Multiple sequence alignment - TraesCS3B01G092100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G092100 chr3B 100.000 2548 0 0 1 2548 61127394 61129941 0.000000e+00 4706
1 TraesCS3B01G092100 chr3B 92.562 2030 75 26 538 2548 673607421 673605449 0.000000e+00 2843
2 TraesCS3B01G092100 chr3B 97.403 539 14 0 1 539 147893385 147893923 0.000000e+00 918
3 TraesCS3B01G092100 chr3B 97.403 539 14 0 1 539 232958955 232958417 0.000000e+00 918
4 TraesCS3B01G092100 chr3B 95.833 408 15 1 537 942 594400319 594399912 0.000000e+00 658
5 TraesCS3B01G092100 chr4A 94.792 2016 76 5 539 2548 610781856 610779864 0.000000e+00 3114
6 TraesCS3B01G092100 chr4A 95.015 1645 52 8 908 2548 705528913 705527295 0.000000e+00 2556
7 TraesCS3B01G092100 chr1B 93.168 2020 74 29 538 2548 581717563 581715599 0.000000e+00 2907
8 TraesCS3B01G092100 chr1B 93.020 2020 73 26 536 2548 520844122 520842164 0.000000e+00 2887
9 TraesCS3B01G092100 chr1B 92.567 2018 76 25 537 2548 232740731 232742680 0.000000e+00 2828
10 TraesCS3B01G092100 chr1B 95.140 1646 50 8 907 2548 585423521 585425140 0.000000e+00 2569
11 TraesCS3B01G092100 chr1B 92.476 731 28 9 1820 2548 442920860 442921565 0.000000e+00 1020
12 TraesCS3B01G092100 chr1B 97.774 539 12 0 1 539 437924621 437924083 0.000000e+00 929
13 TraesCS3B01G092100 chr1B 97.378 534 14 0 6 539 72826860 72826327 0.000000e+00 909
14 TraesCS3B01G092100 chr1B 92.325 443 8 8 2107 2548 130646532 130646949 7.800000e-170 606
15 TraesCS3B01G092100 chr1B 90.933 386 10 6 2164 2548 427481735 427481374 1.760000e-136 496
16 TraesCS3B01G092100 chr7B 93.158 2017 75 25 539 2548 720989191 720987231 0.000000e+00 2902
17 TraesCS3B01G092100 chr7B 93.169 1991 74 24 564 2548 708943230 708941296 0.000000e+00 2867
18 TraesCS3B01G092100 chr7B 95.455 1584 65 7 539 2117 22313611 22315192 0.000000e+00 2519
19 TraesCS3B01G092100 chr7B 98.145 539 10 0 1 539 257685608 257685070 0.000000e+00 941
20 TraesCS3B01G092100 chr7B 95.588 408 16 1 537 942 670173346 670172939 0.000000e+00 652
21 TraesCS3B01G092100 chr6B 92.956 2016 79 25 540 2548 81368401 81366442 0.000000e+00 2878
22 TraesCS3B01G092100 chr6B 95.179 1618 47 13 937 2548 527993238 527991646 0.000000e+00 2527
23 TraesCS3B01G092100 chr6B 97.959 539 11 0 1 539 459093993 459094531 0.000000e+00 935
24 TraesCS3B01G092100 chr6B 97.588 539 12 1 1 539 618597807 618597270 0.000000e+00 922
25 TraesCS3B01G092100 chr4B 92.758 2016 74 26 540 2548 17791851 17789901 0.000000e+00 2848
26 TraesCS3B01G092100 chr4B 92.167 2017 89 30 541 2548 502212941 502210985 0.000000e+00 2785
27 TraesCS3B01G092100 chr4B 91.762 2015 102 31 538 2548 605198586 605196632 0.000000e+00 2743
28 TraesCS3B01G092100 chr4B 94.519 1642 57 15 912 2548 210436770 210438383 0.000000e+00 2503
29 TraesCS3B01G092100 chr4B 94.005 1618 56 14 937 2548 622331559 622329977 0.000000e+00 2412
30 TraesCS3B01G092100 chr4B 97.032 539 16 0 1 539 17336808 17337346 0.000000e+00 907
31 TraesCS3B01G092100 chr4B 88.839 448 21 8 2104 2548 645966431 645966010 8.080000e-145 523
32 TraesCS3B01G092100 chr2B 94.263 1534 48 14 1019 2548 695139807 695138310 0.000000e+00 2309
33 TraesCS3B01G092100 chr2B 97.403 539 14 0 1 539 69607896 69608434 0.000000e+00 918
34 TraesCS3B01G092100 chr2B 95.567 406 16 1 539 942 384810182 384809777 0.000000e+00 649
35 TraesCS3B01G092100 chr2B 95.309 405 19 0 538 942 692955895 692956299 0.000000e+00 643
36 TraesCS3B01G092100 chr2B 94.878 410 19 1 537 944 546410283 546410692 7.690000e-180 640
37 TraesCS3B01G092100 chr2B 90.402 448 15 8 2104 2548 767054092 767053670 4.760000e-157 564
38 TraesCS3B01G092100 chr5B 95.320 406 19 0 537 942 81902663 81903068 0.000000e+00 645
39 TraesCS3B01G092100 chr6A 94.686 414 20 2 529 942 30121966 30121555 2.140000e-180 641
40 TraesCS3B01G092100 chr6A 87.696 447 28 12 2104 2548 608672290 608672711 1.760000e-136 496
41 TraesCS3B01G092100 chr6A 89.219 269 5 6 2281 2548 30120332 30120087 5.290000e-82 315
42 TraesCS3B01G092100 chr2D 91.704 446 11 6 2104 2548 64510066 64510486 1.690000e-166 595
43 TraesCS3B01G092100 chr2D 91.723 447 10 9 2104 2548 610931993 610932414 1.690000e-166 595
44 TraesCS3B01G092100 chr2D 90.222 450 15 13 2104 2548 331198717 331199142 6.160000e-156 560
45 TraesCS3B01G092100 chrUn 89.732 448 19 9 2104 2548 60560077 60560500 4.790000e-152 547
46 TraesCS3B01G092100 chrUn 88.591 447 23 9 2104 2548 37354413 37353993 3.760000e-143 518
47 TraesCS3B01G092100 chrUn 88.591 447 23 9 2104 2548 287429940 287429520 3.760000e-143 518
48 TraesCS3B01G092100 chrUn 87.444 446 27 14 2104 2548 406119830 406120247 1.060000e-133 486
49 TraesCS3B01G092100 chrUn 87.082 449 26 16 2104 2548 284636382 284636802 1.770000e-131 479
50 TraesCS3B01G092100 chrUn 86.771 446 30 14 2104 2548 175763656 175764073 1.070000e-128 470
51 TraesCS3B01G092100 chrUn 86.771 446 30 14 2104 2548 231574332 231574749 1.070000e-128 470
52 TraesCS3B01G092100 chrUn 86.742 445 30 12 2104 2548 43127987 43127572 3.840000e-128 468
53 TraesCS3B01G092100 chrUn 86.475 451 27 15 2104 2548 368112931 368113353 4.970000e-127 464
54 TraesCS3B01G092100 chrUn 84.047 257 9 10 2293 2548 43409531 43409756 4.270000e-53 219
55 TraesCS3B01G092100 chr4D 89.709 447 19 12 2104 2548 459100863 459100442 1.720000e-151 545
56 TraesCS3B01G092100 chr4D 88.789 446 23 12 2104 2548 43271204 43270785 2.900000e-144 521
57 TraesCS3B01G092100 chr4D 88.248 451 22 14 2103 2548 496431816 496431392 6.290000e-141 510
58 TraesCS3B01G092100 chr5D 88.814 447 22 13 2104 2548 520495998 520495578 8.080000e-145 523
59 TraesCS3B01G092100 chr6D 88.565 446 23 12 2104 2548 277565868 277565450 1.350000e-142 516
60 TraesCS3B01G092100 chr1A 87.919 447 28 11 2104 2548 16894156 16893734 1.050000e-138 503
61 TraesCS3B01G092100 chr1A 82.824 262 10 13 2290 2548 543261163 543261392 4.300000e-48 202
62 TraesCS3B01G092100 chr1D 87.583 451 18 14 2104 2548 17039193 17038775 2.950000e-134 488
63 TraesCS3B01G092100 chr1D 86.719 256 11 8 2293 2548 25466013 25466245 1.940000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G092100 chr3B 61127394 61129941 2547 False 4706 4706 100.0000 1 2548 1 chr3B.!!$F1 2547
1 TraesCS3B01G092100 chr3B 673605449 673607421 1972 True 2843 2843 92.5620 538 2548 1 chr3B.!!$R3 2010
2 TraesCS3B01G092100 chr3B 147893385 147893923 538 False 918 918 97.4030 1 539 1 chr3B.!!$F2 538
3 TraesCS3B01G092100 chr3B 232958417 232958955 538 True 918 918 97.4030 1 539 1 chr3B.!!$R1 538
4 TraesCS3B01G092100 chr4A 610779864 610781856 1992 True 3114 3114 94.7920 539 2548 1 chr4A.!!$R1 2009
5 TraesCS3B01G092100 chr4A 705527295 705528913 1618 True 2556 2556 95.0150 908 2548 1 chr4A.!!$R2 1640
6 TraesCS3B01G092100 chr1B 581715599 581717563 1964 True 2907 2907 93.1680 538 2548 1 chr1B.!!$R5 2010
7 TraesCS3B01G092100 chr1B 520842164 520844122 1958 True 2887 2887 93.0200 536 2548 1 chr1B.!!$R4 2012
8 TraesCS3B01G092100 chr1B 232740731 232742680 1949 False 2828 2828 92.5670 537 2548 1 chr1B.!!$F2 2011
