Multiple sequence alignment - TraesCS3B01G091300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G091300 chr3B 100.000 3398 0 0 1 3398 60270263 60273660 0.000000e+00 6276
1 TraesCS3B01G091300 chr3B 86.754 687 53 16 2739 3398 296180431 296179756 0.000000e+00 730
2 TraesCS3B01G091300 chr5A 99.045 2826 21 1 579 3398 44279440 44276615 0.000000e+00 5064
3 TraesCS3B01G091300 chr7A 98.938 2824 23 2 579 3396 13133456 13130634 0.000000e+00 5042
4 TraesCS3B01G091300 chr7A 98.762 2826 29 1 579 3398 707670450 707673275 0.000000e+00 5020
5 TraesCS3B01G091300 chrUn 98.833 2827 26 2 579 3398 8808795 8805969 0.000000e+00 5031
6 TraesCS3B01G091300 chr7B 98.726 2826 27 4 579 3398 714452956 714450134 0.000000e+00 5011
7 TraesCS3B01G091300 chr7B 92.807 1863 45 20 1549 3398 214067482 214065696 0.000000e+00 2615
8 TraesCS3B01G091300 chr2A 98.232 2828 38 3 577 3398 734935072 734932251 0.000000e+00 4935
9 TraesCS3B01G091300 chr2A 97.350 2830 56 7 579 3398 2768049 2765229 0.000000e+00 4793
10 TraesCS3B01G091300 chr6B 97.632 2829 49 7 579 3398 704743237 704746056 0.000000e+00 4837
11 TraesCS3B01G091300 chr4B 97.174 2831 40 8 574 3398 621762626 621759830 0.000000e+00 4748
12 TraesCS3B01G091300 chr3D 85.941 441 18 16 12 421 37765752 37766179 6.740000e-117 431
13 TraesCS3B01G091300 chr3A 87.941 340 17 11 24 356 47836820 47837142 2.470000e-101 379
14 TraesCS3B01G091300 chr3A 91.765 85 7 0 492 576 47837254 47837338 5.960000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G091300 chr3B 60270263 60273660 3397 False 6276 6276 100.000 1 3398 1 chr3B.!!$F1 3397
1 TraesCS3B01G091300 chr3B 296179756 296180431 675 True 730 730 86.754 2739 3398 1 chr3B.!!$R1 659
2 TraesCS3B01G091300 chr5A 44276615 44279440 2825 True 5064 5064 99.045 579 3398 1 chr5A.!!$R1 2819
3 TraesCS3B01G091300 chr7A 13130634 13133456 2822 True 5042 5042 98.938 579 3396 1 chr7A.!!$R1 2817
4 TraesCS3B01G091300 chr7A 707670450 707673275 2825 False 5020 5020 98.762 579 3398 1 chr7A.!!$F1 2819
5 TraesCS3B01G091300 chrUn 8805969 8808795 2826 True 5031 5031 98.833 579 3398 1 chrUn.!!$R1 2819
6 TraesCS3B01G091300 chr7B 714450134 714452956 2822 True 5011 5011 98.726 579 3398 1 chr7B.!!$R2 2819
7 TraesCS3B01G091300 chr7B 214065696 214067482 1786 True 2615 2615 92.807 1549 3398 1 chr7B.!!$R1 1849
8 TraesCS3B01G091300 chr2A 734932251 734935072 2821 True 4935 4935 98.232 577 3398 1 chr2A.!!$R2 2821
9 TraesCS3B01G091300 chr2A 2765229 2768049 2820 True 4793 4793 97.350 579 3398 1 chr2A.!!$R1 2819
10 TraesCS3B01G091300 chr6B 704743237 704746056 2819 False 4837 4837 97.632 579 3398 1 chr6B.!!$F1 2819
11 TraesCS3B01G091300 chr4B 621759830 621762626 2796 True 4748 4748 97.174 574 3398 1 chr4B.!!$R1 2824
12 TraesCS3B01G091300 chr3A 47836820 47837338 518 False 249 379 89.853 24 576 2 chr3A.!!$F1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.028505 CGGCAGCGGATCTTTGATTG 59.971 55.0 0.00 0.00 0.00 2.67 F
256 257 0.031449 TGTCAAGACGCACGATGACA 59.969 50.0 19.11 19.11 42.85 3.58 F
373 374 0.036952 AGTCAGCATGTCCAAGTCCG 60.037 55.0 0.00 0.00 37.40 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 2060 2.356125 GCTTGGCCACCTCTTTCTCATA 60.356 50.000 3.88 0.0 0.0 2.15 R
2376 2458 6.971184 CACTTCACTCATTCATAATTGCCTTC 59.029 38.462 0.00 0.0 0.0 3.46 R
2497 2585 2.694397 CTCCCTCCCTCATACCATTCA 58.306 52.381 0.00 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.285275 TTCCCCTCAATCCCTCATGA 57.715 50.000 0.00 0.00 0.00 3.07
20 21 1.511613 TCCCCTCAATCCCTCATGAC 58.488 55.000 0.00 0.00 0.00 3.06
21 22 0.107456 CCCCTCAATCCCTCATGACG 59.893 60.000 0.00 0.00 0.00 4.35
22 23 1.123077 CCCTCAATCCCTCATGACGA 58.877 55.000 0.00 0.00 0.00 4.20
43 44 0.871057 GATAGCGGAGAAAGCATGGC 59.129 55.000 0.00 0.00 37.01 4.40
45 46 1.626356 TAGCGGAGAAAGCATGGCCT 61.626 55.000 3.32 0.00 37.01 5.19
74 75 1.603802 CTTTTGTCGCATGTGTCCACT 59.396 47.619 6.09 0.00 0.00 4.00
89 90 3.244422 TGTCCACTCGTAGCAGGAAATTT 60.244 43.478 0.00 0.00 0.00 1.82
95 96 5.637810 CACTCGTAGCAGGAAATTTTACTGA 59.362 40.000 22.87 2.41 34.21 3.41
132 133 2.114625 CCATGGCGGAGGATGCAT 59.885 61.111 0.00 0.00 36.56 3.96
133 134 1.529948 CCATGGCGGAGGATGCATT 60.530 57.895 0.00 0.00 36.56 3.56
134 135 0.250858 CCATGGCGGAGGATGCATTA 60.251 55.000 0.00 0.00 36.56 1.90
135 136 1.615116 CCATGGCGGAGGATGCATTAT 60.615 52.381 0.00 0.00 36.56 1.28
137 138 2.363306 TGGCGGAGGATGCATTATTT 57.637 45.000 0.00 0.00 0.00 1.40
150 151 2.223572 GCATTATTTCCTGGAACGGCAG 60.224 50.000 9.04 1.02 0.00 4.85
152 153 0.742990 TATTTCCTGGAACGGCAGCG 60.743 55.000 9.04 0.00 0.00 5.18
153 154 4.697756 TTCCTGGAACGGCAGCGG 62.698 66.667 4.68 0.00 0.00 5.52
155 156 4.473520 CCTGGAACGGCAGCGGAT 62.474 66.667 7.02 0.00 0.00 4.18
156 157 2.892425 CTGGAACGGCAGCGGATC 60.892 66.667 7.02 4.23 0.00 3.36
157 158 3.376935 CTGGAACGGCAGCGGATCT 62.377 63.158 7.02 0.00 0.00 2.75
158 159 2.125106 GGAACGGCAGCGGATCTT 60.125 61.111 7.02 0.00 0.00 2.40
159 160 1.745489 GGAACGGCAGCGGATCTTT 60.745 57.895 7.02 0.00 0.00 2.52
160 161 1.425428 GAACGGCAGCGGATCTTTG 59.575 57.895 7.02 0.00 0.00 2.77
161 162 1.003839 AACGGCAGCGGATCTTTGA 60.004 52.632 7.02 0.00 0.00 2.69
162 163 0.392998 AACGGCAGCGGATCTTTGAT 60.393 50.000 7.02 0.00 0.00 2.57
163 164 0.392998 ACGGCAGCGGATCTTTGATT 60.393 50.000 7.02 0.00 0.00 2.57
164 165 0.028505 CGGCAGCGGATCTTTGATTG 59.971 55.000 0.00 0.00 0.00 2.67
165 166 0.248784 GGCAGCGGATCTTTGATTGC 60.249 55.000 0.00 0.00 0.00 3.56
166 167 0.737219 GCAGCGGATCTTTGATTGCT 59.263 50.000 0.00 0.00 0.00 3.91
167 168 1.133790 GCAGCGGATCTTTGATTGCTT 59.866 47.619 0.00 0.00 0.00 3.91
168 169 2.793933 CAGCGGATCTTTGATTGCTTG 58.206 47.619 0.00 1.12 0.00 4.01
169 170 2.421073 CAGCGGATCTTTGATTGCTTGA 59.579 45.455 0.00 0.00 0.00 3.02
170 171 2.421424 AGCGGATCTTTGATTGCTTGAC 59.579 45.455 0.00 0.00 0.00 3.18
171 172 2.478539 GCGGATCTTTGATTGCTTGACC 60.479 50.000 0.00 0.00 0.00 4.02
172 173 2.098117 CGGATCTTTGATTGCTTGACCC 59.902 50.000 0.00 0.00 0.00 4.46
173 174 3.359950 GGATCTTTGATTGCTTGACCCT 58.640 45.455 0.00 0.00 0.00 4.34
174 175 4.526970 GGATCTTTGATTGCTTGACCCTA 58.473 43.478 0.00 0.00 0.00 3.53
175 176 4.578105 GGATCTTTGATTGCTTGACCCTAG 59.422 45.833 0.00 0.00 0.00 3.02
176 177 4.640771 TCTTTGATTGCTTGACCCTAGT 57.359 40.909 0.00 0.00 0.00 2.57
177 178 4.985538 TCTTTGATTGCTTGACCCTAGTT 58.014 39.130 0.00 0.00 0.00 2.24
178 179 6.121776 TCTTTGATTGCTTGACCCTAGTTA 57.878 37.500 0.00 0.00 0.00 2.24
179 180 6.539173 TCTTTGATTGCTTGACCCTAGTTAA 58.461 36.000 0.00 0.00 0.00 2.01
180 181 7.001674 TCTTTGATTGCTTGACCCTAGTTAAA 58.998 34.615 0.00 0.00 0.00 1.52
181 182 7.669722 TCTTTGATTGCTTGACCCTAGTTAAAT 59.330 33.333 0.00 0.00 0.00 1.40
182 183 6.757897 TGATTGCTTGACCCTAGTTAAATG 57.242 37.500 0.00 0.00 0.00 2.32
