCAGTGG 59.056 41.667 0.00 0.00 0.00 4.00
533 534 5.185454 CAAACTTGATATAGGTGCAGTGGA 58.815 41.667 0.00 0.00 0.00 4.02
534 535 5.636903 AACTTGATATAGGTGCAGTGGAT 57.363 39.130 0.00 0.00 0.00 3.41
535 536 5.220710 ACTTGATATAGGTGCAGTGGATC 57.779 43.478 0.00 0.00 0.00 3.36
536 537 4.655649 ACTTGATATAGGTGCAGTGGATCA 59.344 41.667 0.00 0.00 0.00 2.92
541 542 2.300967 GGTGCAGTGGATCAGGGGA 61.301 63.158 0.00 0.00 0.00 4.81
546 547 0.108207 CAGTGGATCAGGGGATGCTC 59.892 60.000 0.00 0.00 41.94 4.26
568 569 3.554692 CGGATCTGGCACGTTCGC 61.555 66.667 0.00 0.00 0.00 4.70
606 607 1.807142 GGCAGCAAACCTACTGTCTTC 59.193 52.381 0.00 0.00 35.62 2.87
726 1145 2.709934 AGAGCATCCATAGGCAGAATGT 59.290 45.455 0.00 0.00 34.22 2.71
727 1146 3.906218 AGAGCATCCATAGGCAGAATGTA 59.094 43.478 0.00 0.00 34.22 2.29
729 1148 5.013913 AGAGCATCCATAGGCAGAATGTAAT 59.986 40.000 0.00 0.00 34.22 1.89
730 1149 5.251764 AGCATCCATAGGCAGAATGTAATC 58.748 41.667 0.00 0.00 39.31 1.75
731 1150 4.397417 GCATCCATAGGCAGAATGTAATCC 59.603 45.833 0.00 0.00 39.31 3.01
749 1175 0.108520 CCCTTGTGCATGCATTCCAC 60.109 55.000 25.64 11.15 0.00 4.02
760 1186 4.023365 GCATGCATTCCACTTCCTCTATTC 60.023 45.833 14.21 0.00 0.00 1.75
771 1201 7.177216 TCCACTTCCTCTATTCGTAAGTAAACA 59.823 37.037 0.00 0.00 39.48 2.83
775 1205 7.330900 TCCTCTATTCGTAAGTAAACAGGAG 57.669 40.000 0.00 0.00 39.48 3.69
876 1306 1.627864 AATCCCCTTCACCCAAAACG 58.372 50.000 0.00 0.00 0.00 3.60
877 1307 0.898326 ATCCCCTTCACCCAAAACGC 60.898 55.000 0.00 0.00 0.00 4.84
885 1315 1.135257 TCACCCAAAACGCACACAAAG 60.135 47.619 0.00 0.00 0.00 2.77
921 1359 4.828925 GCCACCTGCTCCGCTCTC 62.829 72.222 0.00 0.00 36.87 3.20
937 1376 4.202161 CCGCTCTCCCATGTATATACATCC 60.202 50.000 22.81 7.14 44.57 3.51
943 1382 3.706594 CCCATGTATATACATCCCGCTCT 59.293 47.826 22.81 0.82 44.57 4.09
1386 1845 0.741326 ACATCGAGATCACCGAGGTG 59.259 55.000 21.08 15.74 46.92 4.00
1409 1868 5.104610 TGGGACAGGTGTAGTAGACTAGTAG 60.105 48.000 0.00 0.00 0.00 2.57
1411 1870 6.098982 GGGACAGGTGTAGTAGACTAGTAGTA 59.901 46.154 1.88 0.00 0.00 1.82
1412 1871 6.983890 GGACAGGTGTAGTAGACTAGTAGTAC 59.016 46.154 1.88 0.79 31.76 2.73
1413 1872 7.147742 GGACAGGTGTAGTAGACTAGTAGTACT 60.148 44.444 17.40 17.40 32.20 2.73
1414 1873 8.830915 ACAGGTGTAGTAGACTAGTAGTACTA 57.169 38.462 15.87 15.87 32.20 1.82
1429 1888 7.945033 AGTAGTACTAGTAATGACGCTAGAC 57.055 40.000 12.98 0.83 38.36 2.59
1445 1911 3.002862 GCTAGACCACTCGAGATGTACTG 59.997 52.174 21.68 5.38 0.00 2.74
1509 1977 4.514401 ACAAGTCTTTCTGAACTTTCCGT 58.486 39.130 0.00 0.00 0.00 4.69
1525 1993 5.475909 ACTTTCCGTCAACTGTCTCTGTATA 59.524 40.000 0.00 0.00 0.00 1.47
1528 1996 6.615264 TCCGTCAACTGTCTCTGTATATAC 57.385 41.667 5.89 5.89 0.00 1.47
1621 2101 2.853731 CTCGGTCGAGCTAATCAAGT 57.146 50.000 13.48 0.00 35.31 3.16
1675 2764 4.604843 TTTCTGATTATGCTGCTTCACG 57.395 40.909 0.00 0.00 0.00 4.35
1734 3221 4.125703 ACTAGTAATGAATCAGCAGCTGC 58.874 43.478 31.53 31.53 42.49 5.25
1757 3245 6.017523 TGCAAATTACAAATCTTGACTCGTGA 60.018 34.615 0.00 0.00 0.00 4.35
1764 3252 7.672983 ACAAATCTTGACTCGTGATTTACAT 57.327 32.000 0.00 0.00 38.05 2.29
1800 3288 4.948608 TTTTCGCGCATAAAACATAGGA 57.051 36.364 8.75 0.00 0.00 2.94
1801 3289 4.530094 TTTCGCGCATAAAACATAGGAG 57.470 40.909 8.75 0.00 0.00 3.69
1802 3290 3.173668 TCGCGCATAAAACATAGGAGT 57.826 42.857 8.75 0.00 0.00 3.85
1803 3291 4.310357 TCGCGCATAAAACATAGGAGTA 57.690 40.909 8.75 0.00 0.00 2.59
1804 3292 4.295870 TCGCGCATAAAACATAGGAGTAG 58.704 43.478 8.75 0.00 0.00 2.57
1811 3299 6.074463 GCATAAAACATAGGAGTAGTACGCAC 60.074 42.308 6.37 0.00 0.00 5.34
1846 3335 8.702408 TTTTTACTCGACAACAAAATGATACG 57.298 30.769 0.00 0.00 0.00 3.06
2064 3557 5.692115 TTCTATGTAAGCATGGTTCAGGA 57.308 39.130 14.50 10.94 36.58 3.86
2195 3694 6.639671 TTTAAAAACATGTGCACACAACTC 57.360 33.333 24.37 0.00 45.41 3.01