9 TraesCS3B01G092100 chr1B 585423521 585425140 1619 False 2569 2569 95.1400 907 2548 1 chr1B.!!$F4 1641
10 TraesCS3B01G092100 chr1B 442920860 442921565 705 False 1020 1020 92.4760 1820 2548 1 chr1B.!!$F3 728
11 TraesCS3B01G092100 chr1B 437924083 437924621 538 True 929 929 97.7740 1 539 1 chr1B.!!$R3 538
12 TraesCS3B01G092100 chr1B 72826327 72826860 533 True 909 909 97.3780 6 539 1 chr1B.!!$R1 533
13 TraesCS3B01G092100 chr7B 720987231 720989191 1960 True 2902 2902 93.1580 539 2548 1 chr7B.!!$R4 2009
14 TraesCS3B01G092100 chr7B 708941296 708943230 1934 True 2867 2867 93.1690 564 2548 1 chr7B.!!$R3 1984
15 TraesCS3B01G092100 chr7B 22313611 22315192 1581 False 2519 2519 95.4550 539 2117 1 chr7B.!!$F1 1578
16 TraesCS3B01G092100 chr7B 257685070 257685608 538 True 941 941 98.1450 1 539 1 chr7B.!!$R1 538
17 TraesCS3B01G092100 chr6B 81366442 81368401 1959 True 2878 2878 92.9560 540 2548 1 chr6B.!!$R1 2008
18 TraesCS3B01G092100 chr6B 527991646 527993238 1592 True 2527 2527 95.1790 937 2548 1 chr6B.!!$R2 1611
19 TraesCS3B01G092100 chr6B 459093993 459094531 538 False 935 935 97.9590 1 539 1 chr6B.!!$F1 538
20 TraesCS3B01G092100 chr6B 618597270 618597807 537 True 922 922 97.5880 1 539 1 chr6B.!!$R3 538
21 TraesCS3B01G092100 chr4B 17789901 17791851 1950 True 2848 2848 92.7580 540 2548 1 chr4B.!!$R1 2008
22 TraesCS3B01G092100 chr4B 502210985 502212941 1956 True 2785 2785 92.1670 541 2548 1 chr4B.!!$R2 2007
23 TraesCS3B01G092100 chr4B 605196632 605198586 1954 True 2743 2743 91.7620 538 2548 1 chr4B.!!$R3 2010
24 TraesCS3B01G092100 chr4B 210436770 210438383 1613 False 2503 2503 94.5190 912 2548 1 chr4B.!!$F2 1636
25 TraesCS3B01G092100 chr4B 622329977 622331559 1582 True 2412 2412 94.0050 937 2548 1 chr4B.!!$R4 1611
26 TraesCS3B01G092100 chr4B 17336808 17337346 538 False 907 907 97.0320 1 539 1 chr4B.!!$F1 538
27 TraesCS3B01G092100 chr2B 695138310 695139807 1497 True 2309 2309 94.2630 1019 2548 1 chr2B.!!$R2 1529
28 TraesCS3B01G092100 chr2B 69607896 69608434 538 False 918 918 97.4030 1 539 1 chr2B.!!$F1 538
29 TraesCS3B01G092100 chr6A 30120087 30121966 1879 True 478 641 91.9525 529 2548 2 chr6A.!!$R1 2019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 245 0.030504 CACTGCAATTCACCGCACAA 59.969 50.0 0.0 0.0 33.75 3.33 F
470 471 0.375106 GCATAGTTCACAAGGAGCGC 59.625 55.0 0.0 0.0 0.00 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1068 0.326264 GAAGACAGGCATCCCACACT 59.674 55.000 0.0 0.0 0.0 3.55 R
1850 1939 1.068895 CATCTACCAGAGCTGAGGCAG 59.931 57.143 0.0 0.0 41.7 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.560966 CACATTATGTGTAGGTTCAACCC 57.439 43.478 16.45 0.00 43.08 4.11
111 112 0.331954 AGCTCCTCCTCGTTACCTGA 59.668 55.000 0.00 0.00 0.00 3.86
112 113 1.063567 AGCTCCTCCTCGTTACCTGAT 60.064 52.381 0.00 0.00 0.00 2.90
113 114 1.757699 GCTCCTCCTCGTTACCTGATT 59.242 52.381 0.00 0.00 0.00 2.57
114 115 2.223852 GCTCCTCCTCGTTACCTGATTC 60.224 54.545 0.00 0.00 0.00 2.52
115 116 3.024547 CTCCTCCTCGTTACCTGATTCA 58.975 50.000 0.00 0.00 0.00 2.57
116 117 3.639094 CTCCTCCTCGTTACCTGATTCAT 59.361 47.826 0.00 0.00 0.00 2.57
117 118 3.637229 TCCTCCTCGTTACCTGATTCATC 59.363 47.826 0.00 0.00 0.00 2.92
118 119 3.384789 CCTCCTCGTTACCTGATTCATCA 59.615 47.826 0.00 0.00 35.16 3.07
119 120 4.039730 CCTCCTCGTTACCTGATTCATCAT 59.960 45.833 0.00 0.00 36.02 2.45
120 121 5.243954 CCTCCTCGTTACCTGATTCATCATA 59.756 44.000 0.00 0.00 36.02 2.15
121 122 6.332735 TCCTCGTTACCTGATTCATCATAG 57.667 41.667 0.00 0.00 36.02 2.23
122 123 5.243954 TCCTCGTTACCTGATTCATCATAGG 59.756 44.000 0.00 0.00 36.02 2.57
123 124 5.243954 CCTCGTTACCTGATTCATCATAGGA 59.756 44.000 0.00 0.00 36.02 2.94
124 125 6.239317 CCTCGTTACCTGATTCATCATAGGAA 60.239 42.308 0.00 0.00 36.02 3.36
125 126 7.119709 TCGTTACCTGATTCATCATAGGAAA 57.880 36.000 0.00 0.00 36.02 3.13
126 127 7.735917 TCGTTACCTGATTCATCATAGGAAAT 58.264 34.615 0.00 0.00 36.02 2.17
127 128 8.866093 TCGTTACCTGATTCATCATAGGAAATA 58.134 33.333 0.00 0.00 36.02 1.40
128 129 9.489084 CGTTACCTGATTCATCATAGGAAATAA 57.511 33.333 0.00 0.00 36.02 1.40
138 139 9.843704 TTCATCATAGGAAATAATAGGAGGAGA 57.156 33.333 0.00 0.00 0.00 3.71
142 143 9.051259 TCATAGGAAATAATAGGAGGAGATTGG 57.949 37.037 0.00 0.00 0.00 3.16
143 144 6.710499 AGGAAATAATAGGAGGAGATTGGG 57.290 41.667 0.00 0.00 0.00 4.12
144 145 6.402442 AGGAAATAATAGGAGGAGATTGGGA 58.598 40.000 0.00 0.00 0.00 4.37
145 146 6.857222 AGGAAATAATAGGAGGAGATTGGGAA 59.143 38.462 0.00 0.00 0.00 3.97
146 147 7.018049 AGGAAATAATAGGAGGAGATTGGGAAG 59.982 40.741 0.00 0.00 0.00 3.46
147 148 5.770685 ATAATAGGAGGAGATTGGGAAGC 57.229 43.478 0.00 0.00 0.00 3.86
148 149 1.807814 TAGGAGGAGATTGGGAAGCC 58.192 55.000 0.00 0.00 0.00 4.35
149 150 0.045469 AGGAGGAGATTGGGAAGCCT 59.955 55.000 0.00 0.00 0.00 4.58
150 151 0.472044 GGAGGAGATTGGGAAGCCTC 59.528 60.000 0.00 0.00 43.40 4.70
151 152 1.506025 GAGGAGATTGGGAAGCCTCT 58.494 55.000 0.00 0.00 41.44 3.69
152 153 1.843206 GAGGAGATTGGGAAGCCTCTT 59.157 52.381 0.00 0.00 41.44 2.85
153 154 1.843206 AGGAGATTGGGAAGCCTCTTC 59.157 52.381 0.00 0.00 0.00 2.87
154 155 1.133945 GGAGATTGGGAAGCCTCTTCC 60.134 57.143 15.37 15.37 37.86 3.46
161 162 2.816777 GGAAGCCTCTTCCCTTTCAT 57.183 50.000 13.26 0.00 32.48 2.57
162 163 3.093057 GGAAGCCTCTTCCCTTTCATT 57.907 47.619 13.26 0.00 32.48 2.57
163 164 4.236527 GGAAGCCTCTTCCCTTTCATTA 57.763 45.455 13.26 0.00 32.48 1.90
164 165 4.203226 GGAAGCCTCTTCCCTTTCATTAG 58.797 47.826 13.26 0.00 32.48 1.73
165 166 4.324641 GGAAGCCTCTTCCCTTTCATTAGT 60.325 45.833 13.26 0.00 32.48 2.24
166 167 5.104485 GGAAGCCTCTTCCCTTTCATTAGTA 60.104 44.000 13.26 0.00 32.48 1.82
167 168 6.409810 GGAAGCCTCTTCCCTTTCATTAGTAT 60.410 42.308 13.26 0.00 32.48 2.12
168 169 6.582929 AGCCTCTTCCCTTTCATTAGTATT 57.417 37.500 0.00 0.00 0.00 1.89
169 170 6.596621 AGCCTCTTCCCTTTCATTAGTATTC 58.403 40.000 0.00 0.00 0.00 1.75
170 171 6.388394 AGCCTCTTCCCTTTCATTAGTATTCT 59.612 38.462 0.00 0.00 0.00 2.40
171 172 6.708502 GCCTCTTCCCTTTCATTAGTATTCTC 59.291 42.308 0.00 0.00 0.00 2.87
172 173 7.635971 GCCTCTTCCCTTTCATTAGTATTCTCA 60.636 40.741 0.00 0.00 0.00 3.27
173 174 8.435982 CCTCTTCCCTTTCATTAGTATTCTCAT 58.564 37.037 0.00 0.00 0.00 2.90
174 175 9.487790 CTCTTCCCTTTCATTAGTATTCTCATC 57.512 37.037 0.00 0.00 0.00 2.92
175 176 8.992349 TCTTCCCTTTCATTAGTATTCTCATCA 58.008 33.333 0.00 0.00 0.00 3.07
176 177 9.790344 CTTCCCTTTCATTAGTATTCTCATCAT 57.210 33.333 0.00 0.00 0.00 2.45
177 178 9.784531 TTCCCTTTCATTAGTATTCTCATCATC 57.215 33.333 0.00 0.00 0.00 2.92
178 179 9.163894 TCCCTTTCATTAGTATTCTCATCATCT 57.836 33.333 0.00 0.00 0.00 2.90
179 180 9.790344 CCCTTTCATTAGTATTCTCATCATCTT 57.210 33.333 0.00 0.00 0.00 2.40
187 188 7.507733 AGTATTCTCATCATCTTCCATTTGC 57.492 36.000 0.00 0.00 0.00 3.68
188 189 7.288560 AGTATTCTCATCATCTTCCATTTGCT 58.711 34.615 0.00 0.00 0.00 3.91
189 190 7.778853 AGTATTCTCATCATCTTCCATTTGCTT 59.221 33.333 0.00 0.00 0.00 3.91
190 191 6.845758 TTCTCATCATCTTCCATTTGCTTT 57.154 33.333 0.00 0.00 0.00 3.51