183 184 5.652014 TGATTGCTTGACCCTAGTTAAATGG 59.348 40.000 0.00 0.00 0.00 3.16
184 185 4.919774 TGCTTGACCCTAGTTAAATGGA 57.080 40.909 0.00 0.00 0.00 3.41
185 186 4.585879 TGCTTGACCCTAGTTAAATGGAC 58.414 43.478 0.00 0.00 0.00 4.02
186 187 4.288626 TGCTTGACCCTAGTTAAATGGACT 59.711 41.667 0.00 0.00 0.00 3.85
187 188 4.636206 GCTTGACCCTAGTTAAATGGACTG 59.364 45.833 0.00 0.00 0.00 3.51
188 189 5.570844 GCTTGACCCTAGTTAAATGGACTGA 60.571 44.000 0.00 0.00 0.00 3.41
189 190 6.442541 TTGACCCTAGTTAAATGGACTGAA 57.557 37.500 0.00 0.00 0.00 3.02
190 191 5.801380 TGACCCTAGTTAAATGGACTGAAC 58.199 41.667 0.00 0.00 0.00 3.18
191 192 5.308497 TGACCCTAGTTAAATGGACTGAACA 59.692 40.000 0.00 0.00 0.00 3.18
192 193 6.012858 TGACCCTAGTTAAATGGACTGAACAT 60.013 38.462 0.00 0.00 0.00 2.71
193 194 6.180472 ACCCTAGTTAAATGGACTGAACATG 58.820 40.000 0.00 0.00 0.00 3.21
194 195 6.180472 CCCTAGTTAAATGGACTGAACATGT 58.820 40.000 0.00 0.00 0.00 3.21
195 196 6.094048 CCCTAGTTAAATGGACTGAACATGTG 59.906 42.308 0.00 0.00 0.00 3.21
196 197 5.964958 AGTTAAATGGACTGAACATGTGG 57.035 39.130 0.00 0.00 0.00 4.17
197 198 5.630121 AGTTAAATGGACTGAACATGTGGA 58.370 37.500 0.00 0.00 0.00 4.02
198 199 6.068010 AGTTAAATGGACTGAACATGTGGAA 58.932 36.000 0.00 0.00 0.00 3.53
199 200 6.207417 AGTTAAATGGACTGAACATGTGGAAG 59.793 38.462 0.00 0.00 0.00 3.46
200 201 3.795688 ATGGACTGAACATGTGGAAGT 57.204 42.857 0.00 3.36 0.00 3.01
201 202 4.908601 ATGGACTGAACATGTGGAAGTA 57.091 40.909 0.00 0.00 0.00 2.24
202 203 4.002906 TGGACTGAACATGTGGAAGTAC 57.997 45.455 0.00 5.11 0.00 2.73
203 204 3.646162 TGGACTGAACATGTGGAAGTACT 59.354 43.478 15.41 0.00 0.00 2.73
204 205 4.836175 TGGACTGAACATGTGGAAGTACTA 59.164 41.667 15.41 4.07 0.00 1.82
205 206 5.047306 TGGACTGAACATGTGGAAGTACTAG 60.047 44.000 15.41 0.00 0.00 2.57
206 207 4.822026 ACTGAACATGTGGAAGTACTAGC 58.178 43.478 0.00 0.00 0.00 3.42
207 208 4.184629 CTGAACATGTGGAAGTACTAGCC 58.815 47.826 0.00 1.34 0.00 3.93
208 209 3.580895 TGAACATGTGGAAGTACTAGCCA 59.419 43.478 12.13 12.13 0.00 4.75
209 210 4.041075 TGAACATGTGGAAGTACTAGCCAA 59.959 41.667 16.50 9.36 32.68 4.52
210 211 4.207891 ACATGTGGAAGTACTAGCCAAG 57.792 45.455 16.50 12.53 32.68 3.61
211 212 3.583086 ACATGTGGAAGTACTAGCCAAGT 59.417 43.478 16.50 13.02 42.62 3.16
212 213 4.775780 ACATGTGGAAGTACTAGCCAAGTA 59.224 41.667 16.50 8.69 39.80 2.24
213 214 5.105310 ACATGTGGAAGTACTAGCCAAGTAG 60.105 44.000 16.50 10.66 41.42 2.57
214 215 4.413760 TGTGGAAGTACTAGCCAAGTAGT 58.586 43.478 16.50 0.00 44.71 2.73
215 216 5.573219 TGTGGAAGTACTAGCCAAGTAGTA 58.427 41.667 16.50 0.00 42.46 1.82
216 217 5.651139 TGTGGAAGTACTAGCCAAGTAGTAG 59.349 44.000 16.50 0.00 42.46 2.57
217 218 5.651576 GTGGAAGTACTAGCCAAGTAGTAGT 59.348 44.000 16.50 0.00 42.46 2.73
218 219 6.825721 GTGGAAGTACTAGCCAAGTAGTAGTA 59.174 42.308 16.50 0.00 42.46 1.82
219 220 7.012232 GTGGAAGTACTAGCCAAGTAGTAGTAG 59.988 44.444 16.50 0.00 42.46 2.57
220 221 6.486320 GGAAGTACTAGCCAAGTAGTAGTAGG 59.514 46.154 9.26 0.00 42.46 3.18
221 222 6.821616 AGTACTAGCCAAGTAGTAGTAGGA 57.178 41.667 0.00 0.00 41.66 2.94
222 223 7.205515 AGTACTAGCCAAGTAGTAGTAGGAA 57.794 40.000 0.00 0.00 41.66 3.36
223 224 7.053498 AGTACTAGCCAAGTAGTAGTAGGAAC 58.947 42.308 0.00 0.00 41.66 3.62
224 225 5.824421 ACTAGCCAAGTAGTAGTAGGAACA 58.176 41.667 0.00 0.00 36.36 3.18
225 226 6.251471 ACTAGCCAAGTAGTAGTAGGAACAA 58.749 40.000 0.00 0.00 36.36 2.83
226 227 5.662674 AGCCAAGTAGTAGTAGGAACAAG 57.337 43.478 0.00 0.00 0.00 3.16
227 228 5.331069 AGCCAAGTAGTAGTAGGAACAAGA 58.669 41.667 0.00 0.00 0.00 3.02
228 229 5.778750 AGCCAAGTAGTAGTAGGAACAAGAA 59.221 40.000 0.00 0.00 0.00 2.52
229 230 6.269307 AGCCAAGTAGTAGTAGGAACAAGAAA 59.731 38.462 0.00 0.00 0.00 2.52
230 231 6.590677 GCCAAGTAGTAGTAGGAACAAGAAAG 59.409 42.308 0.00 0.00 0.00 2.62
231 232 7.525029 GCCAAGTAGTAGTAGGAACAAGAAAGA 60.525 40.741 0.00 0.00 0.00 2.52
232 233 7.813627 CCAAGTAGTAGTAGGAACAAGAAAGAC 59.186 40.741 0.00 0.00 0.00 3.01
233 234 8.578151 CAAGTAGTAGTAGGAACAAGAAAGACT 58.422 37.037 0.00 0.00 0.00 3.24
234 235 8.709272 AGTAGTAGTAGGAACAAGAAAGACTT 57.291 34.615 0.00 0.00 39.70 3.01
235 236 9.804977 AGTAGTAGTAGGAACAAGAAAGACTTA 57.195 33.333 0.00 0.00 37.03 2.24
238 239 9.930693 AGTAGTAGGAACAAGAAAGACTTAATG 57.069 33.333 0.00 0.00 37.03 1.90
239 240 9.708092 GTAGTAGGAACAAGAAAGACTTAATGT 57.292 33.333 0.00 0.00 37.03 2.71
240 241 8.834749 AGTAGGAACAAGAAAGACTTAATGTC 57.165 34.615 0.00 0.00 45.67 3.06
250 251 3.354771 GACTTAATGTCAAGACGCACG 57.645 47.619 0.00 0.00 44.73 5.34
251 252 2.984471 GACTTAATGTCAAGACGCACGA 59.016 45.455 0.00 0.00 44.73 4.35
252 253 3.585862 ACTTAATGTCAAGACGCACGAT 58.414 40.909 0.00 0.00 0.00 3.73
253 254 3.367932 ACTTAATGTCAAGACGCACGATG 59.632 43.478 0.00 0.00 0.00 3.84
254 255 2.078849 AATGTCAAGACGCACGATGA 57.921 45.000 0.00 0.00 0.00 2.92
255 256 1.350193 ATGTCAAGACGCACGATGAC 58.650 50.000 15.84 15.84 39.15 3.06
256 257 0.031449 TGTCAAGACGCACGATGACA 59.969 50.000 19.11 19.11 42.85 3.58
257 258 0.435008 GTCAAGACGCACGATGACAC 59.565 55.000 16.98 0.00 38.82 3.67
258 259 0.666274 TCAAGACGCACGATGACACC 60.666 55.000 0.00 0.00 0.00 4.16
259 260 1.733041 AAGACGCACGATGACACCG 60.733 57.895 0.00 0.00 0.00 4.94
260 261 2.126618 GACGCACGATGACACCGA 60.127 61.111 0.00 0.00 0.00 4.69
261 262 2.430244 ACGCACGATGACACCGAC 60.430 61.111 0.00 0.00 0.00 4.79
262 263 2.430075 CGCACGATGACACCGACA 60.430 61.111 0.00 0.00 0.00 4.35
263 264 2.436539 CGCACGATGACACCGACAG 61.437 63.158 0.00 0.00 0.00 3.51
264 265 1.080772 GCACGATGACACCGACAGA 60.081 57.895 0.00 0.00 0.00 3.41
265 266 0.458543 GCACGATGACACCGACAGAT 60.459 55.000 0.00 0.00 0.00 2.90
266 267 1.996292 CACGATGACACCGACAGATT 58.004 50.000 0.00 0.00 0.00 2.40
267 268 1.655597 CACGATGACACCGACAGATTG 59.344 52.381 0.00 0.00 0.00 2.67
268 269 1.280982 CGATGACACCGACAGATTGG 58.719 55.000 0.00 0.00 35.11 3.16
269 270 1.404181 CGATGACACCGACAGATTGGT 60.404 52.381 0.00 0.00 44.35 3.67
270 271 2.271800 GATGACACCGACAGATTGGTC 58.728 52.381 0.00 0.00 41.16 4.02
271 272 1.338107 TGACACCGACAGATTGGTCT 58.662 50.000 0.00 0.00 41.16 3.85
272 273 1.691976 TGACACCGACAGATTGGTCTT 59.308 47.619 0.00 0.00 41.16 3.01
273 274 2.288825 TGACACCGACAGATTGGTCTTC 60.289 50.000 0.00 0.00 41.16 2.87
274 275 1.336887 ACACCGACAGATTGGTCTTCG 60.337 52.381 0.00 0.00 41.16 3.79
275 276 0.966920 ACCGACAGATTGGTCTTCGT 59.033 50.000 0.00 0.00 38.34 3.85
276 277 1.067776 ACCGACAGATTGGTCTTCGTC 60.068 52.381 0.00 0.00 38.34 4.20
277 278 1.067846 CCGACAGATTGGTCTTCGTCA 60.068 52.381 0.00 0.00 35.32 4.35
278 279 2.609491 CCGACAGATTGGTCTTCGTCAA 60.609 50.000 0.00 0.00 35.32 3.18
279 280 2.663602 CGACAGATTGGTCTTCGTCAAG 59.336 50.000 0.00 0.00 35.63 3.02
280 281 2.996621 GACAGATTGGTCTTCGTCAAGG 59.003 50.000 0.00 0.00 34.92 3.61