2197 3696 5.574891 AAAAACATGTGCACACAACTCTA 57.425 34.783 24.37 0.00 45.41 2.43
2227 3726 9.403583 TGAAATTATGTATTTTGTACTCCCTCC 57.596 33.333 0.00 0.00 36.59 4.30
2228 3727 9.403583 GAAATTATGTATTTTGTACTCCCTCCA 57.596 33.333 0.00 0.00 36.59 3.86
2229 3728 9.936329 AAATTATGTATTTTGTACTCCCTCCAT 57.064 29.630 0.00 0.00 32.48 3.41
2230 3729 9.574516 AATTATGTATTTTGTACTCCCTCCATC 57.425 33.333 0.00 0.00 0.00 3.51
2231 3730 5.367945 TGTATTTTGTACTCCCTCCATCC 57.632 43.478 0.00 0.00 0.00 3.51
2232 3731 3.953542 ATTTTGTACTCCCTCCATCCC 57.046 47.619 0.00 0.00 0.00 3.85
2233 3732 2.352561 TTTGTACTCCCTCCATCCCA 57.647 50.000 0.00 0.00 0.00 4.37
2234 3733 2.352561 TTGTACTCCCTCCATCCCAA 57.647 50.000 0.00 0.00 0.00 4.12
2235 3734 2.352561 TGTACTCCCTCCATCCCAAA 57.647 50.000 0.00 0.00 0.00 3.28
2236 3735 2.638325 TGTACTCCCTCCATCCCAAAA 58.362 47.619 0.00 0.00 0.00 2.44
2237 3736 3.197983 TGTACTCCCTCCATCCCAAAAT 58.802 45.455 0.00 0.00 0.00 1.82
2238 3737 4.376223 TGTACTCCCTCCATCCCAAAATA 58.624 43.478 0.00 0.00 0.00 1.40
2239 3738 4.791334 TGTACTCCCTCCATCCCAAAATAA 59.209 41.667 0.00 0.00 0.00 1.40
2240 3739 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
2241 3740 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
2242 3741 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
2243 3742 3.596046 TCCCTCCATCCCAAAATAAGTGT 59.404 43.478 0.00 0.00 0.00 3.55
2244 3743 3.954258 CCCTCCATCCCAAAATAAGTGTC 59.046 47.826 0.00 0.00 0.00 3.67
2245 3744 4.325344 CCCTCCATCCCAAAATAAGTGTCT 60.325 45.833 0.00 0.00 0.00 3.41
2246 3745 4.884164 CCTCCATCCCAAAATAAGTGTCTC 59.116 45.833 0.00 0.00 0.00 3.36
2247 3746 5.500234 CTCCATCCCAAAATAAGTGTCTCA 58.500 41.667 0.00 0.00 0.00 3.27
2248 3747 5.886609 TCCATCCCAAAATAAGTGTCTCAA 58.113 37.500 0.00 0.00 0.00 3.02
2249 3748 5.710099 TCCATCCCAAAATAAGTGTCTCAAC 59.290 40.000 0.00 0.00 0.00 3.18
2250 3749 5.711976 CCATCCCAAAATAAGTGTCTCAACT 59.288 40.000 0.00 0.00 0.00 3.16
2251 3750 6.209391 CCATCCCAAAATAAGTGTCTCAACTT 59.791 38.462 0.00 0.00 42.89 2.66
2252 3751 7.255942 CCATCCCAAAATAAGTGTCTCAACTTT 60.256 37.037 0.00 0.00 40.77 2.66
2253 3752 7.038154 TCCCAAAATAAGTGTCTCAACTTTG 57.962 36.000 0.00 0.00 40.77 2.77
2254 3753 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2255 3754 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2256 3755 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2257 3756 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2260 3759 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
2261 3760 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
2262 3761 6.163135 AGTGTCTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
2263 3762 6.583562 AGTGTCTCAACTTTGTACTAGCTTT 58.416 36.000 0.00 0.00 0.00 3.51
2264 3763 7.723324 AGTGTCTCAACTTTGTACTAGCTTTA 58.277 34.615 0.00 0.00 0.00 1.85
2265 3764 7.868415 AGTGTCTCAACTTTGTACTAGCTTTAG 59.132 37.037 0.00 0.00 0.00 1.85
2266 3765 7.652507 GTGTCTCAACTTTGTACTAGCTTTAGT 59.347 37.037 0.00 0.00 0.00 2.24
2267 3766 8.853126 TGTCTCAACTTTGTACTAGCTTTAGTA 58.147 33.333 0.00 0.00 0.00 1.82
2302 3801 8.166422 ACTAAGTTTGAGACACTTATTTTGGG 57.834 34.615 0.00 0.00 36.39 4.12
2303 3802 7.996644 ACTAAGTTTGAGACACTTATTTTGGGA 59.003 33.333 0.00 0.00 36.39 4.37
2304 3803 7.654022 AAGTTTGAGACACTTATTTTGGGAA 57.346 32.000 0.00 0.00 32.48 3.97
2305 3804 7.654022 AGTTTGAGACACTTATTTTGGGAAA 57.346 32.000 0.00 0.00 0.00 3.13
2306 3805 7.716612 AGTTTGAGACACTTATTTTGGGAAAG 58.283 34.615 0.00 0.00 0.00 2.62
2307 3806 7.559897 AGTTTGAGACACTTATTTTGGGAAAGA 59.440 33.333 0.00 0.00 0.00 2.52
2308 3807 7.510549 TTGAGACACTTATTTTGGGAAAGAG 57.489 36.000 0.00 0.00 0.00 2.85
2309 3808 6.003950 TGAGACACTTATTTTGGGAAAGAGG 58.996 40.000 0.00 0.00 0.00 3.69
2310 3809 5.325239 AGACACTTATTTTGGGAAAGAGGG 58.675 41.667 0.00 0.00 0.00 4.30