191 192 6.446781 TCTCATCATCTTCCATTTGCTTTC 57.553 37.500 0.00 0.00 0.00 2.62
192 193 6.185511 TCTCATCATCTTCCATTTGCTTTCT 58.814 36.000 0.00 0.00 0.00 2.52
193 194 6.662234 TCTCATCATCTTCCATTTGCTTTCTT 59.338 34.615 0.00 0.00 0.00 2.52
194 195 7.177921 TCTCATCATCTTCCATTTGCTTTCTTT 59.822 33.333 0.00 0.00 0.00 2.52
195 196 7.673180 TCATCATCTTCCATTTGCTTTCTTTT 58.327 30.769 0.00 0.00 0.00 2.27
196 197 7.816031 TCATCATCTTCCATTTGCTTTCTTTTC 59.184 33.333 0.00 0.00 0.00 2.29
197 198 7.294017 TCATCTTCCATTTGCTTTCTTTTCT 57.706 32.000 0.00 0.00 0.00 2.52
198 199 7.729116 TCATCTTCCATTTGCTTTCTTTTCTT 58.271 30.769 0.00 0.00 0.00 2.52
199 200 8.206189 TCATCTTCCATTTGCTTTCTTTTCTTT 58.794 29.630 0.00 0.00 0.00 2.52
200 201 9.480053 CATCTTCCATTTGCTTTCTTTTCTTTA 57.520 29.630 0.00 0.00 0.00 1.85
201 202 9.702494 ATCTTCCATTTGCTTTCTTTTCTTTAG 57.298 29.630 0.00 0.00 0.00 1.85
202 203 8.143835 TCTTCCATTTGCTTTCTTTTCTTTAGG 58.856 33.333 0.00 0.00 0.00 2.69
203 204 7.360113 TCCATTTGCTTTCTTTTCTTTAGGT 57.640 32.000 0.00 0.00 0.00 3.08
204 205 8.472007 TCCATTTGCTTTCTTTTCTTTAGGTA 57.528 30.769 0.00 0.00 0.00 3.08
205 206 8.919145 TCCATTTGCTTTCTTTTCTTTAGGTAA 58.081 29.630 0.00 0.00 0.00 2.85
206 207 9.710900 CCATTTGCTTTCTTTTCTTTAGGTAAT 57.289 29.630 0.00 0.00 0.00 1.89
209 210 9.541143 TTTGCTTTCTTTTCTTTAGGTAATTGG 57.459 29.630 0.00 0.00 0.00 3.16
210 211 7.151976 TGCTTTCTTTTCTTTAGGTAATTGGC 58.848 34.615 0.00 0.00 0.00 4.52
211 212 7.151976 GCTTTCTTTTCTTTAGGTAATTGGCA 58.848 34.615 0.00 0.00 0.00 4.92
212 213 7.655732 GCTTTCTTTTCTTTAGGTAATTGGCAA 59.344 33.333 0.68 0.68 0.00 4.52
213 214 9.710900 CTTTCTTTTCTTTAGGTAATTGGCAAT 57.289 29.630 6.96 6.96 0.00 3.56
226 227 9.432982 AGGTAATTGGCAATATAAGGATTTTCA 57.567 29.630 14.05 0.00 0.00 2.69
227 228 9.476202 GGTAATTGGCAATATAAGGATTTTCAC 57.524 33.333 14.05 0.00 0.00 3.18
230 231 6.147864 TGGCAATATAAGGATTTTCACTGC 57.852 37.500 0.00 0.00 0.00 4.40
231 232 5.655974 TGGCAATATAAGGATTTTCACTGCA 59.344 36.000 0.00 0.00 0.00 4.41
232 233 6.154192 TGGCAATATAAGGATTTTCACTGCAA 59.846 34.615 0.00 0.00 0.00 4.08
233 234 7.147689 TGGCAATATAAGGATTTTCACTGCAAT 60.148 33.333 0.00 0.00 0.00 3.56
234 235 7.712205 GGCAATATAAGGATTTTCACTGCAATT 59.288 33.333 0.00 0.00 0.00 2.32
235 236 8.758715 GCAATATAAGGATTTTCACTGCAATTC 58.241 33.333 0.00 0.00 0.00 2.17
236 237 9.806203 CAATATAAGGATTTTCACTGCAATTCA 57.194 29.630 0.00 0.00 0.00 2.57
237 238 9.807649 AATATAAGGATTTTCACTGCAATTCAC 57.192 29.630 0.00 0.00 0.00 3.18
238 239 4.525912 AGGATTTTCACTGCAATTCACC 57.474 40.909 0.00 0.00 0.00 4.02
239 240 3.057315 AGGATTTTCACTGCAATTCACCG 60.057 43.478 0.00 0.00 0.00 4.94
240 241 2.132740 TTTTCACTGCAATTCACCGC 57.867 45.000 0.00 0.00 0.00 5.68
241 242 1.028130 TTTCACTGCAATTCACCGCA 58.972 45.000 0.00 0.00 36.52 5.69
242 243 0.310543 TTCACTGCAATTCACCGCAC 59.689 50.000 0.00 0.00 33.75 5.34
243 244 0.817229 TCACTGCAATTCACCGCACA 60.817 50.000 0.00 0.00 33.75 4.57
244 245 0.030504 CACTGCAATTCACCGCACAA 59.969 50.000 0.00 0.00 33.75 3.33
245 246 0.961019 ACTGCAATTCACCGCACAAT 59.039 45.000 0.00 0.00 33.75 2.71
246 247 2.095314 CACTGCAATTCACCGCACAATA 60.095 45.455 0.00 0.00 33.75 1.90
247 248 2.095263 ACTGCAATTCACCGCACAATAC 60.095 45.455 0.00 0.00 33.75 1.89
248 249 1.882623 TGCAATTCACCGCACAATACA 59.117 42.857 0.00 0.00 31.95 2.29
249 250 2.491298 TGCAATTCACCGCACAATACAT 59.509 40.909 0.00 0.00 31.95 2.29
250 251 3.691609 TGCAATTCACCGCACAATACATA 59.308 39.130 0.00 0.00 31.95 2.29
251 252 4.337836 TGCAATTCACCGCACAATACATAT 59.662 37.500 0.00 0.00 31.95 1.78
252 253 5.529060 TGCAATTCACCGCACAATACATATA 59.471 36.000 0.00 0.00 31.95 0.86
253 254 6.038714 TGCAATTCACCGCACAATACATATAA 59.961 34.615 0.00 0.00 31.95 0.98
254 255 6.915300 GCAATTCACCGCACAATACATATAAA 59.085 34.615 0.00 0.00 0.00 1.40
255 256 7.594758 GCAATTCACCGCACAATACATATAAAT 59.405 33.333 0.00 0.00 0.00 1.40
256 257 9.117145 CAATTCACCGCACAATACATATAAATC 57.883 33.333 0.00 0.00 0.00 2.17
257 258 8.621532 ATTCACCGCACAATACATATAAATCT 57.378 30.769 0.00 0.00 0.00 2.40
258 259 8.445275 TTCACCGCACAATACATATAAATCTT 57.555 30.769 0.00 0.00 0.00 2.40
259 260 8.083462 TCACCGCACAATACATATAAATCTTC 57.917 34.615 0.00 0.00 0.00 2.87
260 261 7.931407 TCACCGCACAATACATATAAATCTTCT 59.069 33.333 0.00 0.00 0.00 2.85
261 262 8.223769 CACCGCACAATACATATAAATCTTCTC 58.776 37.037 0.00 0.00 0.00 2.87
262 263 8.150945 ACCGCACAATACATATAAATCTTCTCT 58.849 33.333 0.00 0.00 0.00 3.10
263 264 9.639601 CCGCACAATACATATAAATCTTCTCTA 57.360 33.333 0.00 0.00 0.00 2.43
283 284 9.964354 TTCTCTAGATCAAAATCAAGAAATCCA 57.036 29.630 0.00 0.00 34.07 3.41
319 320 8.990163 ATTTTGGAATACCCTCATTTATACGT 57.010 30.769 0.00 0.00 35.38 3.57
320 321 8.810990 TTTTGGAATACCCTCATTTATACGTT 57.189 30.769 0.00 0.00 35.38 3.99
321 322 8.810990 TTTGGAATACCCTCATTTATACGTTT 57.189 30.769 0.00 0.00 35.38 3.60
322 323 8.441312 TTGGAATACCCTCATTTATACGTTTC 57.559 34.615 0.00 0.00 35.38 2.78
323 324 7.566569 TGGAATACCCTCATTTATACGTTTCA 58.433 34.615 0.00 0.00 35.38 2.69
324 325 8.215050 TGGAATACCCTCATTTATACGTTTCAT 58.785 33.333 0.00 0.00 35.38 2.57
325 326 9.063615 GGAATACCCTCATTTATACGTTTCATT 57.936 33.333 0.00 0.00 0.00 2.57
328 329 9.847224 ATACCCTCATTTATACGTTTCATTTCT 57.153 29.630 0.00 0.00 0.00 2.52
329 330 8.575649 ACCCTCATTTATACGTTTCATTTCTT 57.424 30.769 0.00 0.00 0.00 2.52
330 331 8.674607 ACCCTCATTTATACGTTTCATTTCTTC 58.325 33.333 0.00 0.00 0.00 2.87
331 332 8.673711 CCCTCATTTATACGTTTCATTTCTTCA 58.326 33.333 0.00 0.00 0.00 3.02
338 339 7.931578 ATACGTTTCATTTCTTCATAACCCA 57.068 32.000 0.00 0.00 0.00 4.51
339 340 6.642707 ACGTTTCATTTCTTCATAACCCAA 57.357 33.333 0.00 0.00 0.00 4.12
340 341 7.045126 ACGTTTCATTTCTTCATAACCCAAA 57.955 32.000 0.00 0.00 0.00 3.28
341 342 7.493367 ACGTTTCATTTCTTCATAACCCAAAA 58.507 30.769 0.00 0.00 0.00 2.44
342 343 7.651704 ACGTTTCATTTCTTCATAACCCAAAAG 59.348 33.333 0.00 0.00 0.00 2.27
343 344 7.865385 CGTTTCATTTCTTCATAACCCAAAAGA 59.135 33.333 0.00 0.00 0.00 2.52
344 345 9.541143 GTTTCATTTCTTCATAACCCAAAAGAA 57.459 29.630 0.00 0.00 36.29 2.52
345 346 9.762933 TTTCATTTCTTCATAACCCAAAAGAAG 57.237 29.630 0.00 0.00 38.55 2.85
346 347 7.895759 TCATTTCTTCATAACCCAAAAGAAGG 58.104 34.615 0.00 0.00 38.55 3.46
347 348 5.722021 TTCTTCATAACCCAAAAGAAGGC 57.278 39.130 0.00 0.00 37.04 4.35
348 349 4.998051 TCTTCATAACCCAAAAGAAGGCT 58.002 39.130 0.00 0.00 37.04 4.58
349 350 6.134535 TCTTCATAACCCAAAAGAAGGCTA 57.865 37.500 0.00 0.00 37.04 3.93
350 351 6.548321 TCTTCATAACCCAAAAGAAGGCTAA 58.452 36.000 0.00 0.00 37.04 3.09
351 352 6.659242 TCTTCATAACCCAAAAGAAGGCTAAG 59.341 38.462 0.00 0.00 37.04 2.18
352 353 4.705023 TCATAACCCAAAAGAAGGCTAAGC 59.295 41.667 0.00 0.00 0.00 3.09
353 354 2.980246 ACCCAAAAGAAGGCTAAGCT 57.020 45.000 0.00 0.00 0.00 3.74
354 355 2.796557 ACCCAAAAGAAGGCTAAGCTC 58.203 47.619 0.00 0.00 0.00 4.09
355 356 2.376855 ACCCAAAAGAAGGCTAAGCTCT 59.623 45.455 0.00 0.00 0.00 4.09
356 357 3.181428 ACCCAAAAGAAGGCTAAGCTCTT 60.181 43.478 0.00 0.00 0.00 2.85