281 282 2.632996 ACAGATTGGTCTTCGTCAAGGA 59.367 45.455 0.00 0.00 30.42 3.36
282 283 3.071023 ACAGATTGGTCTTCGTCAAGGAA 59.929 43.478 0.00 0.00 30.42 3.36
283 284 4.065088 CAGATTGGTCTTCGTCAAGGAAA 58.935 43.478 0.00 0.00 30.42 3.13
284 285 4.515191 CAGATTGGTCTTCGTCAAGGAAAA 59.485 41.667 0.00 0.00 30.42 2.29
285 286 5.008613 CAGATTGGTCTTCGTCAAGGAAAAA 59.991 40.000 0.00 0.00 30.42 1.94
286 287 5.770162 AGATTGGTCTTCGTCAAGGAAAAAT 59.230 36.000 0.00 0.00 0.00 1.82
287 288 6.940298 AGATTGGTCTTCGTCAAGGAAAAATA 59.060 34.615 0.00 0.00 0.00 1.40
288 289 6.554334 TTGGTCTTCGTCAAGGAAAAATAG 57.446 37.500 0.00 0.00 0.00 1.73
289 290 5.001232 TGGTCTTCGTCAAGGAAAAATAGG 58.999 41.667 0.00 0.00 0.00 2.57
290 291 4.395231 GGTCTTCGTCAAGGAAAAATAGGG 59.605 45.833 0.00 0.00 0.00 3.53
291 292 4.395231 GTCTTCGTCAAGGAAAAATAGGGG 59.605 45.833 0.00 0.00 0.00 4.79
292 293 3.359695 TCGTCAAGGAAAAATAGGGGG 57.640 47.619 0.00 0.00 0.00 5.40
293 294 2.914278 TCGTCAAGGAAAAATAGGGGGA 59.086 45.455 0.00 0.00 0.00 4.81
294 295 3.331294 TCGTCAAGGAAAAATAGGGGGAA 59.669 43.478 0.00 0.00 0.00 3.97
295 296 3.694566 CGTCAAGGAAAAATAGGGGGAAG 59.305 47.826 0.00 0.00 0.00 3.46
296 297 4.566907 CGTCAAGGAAAAATAGGGGGAAGA 60.567 45.833 0.00 0.00 0.00 2.87
297 298 5.330233 GTCAAGGAAAAATAGGGGGAAGAA 58.670 41.667 0.00 0.00 0.00 2.52
298 299 5.419155 GTCAAGGAAAAATAGGGGGAAGAAG 59.581 44.000 0.00 0.00 0.00 2.85
299 300 4.609866 AGGAAAAATAGGGGGAAGAAGG 57.390 45.455 0.00 0.00 0.00 3.46
300 301 4.191963 AGGAAAAATAGGGGGAAGAAGGA 58.808 43.478 0.00 0.00 0.00 3.36
301 302 4.230733 AGGAAAAATAGGGGGAAGAAGGAG 59.769 45.833 0.00 0.00 0.00 3.69
302 303 4.229812 GGAAAAATAGGGGGAAGAAGGAGA 59.770 45.833 0.00 0.00 0.00 3.71
303 304 5.441500 GAAAAATAGGGGGAAGAAGGAGAG 58.558 45.833 0.00 0.00 0.00 3.20
304 305 2.110753 ATAGGGGGAAGAAGGAGAGC 57.889 55.000 0.00 0.00 0.00 4.09
305 306 0.716591 TAGGGGGAAGAAGGAGAGCA 59.283 55.000 0.00 0.00 0.00 4.26
306 307 0.178861 AGGGGGAAGAAGGAGAGCAA 60.179 55.000 0.00 0.00 0.00 3.91
307 308 0.922626 GGGGGAAGAAGGAGAGCAAT 59.077 55.000 0.00 0.00 0.00 3.56
308 309 1.133945 GGGGGAAGAAGGAGAGCAATC 60.134 57.143 0.00 0.00 0.00 2.67
309 310 1.133945 GGGGAAGAAGGAGAGCAATCC 60.134 57.143 0.00 0.00 39.89 3.01
332 333 8.754991 TCCTTGTAGGAAAACTGAAAATTACA 57.245 30.769 0.00 0.00 42.51 2.41
333 334 9.191479 TCCTTGTAGGAAAACTGAAAATTACAA 57.809 29.630 0.00 0.00 42.51 2.41
334 335 9.463443 CCTTGTAGGAAAACTGAAAATTACAAG 57.537 33.333 11.92 11.92 42.84 3.16
337 338 9.179909 TGTAGGAAAACTGAAAATTACAAGACA 57.820 29.630 0.00 0.00 0.00 3.41
344 345 9.476202 AAACTGAAAATTACAAGACAATAAGCC 57.524 29.630 0.00 0.00 0.00 4.35
345 346 7.305474 ACTGAAAATTACAAGACAATAAGCCG 58.695 34.615 0.00 0.00 0.00 5.52
346 347 6.616947 TGAAAATTACAAGACAATAAGCCGG 58.383 36.000 0.00 0.00 0.00 6.13
347 348 6.207810 TGAAAATTACAAGACAATAAGCCGGT 59.792 34.615 1.90 0.00 0.00 5.28
348 349 5.813080 AATTACAAGACAATAAGCCGGTC 57.187 39.130 1.90 0.00 0.00 4.79
349 350 2.851263 ACAAGACAATAAGCCGGTCA 57.149 45.000 1.90 0.00 34.04 4.02
350 351 2.699954 ACAAGACAATAAGCCGGTCAG 58.300 47.619 1.90 0.00 34.04 3.51
351 352 2.009774 CAAGACAATAAGCCGGTCAGG 58.990 52.381 1.90 0.00 44.97 3.86
352 353 1.276622 AGACAATAAGCCGGTCAGGT 58.723 50.000 1.90 0.00 43.70 4.00
353 354 1.207329 AGACAATAAGCCGGTCAGGTC 59.793 52.381 1.90 4.18 43.70 3.85
354 355 0.981183 ACAATAAGCCGGTCAGGTCA 59.019 50.000 1.90 0.00 43.70 4.02
355 356 1.066143 ACAATAAGCCGGTCAGGTCAG 60.066 52.381 1.90 0.00 43.70 3.51
356 357 1.066143 CAATAAGCCGGTCAGGTCAGT 60.066 52.381 1.90 0.00 43.70 3.41
357 358 0.824759 ATAAGCCGGTCAGGTCAGTC 59.175 55.000 1.90 0.00 43.70 3.51
358 359 0.541063 TAAGCCGGTCAGGTCAGTCA 60.541 55.000 1.90 0.00 43.70 3.41
359 360 1.821061 AAGCCGGTCAGGTCAGTCAG 61.821 60.000 1.90 0.00 43.70 3.51
360 361 2.262915 CCGGTCAGGTCAGTCAGC 59.737 66.667 0.00 0.00 34.51 4.26
361 362 2.574018 CCGGTCAGGTCAGTCAGCA 61.574 63.158 0.00 0.00 34.51 4.41
362 363 1.593787 CGGTCAGGTCAGTCAGCAT 59.406 57.895 0.00 0.00 0.00 3.79
363 364 0.738762 CGGTCAGGTCAGTCAGCATG 60.739 60.000 0.00 0.00 37.54 4.06
364 365 0.322975 GGTCAGGTCAGTCAGCATGT 59.677 55.000 0.00 0.00 37.40 3.21
365 366 1.674221 GGTCAGGTCAGTCAGCATGTC 60.674 57.143 0.00 0.00 37.40 3.06
366 367 0.610174 TCAGGTCAGTCAGCATGTCC 59.390 55.000 0.00 0.00 37.40 4.02
367 368 0.322648 CAGGTCAGTCAGCATGTCCA 59.677 55.000 0.00 0.00 37.40 4.02
368 369 1.059098 AGGTCAGTCAGCATGTCCAA 58.941 50.000 0.00 0.00 37.40 3.53
369 370 1.002888 AGGTCAGTCAGCATGTCCAAG 59.997 52.381 0.00 0.00 37.40 3.61
370 371 1.271054 GGTCAGTCAGCATGTCCAAGT 60.271 52.381 0.00 0.00 37.40 3.16
371 372 2.072298 GTCAGTCAGCATGTCCAAGTC 58.928 52.381 0.00 0.00 37.40 3.01
372 373 1.002430 TCAGTCAGCATGTCCAAGTCC 59.998 52.381 0.00 0.00 37.40 3.85
373 374 0.036952 AGTCAGCATGTCCAAGTCCG 60.037 55.000 0.00 0.00 37.40 4.79
374 375 0.320771 GTCAGCATGTCCAAGTCCGT 60.321 55.000 0.00 0.00 37.40 4.69
375 376 0.320683 TCAGCATGTCCAAGTCCGTG 60.321 55.000 0.00 0.00 37.40 4.94
376 377 0.603707 CAGCATGTCCAAGTCCGTGT 60.604 55.000 0.00 0.00 0.00 4.49
377 378 0.320771 AGCATGTCCAAGTCCGTGTC 60.321 55.000 0.00 0.00 0.00 3.67
378 379 1.626654 GCATGTCCAAGTCCGTGTCG 61.627 60.000 0.00 0.00 0.00 4.35
379 380 0.038618 CATGTCCAAGTCCGTGTCGA 60.039 55.000 0.00 0.00 0.00 4.20
380 381 0.895530 ATGTCCAAGTCCGTGTCGAT 59.104 50.000 0.00 0.00 0.00 3.59
381 382 0.677288 TGTCCAAGTCCGTGTCGATT 59.323 50.000 0.00 0.00 0.00 3.34
382 383 1.336517 TGTCCAAGTCCGTGTCGATTC 60.337 52.381 0.00 0.00 0.00 2.52
383 384 0.963225 TCCAAGTCCGTGTCGATTCA 59.037 50.000 0.00 0.00 0.00 2.57
384 385 1.341852 TCCAAGTCCGTGTCGATTCAA 59.658 47.619 0.00 0.00 0.00 2.69
385 386 1.726791 CCAAGTCCGTGTCGATTCAAG 59.273 52.381 0.00 0.00 0.00 3.02
386 387 1.126846 CAAGTCCGTGTCGATTCAAGC 59.873 52.381 0.00 0.00 0.00 4.01
387 388 0.732880 AGTCCGTGTCGATTCAAGCG 60.733 55.000 0.00 0.00 0.00 4.68
388 389 2.092291 TCCGTGTCGATTCAAGCGC 61.092 57.895 0.00 0.00 0.00 5.92
389 390 2.395690 CGTGTCGATTCAAGCGCC 59.604 61.111 2.29 0.00 0.00 6.53
390 391 2.785258 GTGTCGATTCAAGCGCCC 59.215 61.111 2.29 0.00 0.00 6.13
391 392 2.032634 GTGTCGATTCAAGCGCCCA 61.033 57.895 2.29 0.00 0.00 5.36
392 393 1.302112 TGTCGATTCAAGCGCCCAA 60.302 52.632 2.29 0.00 0.00 4.12
393 394 1.298157 TGTCGATTCAAGCGCCCAAG 61.298 55.000 2.29 0.00 0.00 3.61
394 395 1.003839 TCGATTCAAGCGCCCAAGT 60.004 52.632 2.29 0.00 0.00 3.16
395 396 0.605319 TCGATTCAAGCGCCCAAGTT 60.605 50.000 2.29 0.00 0.00 2.66
396 397 0.454957 CGATTCAAGCGCCCAAGTTG 60.455 55.000 2.29 1.00 0.00 3.16
397 398 0.598065 GATTCAAGCGCCCAAGTTGT 59.402 50.000 2.29 0.00 0.00 3.32
398 399 1.000274 GATTCAAGCGCCCAAGTTGTT 60.000 47.619 2.29 0.00 0.00 2.83