2311 3810 5.074515 AGACACTTATTTTGGGAAAGAGGGA 59.925 40.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.024556 CAGTCAAGGTTAATCATCATCGCC 60.025 45.833 0.00 0.00 0.00 5.54
1 2 4.811024 TCAGTCAAGGTTAATCATCATCGC 59.189 41.667 0.00 0.00 0.00 4.58
2 3 6.908870 TTCAGTCAAGGTTAATCATCATCG 57.091 37.500 0.00 0.00 0.00 3.84
5 6 9.739276 ACTTATTTCAGTCAAGGTTAATCATCA 57.261 29.630 0.00 0.00 0.00 3.07
6 7 9.994432 CACTTATTTCAGTCAAGGTTAATCATC 57.006 33.333 0.00 0.00 0.00 2.92
7 8 9.520515 ACACTTATTTCAGTCAAGGTTAATCAT 57.479 29.630 0.00 0.00 0.00 2.45
8 9 8.783093 CACACTTATTTCAGTCAAGGTTAATCA 58.217 33.333 0.00 0.00 0.00 2.57
9 10 7.750903 GCACACTTATTTCAGTCAAGGTTAATC 59.249 37.037 0.00 0.00 0.00 1.75
10 11 7.309194 GGCACACTTATTTCAGTCAAGGTTAAT 60.309 37.037 0.00 0.00 0.00 1.40
11 12 6.016610 GGCACACTTATTTCAGTCAAGGTTAA 60.017 38.462 0.00 0.00 0.00 2.01
12 13 5.472137 GGCACACTTATTTCAGTCAAGGTTA 59.528 40.000 0.00 0.00 0.00 2.85
13 14 4.278419 GGCACACTTATTTCAGTCAAGGTT 59.722 41.667 0.00 0.00 0.00 3.50
14 15 3.821033 GGCACACTTATTTCAGTCAAGGT 59.179 43.478 0.00 0.00 0.00 3.50
15 16 4.074970 AGGCACACTTATTTCAGTCAAGG 58.925 43.478 0.00 0.00 0.00 3.61
16 17 5.695851 AAGGCACACTTATTTCAGTCAAG 57.304 39.130 0.00 0.00 37.74 3.02
17 18 5.592282 TCAAAGGCACACTTATTTCAGTCAA 59.408 36.000 0.00 0.00 38.85 3.18
18 19 5.129634 TCAAAGGCACACTTATTTCAGTCA 58.870 37.500 0.00 0.00 38.85 3.41
19 20 5.689383 TCAAAGGCACACTTATTTCAGTC 57.311 39.130 0.00 0.00 38.85 3.51
20 21 4.022849 GCTCAAAGGCACACTTATTTCAGT 60.023 41.667 0.00 0.00 38.85 3.41
21 22 4.022935 TGCTCAAAGGCACACTTATTTCAG 60.023 41.667 0.00 0.00 38.85 3.02
22 23 3.888323 TGCTCAAAGGCACACTTATTTCA 59.112 39.130 0.00 0.00 38.85 2.69
23 24 4.503741 TGCTCAAAGGCACACTTATTTC 57.496 40.909 0.00 0.00 38.85 2.17
24 25 4.935352 TTGCTCAAAGGCACACTTATTT 57.065 36.364 0.00 0.00 42.27 1.40
25 26 4.379813 CGATTGCTCAAAGGCACACTTATT 60.380 41.667 0.00 0.00 42.27 1.40
26 27 3.127548 CGATTGCTCAAAGGCACACTTAT 59.872 43.478 0.00 0.00 42.27 1.73
27 28 2.483877 CGATTGCTCAAAGGCACACTTA 59.516 45.455 0.00 0.00 42.27 2.24
28 29 1.267806 CGATTGCTCAAAGGCACACTT 59.732 47.619 0.00 0.00 42.27 3.16
29 30 0.877071 CGATTGCTCAAAGGCACACT 59.123 50.000 0.00 0.00 42.27 3.55
30 31 0.874390 TCGATTGCTCAAAGGCACAC 59.126 50.000 0.00 0.00 42.27 3.82
31 32 1.159285 CTCGATTGCTCAAAGGCACA 58.841 50.000 0.00 0.00 42.27 4.57
32 33 1.129437 GACTCGATTGCTCAAAGGCAC 59.871 52.381 0.00 0.00 42.27 5.01
33 34 1.270785 TGACTCGATTGCTCAAAGGCA 60.271 47.619 0.00 0.00 40.74 4.75
34 35 1.129437 GTGACTCGATTGCTCAAAGGC 59.871 52.381 0.00 0.00 0.00 4.35
35 36 1.734465 GGTGACTCGATTGCTCAAAGG 59.266 52.381 0.00 0.00 0.00 3.11
36 37 2.693069 AGGTGACTCGATTGCTCAAAG 58.307 47.619 0.00 0.00 32.90 2.77
37 38 2.839486 AGGTGACTCGATTGCTCAAA 57.161 45.000 0.00 0.00 32.90 2.69
38 39 3.430790 CCATAGGTGACTCGATTGCTCAA 60.431 47.826 0.00 0.00 43.67 3.02
39 40 2.101415 CCATAGGTGACTCGATTGCTCA 59.899 50.000 0.00 0.00 43.67 4.26
40 41 2.546795 CCCATAGGTGACTCGATTGCTC 60.547 54.545 0.00 0.00 43.67 4.26
41 42 1.414181 CCCATAGGTGACTCGATTGCT 59.586 52.381 0.00 0.00 43.67 3.91
42 43 1.541233 CCCCATAGGTGACTCGATTGC 60.541 57.143 0.00 0.00 43.67 3.56
43 44 1.070758 CCCCCATAGGTGACTCGATTG 59.929 57.143 0.00 0.00 43.67 2.67
44 45 1.344087 ACCCCCATAGGTGACTCGATT 60.344 52.381 0.00 0.00 43.67 3.34
45 46 0.264955 ACCCCCATAGGTGACTCGAT 59.735 55.000 0.00 0.00 43.67 3.59
46 47 0.928505 TACCCCCATAGGTGACTCGA 59.071 55.000 0.00 0.00 41.42 4.04
47 48 1.893801 GATACCCCCATAGGTGACTCG 59.106 57.143 0.00 0.00 41.42 4.18
48 49 2.972348 TGATACCCCCATAGGTGACTC 58.028 52.381 0.00 0.00 41.42 3.36
49 50 3.318313 CTTGATACCCCCATAGGTGACT 58.682 50.000 0.00 0.00 41.42 3.41
50 51 2.224548 GCTTGATACCCCCATAGGTGAC 60.225 54.545 0.00 0.00 41.42 3.67
51 52 2.054799 GCTTGATACCCCCATAGGTGA 58.945 52.381 0.00 0.00 41.42 4.02
52 53 2.057922 AGCTTGATACCCCCATAGGTG 58.942 52.381 0.00 0.00 41.42 4.00