357 358 3.829026 CCCAAAAGAAGGCTAAGCTCTTT 59.171 43.478 6.17 6.17 40.31 2.52
358 359 5.010282 CCCAAAAGAAGGCTAAGCTCTTTA 58.990 41.667 11.25 0.00 38.21 1.85
359 360 5.654209 CCCAAAAGAAGGCTAAGCTCTTTAT 59.346 40.000 11.25 1.97 38.21 1.40
360 361 6.405176 CCCAAAAGAAGGCTAAGCTCTTTATG 60.405 42.308 11.25 11.07 38.21 1.90
361 362 6.375455 CCAAAAGAAGGCTAAGCTCTTTATGA 59.625 38.462 11.25 0.00 38.21 2.15
362 363 7.067981 CCAAAAGAAGGCTAAGCTCTTTATGAT 59.932 37.037 11.25 0.00 38.21 2.45
363 364 7.565323 AAAGAAGGCTAAGCTCTTTATGATG 57.435 36.000 9.57 0.00 37.58 3.07
364 365 5.062528 AGAAGGCTAAGCTCTTTATGATGC 58.937 41.667 0.00 0.00 0.00 3.91
365 366 4.703379 AGGCTAAGCTCTTTATGATGCT 57.297 40.909 0.00 0.00 37.37 3.79
366 367 4.640364 AGGCTAAGCTCTTTATGATGCTC 58.360 43.478 0.00 0.00 34.38 4.26
367 368 4.102210 AGGCTAAGCTCTTTATGATGCTCA 59.898 41.667 0.00 0.00 34.38 4.26
368 369 4.818546 GGCTAAGCTCTTTATGATGCTCAA 59.181 41.667 0.00 0.00 34.38 3.02
369 370 5.049543 GGCTAAGCTCTTTATGATGCTCAAG 60.050 44.000 0.00 0.00 34.38 3.02
370 371 5.049543 GCTAAGCTCTTTATGATGCTCAAGG 60.050 44.000 0.00 0.00 34.38 3.61
371 372 3.818180 AGCTCTTTATGATGCTCAAGGG 58.182 45.455 0.00 0.00 0.00 3.95
372 373 3.201708 AGCTCTTTATGATGCTCAAGGGT 59.798 43.478 0.00 0.00 0.00 4.34
373 374 4.410228 AGCTCTTTATGATGCTCAAGGGTA 59.590 41.667 0.00 0.00 0.00 3.69
374 375 5.104360 AGCTCTTTATGATGCTCAAGGGTAA 60.104 40.000 0.00 0.00 0.00 2.85
375 376 5.767168 GCTCTTTATGATGCTCAAGGGTAAT 59.233 40.000 0.00 0.00 0.00 1.89
376 377 6.072783 GCTCTTTATGATGCTCAAGGGTAATC 60.073 42.308 0.00 0.00 0.00 1.75
377 378 6.899089 TCTTTATGATGCTCAAGGGTAATCA 58.101 36.000 0.00 0.00 0.00 2.57
378 379 7.345691 TCTTTATGATGCTCAAGGGTAATCAA 58.654 34.615 0.00 0.00 0.00 2.57
379 380 7.833682 TCTTTATGATGCTCAAGGGTAATCAAA 59.166 33.333 0.00 0.00 0.00 2.69
380 381 8.537728 TTTATGATGCTCAAGGGTAATCAAAT 57.462 30.769 0.00 0.00 0.00 2.32
381 382 8.537728 TTATGATGCTCAAGGGTAATCAAATT 57.462 30.769 0.00 0.00 0.00 1.82
382 383 9.639563 TTATGATGCTCAAGGGTAATCAAATTA 57.360 29.630 0.00 0.00 0.00 1.40
383 384 8.716674 ATGATGCTCAAGGGTAATCAAATTAT 57.283 30.769 0.00 0.00 0.00 1.28
384 385 8.169977 TGATGCTCAAGGGTAATCAAATTATC 57.830 34.615 0.00 0.00 0.00 1.75
385 386 7.779326 TGATGCTCAAGGGTAATCAAATTATCA 59.221 33.333 0.00 0.00 0.00 2.15
386 387 7.333528 TGCTCAAGGGTAATCAAATTATCAC 57.666 36.000 0.00 0.00 0.00 3.06
387 388 6.889177 TGCTCAAGGGTAATCAAATTATCACA 59.111 34.615 0.00 0.00 0.00 3.58
388 389 7.395772 TGCTCAAGGGTAATCAAATTATCACAA 59.604 33.333 0.00 0.00 0.00 3.33
389 390 8.416329 GCTCAAGGGTAATCAAATTATCACAAT 58.584 33.333 0.00 0.00 0.00 2.71
400 401 9.734620 ATCAAATTATCACAATATTTGGACACG 57.265 29.630 0.00 0.00 34.17 4.49
401 402 8.951243 TCAAATTATCACAATATTTGGACACGA 58.049 29.630 0.00 0.00 34.17 4.35
402 403 9.009327 CAAATTATCACAATATTTGGACACGAC 57.991 33.333 0.00 0.00 34.12 4.34
403 404 8.506168 AATTATCACAATATTTGGACACGACT 57.494 30.769 0.00 0.00 34.12 4.18
404 405 7.915293 TTATCACAATATTTGGACACGACTT 57.085 32.000 0.00 0.00 34.12 3.01
405 406 5.605564 TCACAATATTTGGACACGACTTG 57.394 39.130 0.00 0.00 34.12 3.16
406 407 5.301555 TCACAATATTTGGACACGACTTGA 58.698 37.500 0.00 0.00 34.12 3.02
407 408 5.937540 TCACAATATTTGGACACGACTTGAT 59.062 36.000 0.00 0.00 34.12 2.57
408 409 6.092122 TCACAATATTTGGACACGACTTGATC 59.908 38.462 0.00 0.00 34.12 2.92
409 410 5.937540 ACAATATTTGGACACGACTTGATCA 59.062 36.000 0.00 0.00 34.12 2.92
410 411 6.599244 ACAATATTTGGACACGACTTGATCAT 59.401 34.615 0.00 0.00 34.12 2.45
411 412 4.952262 ATTTGGACACGACTTGATCATG 57.048 40.909 7.04 7.04 0.00 3.07
412 413 3.676291 TTGGACACGACTTGATCATGA 57.324 42.857 15.03 0.00 0.00 3.07
413 414 3.676291 TGGACACGACTTGATCATGAA 57.324 42.857 15.03 0.00 0.00 2.57
414 415 4.001618 TGGACACGACTTGATCATGAAA 57.998 40.909 15.03 0.00 0.00 2.69
415 416 3.745975 TGGACACGACTTGATCATGAAAC 59.254 43.478 15.03 0.00 0.00 2.78
416 417 3.745975 GGACACGACTTGATCATGAAACA 59.254 43.478 15.03 0.13 0.00 2.83
417 418 4.213270 GGACACGACTTGATCATGAAACAA 59.787 41.667 15.03 14.77 0.00 2.83
418 419 5.277779 GGACACGACTTGATCATGAAACAAA 60.278 40.000 15.03 2.61 0.00 2.83
419 420 6.317789 ACACGACTTGATCATGAAACAAAT 57.682 33.333 15.03 9.08 0.00 2.32
420 421 7.360861 GGACACGACTTGATCATGAAACAAATA 60.361 37.037 15.03 0.29 0.00 1.40
421 422 7.521529 ACACGACTTGATCATGAAACAAATAG 58.478 34.615 15.03 10.96 0.00 1.73
422 423 6.467047 CACGACTTGATCATGAAACAAATAGC 59.533 38.462 15.03 7.82 0.00 2.97
423 424 6.149308 ACGACTTGATCATGAAACAAATAGCA 59.851 34.615 15.03 0.00 0.00 3.49
424 425 7.148188 ACGACTTGATCATGAAACAAATAGCAT 60.148 33.333 15.03 0.00 0.00 3.79
425 426 7.699391 CGACTTGATCATGAAACAAATAGCATT 59.301 33.333 15.03 0.00 0.00 3.56
426 427 8.697846 ACTTGATCATGAAACAAATAGCATTG 57.302 30.769 15.03 7.59 36.37 2.82
427 428 7.762615 ACTTGATCATGAAACAAATAGCATTGG 59.237 33.333 15.03 7.09 34.56 3.16
428 429 7.407393 TGATCATGAAACAAATAGCATTGGA 57.593 32.000 0.00 0.00 34.56 3.53
429 430 7.485810 TGATCATGAAACAAATAGCATTGGAG 58.514 34.615 0.00 0.00 34.56 3.86
430 431 5.653507 TCATGAAACAAATAGCATTGGAGC 58.346 37.500 0.00 0.00 34.56 4.70
432 433 5.726980 TGAAACAAATAGCATTGGAGCTT 57.273 34.783 0.00 0.00 43.70 3.74
433 434 6.100404 TGAAACAAATAGCATTGGAGCTTT 57.900 33.333 0.00 0.00 43.70 3.51
434 435 7.225784 TGAAACAAATAGCATTGGAGCTTTA 57.774 32.000 0.00 0.00 43.70 1.85
435 436 7.665690 TGAAACAAATAGCATTGGAGCTTTAA 58.334 30.769 0.00 0.00 43.70 1.52
436 437 8.147058 TGAAACAAATAGCATTGGAGCTTTAAA 58.853 29.630 0.00 0.00 43.70 1.52
437 438 9.154847 GAAACAAATAGCATTGGAGCTTTAAAT 57.845 29.630 0.00 0.00 43.70 1.40
438 439 8.483307 AACAAATAGCATTGGAGCTTTAAATG 57.517 30.769 10.85 10.85 43.70 2.32
439 440 7.839907 ACAAATAGCATTGGAGCTTTAAATGA 58.160 30.769 16.67 2.54 43.70 2.57
440 441 7.761249 ACAAATAGCATTGGAGCTTTAAATGAC 59.239 33.333 16.67 10.17 43.70 3.06
441 442 4.725790 AGCATTGGAGCTTTAAATGACC 57.274 40.909 16.67 0.00 43.70 4.02
442 443 4.088634 AGCATTGGAGCTTTAAATGACCA 58.911 39.130 16.67 2.37 43.70 4.02
443 444 4.713321 AGCATTGGAGCTTTAAATGACCAT 59.287 37.500 16.67 0.00 43.70 3.55
444 445 4.807304 GCATTGGAGCTTTAAATGACCATG 59.193 41.667 16.67 6.54 33.96 3.66
445 446 5.625197 GCATTGGAGCTTTAAATGACCATGT 60.625 40.000 16.67 0.00 33.96 3.21
446 447 6.400568 CATTGGAGCTTTAAATGACCATGTT 58.599 36.000 10.01 0.00 33.96 2.71
447 448 5.643379 TGGAGCTTTAAATGACCATGTTC 57.357 39.130 0.00 0.00 0.00 3.18
448 449 5.076182 TGGAGCTTTAAATGACCATGTTCA 58.924 37.500 0.00 0.00 0.00 3.18
449 450 5.716228 TGGAGCTTTAAATGACCATGTTCAT 59.284 36.000 0.00 0.00 37.87 2.57
450 451 6.211184 TGGAGCTTTAAATGACCATGTTCATT 59.789 34.615 12.32 12.32 46.18 2.57
451 452 6.532657 GGAGCTTTAAATGACCATGTTCATTG 59.467 38.462 18.01 7.74 43.95 2.82
452 453 5.870978 AGCTTTAAATGACCATGTTCATTGC 59.129 36.000 18.01 15.96 43.95 3.56
453 454 5.638657 GCTTTAAATGACCATGTTCATTGCA 59.361 36.000 18.01 7.65 43.95 4.08
454 455 6.314400 GCTTTAAATGACCATGTTCATTGCAT 59.686 34.615 18.01 6.57 43.95 3.96
455 456 7.492020 GCTTTAAATGACCATGTTCATTGCATA 59.508 33.333 18.01 5.66 43.95 3.14