399 400 0.102120 TTCAAGCGCCCAAGTTGTTG 59.898 50.000 2.29 0.00 0.00 3.33
400 401 1.034838 TCAAGCGCCCAAGTTGTTGT 61.035 50.000 2.29 0.00 30.95 3.32
401 402 0.871163 CAAGCGCCCAAGTTGTTGTG 60.871 55.000 2.29 0.72 30.95 3.33
402 403 1.034838 AAGCGCCCAAGTTGTTGTGA 61.035 50.000 2.29 0.00 30.95 3.58
403 404 1.034838 AGCGCCCAAGTTGTTGTGAA 61.035 50.000 2.29 0.00 30.95 3.18
404 405 0.179124 GCGCCCAAGTTGTTGTGAAA 60.179 50.000 0.00 0.00 30.95 2.69
405 406 1.555477 CGCCCAAGTTGTTGTGAAAC 58.445 50.000 1.45 0.00 37.35 2.78
406 407 1.801025 CGCCCAAGTTGTTGTGAAACC 60.801 52.381 1.45 0.00 34.36 3.27
407 408 1.801025 GCCCAAGTTGTTGTGAAACCG 60.801 52.381 1.45 0.00 34.36 4.44
408 409 1.555477 CCAAGTTGTTGTGAAACCGC 58.445 50.000 1.45 0.00 34.36 5.68
409 410 1.135257 CCAAGTTGTTGTGAAACCGCA 60.135 47.619 1.45 0.00 34.36 5.69
410 411 2.600731 CAAGTTGTTGTGAAACCGCAA 58.399 42.857 0.00 0.00 34.36 4.85
411 412 2.559998 AGTTGTTGTGAAACCGCAAG 57.440 45.000 0.00 0.00 35.04 4.01
426 427 2.523015 CGCAAGGAAGATGATGTTTGC 58.477 47.619 0.00 0.00 37.98 3.68
427 428 2.163010 CGCAAGGAAGATGATGTTTGCT 59.837 45.455 5.61 0.00 38.89 3.91
428 429 3.366679 CGCAAGGAAGATGATGTTTGCTT 60.367 43.478 5.61 0.00 38.89 3.91
429 430 4.563061 GCAAGGAAGATGATGTTTGCTTT 58.437 39.130 0.20 0.00 38.23 3.51
430 431 4.992951 GCAAGGAAGATGATGTTTGCTTTT 59.007 37.500 0.20 0.00 38.23 2.27
431 432 6.158598 GCAAGGAAGATGATGTTTGCTTTTA 58.841 36.000 0.20 0.00 38.23 1.52
432 433 6.646240 GCAAGGAAGATGATGTTTGCTTTTAA 59.354 34.615 0.20 0.00 38.23 1.52
433 434 7.332678 GCAAGGAAGATGATGTTTGCTTTTAAT 59.667 33.333 0.20 0.00 38.23 1.40
434 435 9.859427 CAAGGAAGATGATGTTTGCTTTTAATA 57.141 29.630 0.00 0.00 33.47 0.98
441 442 9.599322 GATGATGTTTGCTTTTAATATACTCCG 57.401 33.333 0.00 0.00 0.00 4.63
442 443 8.500753 TGATGTTTGCTTTTAATATACTCCGT 57.499 30.769 0.00 0.00 0.00 4.69
443 444 9.602568 TGATGTTTGCTTTTAATATACTCCGTA 57.397 29.630 0.00 0.00 0.00 4.02
450 451 9.991906 TGCTTTTAATATACTCCGTATAAAGCT 57.008 29.630 20.82 0.00 41.67 3.74
455 456 6.777213 ATATACTCCGTATAAAGCTGAGGG 57.223 41.667 0.00 0.00 35.10 4.30
456 457 3.028094 ACTCCGTATAAAGCTGAGGGA 57.972 47.619 0.00 0.00 0.00 4.20
457 458 3.371965 ACTCCGTATAAAGCTGAGGGAA 58.628 45.455 0.00 0.00 0.00 3.97
458 459 3.773119 ACTCCGTATAAAGCTGAGGGAAA 59.227 43.478 0.00 0.00 0.00 3.13
459 460 4.120589 CTCCGTATAAAGCTGAGGGAAAC 58.879 47.826 0.00 0.00 0.00 2.78
475 476 4.686839 GGAAACCCTTTCTCTTCAATCG 57.313 45.455 0.00 0.00 39.59 3.34
476 477 3.440522 GGAAACCCTTTCTCTTCAATCGG 59.559 47.826 0.00 0.00 39.59 4.18
477 478 2.789409 ACCCTTTCTCTTCAATCGGG 57.211 50.000 0.00 0.00 36.30 5.14
478 479 2.266279 ACCCTTTCTCTTCAATCGGGA 58.734 47.619 0.00 0.00 34.35 5.14
479 480 2.642807 ACCCTTTCTCTTCAATCGGGAA 59.357 45.455 0.00 0.00 34.35 3.97
480 481 3.073946 ACCCTTTCTCTTCAATCGGGAAA 59.926 43.478 0.00 0.00 34.35 3.13
481 482 4.079253 CCCTTTCTCTTCAATCGGGAAAA 58.921 43.478 0.00 0.00 31.85 2.29
482 483 4.522789 CCCTTTCTCTTCAATCGGGAAAAA 59.477 41.667 0.00 0.00 31.85 1.94
483 484 5.461526 CCTTTCTCTTCAATCGGGAAAAAC 58.538 41.667 0.00 0.00 0.00 2.43
484 485 5.447624 TTTCTCTTCAATCGGGAAAAACC 57.552 39.130 0.00 0.00 38.08 3.27
485 486 4.367039 TCTCTTCAATCGGGAAAAACCT 57.633 40.909 0.00 0.00 38.98 3.50
486 487 4.725490 TCTCTTCAATCGGGAAAAACCTT 58.275 39.130 0.00 0.00 38.98 3.50
487 488 5.137551 TCTCTTCAATCGGGAAAAACCTTT 58.862 37.500 0.00 0.00 38.98 3.11
488 489 5.240844 TCTCTTCAATCGGGAAAAACCTTTC 59.759 40.000 0.00 0.00 40.31 2.62
489 490 3.907894 TCAATCGGGAAAAACCTTTCG 57.092 42.857 0.00 0.00 41.70 3.46
490 491 3.215975 TCAATCGGGAAAAACCTTTCGT 58.784 40.909 0.00 0.00 41.70 3.85
491 492 3.633065 TCAATCGGGAAAAACCTTTCGTT 59.367 39.130 0.00 0.00 41.70 3.85
492 493 4.098196 TCAATCGGGAAAAACCTTTCGTTT 59.902 37.500 0.00 0.00 46.92 3.60
530 531 9.743057 AGATCTACAATGAAGAAGTAGAATTCG 57.257 33.333 0.00 0.00 45.02 3.34
531 532 9.522804 GATCTACAATGAAGAAGTAGAATTCGT 57.477 33.333 5.72 0.00 45.02 3.85
532 533 8.689251 TCTACAATGAAGAAGTAGAATTCGTG 57.311 34.615 0.00 0.00 40.72 4.35
533 534 6.727824 ACAATGAAGAAGTAGAATTCGTGG 57.272 37.500 0.00 0.00 34.27 4.94
534 535 5.643777 ACAATGAAGAAGTAGAATTCGTGGG 59.356 40.000 0.00 0.00 34.27 4.61
535 536 4.202245 TGAAGAAGTAGAATTCGTGGGG 57.798 45.455 0.00 0.00 34.27 4.96
536 537 3.835978 TGAAGAAGTAGAATTCGTGGGGA 59.164 43.478 0.00 0.00 34.27 4.81
537 538 3.889520 AGAAGTAGAATTCGTGGGGAC 57.110 47.619 0.00 0.00 34.27 4.46
538 539 3.442076 AGAAGTAGAATTCGTGGGGACT 58.558 45.455 0.00 0.00 34.27 3.85
539 540 3.195825 AGAAGTAGAATTCGTGGGGACTG 59.804 47.826 0.00 0.00 34.27 3.51
540 541 2.816411 AGTAGAATTCGTGGGGACTGA 58.184 47.619 0.00 0.00 0.00 3.41
541 542 2.761208 AGTAGAATTCGTGGGGACTGAG 59.239 50.000 0.00 0.00 0.00 3.35
542 543 1.938585 AGAATTCGTGGGGACTGAGA 58.061 50.000 0.00 0.00 0.00 3.27
543 544 1.827969 AGAATTCGTGGGGACTGAGAG 59.172 52.381 0.00 0.00 0.00 3.20
544 545 1.550976 GAATTCGTGGGGACTGAGAGT 59.449 52.381 0.00 0.00 0.00 3.24
545 546 0.898320 ATTCGTGGGGACTGAGAGTG 59.102 55.000 0.00 0.00 0.00 3.51
546 547 0.469331 TTCGTGGGGACTGAGAGTGT 60.469 55.000 0.00 0.00 0.00 3.55
547 548 0.894184 TCGTGGGGACTGAGAGTGTC 60.894 60.000 0.00 0.00 0.00 3.67
548 549 0.896019 CGTGGGGACTGAGAGTGTCT 60.896 60.000 0.00 0.00 35.04 3.41
549 550 1.343069 GTGGGGACTGAGAGTGTCTT 58.657 55.000 0.00 0.00 35.04 3.01
550 551 1.694696 GTGGGGACTGAGAGTGTCTTT 59.305 52.381 0.00 0.00 35.04 2.52
551 552 2.897969 GTGGGGACTGAGAGTGTCTTTA 59.102 50.000 0.00 0.00 35.04 1.85
552 553 3.323979 GTGGGGACTGAGAGTGTCTTTAA 59.676 47.826 0.00 0.00 35.04 1.52
553 554 3.971305 TGGGGACTGAGAGTGTCTTTAAA 59.029 43.478 0.00 0.00 35.04 1.52
554 555 4.040461 TGGGGACTGAGAGTGTCTTTAAAG 59.960 45.833 9.04 9.04 35.04 1.85
555 556 4.563786 GGGGACTGAGAGTGTCTTTAAAGG 60.564 50.000 15.13 0.00 35.04 3.11
556 557 4.563786 GGGACTGAGAGTGTCTTTAAAGGG 60.564 50.000 15.13 0.00 35.04 3.95
557 558 4.283722 GGACTGAGAGTGTCTTTAAAGGGA 59.716 45.833 15.13 0.00 35.04 4.20
558 559 5.221661 GGACTGAGAGTGTCTTTAAAGGGAA 60.222 44.000 15.13 0.00 35.04 3.97
559 560 6.248569 ACTGAGAGTGTCTTTAAAGGGAAA 57.751 37.500 15.13 0.00 0.00 3.13
560 561 6.659824 ACTGAGAGTGTCTTTAAAGGGAAAA 58.340 36.000 15.13 0.00 0.00 2.29
561 562 6.542735 ACTGAGAGTGTCTTTAAAGGGAAAAC 59.457 38.462 15.13 6.25 0.00 2.43
562 563 5.526111 TGAGAGTGTCTTTAAAGGGAAAACG 59.474 40.000 15.13 0.00 0.00 3.60
563 564 5.434408 AGAGTGTCTTTAAAGGGAAAACGT 58.566 37.500 15.13 0.00 0.00 3.99
564 565 5.526479 AGAGTGTCTTTAAAGGGAAAACGTC 59.474 40.000 15.13 6.69 0.00 4.34
565 566 5.187687 AGTGTCTTTAAAGGGAAAACGTCA 58.812 37.500 15.13 0.00 0.00 4.35
566 567 5.065602 AGTGTCTTTAAAGGGAAAACGTCAC 59.934 40.000 15.13 9.91 0.00 3.67
567 568 4.336153 TGTCTTTAAAGGGAAAACGTCACC 59.664 41.667 15.13 0.00 0.00 4.02