53 54 2.057922 CAGCTTGATACCCCCATAGGT 58.942 52.381 0.00 0.00 44.37 3.08
54 55 1.352352 CCAGCTTGATACCCCCATAGG 59.648 57.143 0.00 0.00 0.00 2.57
55 56 2.338809 TCCAGCTTGATACCCCCATAG 58.661 52.381 0.00 0.00 0.00 2.23
56 57 2.505672 TCCAGCTTGATACCCCCATA 57.494 50.000 0.00 0.00 0.00 2.74
57 58 1.707427 GATCCAGCTTGATACCCCCAT 59.293 52.381 0.00 0.00 0.00 4.00
58 59 1.140312 GATCCAGCTTGATACCCCCA 58.860 55.000 0.00 0.00 0.00 4.96
59 60 0.402121 GGATCCAGCTTGATACCCCC 59.598 60.000 6.95 0.00 0.00 5.40
60 61 1.349357 GAGGATCCAGCTTGATACCCC 59.651 57.143 15.82 1.56 0.00 4.95
61 62 2.849294 GAGGATCCAGCTTGATACCC 57.151 55.000 15.82 2.25 0.00 3.69
74 75 0.461961 CGGTGACAAGAGGGAGGATC 59.538 60.000 0.00 0.00 0.00 3.36
75 76 0.978146 CCGGTGACAAGAGGGAGGAT 60.978 60.000 0.00 0.00 0.00 3.24
76 77 1.609501 CCGGTGACAAGAGGGAGGA 60.610 63.158 0.00 0.00 0.00 3.71
77 78 2.982130 CCGGTGACAAGAGGGAGG 59.018 66.667 0.00 0.00 0.00 4.30
78 79 1.831652 AAGCCGGTGACAAGAGGGAG 61.832 60.000 1.90 0.00 0.00 4.30
79 80 1.827399 GAAGCCGGTGACAAGAGGGA 61.827 60.000 1.90 0.00 0.00 4.20
80 81 1.376037 GAAGCCGGTGACAAGAGGG 60.376 63.158 1.90 0.00 0.00 4.30
81 82 1.738099 CGAAGCCGGTGACAAGAGG 60.738 63.158 1.90 0.00 0.00 3.69
82 83 0.319555 TTCGAAGCCGGTGACAAGAG 60.320 55.000 1.90 0.00 36.24 2.85
83 84 0.320374 ATTCGAAGCCGGTGACAAGA 59.680 50.000 1.90 0.00 36.24 3.02
84 85 1.128692 GAATTCGAAGCCGGTGACAAG 59.871 52.381 1.90 0.00 36.24 3.16
85 86 1.153353 GAATTCGAAGCCGGTGACAA 58.847 50.000 1.90 0.00 36.24 3.18
86 87 1.011968 CGAATTCGAAGCCGGTGACA 61.012 55.000 23.29 0.00 43.02 3.58
87 88 1.708027 CGAATTCGAAGCCGGTGAC 59.292 57.895 23.29 0.00 43.02 3.67
88 89 2.098233 GCGAATTCGAAGCCGGTGA 61.098 57.895 31.01 0.00 43.02 4.02
89 90 1.906994 TTGCGAATTCGAAGCCGGTG 61.907 55.000 31.01 0.00 43.02 4.94
90 91 1.669760 TTGCGAATTCGAAGCCGGT 60.670 52.632 31.01 0.00 43.02 5.28
91 92 1.226018 GTTGCGAATTCGAAGCCGG 60.226 57.895 31.01 0.00 43.02 6.13
92 93 0.096976 ATGTTGCGAATTCGAAGCCG 59.903 50.000 31.01 15.01 43.02 5.52
93 94 1.398390 AGATGTTGCGAATTCGAAGCC 59.602 47.619 31.01 15.29 43.02 4.35
94 95 2.434761 CAGATGTTGCGAATTCGAAGC 58.565 47.619 31.01 23.04 43.02 3.86
95 96 2.434761 GCAGATGTTGCGAATTCGAAG 58.565 47.619 31.01 9.03 44.09 3.79
96 97 2.525750 GCAGATGTTGCGAATTCGAA 57.474 45.000 31.01 19.35 44.09 3.71
106 107 1.086696 CCCTTGGTACGCAGATGTTG 58.913 55.000 0.00 0.00 0.00 3.33
107 108 0.981183 TCCCTTGGTACGCAGATGTT 59.019 50.000 0.00 0.00 0.00 2.71
108 109 0.981183 TTCCCTTGGTACGCAGATGT 59.019 50.000 0.00 0.00 0.00 3.06
109 110 1.207089 TCTTCCCTTGGTACGCAGATG 59.793 52.381 0.00 0.00 0.00 2.90
110 111 1.568504 TCTTCCCTTGGTACGCAGAT 58.431 50.000 0.00 0.00 0.00 2.90
111 112 1.480954 GATCTTCCCTTGGTACGCAGA 59.519 52.381 0.00 0.00 0.00 4.26
112 113 1.207089 TGATCTTCCCTTGGTACGCAG 59.793 52.381 0.00 0.00 0.00 5.18
113 114 1.271856 TGATCTTCCCTTGGTACGCA 58.728 50.000 0.00 0.00 0.00 5.24
114 115 2.622064 ATGATCTTCCCTTGGTACGC 57.378 50.000 0.00 0.00 0.00 4.42
115 116 6.202954 GTGATTAATGATCTTCCCTTGGTACG 59.797 42.308 0.00 0.00 35.69 3.67
116 117 7.283329 AGTGATTAATGATCTTCCCTTGGTAC 58.717 38.462 0.00 0.00 35.69 3.34
117 118 7.451731 AGTGATTAATGATCTTCCCTTGGTA 57.548 36.000 0.00 0.00 35.69 3.25
118 119 6.332976 AGTGATTAATGATCTTCCCTTGGT 57.667 37.500 0.00 0.00 35.69 3.67
119 120 6.939163 CCTAGTGATTAATGATCTTCCCTTGG 59.061 42.308 0.00 0.00 35.69 3.61
120 121 7.512992 ACCTAGTGATTAATGATCTTCCCTTG 58.487 38.462 0.00 0.00 35.69 3.61
121 122 7.698163 ACCTAGTGATTAATGATCTTCCCTT 57.302 36.000 0.00 0.00 35.69 3.95
122 123 7.698163 AACCTAGTGATTAATGATCTTCCCT 57.302 36.000 0.00 0.00 35.69 4.20
123 124 9.660180 GATAACCTAGTGATTAATGATCTTCCC 57.340 37.037 0.00 0.00 35.69 3.97
124 125 9.660180 GGATAACCTAGTGATTAATGATCTTCC 57.340 37.037 0.00 0.00 35.69 3.46