456 457 8.929827 TTTAAATGACCATGTTCATTGCATAG 57.070 30.769 18.01 0.00 43.95 2.23
457 458 6.534475 AAATGACCATGTTCATTGCATAGT 57.466 33.333 18.01 0.01 43.95 2.12
458 459 6.534475 AATGACCATGTTCATTGCATAGTT 57.466 33.333 16.77 0.00 43.25 2.24
459 460 5.565592 TGACCATGTTCATTGCATAGTTC 57.434 39.130 0.00 0.00 0.00 3.01
460 461 5.008980 TGACCATGTTCATTGCATAGTTCA 58.991 37.500 0.00 0.00 0.00 3.18
461 462 5.106197 TGACCATGTTCATTGCATAGTTCAC 60.106 40.000 0.00 0.00 0.00 3.18
462 463 4.766373 ACCATGTTCATTGCATAGTTCACA 59.234 37.500 0.00 0.00 0.00 3.58
463 464 5.243507 ACCATGTTCATTGCATAGTTCACAA 59.756 36.000 0.00 0.00 0.00 3.33
464 465 5.803461 CCATGTTCATTGCATAGTTCACAAG 59.197 40.000 0.00 0.00 0.00 3.16
465 466 5.375417 TGTTCATTGCATAGTTCACAAGG 57.625 39.130 0.00 0.00 0.00 3.61
466 467 5.069318 TGTTCATTGCATAGTTCACAAGGA 58.931 37.500 0.00 0.00 32.82 3.36
467 468 5.181811 TGTTCATTGCATAGTTCACAAGGAG 59.818 40.000 0.00 0.00 35.76 3.69
468 469 3.691118 TCATTGCATAGTTCACAAGGAGC 59.309 43.478 0.00 0.00 31.27 4.70
469 470 1.725641 TGCATAGTTCACAAGGAGCG 58.274 50.000 0.00 0.00 0.00 5.03
470 471 0.375106 GCATAGTTCACAAGGAGCGC 59.625 55.000 0.00 0.00 0.00 5.92
471 472 1.725641 CATAGTTCACAAGGAGCGCA 58.274 50.000 11.47 0.00 0.00 6.09
472 473 2.076100 CATAGTTCACAAGGAGCGCAA 58.924 47.619 11.47 0.00 0.00 4.85
473 474 2.248280 TAGTTCACAAGGAGCGCAAA 57.752 45.000 11.47 0.00 0.00 3.68
474 475 1.388547 AGTTCACAAGGAGCGCAAAA 58.611 45.000 11.47 0.00 0.00 2.44
475 476 1.748493 AGTTCACAAGGAGCGCAAAAA 59.252 42.857 11.47 0.00 0.00 1.94
499 500 9.932207 AAAATATTGAATCTTTCAGCACATTCA 57.068 25.926 0.00 0.00 41.38 2.57
501 502 9.745880 AATATTGAATCTTTCAGCACATTCATC 57.254 29.630 0.00 0.00 41.38 2.92
502 503 6.829229 TTGAATCTTTCAGCACATTCATCT 57.171 33.333 0.00 0.00 41.38 2.90
503 504 7.926674 TTGAATCTTTCAGCACATTCATCTA 57.073 32.000 0.00 0.00 41.38 1.98
504 505 7.549615 TGAATCTTTCAGCACATTCATCTAG 57.450 36.000 0.00 0.00 34.08 2.43
505 506 6.037940 TGAATCTTTCAGCACATTCATCTAGC 59.962 38.462 0.00 0.00 34.08 3.42
506 507 5.095145 TCTTTCAGCACATTCATCTAGCT 57.905 39.130 0.00 0.00 35.63 3.32
507 508 5.114780 TCTTTCAGCACATTCATCTAGCTC 58.885 41.667 0.00 0.00 32.35 4.09
508 509 4.750021 TTCAGCACATTCATCTAGCTCT 57.250 40.909 0.00 0.00 32.35 4.09
509 510 4.750021 TCAGCACATTCATCTAGCTCTT 57.250 40.909 0.00 0.00 32.35 2.85
510 511 4.691175 TCAGCACATTCATCTAGCTCTTC 58.309 43.478 0.00 0.00 32.35 2.87
511 512 4.405036 TCAGCACATTCATCTAGCTCTTCT 59.595 41.667 0.00 0.00 32.35 2.85
512 513 5.105023 TCAGCACATTCATCTAGCTCTTCTT 60.105 40.000 0.00 0.00 32.35 2.52
513 514 5.006844 CAGCACATTCATCTAGCTCTTCTTG 59.993 44.000 0.00 0.00 32.35 3.02
514 515 4.260702 GCACATTCATCTAGCTCTTCTTGC 60.261 45.833 0.00 0.00 0.00 4.01
515 516 4.874396 CACATTCATCTAGCTCTTCTTGCA 59.126 41.667 0.00 0.00 0.00 4.08
516 517 5.353400 CACATTCATCTAGCTCTTCTTGCAA 59.647 40.000 0.00 0.00 0.00 4.08
517 518 5.353678 ACATTCATCTAGCTCTTCTTGCAAC 59.646 40.000 0.00 0.00 0.00 4.17
518 519 4.541973 TCATCTAGCTCTTCTTGCAACA 57.458 40.909 0.00 0.00 0.00 3.33
519 520 4.898320 TCATCTAGCTCTTCTTGCAACAA 58.102 39.130 0.00 0.00 0.00 2.83
520 521 5.494724 TCATCTAGCTCTTCTTGCAACAAT 58.505 37.500 0.00 0.00 0.00 2.71
521 522 5.942236 TCATCTAGCTCTTCTTGCAACAATT 59.058 36.000 0.00 0.00 0.00 2.32
522 523 6.432162 TCATCTAGCTCTTCTTGCAACAATTT 59.568 34.615 0.00 0.00 0.00 1.82
523 524 6.005583 TCTAGCTCTTCTTGCAACAATTTG 57.994 37.500 0.00 0.00 35.62 2.32
524 525 3.986277 AGCTCTTCTTGCAACAATTTGG 58.014 40.909 0.00 0.00 32.81 3.28
525 526 3.385755 AGCTCTTCTTGCAACAATTTGGT 59.614 39.130 0.00 0.00 32.81 3.67
526 527 4.122046 GCTCTTCTTGCAACAATTTGGTT 58.878 39.130 0.00 0.00 32.81 3.67
527 528 4.571984 GCTCTTCTTGCAACAATTTGGTTT 59.428 37.500 0.00 0.00 32.81 3.27
528 529 5.277011 GCTCTTCTTGCAACAATTTGGTTTC 60.277 40.000 0.00 0.00 32.81 2.78
529 530 5.976458 TCTTCTTGCAACAATTTGGTTTCT 58.024 33.333 0.00 0.00 32.81 2.52
530 531 7.106439 TCTTCTTGCAACAATTTGGTTTCTA 57.894 32.000 0.00 0.00 32.81 2.10
531 532 7.551585 TCTTCTTGCAACAATTTGGTTTCTAA 58.448 30.769 0.00 0.00 32.81 2.10
532 533 7.706179 TCTTCTTGCAACAATTTGGTTTCTAAG 59.294 33.333 0.00 0.00 32.81 2.18
533 534 6.872920 TCTTGCAACAATTTGGTTTCTAAGT 58.127 32.000 0.00 0.00 32.81 2.24
534 535 8.001881 TCTTGCAACAATTTGGTTTCTAAGTA 57.998 30.769 0.00 0.00 32.81 2.24
535 536 7.918562 TCTTGCAACAATTTGGTTTCTAAGTAC 59.081 33.333 0.00 0.00 32.81 2.73
626 627 1.351017 CTCAGTTTTGCCCCTAGTCCA 59.649 52.381 0.00 0.00 0.00 4.02
663 664 2.565391 TCTATGAACTTTGGCGTCTCCA 59.435 45.455 0.00 0.00 44.85 3.86
1048 1068 4.212913 GGATGCAGAGCCGAGCGA 62.213 66.667 0.00 0.00 0.00 4.93
1148 1169 0.877071 ATCGTCCGTTCTACGTGTGT 59.123 50.000 0.00 0.00 40.58 3.72
1309 1331 2.854963 TGAACTGCAAGAAGAGCATGT 58.145 42.857 0.00 0.00 41.82 3.21
1850 1939 7.656948 TCAAAGACCAAAATGTCATGGAAAATC 59.343 33.333 0.00 0.00 39.12 2.17
2078 2171 3.256704 AGTTTGACATGGGTAGGGAAGA 58.743 45.455 0.00 0.00 0.00 2.87
2198 2298 1.569548 TGGGTTTGTGGTGTTTAGGGA 59.430 47.619 0.00 0.00 0.00 4.20
2235 2335 4.383118 GCTAGGACAGATGGCAAGAGTTTA 60.383 45.833 0.00 0.00 0.00 2.01
2347 2451 5.046950 AGTGGTTTTCCTTTGTTTTGCACTA 60.047 36.000 0.00 0.00 41.38 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.350504 TCAATAAGGAGCTCAAAGAGGAG 57.649 43.478 17.19 0.00 37.97 3.69
112 113 9.843704 TCTCCTCCTATTATTTCCTATGATGAA 57.156 33.333 0.00 0.00 0.00 2.57
116 117 9.051259 CCAATCTCCTCCTATTATTTCCTATGA 57.949 37.037 0.00 0.00 0.00 2.15
117 118 8.270744 CCCAATCTCCTCCTATTATTTCCTATG 58.729 40.741 0.00 0.00 0.00 2.23
118 119 8.193874 TCCCAATCTCCTCCTATTATTTCCTAT 58.806 37.037 0.00 0.00 0.00 2.57
119 120 7.553655 TCCCAATCTCCTCCTATTATTTCCTA 58.446 38.462 0.00 0.00 0.00 2.94
120 121 6.402442 TCCCAATCTCCTCCTATTATTTCCT 58.598 40.000 0.00 0.00 0.00 3.36
121 122 6.704056 TCCCAATCTCCTCCTATTATTTCC 57.296 41.667 0.00 0.00 0.00 3.13
122 123 6.657117 GCTTCCCAATCTCCTCCTATTATTTC 59.343 42.308 0.00 0.00 0.00 2.17
123 124 6.467921 GGCTTCCCAATCTCCTCCTATTATTT 60.468 42.308 0.00 0.00 0.00 1.40
124 125 5.014649 GGCTTCCCAATCTCCTCCTATTATT 59.985 44.000 0.00 0.00 0.00 1.40
125 126 4.538089 GGCTTCCCAATCTCCTCCTATTAT 59.462 45.833 0.00 0.00 0.00 1.28
126 127 3.910627 GGCTTCCCAATCTCCTCCTATTA 59.089 47.826 0.00 0.00 0.00 0.98
127 128 2.713708 GGCTTCCCAATCTCCTCCTATT 59.286 50.000 0.00 0.00 0.00 1.73
128 129 2.089696 AGGCTTCCCAATCTCCTCCTAT 60.090 50.000 0.00 0.00 0.00 2.57
129 130 1.295292 AGGCTTCCCAATCTCCTCCTA 59.705 52.381 0.00 0.00 0.00 2.94
130 131 0.045469 AGGCTTCCCAATCTCCTCCT 59.955 55.000 0.00 0.00 0.00 3.69
131 132 0.472044 GAGGCTTCCCAATCTCCTCC 59.528 60.000 0.00 0.00 37.85 4.30
132 133 1.506025 AGAGGCTTCCCAATCTCCTC 58.494 55.000 0.00 0.00 42.68 3.71
133 134 1.843206 GAAGAGGCTTCCCAATCTCCT 59.157 52.381 0.00 0.00 0.00 3.69
134 135 1.133945 GGAAGAGGCTTCCCAATCTCC 60.134 57.143 13.91 0.00 32.48 3.71
135 136 2.340210 GGAAGAGGCTTCCCAATCTC 57.660 55.000 13.91 0.00 32.48 2.75
142 143 2.816777 ATGAAAGGGAAGAGGCTTCC 57.183 50.000 16.04 16.04 37.86 3.46