568 569 4.336153 GTCTTTAAAGGGAAAACGTCACCA 59.664 41.667 15.13 0.00 0.00 4.17
569 570 5.009310 GTCTTTAAAGGGAAAACGTCACCAT 59.991 40.000 15.13 0.00 0.00 3.55
570 571 4.839668 TTAAAGGGAAAACGTCACCATG 57.160 40.909 0.00 0.00 0.00 3.66
571 572 0.958822 AAGGGAAAACGTCACCATGC 59.041 50.000 0.00 0.00 0.00 4.06
572 573 0.893727 AGGGAAAACGTCACCATGCC 60.894 55.000 0.00 0.00 0.00 4.40
573 574 1.175983 GGGAAAACGTCACCATGCCA 61.176 55.000 0.00 0.00 0.00 4.92
574 575 0.671251 GGAAAACGTCACCATGCCAA 59.329 50.000 0.00 0.00 0.00 4.52
575 576 1.335872 GGAAAACGTCACCATGCCAAG 60.336 52.381 0.00 0.00 0.00 3.61
657 658 6.717413 TCTACGTTTTTGTGCGAAAAACTAT 58.283 32.000 23.52 17.37 43.94 2.12
960 962 1.984066 GACCTAGGTCAGCCTATCGT 58.016 55.000 32.91 0.00 45.61 3.73
1323 1325 0.625316 TGGGTTGTCCTATGCAGCAT 59.375 50.000 13.73 13.73 36.20 3.79
1978 2060 1.963515 GGGTGAATGACAAACAAGCCT 59.036 47.619 0.00 0.00 0.00 4.58
2376 2458 3.204526 CAAAGCTAAGCTGGAGAGGATG 58.795 50.000 0.03 0.00 39.62 3.51
2497 2585 3.960102 TGGGAAAGTTTCATGTGCTTTCT 59.040 39.130 23.96 5.55 44.27 2.52
3275 3429 1.799403 GACTCGTCGTCAGAAGACTCA 59.201 52.381 13.76 0.89 42.73 3.41
3313 3467 1.152673 GGCCAAGGACCCATGGATC 60.153 63.158 15.22 5.01 36.99 3.36
3316 3470 1.528824 CAAGGACCCATGGATCGCT 59.471 57.895 15.22 1.77 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.846439 GTCATGAGGGATTGAGGGGAA 59.154 52.381 0.00 0.00 0.00 3.97
1 2 1.511613 GTCATGAGGGATTGAGGGGA 58.488 55.000 0.00 0.00 0.00 4.81
2 3 0.107456 CGTCATGAGGGATTGAGGGG 59.893 60.000 7.54 0.00 0.00 4.79
4 5 1.536922 CGTCGTCATGAGGGATTGAGG 60.537 57.143 15.05 0.00 0.00 3.86
5 6 1.405463 TCGTCGTCATGAGGGATTGAG 59.595 52.381 15.05 2.02 33.27 3.02
6 7 1.470051 TCGTCGTCATGAGGGATTGA 58.530 50.000 15.05 6.55 33.27 2.57
9 10 1.542030 GCTATCGTCGTCATGAGGGAT 59.458 52.381 15.05 12.50 33.27 3.85
10 11 0.952280 GCTATCGTCGTCATGAGGGA 59.048 55.000 15.05 6.24 33.27 4.20
11 12 0.386100 CGCTATCGTCGTCATGAGGG 60.386 60.000 15.05 1.49 33.27 4.30
12 13 0.386100 CCGCTATCGTCGTCATGAGG 60.386 60.000 9.16 9.16 0.00 3.86
13 14 0.586802 TCCGCTATCGTCGTCATGAG 59.413 55.000 0.00 0.00 0.00 2.90
14 15 0.586802 CTCCGCTATCGTCGTCATGA 59.413 55.000 0.00 0.00 0.00 3.07
15 16 0.586802 TCTCCGCTATCGTCGTCATG 59.413 55.000 0.00 0.00 0.00 3.07
16 17 1.306148 TTCTCCGCTATCGTCGTCAT 58.694 50.000 0.00 0.00 0.00 3.06
17 18 1.063616 CTTTCTCCGCTATCGTCGTCA 59.936 52.381 0.00 0.00 0.00 4.35
18 19 1.744374 CTTTCTCCGCTATCGTCGTC 58.256 55.000 0.00 0.00 0.00 4.20
19 20 0.248539 GCTTTCTCCGCTATCGTCGT 60.249 55.000 0.00 0.00 0.00 4.34
20 21 0.248498 TGCTTTCTCCGCTATCGTCG 60.248 55.000 0.00 0.00 0.00 5.12
21 22 1.789464 CATGCTTTCTCCGCTATCGTC 59.211 52.381 0.00 0.00 0.00 4.20
22 23 1.539065 CCATGCTTTCTCCGCTATCGT 60.539 52.381 0.00 0.00 0.00 3.73
43 44 3.648009 TGCGACAAAAGCCAAAATAAGG 58.352 40.909 0.00 0.00 0.00 2.69
45 46 4.447054 CACATGCGACAAAAGCCAAAATAA 59.553 37.500 0.00 0.00 0.00 1.40
74 75 5.119588 CGTTCAGTAAAATTTCCTGCTACGA 59.880 40.000 22.89 10.50 36.74 3.43
89 90 1.769733 CGTTCCGTTCCGTTCAGTAA 58.230 50.000 0.00 0.00 0.00 2.24
95 96 2.536673 GGTTGCGTTCCGTTCCGTT 61.537 57.895 0.00 0.00 0.00 4.44
125 126 3.004734 CCGTTCCAGGAAATAATGCATCC 59.995 47.826 2.45 0.00 0.00 3.51
126 127 3.550842 GCCGTTCCAGGAAATAATGCATC 60.551 47.826 2.45 0.00 0.00 3.91
127 128 2.362077 GCCGTTCCAGGAAATAATGCAT 59.638 45.455 2.45 0.00 0.00 3.96
130 131 2.223572 GCTGCCGTTCCAGGAAATAATG 60.224 50.000 2.45 0.00 33.44 1.90
132 133 1.459450 GCTGCCGTTCCAGGAAATAA 58.541 50.000 2.45 0.00 33.44 1.40
133 134 0.742990 CGCTGCCGTTCCAGGAAATA 60.743 55.000 2.45 0.00 33.44 1.40
134 135 2.040544 CGCTGCCGTTCCAGGAAAT 61.041 57.895 2.45 0.00 33.44 2.17
135 136 2.668212 CGCTGCCGTTCCAGGAAA 60.668 61.111 2.45 0.00 33.44 3.13
150 151 2.478539 GGTCAAGCAATCAAAGATCCGC 60.479 50.000 0.00 0.00 0.00 5.54
152 153 3.359950 AGGGTCAAGCAATCAAAGATCC 58.640 45.455 0.00 0.00 0.00 3.36
153 154 5.189180 ACTAGGGTCAAGCAATCAAAGATC 58.811 41.667 0.00 0.00 0.00 2.75
154 155 5.184892 ACTAGGGTCAAGCAATCAAAGAT 57.815 39.130 0.00 0.00 0.00 2.40
155 156 4.640771 ACTAGGGTCAAGCAATCAAAGA 57.359 40.909 0.00 0.00 0.00 2.52
156 157 6.817765 TTAACTAGGGTCAAGCAATCAAAG 57.182 37.500 0.00 0.00 0.00 2.77
157 158 7.309744 CCATTTAACTAGGGTCAAGCAATCAAA 60.310 37.037 0.00 0.00 0.00 2.69
158 159 6.152661 CCATTTAACTAGGGTCAAGCAATCAA 59.847 38.462 0.00 0.00 0.00 2.57
159 160 5.652014 CCATTTAACTAGGGTCAAGCAATCA 59.348 40.000 0.00 0.00 0.00 2.57
160 161 5.885912 TCCATTTAACTAGGGTCAAGCAATC 59.114 40.000 0.00 0.00 0.00 2.67
161 162 5.652452 GTCCATTTAACTAGGGTCAAGCAAT 59.348 40.000 0.00 0.00 0.00 3.56
162 163 5.007682 GTCCATTTAACTAGGGTCAAGCAA 58.992 41.667 0.00 0.00 0.00 3.91
163 164 4.288626 AGTCCATTTAACTAGGGTCAAGCA 59.711 41.667 0.00 0.00 0.00 3.91
164 165 4.636206 CAGTCCATTTAACTAGGGTCAAGC 59.364 45.833 0.00 0.00 0.00 4.01
165 166 6.049955 TCAGTCCATTTAACTAGGGTCAAG 57.950 41.667 0.00 0.00 0.00 3.02
166 167 6.183361 TGTTCAGTCCATTTAACTAGGGTCAA 60.183 38.462 0.00 0.00 0.00 3.18
167 168 5.308497 TGTTCAGTCCATTTAACTAGGGTCA 59.692 40.000 0.00 0.00 0.00 4.02
168 169 5.801380 TGTTCAGTCCATTTAACTAGGGTC 58.199 41.667 0.00 0.00 0.00 4.46
169 170 5.836024 TGTTCAGTCCATTTAACTAGGGT 57.164 39.130 0.00 0.00 0.00 4.34
170 171 6.094048 CACATGTTCAGTCCATTTAACTAGGG 59.906 42.308 0.00 0.00 0.00 3.53
171 172 6.094048 CCACATGTTCAGTCCATTTAACTAGG 59.906 42.308 0.00 0.00 0.00 3.02
172 173 6.878923 TCCACATGTTCAGTCCATTTAACTAG 59.121 38.462 0.00 0.00 0.00 2.57
173 174 6.774673 TCCACATGTTCAGTCCATTTAACTA 58.225 36.000 0.00 0.00 0.00 2.24
174 175 5.630121 TCCACATGTTCAGTCCATTTAACT 58.370 37.500 0.00 0.00 0.00 2.24
175 176 5.957842 TCCACATGTTCAGTCCATTTAAC 57.042 39.130 0.00 0.00 0.00 2.01
176 177 6.068010 ACTTCCACATGTTCAGTCCATTTAA 58.932 36.000 0.00 0.00 0.00 1.52
177 178 5.630121 ACTTCCACATGTTCAGTCCATTTA 58.370 37.500 0.00 0.00 0.00 1.40
178 179 4.473444 ACTTCCACATGTTCAGTCCATTT 58.527 39.130 0.00 0.00 0.00 2.32
179 180 4.104383 ACTTCCACATGTTCAGTCCATT 57.896 40.909 0.00 0.00 0.00 3.16
180 181 3.795688 ACTTCCACATGTTCAGTCCAT 57.204 42.857 0.00 0.00 0.00 3.41
181 182 3.646162 AGTACTTCCACATGTTCAGTCCA 59.354 43.478 0.00 0.00 0.00 4.02
182 183 4.273148 AGTACTTCCACATGTTCAGTCC 57.727 45.455 0.00 0.00 0.00 3.85
183 184 4.865365 GCTAGTACTTCCACATGTTCAGTC 59.135 45.833 0.00 0.00 0.00 3.51
184 185 4.322801 GGCTAGTACTTCCACATGTTCAGT 60.323 45.833 0.00 0.82 0.00 3.41
185 186 4.184629 GGCTAGTACTTCCACATGTTCAG 58.815 47.826 0.00 0.00 0.00 3.02
186 187 3.580895 TGGCTAGTACTTCCACATGTTCA 59.419 43.478 0.00 0.00 0.00 3.18
187 188 4.202245 TGGCTAGTACTTCCACATGTTC 57.798 45.455 0.00 0.00 0.00 3.18
188 189 4.041691 ACTTGGCTAGTACTTCCACATGTT 59.958 41.667 14.05 0.00 34.56 2.71
189 190 3.583086 ACTTGGCTAGTACTTCCACATGT 59.417 43.478 14.05 11.07 34.56 3.21