125 126 9.660180 GGGATAACCTAGTGATTAATGATCTTC 57.340 37.037 0.00 0.00 34.28 2.87
126 127 9.170890 TGGGATAACCTAGTGATTAATGATCTT 57.829 33.333 0.00 0.00 41.11 2.40
127 128 8.742125 TGGGATAACCTAGTGATTAATGATCT 57.258 34.615 0.00 0.00 41.11 2.75
128 129 9.965902 ATTGGGATAACCTAGTGATTAATGATC 57.034 33.333 0.00 0.00 41.11 2.92
134 135 9.220906 ACAACTATTGGGATAACCTAGTGATTA 57.779 33.333 0.00 0.00 41.11 1.75
135 136 7.993183 CACAACTATTGGGATAACCTAGTGATT 59.007 37.037 0.00 0.00 41.11 2.57
136 137 7.347222 TCACAACTATTGGGATAACCTAGTGAT 59.653 37.037 0.00 0.00 38.38 3.06
137 138 6.670464 TCACAACTATTGGGATAACCTAGTGA 59.330 38.462 0.00 0.00 38.38 3.41
138 139 6.884832 TCACAACTATTGGGATAACCTAGTG 58.115 40.000 0.00 0.00 38.38 2.74
139 140 7.504926 TTCACAACTATTGGGATAACCTAGT 57.495 36.000 0.00 0.00 43.76 2.57
140 141 7.827236 TGTTTCACAACTATTGGGATAACCTAG 59.173 37.037 12.28 0.00 43.76 3.02
141 142 7.608761 GTGTTTCACAACTATTGGGATAACCTA 59.391 37.037 12.28 0.00 43.76 3.08
142 143 6.433093 GTGTTTCACAACTATTGGGATAACCT 59.567 38.462 12.28 0.00 43.76 3.50
143 144 6.433093 AGTGTTTCACAACTATTGGGATAACC 59.567 38.462 12.28 0.00 43.76 2.85
144 145 7.448748 AGTGTTTCACAACTATTGGGATAAC 57.551 36.000 0.00 3.84 43.76 1.89
145 146 7.504238 ACAAGTGTTTCACAACTATTGGGATAA 59.496 33.333 0.00 0.00 43.76 1.75
146 147 7.001674 ACAAGTGTTTCACAACTATTGGGATA 58.998 34.615 0.00 0.00 43.76 2.59
147 148 5.833131 ACAAGTGTTTCACAACTATTGGGAT 59.167 36.000 0.00 0.00 43.76 3.85
148 149 5.067153 CACAAGTGTTTCACAACTATTGGGA 59.933 40.000 2.80 0.00 42.37 4.37
149 150 5.163561 ACACAAGTGTTTCACAACTATTGGG 60.164 40.000 0.00 2.05 41.83 4.12
150 151 5.890334 ACACAAGTGTTTCACAACTATTGG 58.110 37.500 0.00 0.00 41.83 3.16
206 207 8.934507 AATGAATGAGTAAAAACGTCCAAAAA 57.065 26.923 0.00 0.00 0.00 1.94
207 208 8.191446 TGAATGAATGAGTAAAAACGTCCAAAA 58.809 29.630 0.00 0.00 0.00 2.44
208 209 7.708051 TGAATGAATGAGTAAAAACGTCCAAA 58.292 30.769 0.00 0.00 0.00 3.28
209 210 7.265647 TGAATGAATGAGTAAAAACGTCCAA 57.734 32.000 0.00 0.00 0.00 3.53
210 211 6.869315 TGAATGAATGAGTAAAAACGTCCA 57.131 33.333 0.00 0.00 0.00 4.02
211 212 8.742554 AAATGAATGAATGAGTAAAAACGTCC 57.257 30.769 0.00 0.00 0.00 4.79
261 262 9.947433 AGAATCCATGCATTTAAGAAAAATGAA 57.053 25.926 13.22 4.39 39.36 2.57
262 263 9.947433 AAGAATCCATGCATTTAAGAAAAATGA 57.053 25.926 13.22 1.39 39.36 2.57
276 277 8.871862 CGATTGAATTTTAAAAGAATCCATGCA 58.128 29.630 16.71 0.00 0.00 3.96
277 278 9.086336 TCGATTGAATTTTAAAAGAATCCATGC 57.914 29.630 16.71 0.00 0.00 4.06
292 293 8.720562 GGGAAAAATGTTTCATCGATTGAATTT 58.279 29.630 10.53 1.30 43.73 1.82
293 294 7.877097 TGGGAAAAATGTTTCATCGATTGAATT 59.123 29.630 10.53 0.00 43.73 2.17
294 295 7.385267 TGGGAAAAATGTTTCATCGATTGAAT 58.615 30.769 10.53 0.00 43.73 2.57
295 296 6.753180 TGGGAAAAATGTTTCATCGATTGAA 58.247 32.000 10.53 0.45 44.29 2.69
296 297 6.338214 TGGGAAAAATGTTTCATCGATTGA 57.662 33.333 10.53 0.00 44.29 2.57
297 298 7.418840 TTTGGGAAAAATGTTTCATCGATTG 57.581 32.000 10.53 0.00 44.29 2.67
298 299 8.620116 ATTTTGGGAAAAATGTTTCATCGATT 57.380 26.923 10.53 0.00 44.29 3.34
299 300 8.620116 AATTTTGGGAAAAATGTTTCATCGAT 57.380 26.923 10.53 0.00 44.29 3.59
300 301 7.712639 TGAATTTTGGGAAAAATGTTTCATCGA 59.287 29.630 10.53 0.00 44.29 3.59
301 302 7.859598 TGAATTTTGGGAAAAATGTTTCATCG 58.140 30.769 10.53 0.00 44.29 3.84
306 307 9.814899 GGAAAATGAATTTTGGGAAAAATGTTT 57.185 25.926 5.76 0.00 39.86 2.83
307 308 8.975295 TGGAAAATGAATTTTGGGAAAAATGTT 58.025 25.926 5.76 0.00 39.86 2.71
308 309 8.530804 TGGAAAATGAATTTTGGGAAAAATGT 57.469 26.923 5.76 0.00 39.86 2.71
309 310 9.813446 TTTGGAAAATGAATTTTGGGAAAAATG 57.187 25.926 5.76 0.00 39.86 2.32
313 314 9.193806 TGAATTTGGAAAATGAATTTTGGGAAA 57.806 25.926 5.76 3.24 39.86 3.13
314 315 8.757982 TGAATTTGGAAAATGAATTTTGGGAA 57.242 26.923 5.76 0.00 39.86 3.97
315 316 8.794553 CATGAATTTGGAAAATGAATTTTGGGA 58.205 29.630 5.76 0.00 39.86 4.37