143 144 4.849518 ACTAATGAAAGGGAAGAGGCTTC 58.150 43.478 0.00 0.00 0.00 3.86
144 145 4.936685 ACTAATGAAAGGGAAGAGGCTT 57.063 40.909 0.00 0.00 0.00 4.35
145 146 6.388394 AGAATACTAATGAAAGGGAAGAGGCT 59.612 38.462 0.00 0.00 0.00 4.58
146 147 6.596621 AGAATACTAATGAAAGGGAAGAGGC 58.403 40.000 0.00 0.00 0.00 4.70
147 148 7.796054 TGAGAATACTAATGAAAGGGAAGAGG 58.204 38.462 0.00 0.00 0.00 3.69
148 149 9.487790 GATGAGAATACTAATGAAAGGGAAGAG 57.512 37.037 0.00 0.00 0.00 2.85
149 150 8.992349 TGATGAGAATACTAATGAAAGGGAAGA 58.008 33.333 0.00 0.00 0.00 2.87
150 151 9.790344 ATGATGAGAATACTAATGAAAGGGAAG 57.210 33.333 0.00 0.00 0.00 3.46
151 152 9.784531 GATGATGAGAATACTAATGAAAGGGAA 57.215 33.333 0.00 0.00 0.00 3.97
152 153 9.163894 AGATGATGAGAATACTAATGAAAGGGA 57.836 33.333 0.00 0.00 0.00 4.20
153 154 9.790344 AAGATGATGAGAATACTAATGAAAGGG 57.210 33.333 0.00 0.00 0.00 3.95
161 162 9.060347 GCAAATGGAAGATGATGAGAATACTAA 57.940 33.333 0.00 0.00 0.00 2.24
162 163 8.435187 AGCAAATGGAAGATGATGAGAATACTA 58.565 33.333 0.00 0.00 0.00 1.82
163 164 7.288560 AGCAAATGGAAGATGATGAGAATACT 58.711 34.615 0.00 0.00 0.00 2.12
164 165 7.507733 AGCAAATGGAAGATGATGAGAATAC 57.492 36.000 0.00 0.00 0.00 1.89
165 166 8.529424 AAAGCAAATGGAAGATGATGAGAATA 57.471 30.769 0.00 0.00 0.00 1.75
166 167 7.342284 AGAAAGCAAATGGAAGATGATGAGAAT 59.658 33.333 0.00 0.00 0.00 2.40
167 168 6.662234 AGAAAGCAAATGGAAGATGATGAGAA 59.338 34.615 0.00 0.00 0.00 2.87
168 169 6.185511 AGAAAGCAAATGGAAGATGATGAGA 58.814 36.000 0.00 0.00 0.00 3.27
169 170 6.452494 AGAAAGCAAATGGAAGATGATGAG 57.548 37.500 0.00 0.00 0.00 2.90
170 171 6.845758 AAGAAAGCAAATGGAAGATGATGA 57.154 33.333 0.00 0.00 0.00 2.92
171 172 7.817962 AGAAAAGAAAGCAAATGGAAGATGATG 59.182 33.333 0.00 0.00 0.00 3.07
172 173 7.904205 AGAAAAGAAAGCAAATGGAAGATGAT 58.096 30.769 0.00 0.00 0.00 2.45
173 174 7.294017 AGAAAAGAAAGCAAATGGAAGATGA 57.706 32.000 0.00 0.00 0.00 2.92
174 175 7.958053 AAGAAAAGAAAGCAAATGGAAGATG 57.042 32.000 0.00 0.00 0.00 2.90
175 176 9.702494 CTAAAGAAAAGAAAGCAAATGGAAGAT 57.298 29.630 0.00 0.00 0.00 2.40
176 177 8.143835 CCTAAAGAAAAGAAAGCAAATGGAAGA 58.856 33.333 0.00 0.00 0.00 2.87
177 178 7.928167 ACCTAAAGAAAAGAAAGCAAATGGAAG 59.072 33.333 0.00 0.00 0.00 3.46
178 179 7.791029 ACCTAAAGAAAAGAAAGCAAATGGAA 58.209 30.769 0.00 0.00 0.00 3.53
179 180 7.360113 ACCTAAAGAAAAGAAAGCAAATGGA 57.640 32.000 0.00 0.00 0.00 3.41
180 181 9.710900 ATTACCTAAAGAAAAGAAAGCAAATGG 57.289 29.630 0.00 0.00 0.00 3.16
183 184 9.541143 CCAATTACCTAAAGAAAAGAAAGCAAA 57.459 29.630 0.00 0.00 0.00 3.68
184 185 7.655732 GCCAATTACCTAAAGAAAAGAAAGCAA 59.344 33.333 0.00 0.00 0.00 3.91
185 186 7.151976 GCCAATTACCTAAAGAAAAGAAAGCA 58.848 34.615 0.00 0.00 0.00 3.91
186 187 7.151976 TGCCAATTACCTAAAGAAAAGAAAGC 58.848 34.615 0.00 0.00 0.00 3.51
187 188 9.710900 ATTGCCAATTACCTAAAGAAAAGAAAG 57.289 29.630 0.00 0.00 0.00 2.62
200 201 9.432982 TGAAAATCCTTATATTGCCAATTACCT 57.567 29.630 0.00 0.00 0.00 3.08
201 202 9.476202 GTGAAAATCCTTATATTGCCAATTACC 57.524 33.333 0.00 0.00 0.00 2.85
204 205 7.712205 GCAGTGAAAATCCTTATATTGCCAATT 59.288 33.333 0.00 0.00 0.00 2.32
205 206 7.147689 TGCAGTGAAAATCCTTATATTGCCAAT 60.148 33.333 0.00 0.00 0.00 3.16
206 207 6.154192 TGCAGTGAAAATCCTTATATTGCCAA 59.846 34.615 0.00 0.00 0.00 4.52
207 208 5.655974 TGCAGTGAAAATCCTTATATTGCCA 59.344 36.000 0.00 0.00 0.00 4.92
208 209 6.147864 TGCAGTGAAAATCCTTATATTGCC 57.852 37.500 0.00 0.00 0.00 4.52
209 210 8.652810 AATTGCAGTGAAAATCCTTATATTGC 57.347 30.769 0.00 0.00 0.00 3.56
210 211 9.806203 TGAATTGCAGTGAAAATCCTTATATTG 57.194 29.630 0.00 0.00 0.00 1.90
211 212 9.807649 GTGAATTGCAGTGAAAATCCTTATATT 57.192 29.630 0.00 0.00 0.00 1.28
212 213 8.416329 GGTGAATTGCAGTGAAAATCCTTATAT 58.584 33.333 0.00 0.00 0.00 0.86
213 214 7.415095 CGGTGAATTGCAGTGAAAATCCTTATA 60.415 37.037 0.00 0.00 0.00 0.98
214 215 6.625740 CGGTGAATTGCAGTGAAAATCCTTAT 60.626 38.462 0.00 0.00 0.00 1.73
215 216 5.335583 CGGTGAATTGCAGTGAAAATCCTTA 60.336 40.000 0.00 0.00 0.00 2.69
216 217 4.559300 CGGTGAATTGCAGTGAAAATCCTT 60.559 41.667 0.00 0.00 0.00 3.36
217 218 3.057315 CGGTGAATTGCAGTGAAAATCCT 60.057 43.478 0.00 0.00 0.00 3.24
218 219 3.244976 CGGTGAATTGCAGTGAAAATCC 58.755 45.455 0.00 0.00 0.00 3.01
219 220 2.663119 GCGGTGAATTGCAGTGAAAATC 59.337 45.455 0.00 0.00 0.00 2.17
220 221 2.035704 TGCGGTGAATTGCAGTGAAAAT 59.964 40.909 0.00 0.00 35.90 1.82
221 222 1.406898 TGCGGTGAATTGCAGTGAAAA 59.593 42.857 0.00 0.00 35.90 2.29
222 223 1.028130 TGCGGTGAATTGCAGTGAAA 58.972 45.000 0.00 0.00 35.90 2.69
223 224 0.310543 GTGCGGTGAATTGCAGTGAA 59.689 50.000 0.00 0.00 42.68 3.18
224 225 0.817229 TGTGCGGTGAATTGCAGTGA 60.817 50.000 0.00 0.00 42.68 3.41
225 226 0.030504 TTGTGCGGTGAATTGCAGTG 59.969 50.000 0.00 0.00 42.68 3.66
226 227 0.961019 ATTGTGCGGTGAATTGCAGT 59.039 45.000 0.00 0.00 42.68 4.40
227 228 2.095314 TGTATTGTGCGGTGAATTGCAG 60.095 45.455 0.00 0.00 42.68 4.41
228 229 1.882623 TGTATTGTGCGGTGAATTGCA 59.117 42.857 0.00 0.00 39.13 4.08
229 230 2.627863 TGTATTGTGCGGTGAATTGC 57.372 45.000 0.00 0.00 0.00 3.56
230 231 9.117145 GATTTATATGTATTGTGCGGTGAATTG 57.883 33.333 0.00 0.00 0.00 2.32
231 232 9.066892 AGATTTATATGTATTGTGCGGTGAATT 57.933 29.630 0.00 0.00 0.00 2.17
232 233 8.621532 AGATTTATATGTATTGTGCGGTGAAT 57.378 30.769 0.00 0.00 0.00 2.57
233 234 8.445275 AAGATTTATATGTATTGTGCGGTGAA 57.555 30.769 0.00 0.00 0.00 3.18
234 235 7.931407 AGAAGATTTATATGTATTGTGCGGTGA 59.069 33.333 0.00 0.00 0.00 4.02
235 236 8.087982 AGAAGATTTATATGTATTGTGCGGTG 57.912 34.615 0.00 0.00 0.00 4.94
236 237 8.150945 AGAGAAGATTTATATGTATTGTGCGGT 58.849 33.333 0.00 0.00 0.00 5.68
237 238 8.539770 AGAGAAGATTTATATGTATTGTGCGG 57.460 34.615 0.00 0.00 0.00 5.69
257 258 9.964354 TGGATTTCTTGATTTTGATCTAGAGAA 57.036 29.630 0.00 0.00 34.81 2.87
293 294 9.416284 ACGTATAAATGAGGGTATTCCAAAATT 57.584 29.630 0.00 0.00 38.24 1.82
294 295 8.990163 ACGTATAAATGAGGGTATTCCAAAAT 57.010 30.769 0.00 0.00 38.24 1.82
295 296 8.810990 AACGTATAAATGAGGGTATTCCAAAA 57.189 30.769 0.00 0.00 38.24 2.44
296 297 8.810990 AAACGTATAAATGAGGGTATTCCAAA 57.189 30.769 0.00 0.00 38.24 3.28
297 298 8.047911 TGAAACGTATAAATGAGGGTATTCCAA 58.952 33.333 0.00 0.00 38.24 3.53
298 299 7.566569 TGAAACGTATAAATGAGGGTATTCCA 58.433 34.615 0.00 0.00 38.24 3.53
299 300 8.617290 ATGAAACGTATAAATGAGGGTATTCC 57.383 34.615 0.00 0.00 0.00 3.01
302 303 9.847224 AGAAATGAAACGTATAAATGAGGGTAT 57.153 29.630 0.00 0.00 0.00 2.73
303 304 9.675464 AAGAAATGAAACGTATAAATGAGGGTA 57.325 29.630 0.00 0.00 0.00 3.69
304 305 8.575649 AAGAAATGAAACGTATAAATGAGGGT 57.424 30.769 0.00 0.00 0.00 4.34
305 306 8.673711 TGAAGAAATGAAACGTATAAATGAGGG 58.326 33.333 0.00 0.00 0.00 4.30
312 313 9.451002 TGGGTTATGAAGAAATGAAACGTATAA 57.549 29.630 0.00 0.00 0.00 0.98
313 314 9.451002 TTGGGTTATGAAGAAATGAAACGTATA 57.549 29.630 0.00 0.00 0.00 1.47
314 315 7.931578 TGGGTTATGAAGAAATGAAACGTAT 57.068 32.000 0.00 0.00 0.00 3.06
315 316 7.747155 TTGGGTTATGAAGAAATGAAACGTA 57.253 32.000 0.00 0.00 0.00 3.57