190 191 4.207891 ACTTGGCTAGTACTTCCACATG 57.792 45.455 14.05 10.60 34.56 3.21
191 192 5.024118 ACTACTTGGCTAGTACTTCCACAT 58.976 41.667 14.05 9.11 38.33 3.21
192 193 4.413760 ACTACTTGGCTAGTACTTCCACA 58.586 43.478 14.05 1.53 38.33 4.17
193 194 5.651576 ACTACTACTTGGCTAGTACTTCCAC 59.348 44.000 14.05 0.00 38.33 4.02
194 195 5.824421 ACTACTACTTGGCTAGTACTTCCA 58.176 41.667 0.00 6.58 38.33 3.53
195 196 6.486320 CCTACTACTACTTGGCTAGTACTTCC 59.514 46.154 0.00 3.66 38.33 3.46
196 197 7.278875 TCCTACTACTACTTGGCTAGTACTTC 58.721 42.308 0.00 0.00 38.33 3.01
197 198 7.205515 TCCTACTACTACTTGGCTAGTACTT 57.794 40.000 0.00 0.00 38.33 2.24
198 199 6.821616 TCCTACTACTACTTGGCTAGTACT 57.178 41.667 4.66 0.00 38.33 2.73
199 200 6.825721 TGTTCCTACTACTACTTGGCTAGTAC 59.174 42.308 4.66 0.00 38.33 2.73
200 201 6.962182 TGTTCCTACTACTACTTGGCTAGTA 58.038 40.000 8.48 8.48 38.33 1.82
201 202 5.824421 TGTTCCTACTACTACTTGGCTAGT 58.176 41.667 6.84 6.84 41.04 2.57
202 203 6.602406 TCTTGTTCCTACTACTACTTGGCTAG 59.398 42.308 0.00 0.00 0.00 3.42
203 204 6.487828 TCTTGTTCCTACTACTACTTGGCTA 58.512 40.000 0.00 0.00 0.00 3.93
204 205 5.331069 TCTTGTTCCTACTACTACTTGGCT 58.669 41.667 0.00 0.00 0.00 4.75
205 206 5.656213 TCTTGTTCCTACTACTACTTGGC 57.344 43.478 0.00 0.00 0.00 4.52
206 207 7.813627 GTCTTTCTTGTTCCTACTACTACTTGG 59.186 40.741 0.00 0.00 0.00 3.61
207 208 8.578151 AGTCTTTCTTGTTCCTACTACTACTTG 58.422 37.037 0.00 0.00 0.00 3.16
208 209 8.709272 AGTCTTTCTTGTTCCTACTACTACTT 57.291 34.615 0.00 0.00 0.00 2.24
209 210 8.709272 AAGTCTTTCTTGTTCCTACTACTACT 57.291 34.615 0.00 0.00 34.77 2.57
212 213 9.930693 CATTAAGTCTTTCTTGTTCCTACTACT 57.069 33.333 0.00 0.00 37.56 2.57
213 214 9.708092 ACATTAAGTCTTTCTTGTTCCTACTAC 57.292 33.333 0.00 0.00 37.56 2.73
214 215 9.924650 GACATTAAGTCTTTCTTGTTCCTACTA 57.075 33.333 0.00 0.00 44.09 1.82
215 216 8.834749 GACATTAAGTCTTTCTTGTTCCTACT 57.165 34.615 0.00 0.00 44.09 2.57
231 232 3.021269 TCGTGCGTCTTGACATTAAGT 57.979 42.857 1.59 0.00 0.00 2.24
232 233 3.612423 TCATCGTGCGTCTTGACATTAAG 59.388 43.478 1.59 0.00 0.00 1.85
233 234 3.366724 GTCATCGTGCGTCTTGACATTAA 59.633 43.478 14.68 0.00 38.63 1.40
234 235 2.921121 GTCATCGTGCGTCTTGACATTA 59.079 45.455 14.68 0.00 38.63 1.90
235 236 1.726791 GTCATCGTGCGTCTTGACATT 59.273 47.619 14.68 0.00 38.63 2.71
236 237 1.336795 TGTCATCGTGCGTCTTGACAT 60.337 47.619 16.75 0.00 42.46 3.06
237 238 0.031449 TGTCATCGTGCGTCTTGACA 59.969 50.000 16.75 16.75 44.44 3.58
238 239 0.435008 GTGTCATCGTGCGTCTTGAC 59.565 55.000 13.55 13.55 39.11 3.18
239 240 0.666274 GGTGTCATCGTGCGTCTTGA 60.666 55.000 0.00 0.00 0.00 3.02
240 241 1.781555 GGTGTCATCGTGCGTCTTG 59.218 57.895 0.00 0.00 0.00 3.02
241 242 1.733041 CGGTGTCATCGTGCGTCTT 60.733 57.895 0.00 0.00 0.00 3.01
242 243 2.126463 CGGTGTCATCGTGCGTCT 60.126 61.111 0.00 0.00 0.00 4.18
243 244 2.126618 TCGGTGTCATCGTGCGTC 60.127 61.111 5.22 0.00 0.00 5.19
244 245 2.430244 GTCGGTGTCATCGTGCGT 60.430 61.111 5.22 0.00 0.00 5.24
245 246 2.430075 TGTCGGTGTCATCGTGCG 60.430 61.111 5.22 0.00 0.00 5.34
246 247 0.458543 ATCTGTCGGTGTCATCGTGC 60.459 55.000 5.22 0.87 0.00 5.34
247 248 1.655597 CAATCTGTCGGTGTCATCGTG 59.344 52.381 5.22 0.00 0.00 4.35
248 249 1.404181 CCAATCTGTCGGTGTCATCGT 60.404 52.381 5.22 0.00 0.00 3.73
249 250 1.280982 CCAATCTGTCGGTGTCATCG 58.719 55.000 0.00 0.00 0.00 3.84
250 251 2.093973 AGACCAATCTGTCGGTGTCATC 60.094 50.000 0.00 0.00 40.26 2.92
251 252 1.902508 AGACCAATCTGTCGGTGTCAT 59.097 47.619 0.00 0.00 40.26 3.06
252 253 1.338107 AGACCAATCTGTCGGTGTCA 58.662 50.000 0.00 0.00 40.26 3.58
253 254 2.338500 GAAGACCAATCTGTCGGTGTC 58.662 52.381 0.00 0.00 40.26 3.67
254 255 1.336887 CGAAGACCAATCTGTCGGTGT 60.337 52.381 0.00 0.00 40.26 4.16
255 256 1.336887 ACGAAGACCAATCTGTCGGTG 60.337 52.381 0.00 0.00 40.26 4.94
256 257 0.966920 ACGAAGACCAATCTGTCGGT 59.033 50.000 0.00 0.00 40.26 4.69
257 258 1.067846 TGACGAAGACCAATCTGTCGG 60.068 52.381 0.00 0.00 40.26 4.79
258 259 2.347697 TGACGAAGACCAATCTGTCG 57.652 50.000 0.00 0.00 40.26 4.35
259 260 2.996621 CCTTGACGAAGACCAATCTGTC 59.003 50.000 0.00 0.00 34.48 3.51
260 261 2.632996 TCCTTGACGAAGACCAATCTGT 59.367 45.455 0.00 0.00 34.48 3.41
261 262 3.319137 TCCTTGACGAAGACCAATCTG 57.681 47.619 0.00 0.00 34.48 2.90
262 263 4.351874 TTTCCTTGACGAAGACCAATCT 57.648 40.909 0.00 0.00 36.42 2.40
263 264 5.432885 TTTTTCCTTGACGAAGACCAATC 57.567 39.130 0.00 0.00 0.00 2.67
264 265 6.151144 CCTATTTTTCCTTGACGAAGACCAAT 59.849 38.462 0.00 0.00 0.00 3.16
265 266 5.472137 CCTATTTTTCCTTGACGAAGACCAA 59.528 40.000 0.00 0.00 0.00 3.67
266 267 5.001232 CCTATTTTTCCTTGACGAAGACCA 58.999 41.667 0.00 0.00 0.00 4.02
267 268 4.395231 CCCTATTTTTCCTTGACGAAGACC 59.605 45.833 0.00 0.00 0.00 3.85
268 269 4.395231 CCCCTATTTTTCCTTGACGAAGAC 59.605 45.833 0.00 0.00 0.00 3.01
269 270 4.566907 CCCCCTATTTTTCCTTGACGAAGA 60.567 45.833 0.00 0.00 0.00 2.87
270 271 3.694566 CCCCCTATTTTTCCTTGACGAAG 59.305 47.826 0.00 0.00 0.00 3.79
271 272 3.331294 TCCCCCTATTTTTCCTTGACGAA 59.669 43.478 0.00 0.00 0.00 3.85
272 273 2.914278 TCCCCCTATTTTTCCTTGACGA 59.086 45.455 0.00 0.00 0.00 4.20
273 274 3.359695 TCCCCCTATTTTTCCTTGACG 57.640 47.619 0.00 0.00 0.00 4.35
274 275 4.930696 TCTTCCCCCTATTTTTCCTTGAC 58.069 43.478 0.00 0.00 0.00 3.18
275 276 5.518367 CCTTCTTCCCCCTATTTTTCCTTGA 60.518 44.000 0.00 0.00 0.00 3.02
276 277 4.711846 CCTTCTTCCCCCTATTTTTCCTTG 59.288 45.833 0.00 0.00 0.00 3.61
277 278 4.610703 TCCTTCTTCCCCCTATTTTTCCTT 59.389 41.667 0.00 0.00 0.00 3.36
278 279 4.191963 TCCTTCTTCCCCCTATTTTTCCT 58.808 43.478 0.00 0.00 0.00 3.36
279 280 4.229812 TCTCCTTCTTCCCCCTATTTTTCC 59.770 45.833 0.00 0.00 0.00 3.13
280 281 5.441500 CTCTCCTTCTTCCCCCTATTTTTC 58.558 45.833 0.00 0.00 0.00 2.29
281 282 4.325422 GCTCTCCTTCTTCCCCCTATTTTT 60.325 45.833 0.00 0.00 0.00 1.94
282 283 3.203263 GCTCTCCTTCTTCCCCCTATTTT 59.797 47.826 0.00 0.00 0.00 1.82
283 284 2.780592 GCTCTCCTTCTTCCCCCTATTT 59.219 50.000 0.00 0.00 0.00 1.40
284 285 2.293856 TGCTCTCCTTCTTCCCCCTATT 60.294 50.000 0.00 0.00 0.00 1.73
285 286 1.295292 TGCTCTCCTTCTTCCCCCTAT 59.705 52.381 0.00 0.00 0.00 2.57
286 287 0.716591 TGCTCTCCTTCTTCCCCCTA 59.283 55.000 0.00 0.00 0.00 3.53
287 288 0.178861 TTGCTCTCCTTCTTCCCCCT 60.179 55.000 0.00 0.00 0.00 4.79
288 289 0.922626 ATTGCTCTCCTTCTTCCCCC 59.077 55.000 0.00 0.00 0.00 5.40
289 290 1.133945 GGATTGCTCTCCTTCTTCCCC 60.134 57.143 0.00 0.00 32.18 4.81
290 291 1.843206 AGGATTGCTCTCCTTCTTCCC 59.157 52.381 2.17 0.00 43.33 3.97
306 307 9.362151 TGTAATTTTCAGTTTTCCTACAAGGAT 57.638 29.630 0.00 0.00 45.34 3.24
307 308 8.754991 TGTAATTTTCAGTTTTCCTACAAGGA 57.245 30.769 0.00 0.00 44.10 3.36
308 309 9.463443 CTTGTAATTTTCAGTTTTCCTACAAGG 57.537 33.333 9.66 0.00 40.20 3.61