316 317 8.794553 TCATGAATTTGGAAAATGAATTTTGGG 58.205 29.630 5.76 0.00 39.86 4.12
352 353 9.903682 ACACATTTGAAAAAGTTCATCTATCTG 57.096 29.630 0.00 0.00 43.29 2.90
353 354 9.903682 CACACATTTGAAAAAGTTCATCTATCT 57.096 29.630 0.00 0.00 43.29 1.98
354 355 9.897744 TCACACATTTGAAAAAGTTCATCTATC 57.102 29.630 0.00 0.00 43.29 2.08
356 357 9.515020 GTTCACACATTTGAAAAAGTTCATCTA 57.485 29.630 0.00 0.00 43.29 1.98
357 358 8.253113 AGTTCACACATTTGAAAAAGTTCATCT 58.747 29.630 0.00 0.00 43.29 2.90
358 359 8.411318 AGTTCACACATTTGAAAAAGTTCATC 57.589 30.769 0.00 0.00 43.29 2.92
359 360 8.776376 AAGTTCACACATTTGAAAAAGTTCAT 57.224 26.923 0.00 0.00 43.29 2.57
360 361 8.600449 AAAGTTCACACATTTGAAAAAGTTCA 57.400 26.923 0.00 0.00 42.12 3.18
361 362 9.877137 AAAAAGTTCACACATTTGAAAAAGTTC 57.123 25.926 0.00 0.00 37.24 3.01
451 452 9.018582 ACCAATTTGGAAAAAGTTCAATGAAAA 57.981 25.926 22.19 0.00 40.96 2.29
452 453 8.457261 CACCAATTTGGAAAAAGTTCAATGAAA 58.543 29.630 22.19 0.00 40.96 2.69
453 454 7.826252 TCACCAATTTGGAAAAAGTTCAATGAA 59.174 29.630 22.19 0.00 40.96 2.57
454 455 7.334090 TCACCAATTTGGAAAAAGTTCAATGA 58.666 30.769 22.19 7.53 40.96 2.57
455 456 7.551035 TCACCAATTTGGAAAAAGTTCAATG 57.449 32.000 22.19 5.32 40.96 2.82
456 457 8.750515 ATTCACCAATTTGGAAAAAGTTCAAT 57.249 26.923 22.19 0.00 40.96 2.57
457 458 8.457261 CAATTCACCAATTTGGAAAAAGTTCAA 58.543 29.630 22.19 0.00 40.96 2.69
458 459 7.609532 ACAATTCACCAATTTGGAAAAAGTTCA 59.390 29.630 22.19 0.00 40.96 3.18
459 460 7.984391 ACAATTCACCAATTTGGAAAAAGTTC 58.016 30.769 22.19 0.00 40.96 3.01
460 461 7.936496 ACAATTCACCAATTTGGAAAAAGTT 57.064 28.000 22.19 6.17 40.96 2.66
461 462 7.936496 AACAATTCACCAATTTGGAAAAAGT 57.064 28.000 22.19 13.55 40.96 2.66
462 463 9.636879 AAAAACAATTCACCAATTTGGAAAAAG 57.363 25.926 22.19 13.04 40.96 2.27
465 466 9.231297 TGTAAAAACAATTCACCAATTTGGAAA 57.769 25.926 22.19 14.80 40.96 3.13
466 467 8.792830 TGTAAAAACAATTCACCAATTTGGAA 57.207 26.923 22.19 7.21 40.96 3.53
467 468 8.792830 TTGTAAAAACAATTCACCAATTTGGA 57.207 26.923 22.19 0.00 40.96 3.53
489 490 9.651913 AGTTTGTGAAGTGTTCATTAAATTTGT 57.348 25.926 0.00 0.00 42.47 2.83
492 493 9.868277 TCAAGTTTGTGAAGTGTTCATTAAATT 57.132 25.926 0.00 0.00 42.47 1.82
498 499 8.950210 CCTATATCAAGTTTGTGAAGTGTTCAT 58.050 33.333 0.00 0.00 42.47 2.57
499 500 7.936847 ACCTATATCAAGTTTGTGAAGTGTTCA 59.063 33.333 0.00 0.00 37.33 3.18
500 501 8.230486 CACCTATATCAAGTTTGTGAAGTGTTC 58.770 37.037 0.00 0.00 0.00 3.18
501 502 7.308589 GCACCTATATCAAGTTTGTGAAGTGTT 60.309 37.037 0.00 0.00 0.00 3.32
502 503 6.149474 GCACCTATATCAAGTTTGTGAAGTGT 59.851 38.462 0.00 0.00 0.00 3.55
503 504 6.149308 TGCACCTATATCAAGTTTGTGAAGTG 59.851 38.462 0.00 0.00 0.00 3.16
504 505 6.237901 TGCACCTATATCAAGTTTGTGAAGT 58.762 36.000 0.00 0.00 0.00 3.01
505 506 6.372659 ACTGCACCTATATCAAGTTTGTGAAG 59.627 38.462 0.00 0.00 34.70 3.02
506 507 6.149308 CACTGCACCTATATCAAGTTTGTGAA 59.851 38.462 0.00 0.00 0.00 3.18
507 508 5.643348 CACTGCACCTATATCAAGTTTGTGA 59.357 40.000 0.00 0.00 0.00 3.58
508 509 5.163723 CCACTGCACCTATATCAAGTTTGTG 60.164 44.000 0.00 0.00 0.00 3.33
509 510 4.943705 CCACTGCACCTATATCAAGTTTGT 59.056 41.667 0.00 0.00 0.00 2.83
510 511 5.185454 TCCACTGCACCTATATCAAGTTTG 58.815 41.667 0.00 0.00 0.00 2.93
511 512 5.435686 TCCACTGCACCTATATCAAGTTT 57.564 39.130 0.00 0.00 0.00 2.66
512 513 5.130975 TGATCCACTGCACCTATATCAAGTT 59.869 40.000 0.00 0.00 0.00 2.66
513 514 4.655649 TGATCCACTGCACCTATATCAAGT 59.344 41.667 0.00 0.00 0.00 3.16
514 515 5.219343 TGATCCACTGCACCTATATCAAG 57.781 43.478 0.00 0.00 0.00 3.02
515 516 4.040829 CCTGATCCACTGCACCTATATCAA 59.959 45.833 0.00 0.00 0.00 2.57
516 517 3.580022 CCTGATCCACTGCACCTATATCA 59.420 47.826 0.00 0.00 0.00 2.15
517 518 3.055530 CCCTGATCCACTGCACCTATATC 60.056 52.174 0.00 0.00 0.00 1.63