316 317 6.642707 TTGGGTTATGAAGAAATGAAACGT 57.357 33.333 0.00 0.00 0.00 3.99
317 318 7.865385 TCTTTTGGGTTATGAAGAAATGAAACG 59.135 33.333 0.00 0.00 0.00 3.60
318 319 9.541143 TTCTTTTGGGTTATGAAGAAATGAAAC 57.459 29.630 0.00 0.00 35.76 2.78
319 320 9.762933 CTTCTTTTGGGTTATGAAGAAATGAAA 57.237 29.630 0.00 0.00 37.58 2.69
320 321 8.367156 CCTTCTTTTGGGTTATGAAGAAATGAA 58.633 33.333 0.00 0.00 37.58 2.57
321 322 7.525360 GCCTTCTTTTGGGTTATGAAGAAATGA 60.525 37.037 0.00 0.00 37.58 2.57
322 323 6.591448 GCCTTCTTTTGGGTTATGAAGAAATG 59.409 38.462 0.00 0.00 37.58 2.32
323 324 6.498303 AGCCTTCTTTTGGGTTATGAAGAAAT 59.502 34.615 0.00 0.00 37.58 2.17
324 325 5.838521 AGCCTTCTTTTGGGTTATGAAGAAA 59.161 36.000 0.00 0.00 37.58 2.52
325 326 5.393866 AGCCTTCTTTTGGGTTATGAAGAA 58.606 37.500 0.00 0.00 37.03 2.52
326 327 4.998051 AGCCTTCTTTTGGGTTATGAAGA 58.002 39.130 0.00 0.00 37.03 2.87
327 328 6.625960 GCTTAGCCTTCTTTTGGGTTATGAAG 60.626 42.308 0.00 0.00 36.60 3.02
328 329 5.185056 GCTTAGCCTTCTTTTGGGTTATGAA 59.815 40.000 0.00 0.00 36.60 2.57
329 330 4.705023 GCTTAGCCTTCTTTTGGGTTATGA 59.295 41.667 0.00 0.00 36.60 2.15
330 331 4.706962 AGCTTAGCCTTCTTTTGGGTTATG 59.293 41.667 0.00 0.00 36.60 1.90
331 332 4.935578 AGCTTAGCCTTCTTTTGGGTTAT 58.064 39.130 0.00 0.00 36.60 1.89
332 333 4.042934 AGAGCTTAGCCTTCTTTTGGGTTA 59.957 41.667 0.00 0.00 36.60 2.85
333 334 3.157881 GAGCTTAGCCTTCTTTTGGGTT 58.842 45.455 0.00 0.00 36.60 4.11
334 335 2.376855 AGAGCTTAGCCTTCTTTTGGGT 59.623 45.455 0.00 0.00 38.91 4.51
335 336 3.078891 AGAGCTTAGCCTTCTTTTGGG 57.921 47.619 0.00 0.00 0.00 4.12
336 337 6.375455 TCATAAAGAGCTTAGCCTTCTTTTGG 59.625 38.462 20.98 15.14 40.53 3.28
337 338 7.383102 TCATAAAGAGCTTAGCCTTCTTTTG 57.617 36.000 20.98 17.96 40.53 2.44
338 339 7.416101 GCATCATAAAGAGCTTAGCCTTCTTTT 60.416 37.037 20.98 10.36 40.53 2.27
339 340 6.039159 GCATCATAAAGAGCTTAGCCTTCTTT 59.961 38.462 20.08 20.08 42.19 2.52
340 341 5.530543 GCATCATAAAGAGCTTAGCCTTCTT 59.469 40.000 0.00 1.39 32.80 2.52
341 342 5.062528 GCATCATAAAGAGCTTAGCCTTCT 58.937 41.667 0.00 0.00 0.00 2.85
342 343 5.062528 AGCATCATAAAGAGCTTAGCCTTC 58.937 41.667 0.00 0.00 32.52 3.46
343 344 5.046288 AGCATCATAAAGAGCTTAGCCTT 57.954 39.130 0.00 1.16 32.52 4.35
344 345 4.102210 TGAGCATCATAAAGAGCTTAGCCT 59.898 41.667 0.00 0.00 42.56 4.58
345 346 4.384056 TGAGCATCATAAAGAGCTTAGCC 58.616 43.478 0.00 0.00 42.56 3.93
360 361 8.078596 GTGATAATTTGATTACCCTTGAGCATC 58.921 37.037 0.00 0.00 0.00 3.91
361 362 7.560991 TGTGATAATTTGATTACCCTTGAGCAT 59.439 33.333 0.00 0.00 0.00 3.79
362 363 6.889177 TGTGATAATTTGATTACCCTTGAGCA 59.111 34.615 0.00 0.00 0.00 4.26
363 364 7.333528 TGTGATAATTTGATTACCCTTGAGC 57.666 36.000 0.00 0.00 0.00 4.26
374 375 9.734620 CGTGTCCAAATATTGTGATAATTTGAT 57.265 29.630 8.23 0.00 35.03 2.57
375 376 8.951243 TCGTGTCCAAATATTGTGATAATTTGA 58.049 29.630 8.23 0.00 35.03 2.69
376 377 9.009327 GTCGTGTCCAAATATTGTGATAATTTG 57.991 33.333 0.00 0.00 33.43 2.32
377 378 8.956426 AGTCGTGTCCAAATATTGTGATAATTT 58.044 29.630 0.00 0.00 0.00 1.82
378 379 8.506168 AGTCGTGTCCAAATATTGTGATAATT 57.494 30.769 0.00 0.00 0.00 1.40
379 380 8.397906 CAAGTCGTGTCCAAATATTGTGATAAT 58.602 33.333 0.00 0.00 0.00 1.28
380 381 7.604545 TCAAGTCGTGTCCAAATATTGTGATAA 59.395 33.333 0.00 0.00 0.00 1.75
381 382 7.100409 TCAAGTCGTGTCCAAATATTGTGATA 58.900 34.615 0.00 0.00 0.00 2.15
382 383 5.937540 TCAAGTCGTGTCCAAATATTGTGAT 59.062 36.000 0.00 0.00 0.00 3.06
383 384 5.301555 TCAAGTCGTGTCCAAATATTGTGA 58.698 37.500 0.00 0.00 0.00 3.58
384 385 5.605564 TCAAGTCGTGTCCAAATATTGTG 57.394 39.130 0.00 0.00 0.00 3.33
385 386 5.937540 TGATCAAGTCGTGTCCAAATATTGT 59.062 36.000 0.00 0.00 0.00 2.71
386 387 6.421377 TGATCAAGTCGTGTCCAAATATTG 57.579 37.500 0.00 0.00 0.00 1.90
387 388 6.823182 TCATGATCAAGTCGTGTCCAAATATT 59.177 34.615 0.00 0.00 43.12 1.28
388 389 6.348498 TCATGATCAAGTCGTGTCCAAATAT 58.652 36.000 0.00 0.00 43.12 1.28
389 390 5.729510 TCATGATCAAGTCGTGTCCAAATA 58.270 37.500 0.00 0.00 43.12 1.40
390 391 4.578871 TCATGATCAAGTCGTGTCCAAAT 58.421 39.130 0.00 0.00 43.12 2.32
391 392 4.001618 TCATGATCAAGTCGTGTCCAAA 57.998 40.909 0.00 0.00 43.12 3.28
392 393 3.676291 TCATGATCAAGTCGTGTCCAA 57.324 42.857 0.00 0.00 43.12 3.53
393 394 3.676291 TTCATGATCAAGTCGTGTCCA 57.324 42.857 0.00 0.00 43.12 4.02
394 395 3.745975 TGTTTCATGATCAAGTCGTGTCC 59.254 43.478 0.00 0.00 43.12 4.02
395 396 4.990543 TGTTTCATGATCAAGTCGTGTC 57.009 40.909 0.00 0.00 43.12 3.67
396 397 5.749596 TTTGTTTCATGATCAAGTCGTGT 57.250 34.783 0.00 0.00 43.12 4.49
397 398 6.467047 GCTATTTGTTTCATGATCAAGTCGTG 59.533 38.462 0.00 0.00 43.82 4.35
398 399 6.149308 TGCTATTTGTTTCATGATCAAGTCGT 59.851 34.615 0.00 0.00 0.00 4.34
399 400 6.545508 TGCTATTTGTTTCATGATCAAGTCG 58.454 36.000 0.00 0.83 0.00 4.18
400 401 8.804743 CAATGCTATTTGTTTCATGATCAAGTC 58.195 33.333 0.00 0.00 0.00 3.01
401 402 7.762615 CCAATGCTATTTGTTTCATGATCAAGT 59.237 33.333 0.00 5.44 0.00 3.16
402 403 7.977293 TCCAATGCTATTTGTTTCATGATCAAG 59.023 33.333 0.00 0.00 0.00 3.02
403 404 7.838884 TCCAATGCTATTTGTTTCATGATCAA 58.161 30.769 0.00 2.96 0.00 2.57
404 405 7.407393 TCCAATGCTATTTGTTTCATGATCA 57.593 32.000 0.00 0.00 0.00 2.92
405 406 6.420008 GCTCCAATGCTATTTGTTTCATGATC 59.580 38.462 0.00 0.00 0.00 2.92
406 407 6.097839 AGCTCCAATGCTATTTGTTTCATGAT 59.902 34.615 0.00 0.00 42.10 2.45
407 408 5.419788 AGCTCCAATGCTATTTGTTTCATGA 59.580 36.000 0.00 0.00 42.10 3.07
408 409 5.657474 AGCTCCAATGCTATTTGTTTCATG 58.343 37.500 0.00 0.00 42.10 3.07
409 410 5.927281 AGCTCCAATGCTATTTGTTTCAT 57.073 34.783 0.00 0.00 42.10 2.57
410 411 5.726980 AAGCTCCAATGCTATTTGTTTCA 57.273 34.783 0.00 0.00 43.24 2.69
411 412 8.532977 TTTAAAGCTCCAATGCTATTTGTTTC 57.467 30.769 0.00 0.00 43.24 2.78
412 413 8.938906 CATTTAAAGCTCCAATGCTATTTGTTT 58.061 29.630 0.00 0.00 43.24 2.83
413 414 8.313292 TCATTTAAAGCTCCAATGCTATTTGTT 58.687 29.630 7.34 0.00 43.24 2.83
414 415 7.761249 GTCATTTAAAGCTCCAATGCTATTTGT 59.239 33.333 7.34 0.00 43.24 2.83
415 416 7.223387 GGTCATTTAAAGCTCCAATGCTATTTG 59.777 37.037 7.34 0.00 43.24 2.32
416 417 7.093377 TGGTCATTTAAAGCTCCAATGCTATTT 60.093 33.333 7.34 0.00 43.24 1.40
417 418 6.380846 TGGTCATTTAAAGCTCCAATGCTATT 59.619 34.615 7.34 0.00 43.24 1.73
418 419 5.893255 TGGTCATTTAAAGCTCCAATGCTAT 59.107 36.000 7.34 0.00 43.24 2.97
419 420 5.260424 TGGTCATTTAAAGCTCCAATGCTA 58.740 37.500 7.34 0.88 43.24 3.49
420 421 4.088634 TGGTCATTTAAAGCTCCAATGCT 58.911 39.130 7.34 0.00 46.40 3.79
421 422 4.454728 TGGTCATTTAAAGCTCCAATGC 57.545 40.909 7.34 4.18 0.00 3.56
422 423 5.969423 ACATGGTCATTTAAAGCTCCAATG 58.031 37.500 10.54 6.25 0.00 2.82
423 424 6.211184 TGAACATGGTCATTTAAAGCTCCAAT 59.789 34.615 10.05 2.69 0.00 3.16
424 425 5.538053 TGAACATGGTCATTTAAAGCTCCAA 59.462 36.000 10.05 0.00 0.00 3.53
425 426 5.076182 TGAACATGGTCATTTAAAGCTCCA 58.924 37.500 10.05 9.39 0.00 3.86
426 427 5.643379 TGAACATGGTCATTTAAAGCTCC 57.357 39.130 10.05 0.00 0.00 4.70
427 428 6.035327 GCAATGAACATGGTCATTTAAAGCTC 59.965 38.462 31.76 13.63 44.09 4.09