311 312 9.179909 TGTCTTGTAATTTTCAGTTTTCCTACA 57.820 29.630 0.00 0.00 0.00 2.74
318 319 9.476202 GGCTTATTGTCTTGTAATTTTCAGTTT 57.524 29.630 0.00 0.00 0.00 2.66
319 320 7.807907 CGGCTTATTGTCTTGTAATTTTCAGTT 59.192 33.333 0.00 0.00 0.00 3.16
320 321 7.305474 CGGCTTATTGTCTTGTAATTTTCAGT 58.695 34.615 0.00 0.00 0.00 3.41
321 322 6.747280 CCGGCTTATTGTCTTGTAATTTTCAG 59.253 38.462 0.00 0.00 0.00 3.02
322 323 6.207810 ACCGGCTTATTGTCTTGTAATTTTCA 59.792 34.615 0.00 0.00 0.00 2.69
323 324 6.617879 ACCGGCTTATTGTCTTGTAATTTTC 58.382 36.000 0.00 0.00 0.00 2.29
324 325 6.207810 TGACCGGCTTATTGTCTTGTAATTTT 59.792 34.615 0.00 0.00 0.00 1.82
325 326 5.708230 TGACCGGCTTATTGTCTTGTAATTT 59.292 36.000 0.00 0.00 0.00 1.82
326 327 5.250200 TGACCGGCTTATTGTCTTGTAATT 58.750 37.500 0.00 0.00 0.00 1.40
327 328 4.839121 TGACCGGCTTATTGTCTTGTAAT 58.161 39.130 0.00 0.00 0.00 1.89
328 329 4.250464 CTGACCGGCTTATTGTCTTGTAA 58.750 43.478 0.00 0.00 0.00 2.41
329 330 3.369052 CCTGACCGGCTTATTGTCTTGTA 60.369 47.826 0.00 0.00 0.00 2.41
330 331 2.615493 CCTGACCGGCTTATTGTCTTGT 60.615 50.000 0.00 0.00 0.00 3.16
331 332 2.009774 CCTGACCGGCTTATTGTCTTG 58.990 52.381 0.00 0.00 0.00 3.02
332 333 1.628846 ACCTGACCGGCTTATTGTCTT 59.371 47.619 0.00 0.00 35.61 3.01
333 334 1.207329 GACCTGACCGGCTTATTGTCT 59.793 52.381 0.00 0.00 35.61 3.41
334 335 1.066430 TGACCTGACCGGCTTATTGTC 60.066 52.381 0.00 1.61 35.61 3.18
335 336 0.981183 TGACCTGACCGGCTTATTGT 59.019 50.000 0.00 0.00 35.61 2.71
336 337 1.066143 ACTGACCTGACCGGCTTATTG 60.066 52.381 0.00 0.00 35.61 1.90
337 338 1.207329 GACTGACCTGACCGGCTTATT 59.793 52.381 0.00 0.00 35.61 1.40
338 339 0.824759 GACTGACCTGACCGGCTTAT 59.175 55.000 0.00 0.00 35.61 1.73
339 340 0.541063 TGACTGACCTGACCGGCTTA 60.541 55.000 0.00 0.00 35.61 3.09
340 341 1.821061 CTGACTGACCTGACCGGCTT 61.821 60.000 0.00 0.00 35.61 4.35
341 342 2.203640 TGACTGACCTGACCGGCT 60.204 61.111 0.00 0.00 35.61 5.52
342 343 2.262915 CTGACTGACCTGACCGGC 59.737 66.667 0.00 0.00 35.61 6.13
343 344 1.892819 ATGCTGACTGACCTGACCGG 61.893 60.000 0.00 0.00 39.35 5.28
344 345 0.738762 CATGCTGACTGACCTGACCG 60.739 60.000 0.00 0.00 0.00 4.79
345 346 0.322975 ACATGCTGACTGACCTGACC 59.677 55.000 0.00 0.00 0.00 4.02
346 347 1.674221 GGACATGCTGACTGACCTGAC 60.674 57.143 0.00 0.00 0.00 3.51
347 348 0.610174 GGACATGCTGACTGACCTGA 59.390 55.000 0.00 0.00 0.00 3.86
348 349 0.322648 TGGACATGCTGACTGACCTG 59.677 55.000 0.00 0.00 31.00 4.00
349 350 1.002888 CTTGGACATGCTGACTGACCT 59.997 52.381 0.00 0.00 31.00 3.85
350 351 1.271054 ACTTGGACATGCTGACTGACC 60.271 52.381 0.00 0.00 0.00 4.02
351 352 2.072298 GACTTGGACATGCTGACTGAC 58.928 52.381 0.00 0.00 0.00 3.51
352 353 1.002430 GGACTTGGACATGCTGACTGA 59.998 52.381 0.00 0.00 0.00 3.41
353 354 1.446907 GGACTTGGACATGCTGACTG 58.553 55.000 0.00 0.00 0.00 3.51
354 355 0.036952 CGGACTTGGACATGCTGACT 60.037 55.000 0.00 0.00 0.00 3.41
355 356 0.320771 ACGGACTTGGACATGCTGAC 60.321 55.000 0.00 0.00 0.00 3.51
356 357 0.320683 CACGGACTTGGACATGCTGA 60.321 55.000 0.00 0.00 0.00 4.26
357 358 0.603707 ACACGGACTTGGACATGCTG 60.604 55.000 0.00 0.00 0.00 4.41
358 359 0.320771 GACACGGACTTGGACATGCT 60.321 55.000 0.00 0.00 0.00 3.79
359 360 1.626654 CGACACGGACTTGGACATGC 61.627 60.000 0.00 0.00 0.00 4.06
360 361 0.038618 TCGACACGGACTTGGACATG 60.039 55.000 0.00 0.00 0.00 3.21
361 362 0.895530 ATCGACACGGACTTGGACAT 59.104 50.000 0.00 0.00 0.00 3.06
362 363 0.677288 AATCGACACGGACTTGGACA 59.323 50.000 0.00 0.00 0.00 4.02
363 364 1.336517 TGAATCGACACGGACTTGGAC 60.337 52.381 0.00 0.00 0.00 4.02
364 365 0.963225 TGAATCGACACGGACTTGGA 59.037 50.000 0.00 0.00 0.00 3.53
365 366 1.726791 CTTGAATCGACACGGACTTGG 59.273 52.381 0.00 0.00 0.00 3.61
366 367 1.126846 GCTTGAATCGACACGGACTTG 59.873 52.381 0.00 0.00 0.00 3.16
367 368 1.429463 GCTTGAATCGACACGGACTT 58.571 50.000 0.00 0.00 0.00 3.01
368 369 0.732880 CGCTTGAATCGACACGGACT 60.733 55.000 0.00 0.00 0.00 3.85
369 370 1.702299 CGCTTGAATCGACACGGAC 59.298 57.895 0.00 0.00 0.00 4.79
370 371 2.092291 GCGCTTGAATCGACACGGA 61.092 57.895 0.00 0.00 0.00 4.69
371 372 2.395690 GCGCTTGAATCGACACGG 59.604 61.111 0.00 0.00 0.00 4.94
372 373 2.395690 GGCGCTTGAATCGACACG 59.604 61.111 7.64 0.00 34.56 4.49
373 374 1.573829 TTGGGCGCTTGAATCGACAC 61.574 55.000 7.64 0.00 36.51 3.67
374 375 1.298157 CTTGGGCGCTTGAATCGACA 61.298 55.000 7.64 0.00 36.51 4.35
375 376 1.298859 ACTTGGGCGCTTGAATCGAC 61.299 55.000 7.64 0.00 0.00 4.20
376 377 0.605319 AACTTGGGCGCTTGAATCGA 60.605 50.000 7.64 0.00 0.00 3.59
377 378 0.454957 CAACTTGGGCGCTTGAATCG 60.455 55.000 7.64 0.00 0.00 3.34
378 379 0.598065 ACAACTTGGGCGCTTGAATC 59.402 50.000 7.64 0.00 0.00 2.52
379 380 1.039856 AACAACTTGGGCGCTTGAAT 58.960 45.000 7.64 0.00 0.00 2.57
380 381 0.102120 CAACAACTTGGGCGCTTGAA 59.898 50.000 7.64 0.00 0.00 2.69
381 382 1.034838 ACAACAACTTGGGCGCTTGA 61.035 50.000 7.64 0.00 0.00 3.02
382 383 0.871163 CACAACAACTTGGGCGCTTG 60.871 55.000 7.64 6.01 0.00 4.01
383 384 1.034838 TCACAACAACTTGGGCGCTT 61.035 50.000 7.64 0.00 29.89 4.68
384 385 1.034838 TTCACAACAACTTGGGCGCT 61.035 50.000 7.64 0.00 29.89 5.92
385 386 0.179124 TTTCACAACAACTTGGGCGC 60.179 50.000 0.00 0.00 29.89 6.53
386 387 1.555477 GTTTCACAACAACTTGGGCG 58.445 50.000 0.00 0.00 29.89 6.13
387 388 1.801025 CGGTTTCACAACAACTTGGGC 60.801 52.381 0.00 0.00 34.15 5.36
388 389 1.801025 GCGGTTTCACAACAACTTGGG 60.801 52.381 0.00 0.00 34.15 4.12
389 390 1.135257 TGCGGTTTCACAACAACTTGG 60.135 47.619 0.00 0.00 34.15 3.61
390 391 2.270275 TGCGGTTTCACAACAACTTG 57.730 45.000 0.00 0.00 34.15 3.16
391 392 2.416701 CCTTGCGGTTTCACAACAACTT 60.417 45.455 0.00 0.00 34.15 2.66
392 393 1.134175 CCTTGCGGTTTCACAACAACT 59.866 47.619 0.00 0.00 34.15 3.16
393 394 1.133407 TCCTTGCGGTTTCACAACAAC 59.867 47.619 0.00 0.00 34.15 3.32
394 395 1.464734 TCCTTGCGGTTTCACAACAA 58.535 45.000 0.00 0.00 34.15 2.83
395 396 1.403679 CTTCCTTGCGGTTTCACAACA 59.596 47.619 0.00 0.00 34.15 3.33
396 397 1.673920 TCTTCCTTGCGGTTTCACAAC 59.326 47.619 0.00 0.00 0.00 3.32
397 398 2.045561 TCTTCCTTGCGGTTTCACAA 57.954 45.000 0.00 0.00 0.00 3.33
398 399 1.879380 CATCTTCCTTGCGGTTTCACA 59.121 47.619 0.00 0.00 0.00 3.58
399 400 2.151202 TCATCTTCCTTGCGGTTTCAC 58.849 47.619 0.00 0.00 0.00 3.18
400 401 2.559698 TCATCTTCCTTGCGGTTTCA 57.440 45.000 0.00 0.00 0.00 2.69
401 402 2.749621 ACATCATCTTCCTTGCGGTTTC 59.250 45.455 0.00 0.00 0.00 2.78
402 403 2.795329 ACATCATCTTCCTTGCGGTTT 58.205 42.857 0.00 0.00 0.00 3.27
403 404 2.496899 ACATCATCTTCCTTGCGGTT 57.503 45.000 0.00 0.00 0.00 4.44
404 405 2.489329 CAAACATCATCTTCCTTGCGGT 59.511 45.455 0.00 0.00 0.00 5.68
405 406 2.733227 GCAAACATCATCTTCCTTGCGG 60.733 50.000 0.00 0.00 30.95 5.69
406 407 2.163010 AGCAAACATCATCTTCCTTGCG 59.837 45.455 0.00 0.00 42.98 4.85