518 519 2.909006 CCCTGATCCACTGCACCTATAT 59.091 50.000 0.00 0.00 0.00 0.86
519 520 2.329267 CCCTGATCCACTGCACCTATA 58.671 52.381 0.00 0.00 0.00 1.31
520 521 1.135094 CCCTGATCCACTGCACCTAT 58.865 55.000 0.00 0.00 0.00 2.57
521 522 0.982852 CCCCTGATCCACTGCACCTA 60.983 60.000 0.00 0.00 0.00 3.08
522 523 2.304056 CCCCTGATCCACTGCACCT 61.304 63.158 0.00 0.00 0.00 4.00
523 524 1.639635 ATCCCCTGATCCACTGCACC 61.640 60.000 0.00 0.00 0.00 5.01
524 525 0.465097 CATCCCCTGATCCACTGCAC 60.465 60.000 0.00 0.00 0.00 4.57
525 526 1.917495 CATCCCCTGATCCACTGCA 59.083 57.895 0.00 0.00 0.00 4.41
526 527 1.527844 GCATCCCCTGATCCACTGC 60.528 63.158 0.00 0.00 0.00 4.40
527 528 0.108207 GAGCATCCCCTGATCCACTG 59.892 60.000 0.00 0.00 34.08 3.66
528 529 1.406065 CGAGCATCCCCTGATCCACT 61.406 60.000 0.00 0.00 36.94 4.00
529 530 1.070445 CGAGCATCCCCTGATCCAC 59.930 63.158 0.00 0.00 36.94 4.02
530 531 2.142761 CCGAGCATCCCCTGATCCA 61.143 63.158 0.00 0.00 36.94 3.41
531 532 2.746359 CCGAGCATCCCCTGATCC 59.254 66.667 0.00 0.00 36.94 3.36
532 533 2.031768 GCCGAGCATCCCCTGATC 59.968 66.667 0.00 0.00 36.91 2.92
533 534 3.564218 GGCCGAGCATCCCCTGAT 61.564 66.667 0.00 0.00 0.00 2.90
541 542 3.933722 CAGATCCGGGCCGAGCAT 61.934 66.667 30.79 16.24 0.00 3.79
568 569 1.938625 CCAAACAAAACCAGCACAGG 58.061 50.000 0.00 0.00 0.00 4.00
569 570 1.289276 GCCAAACAAAACCAGCACAG 58.711 50.000 0.00 0.00 0.00 3.66
657 720 9.660180 CAGCTCTAACTTCTACCTCTAAAATTT 57.340 33.333 0.00 0.00 0.00 1.82
670 733 2.170187 CCATGAGGCAGCTCTAACTTCT 59.830 50.000 0.00 0.00 0.00 2.85
671 734 2.559440 CCATGAGGCAGCTCTAACTTC 58.441 52.381 0.00 0.00 0.00 3.01
673 736 0.835941 CCCATGAGGCAGCTCTAACT 59.164 55.000 0.00 0.00 0.00 2.24
726 1145 2.694628 GGAATGCATGCACAAGGGATTA 59.305 45.455 25.37 0.00 0.00 1.75
727 1146 1.483415 GGAATGCATGCACAAGGGATT 59.517 47.619 25.37 11.69 0.00 3.01
729 1148 0.251698 TGGAATGCATGCACAAGGGA 60.252 50.000 25.37 1.90 0.00 4.20
730 1149 2.278849 TGGAATGCATGCACAAGGG 58.721 52.632 25.37 0.00 0.00 3.95
749 1175 7.769220 TCCTGTTTACTTACGAATAGAGGAAG 58.231 38.462 0.00 0.00 0.00 3.46
760 1186 4.458295 TCTGGAGTCTCCTGTTTACTTACG 59.542 45.833 19.82 0.00 37.46 3.18
876 1306 0.675633 ATTGTCTGGGCTTTGTGTGC 59.324 50.000 0.00 0.00 0.00 4.57
877 1307 2.746269 CAATTGTCTGGGCTTTGTGTG 58.254 47.619 0.00 0.00 0.00 3.82
885 1315 1.509923 GCTCTGCAATTGTCTGGGC 59.490 57.895 7.40 10.86 0.00 5.36
921 1359 3.706594 AGAGCGGGATGTATATACATGGG 59.293 47.826 28.82 18.60 46.20 4.00
1386 1845 4.233632 ACTAGTCTACTACACCTGTCCC 57.766 50.000 0.00 0.00 0.00 4.46
1409 1868 5.526846 AGTGGTCTAGCGTCATTACTAGTAC 59.473 44.000 0.91 0.00 37.67 2.73
1411 1870 4.525024 AGTGGTCTAGCGTCATTACTAGT 58.475 43.478 0.00 0.00 37.67 2.57
1412 1871 4.318903 CGAGTGGTCTAGCGTCATTACTAG 60.319 50.000 0.00 0.00 37.76 2.57
1413 1872 3.558829 CGAGTGGTCTAGCGTCATTACTA 59.441 47.826 0.00 0.00 0.00 1.82
1414 1873 2.355132 CGAGTGGTCTAGCGTCATTACT 59.645 50.000 0.00 0.00 0.00 2.24
1415 1874 2.353889 TCGAGTGGTCTAGCGTCATTAC 59.646 50.000 0.00 0.00 0.00 1.89
1416 1875 2.612672 CTCGAGTGGTCTAGCGTCATTA 59.387 50.000 3.62 0.00 0.00 1.90
1417 1876 1.402259 CTCGAGTGGTCTAGCGTCATT 59.598 52.381 3.62 0.00 0.00 2.57
1429 1888 2.020720 AGAGCAGTACATCTCGAGTGG 58.979 52.381 13.13 8.38 34.66 4.00
1445 1911 5.009010 TGACAAATTTCTGAAACTGGAGAGC 59.991 40.000 4.73 0.00 0.00 4.09
1458 1924 1.680735 TGTTGCCGCTGACAAATTTCT 59.319 42.857 0.00 0.00 0.00 2.52
1525 1993 7.233389 ACTTCTTCAGTGTCACATACTGTAT 57.767 36.000 5.62 0.00 44.49 2.29
1528 1996 6.479990 TGAAACTTCTTCAGTGTCACATACTG 59.520 38.462 5.62 0.00 43.90 2.74
1530 1998 6.073548 CCTGAAACTTCTTCAGTGTCACATAC 60.074 42.308 5.62 0.00 43.90 2.39
1621 2101 2.233676 CGTACAGCCCCTCATATGCATA 59.766 50.000 9.27 9.27 0.00 3.14
1734 3221 8.955061 AATCACGAGTCAAGATTTGTAATTTG 57.045 30.769 0.00 0.00 0.00 2.32
2058 3551 7.695055 TCTTCAAGGTAATACCATTTCCTGAA 58.305 34.615 12.54 8.89 41.95 3.02