428 429 5.870978 GCAATGAACATGGTCATTTAAAGCT 59.129 36.000 31.76 10.83 44.09 3.74
429 430 5.638657 TGCAATGAACATGGTCATTTAAAGC 59.361 36.000 31.76 29.22 44.09 3.51
430 431 7.837202 ATGCAATGAACATGGTCATTTAAAG 57.163 32.000 31.76 22.32 44.09 1.85
431 432 8.530311 ACTATGCAATGAACATGGTCATTTAAA 58.470 29.630 31.76 21.26 44.09 1.52
432 433 8.065473 ACTATGCAATGAACATGGTCATTTAA 57.935 30.769 31.76 23.44 44.09 1.52
433 434 7.643569 ACTATGCAATGAACATGGTCATTTA 57.356 32.000 31.76 24.10 44.09 1.40
434 435 6.534475 ACTATGCAATGAACATGGTCATTT 57.466 33.333 31.76 21.64 44.09 2.32
435 436 6.153170 TGAACTATGCAATGAACATGGTCATT 59.847 34.615 29.34 29.34 46.77 2.57
436 437 5.653330 TGAACTATGCAATGAACATGGTCAT 59.347 36.000 20.78 20.78 38.15 3.06
437 438 5.008980 TGAACTATGCAATGAACATGGTCA 58.991 37.500 17.41 17.41 38.15 4.02
438 439 5.106197 TGTGAACTATGCAATGAACATGGTC 60.106 40.000 2.98 2.98 38.15 4.02
439 440 4.766373 TGTGAACTATGCAATGAACATGGT 59.234 37.500 0.00 0.00 40.49 3.55
440 441 5.313520 TGTGAACTATGCAATGAACATGG 57.686 39.130 0.00 0.00 32.71 3.66
441 442 5.803461 CCTTGTGAACTATGCAATGAACATG 59.197 40.000 0.00 0.00 0.00 3.21
442 443 5.711506 TCCTTGTGAACTATGCAATGAACAT 59.288 36.000 0.00 0.00 0.00 2.71
443 444 5.069318 TCCTTGTGAACTATGCAATGAACA 58.931 37.500 0.00 0.00 0.00 3.18
444 445 5.627499 TCCTTGTGAACTATGCAATGAAC 57.373 39.130 0.00 0.00 0.00 3.18
445 446 4.156556 GCTCCTTGTGAACTATGCAATGAA 59.843 41.667 0.00 0.00 0.00 2.57
446 447 3.691118 GCTCCTTGTGAACTATGCAATGA 59.309 43.478 0.00 0.00 0.00 2.57
447 448 3.486375 CGCTCCTTGTGAACTATGCAATG 60.486 47.826 0.00 0.00 0.00 2.82
448 449 2.679837 CGCTCCTTGTGAACTATGCAAT 59.320 45.455 0.00 0.00 0.00 3.56
449 450 2.076100 CGCTCCTTGTGAACTATGCAA 58.924 47.619 0.00 0.00 0.00 4.08
450 451 1.725641 CGCTCCTTGTGAACTATGCA 58.274 50.000 0.00 0.00 0.00 3.96
451 452 0.375106 GCGCTCCTTGTGAACTATGC 59.625 55.000 0.00 0.00 0.00 3.14
452 453 1.725641 TGCGCTCCTTGTGAACTATG 58.274 50.000 9.73 0.00 0.00 2.23
453 454 2.472695 TTGCGCTCCTTGTGAACTAT 57.527 45.000 9.73 0.00 0.00 2.12
454 455 2.248280 TTTGCGCTCCTTGTGAACTA 57.752 45.000 9.73 0.00 0.00 2.24
455 456 1.388547 TTTTGCGCTCCTTGTGAACT 58.611 45.000 9.73 0.00 0.00 3.01
456 457 2.202295 TTTTTGCGCTCCTTGTGAAC 57.798 45.000 9.73 0.00 0.00 3.18
473 474 9.932207 TGAATGTGCTGAAAGATTCAATATTTT 57.068 25.926 0.00 0.00 39.58 1.82
475 476 9.745880 GATGAATGTGCTGAAAGATTCAATATT 57.254 29.630 0.00 0.00 37.94 1.28
476 477 9.132923 AGATGAATGTGCTGAAAGATTCAATAT 57.867 29.630 0.00 0.00 37.94 1.28
477 478 8.515695 AGATGAATGTGCTGAAAGATTCAATA 57.484 30.769 0.00 0.00 37.94 1.90
478 479 7.406031 AGATGAATGTGCTGAAAGATTCAAT 57.594 32.000 0.00 0.00 37.94 2.57
479 480 6.829229 AGATGAATGTGCTGAAAGATTCAA 57.171 33.333 0.00 0.00 37.94 2.69
480 481 6.037940 GCTAGATGAATGTGCTGAAAGATTCA 59.962 38.462 0.00 0.00 38.52 2.57
481 482 6.260493 AGCTAGATGAATGTGCTGAAAGATTC 59.740 38.462 0.00 0.00 34.07 2.52
482 483 6.120905 AGCTAGATGAATGTGCTGAAAGATT 58.879 36.000 0.00 0.00 34.07 2.40
483 484 5.682659 AGCTAGATGAATGTGCTGAAAGAT 58.317 37.500 0.00 0.00 34.07 2.40
484 485 5.095145 AGCTAGATGAATGTGCTGAAAGA 57.905 39.130 0.00 0.00 34.07 2.52
485 486 5.117584 AGAGCTAGATGAATGTGCTGAAAG 58.882 41.667 0.00 0.00 33.83 2.62
486 487 5.095145 AGAGCTAGATGAATGTGCTGAAA 57.905 39.130 0.00 0.00 33.83 2.69
487 488 4.750021 AGAGCTAGATGAATGTGCTGAA 57.250 40.909 0.00 0.00 33.83 3.02
488 489 4.405036 AGAAGAGCTAGATGAATGTGCTGA 59.595 41.667 0.00 0.00 33.83 4.26
489 490 4.695396 AGAAGAGCTAGATGAATGTGCTG 58.305 43.478 0.00 0.00 33.83 4.41
490 491 5.117584 CAAGAAGAGCTAGATGAATGTGCT 58.882 41.667 0.00 0.00 36.63 4.40
491 492 4.260702 GCAAGAAGAGCTAGATGAATGTGC 60.261 45.833 0.00 0.00 0.00 4.57
492 493 4.874396 TGCAAGAAGAGCTAGATGAATGTG 59.126 41.667 0.00 0.00 0.00 3.21
493 494 5.095145 TGCAAGAAGAGCTAGATGAATGT 57.905 39.130 0.00 0.00 0.00 2.71
494 495 5.353400 TGTTGCAAGAAGAGCTAGATGAATG 59.647 40.000 0.00 0.00 0.00 2.67
495 496 5.494724 TGTTGCAAGAAGAGCTAGATGAAT 58.505 37.500 0.00 0.00 0.00 2.57
496 497 4.898320 TGTTGCAAGAAGAGCTAGATGAA 58.102 39.130 0.00 0.00 0.00 2.57
497 498 4.541973 TGTTGCAAGAAGAGCTAGATGA 57.458 40.909 0.00 0.00 0.00 2.92
498 499 5.814764 ATTGTTGCAAGAAGAGCTAGATG 57.185 39.130 14.83 0.00 0.00 2.90
499 500 6.349944 CCAAATTGTTGCAAGAAGAGCTAGAT 60.350 38.462 14.83 0.00 33.01 1.98
500 501 5.048504 CCAAATTGTTGCAAGAAGAGCTAGA 60.049 40.000 14.83 0.00 33.01 2.43
501 502 5.159209 CCAAATTGTTGCAAGAAGAGCTAG 58.841 41.667 14.83 1.96 33.01 3.42
502 503 4.584325 ACCAAATTGTTGCAAGAAGAGCTA 59.416 37.500 14.83 0.00 33.01 3.32
503 504 3.385755 ACCAAATTGTTGCAAGAAGAGCT 59.614 39.130 14.83 0.00 33.01 4.09
504 505 3.721035 ACCAAATTGTTGCAAGAAGAGC 58.279 40.909 14.83 0.00 33.01 4.09
505 506 6.044682 AGAAACCAAATTGTTGCAAGAAGAG 58.955 36.000 14.83 6.79 33.01 2.85
506 507 5.976458 AGAAACCAAATTGTTGCAAGAAGA 58.024 33.333 14.83 0.00 33.01 2.87
507 508 7.492344 ACTTAGAAACCAAATTGTTGCAAGAAG 59.508 33.333 14.83 3.67 33.01 2.85
508 509 7.327214 ACTTAGAAACCAAATTGTTGCAAGAA 58.673 30.769 11.84 11.84 33.01 2.52
509 510 6.872920 ACTTAGAAACCAAATTGTTGCAAGA 58.127 32.000 0.00 0.00 33.01 3.02
510 511 7.920682 AGTACTTAGAAACCAAATTGTTGCAAG 59.079 33.333 0.00 0.00 33.01 4.01
511 512 7.777095 AGTACTTAGAAACCAAATTGTTGCAA 58.223 30.769 0.00 0.00 33.01 4.08
512 513 7.341445 AGTACTTAGAAACCAAATTGTTGCA 57.659 32.000 0.00 0.00 33.01 4.08
513 514 9.394477 CTAAGTACTTAGAAACCAAATTGTTGC 57.606 33.333 30.84 0.00 43.90 4.17
514 515 9.893305 CCTAAGTACTTAGAAACCAAATTGTTG 57.107 33.333 34.41 14.91 43.90 3.33
515 516 9.074576 CCCTAAGTACTTAGAAACCAAATTGTT 57.925 33.333 34.41 0.99 43.90 2.83
516 517 8.222637 ACCCTAAGTACTTAGAAACCAAATTGT 58.777 33.333 34.41 16.44 43.90 2.71
517 518 8.631480 ACCCTAAGTACTTAGAAACCAAATTG 57.369 34.615 34.41 18.14 43.90 2.32
531 532 9.404848 GCAAAAGGATAATTAACCCTAAGTACT 57.595 33.333 8.09 0.00 0.00 2.73
532 533 8.627403 GGCAAAAGGATAATTAACCCTAAGTAC 58.373 37.037 8.09 0.00 0.00 2.73
533 534 7.781219 GGGCAAAAGGATAATTAACCCTAAGTA 59.219 37.037 8.09 0.00 31.84 2.24
534 535 6.610020 GGGCAAAAGGATAATTAACCCTAAGT 59.390 38.462 8.09 0.00 31.84 2.24
535 536 6.839134 AGGGCAAAAGGATAATTAACCCTAAG 59.161 38.462 8.09 4.44 43.36 2.18
626 627 1.929806 TAGAACGAGTCGGTGCGCAT 61.930 55.000 15.91 0.00 0.00 4.73
759 760 1.111277 TGCTCAACGGCTCTATGCTA 58.889 50.000 0.00 0.00 42.39 3.49
891 911 4.227134 CGCGCCCTCCACAGCTAT 62.227 66.667 0.00 0.00 0.00 2.97
1048 1068 0.326264 GAAGACAGGCATCCCACACT 59.674 55.000 0.00 0.00 0.00 3.55
1087 1108 1.258445 AACCCTCCGATCAACGCTCT 61.258 55.000 0.00 0.00 41.07 4.09
1148 1169 3.005472 CGATTCTTACCCCATTCTCGCTA 59.995 47.826 0.00 0.00 0.00 4.26
1309 1331 2.039974 AGCATGCGCAACCATTCGA 61.040 52.632 17.11 0.00 42.27 3.71
1850 1939 1.068895 CATCTACCAGAGCTGAGGCAG 59.931 57.143 0.00 0.00 41.70 4.85
2235 2335 4.675063 ACATTTCTTCCCTACCCATGTT 57.325 40.909 0.00 0.00 0.00 2.71
2347 2451 4.044308 ACCTTCCAACCCTCCAAAATTTT 58.956 39.130 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.