2064 3557 9.025041 CCTTTCTTCTTCAAGGTAATACCATTT 57.975 33.333 12.54 0.00 41.95 2.32
2127 3624 9.908152 GGTAATACCAATGCCACTAATTATTTC 57.092 33.333 4.24 0.00 38.42 2.17
2131 3628 7.156694 AGGGTAATACCAATGCCACTAATTA 57.843 36.000 12.03 0.00 41.02 1.40
2173 3670 5.960113 AGAGTTGTGTGCACATGTTTTTAA 58.040 33.333 24.69 7.18 41.52 1.52
2174 3671 5.574891 AGAGTTGTGTGCACATGTTTTTA 57.425 34.783 24.69 1.07 41.52 1.52
2183 3682 4.811555 TTCAATGTAGAGTTGTGTGCAC 57.188 40.909 10.75 10.75 0.00 4.57
2217 3716 3.953542 ATTTTGGGATGGAGGGAGTAC 57.046 47.619 0.00 0.00 0.00 2.73
2218 3717 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
2219 3718 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
2220 3719 4.210331 CACTTATTTTGGGATGGAGGGAG 58.790 47.826 0.00 0.00 0.00 4.30
2221 3720 3.596046 ACACTTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
2222 3721 3.954258 GACACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
2223 3722 4.860022 AGACACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
2224 3723 5.500234 TGAGACACTTATTTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
2225 3724 5.512942 TGAGACACTTATTTTGGGATGGA 57.487 39.130 0.00 0.00 0.00 3.41
2226 3725 5.711976 AGTTGAGACACTTATTTTGGGATGG 59.288 40.000 0.00 0.00 0.00 3.51
2227 3726 6.824305 AGTTGAGACACTTATTTTGGGATG 57.176 37.500 0.00 0.00 0.00 3.51
2228 3727 7.287696 ACAAAGTTGAGACACTTATTTTGGGAT 59.712 33.333 0.00 0.00 35.87 3.85
2229 3728 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2230 3729 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2231 3730 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2234 3733 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
2235 3734 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
2236 3735 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
2237 3736 7.286215 AGCTAGTACAAAGTTGAGACACTTA 57.714 36.000 0.00 0.00 35.87 2.24
2238 3737 6.163135 AGCTAGTACAAAGTTGAGACACTT 57.837 37.500 0.00 0.00 38.74 3.16
2239 3738 5.793030 AGCTAGTACAAAGTTGAGACACT 57.207 39.130 0.00 0.00 0.00 3.55
2240 3739 6.846325 AAAGCTAGTACAAAGTTGAGACAC 57.154 37.500 0.00 0.00 0.00 3.67
2241 3740 7.723324 ACTAAAGCTAGTACAAAGTTGAGACA 58.277 34.615 0.00 0.00 36.56 3.41
2276 3775 9.280174 CCCAAAATAAGTGTCTCAAACTTAGTA 57.720 33.333 2.85 0.00 41.95 1.82
2277 3776 7.996644 TCCCAAAATAAGTGTCTCAAACTTAGT 59.003 33.333 2.85 0.00 41.95 2.24
2278 3777 8.391075 TCCCAAAATAAGTGTCTCAAACTTAG 57.609 34.615 2.85 0.00 41.95 2.18
2279 3778 8.754991 TTCCCAAAATAAGTGTCTCAAACTTA 57.245 30.769 0.00 0.00 42.63 2.24
2280 3779 7.654022 TTCCCAAAATAAGTGTCTCAAACTT 57.346 32.000 0.00 0.00 40.82 2.66
2281 3780 7.559897 TCTTTCCCAAAATAAGTGTCTCAAACT 59.440 33.333 0.00 0.00 0.00 2.66
2282 3781 7.712797 TCTTTCCCAAAATAAGTGTCTCAAAC 58.287 34.615 0.00 0.00 0.00 2.93
2283 3782 7.014230 CCTCTTTCCCAAAATAAGTGTCTCAAA 59.986 37.037 0.00 0.00 0.00 2.69
2284 3783 6.490040 CCTCTTTCCCAAAATAAGTGTCTCAA 59.510 38.462 0.00 0.00 0.00 3.02
2285 3784 6.003950 CCTCTTTCCCAAAATAAGTGTCTCA 58.996 40.000 0.00 0.00 0.00 3.27
2286 3785 5.416013 CCCTCTTTCCCAAAATAAGTGTCTC 59.584 44.000 0.00 0.00 0.00 3.36
2287 3786 5.074515 TCCCTCTTTCCCAAAATAAGTGTCT 59.925 40.000 0.00 0.00 0.00 3.41
2288 3787 5.321927 TCCCTCTTTCCCAAAATAAGTGTC 58.678 41.667 0.00 0.00 0.00 3.67
2289 3788 5.162980 ACTCCCTCTTTCCCAAAATAAGTGT 60.163 40.000 0.00 0.00 0.00 3.55
2290 3789 5.325239 ACTCCCTCTTTCCCAAAATAAGTG 58.675 41.667 0.00 0.00 0.00 3.16
2291 3790 5.600669 ACTCCCTCTTTCCCAAAATAAGT 57.399 39.130 0.00 0.00 0.00 2.24
2292 3791 9.868160 ATATTACTCCCTCTTTCCCAAAATAAG 57.132 33.333 0.00 0.00 0.00 1.73
2299 3798 9.907819 TCTTTATATATTACTCCCTCTTTCCCA 57.092 33.333 0.00 0.00 0.00 4.37
2306 3805 9.998106 TGCTTGTTCTTTATATATTACTCCCTC 57.002 33.333 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.