407 408 3.863142 AGCAAACATCATCTTCCTTGC 57.137 42.857 0.00 0.00 39.50 4.01
408 409 8.767478 ATTAAAAGCAAACATCATCTTCCTTG 57.233 30.769 0.00 0.00 0.00 3.61
415 416 9.599322 CGGAGTATATTAAAAGCAAACATCATC 57.401 33.333 0.00 0.00 0.00 2.92
416 417 9.120538 ACGGAGTATATTAAAAGCAAACATCAT 57.879 29.630 0.00 0.00 41.94 2.45
417 418 8.500753 ACGGAGTATATTAAAAGCAAACATCA 57.499 30.769 0.00 0.00 41.94 3.07
437 438 4.120589 GTTTCCCTCAGCTTTATACGGAG 58.879 47.826 0.00 0.00 0.00 4.63
438 439 3.118519 GGTTTCCCTCAGCTTTATACGGA 60.119 47.826 0.00 0.00 0.00 4.69
439 440 3.203716 GGTTTCCCTCAGCTTTATACGG 58.796 50.000 0.00 0.00 0.00 4.02
440 441 3.203716 GGGTTTCCCTCAGCTTTATACG 58.796 50.000 0.00 0.00 41.34 3.06
453 454 3.440522 CGATTGAAGAGAAAGGGTTTCCC 59.559 47.826 0.00 0.00 45.90 3.97
454 455 3.440522 CCGATTGAAGAGAAAGGGTTTCC 59.559 47.826 0.00 0.00 40.54 3.13
455 456 3.440522 CCCGATTGAAGAGAAAGGGTTTC 59.559 47.826 0.00 0.00 39.96 2.78
456 457 3.073946 TCCCGATTGAAGAGAAAGGGTTT 59.926 43.478 0.00 0.00 38.52 3.27
457 458 2.642807 TCCCGATTGAAGAGAAAGGGTT 59.357 45.455 0.00 0.00 38.52 4.11
458 459 2.266279 TCCCGATTGAAGAGAAAGGGT 58.734 47.619 0.00 0.00 38.52 4.34
459 460 3.350219 TTCCCGATTGAAGAGAAAGGG 57.650 47.619 0.00 0.00 38.73 3.95
460 461 5.461526 GTTTTTCCCGATTGAAGAGAAAGG 58.538 41.667 0.00 0.00 0.00 3.11
461 462 5.241728 AGGTTTTTCCCGATTGAAGAGAAAG 59.758 40.000 0.00 0.00 36.75 2.62
462 463 5.137551 AGGTTTTTCCCGATTGAAGAGAAA 58.862 37.500 0.00 0.00 36.75 2.52
463 464 4.725490 AGGTTTTTCCCGATTGAAGAGAA 58.275 39.130 0.00 0.00 36.75 2.87
464 465 4.367039 AGGTTTTTCCCGATTGAAGAGA 57.633 40.909 0.00 0.00 36.75 3.10
465 466 5.453567 AAAGGTTTTTCCCGATTGAAGAG 57.546 39.130 0.00 0.00 36.75 2.85
466 467 4.023536 CGAAAGGTTTTTCCCGATTGAAGA 60.024 41.667 0.00 0.00 39.63 2.87
467 468 4.226761 CGAAAGGTTTTTCCCGATTGAAG 58.773 43.478 0.00 0.00 39.63 3.02
468 469 3.633065 ACGAAAGGTTTTTCCCGATTGAA 59.367 39.130 0.00 0.00 39.63 2.69
469 470 3.215975 ACGAAAGGTTTTTCCCGATTGA 58.784 40.909 0.00 0.00 39.63 2.57
470 471 3.636282 ACGAAAGGTTTTTCCCGATTG 57.364 42.857 0.00 0.00 39.63 2.67
471 472 4.659111 AAACGAAAGGTTTTTCCCGATT 57.341 36.364 0.00 0.00 46.52 3.34
504 505 9.743057 CGAATTCTACTTCTTCATTGTAGATCT 57.257 33.333 0.00 0.00 41.21 2.75
505 506 9.522804 ACGAATTCTACTTCTTCATTGTAGATC 57.477 33.333 3.52 0.00 41.21 2.75
506 507 9.307121 CACGAATTCTACTTCTTCATTGTAGAT 57.693 33.333 3.52 0.00 41.21 1.98
507 508 7.759886 CCACGAATTCTACTTCTTCATTGTAGA 59.240 37.037 3.52 0.00 40.29 2.59
508 509 7.010552 CCCACGAATTCTACTTCTTCATTGTAG 59.989 40.741 3.52 0.00 36.09 2.74
509 510 6.816640 CCCACGAATTCTACTTCTTCATTGTA 59.183 38.462 3.52 0.00 0.00 2.41
510 511 5.643777 CCCACGAATTCTACTTCTTCATTGT 59.356 40.000 3.52 0.00 0.00 2.71
511 512 5.065218 CCCCACGAATTCTACTTCTTCATTG 59.935 44.000 3.52 0.00 0.00 2.82
512 513 5.045869 TCCCCACGAATTCTACTTCTTCATT 60.046 40.000 3.52 0.00 0.00 2.57
513 514 4.469945 TCCCCACGAATTCTACTTCTTCAT 59.530 41.667 3.52 0.00 0.00 2.57
514 515 3.835978 TCCCCACGAATTCTACTTCTTCA 59.164 43.478 3.52 0.00 0.00 3.02
515 516 4.081586 AGTCCCCACGAATTCTACTTCTTC 60.082 45.833 3.52 0.00 0.00 2.87
516 517 3.838903 AGTCCCCACGAATTCTACTTCTT 59.161 43.478 3.52 0.00 0.00 2.52
517 518 3.195825 CAGTCCCCACGAATTCTACTTCT 59.804 47.826 3.52 0.00 0.00 2.85
518 519 3.194968 TCAGTCCCCACGAATTCTACTTC 59.805 47.826 3.52 0.00 0.00 3.01
519 520 3.170717 TCAGTCCCCACGAATTCTACTT 58.829 45.455 3.52 0.00 0.00 2.24
520 521 2.761208 CTCAGTCCCCACGAATTCTACT 59.239 50.000 3.52 0.00 0.00 2.57
521 522 2.758979 TCTCAGTCCCCACGAATTCTAC 59.241 50.000 3.52 0.00 0.00 2.59
522 523 3.024547 CTCTCAGTCCCCACGAATTCTA 58.975 50.000 3.52 0.00 0.00 2.10
523 524 1.827969 CTCTCAGTCCCCACGAATTCT 59.172 52.381 3.52 0.00 0.00 2.40
524 525 1.550976 ACTCTCAGTCCCCACGAATTC 59.449 52.381 0.00 0.00 0.00 2.17
525 526 1.276421 CACTCTCAGTCCCCACGAATT 59.724 52.381 0.00 0.00 0.00 2.17
526 527 0.898320 CACTCTCAGTCCCCACGAAT 59.102 55.000 0.00 0.00 0.00 3.34
527 528 0.469331 ACACTCTCAGTCCCCACGAA 60.469 55.000 0.00 0.00 0.00 3.85
528 529 0.894184 GACACTCTCAGTCCCCACGA 60.894 60.000 0.00 0.00 0.00 4.35
529 530 0.896019 AGACACTCTCAGTCCCCACG 60.896 60.000 0.00 0.00 36.68 4.94
530 531 1.343069 AAGACACTCTCAGTCCCCAC 58.657 55.000 0.00 0.00 36.68 4.61
531 532 2.103153 AAAGACACTCTCAGTCCCCA 57.897 50.000 0.00 0.00 36.68 4.96
532 533 4.563786 CCTTTAAAGACACTCTCAGTCCCC 60.564 50.000 16.98 0.00 36.68 4.81
533 534 4.563786 CCCTTTAAAGACACTCTCAGTCCC 60.564 50.000 16.98 0.00 36.68 4.46
534 535 4.283722 TCCCTTTAAAGACACTCTCAGTCC 59.716 45.833 16.98 0.00 36.68 3.85
535 536 5.470047 TCCCTTTAAAGACACTCTCAGTC 57.530 43.478 16.98 0.00 36.26 3.51
536 537 5.888982 TTCCCTTTAAAGACACTCTCAGT 57.111 39.130 16.98 0.00 0.00 3.41
537 538 6.292919 CGTTTTCCCTTTAAAGACACTCTCAG 60.293 42.308 16.98 0.00 0.00 3.35
538 539 5.526111 CGTTTTCCCTTTAAAGACACTCTCA 59.474 40.000 16.98 0.00 0.00 3.27
539 540 5.526479 ACGTTTTCCCTTTAAAGACACTCTC 59.474 40.000 16.98 1.42 0.00 3.20
540 541 5.434408 ACGTTTTCCCTTTAAAGACACTCT 58.566 37.500 16.98 0.00 0.00 3.24
541 542 5.295045 TGACGTTTTCCCTTTAAAGACACTC 59.705 40.000 16.98 4.74 0.00 3.51
542 543 5.065602 GTGACGTTTTCCCTTTAAAGACACT 59.934 40.000 16.98 0.00 0.00 3.55
543 544 5.268544 GTGACGTTTTCCCTTTAAAGACAC 58.731 41.667 16.98 2.28 0.00 3.67
544 545 4.336153 GGTGACGTTTTCCCTTTAAAGACA 59.664 41.667 16.98 0.00 0.00 3.41
545 546 4.336153 TGGTGACGTTTTCCCTTTAAAGAC 59.664 41.667 16.98 5.44 0.00 3.01
546 547 4.525024 TGGTGACGTTTTCCCTTTAAAGA 58.475 39.130 16.98 0.00 0.00 2.52
547 548 4.904253 TGGTGACGTTTTCCCTTTAAAG 57.096 40.909 8.32 8.32 0.00 1.85
548 549 4.500035 GCATGGTGACGTTTTCCCTTTAAA 60.500 41.667 0.00 0.00 0.00 1.52
549 550 3.004944 GCATGGTGACGTTTTCCCTTTAA 59.995 43.478 0.00 0.00 0.00 1.52
550 551 2.554893 GCATGGTGACGTTTTCCCTTTA 59.445 45.455 0.00 0.00 0.00 1.85
551 552 1.339929 GCATGGTGACGTTTTCCCTTT 59.660 47.619 0.00 0.00 0.00 3.11
552 553 0.958822 GCATGGTGACGTTTTCCCTT 59.041 50.000 0.00 0.00 0.00 3.95
553 554 0.893727 GGCATGGTGACGTTTTCCCT 60.894 55.000 0.00 0.00 0.00 4.20
554 555 1.175983 TGGCATGGTGACGTTTTCCC 61.176 55.000 0.00 0.00 0.00 3.97
555 556 0.671251 TTGGCATGGTGACGTTTTCC 59.329 50.000 0.00 0.00 0.00 3.13
556 557 1.606668 TCTTGGCATGGTGACGTTTTC 59.393 47.619 0.00 0.00 0.00 2.29
557 558 1.686355 TCTTGGCATGGTGACGTTTT 58.314 45.000 0.00 0.00 0.00 2.43
558 559 1.608590 CTTCTTGGCATGGTGACGTTT 59.391 47.619 0.00 0.00 0.00 3.60
559 560 1.202758 TCTTCTTGGCATGGTGACGTT 60.203 47.619 0.00 0.00 0.00 3.99
560 561 0.396435 TCTTCTTGGCATGGTGACGT 59.604 50.000 0.00 0.00 0.00 4.34
561 562 1.081892 CTCTTCTTGGCATGGTGACG 58.918 55.000 0.00 0.00 0.00 4.35
562 563 2.191128 ACTCTTCTTGGCATGGTGAC 57.809 50.000 0.00 0.00 0.00 3.67
563 564 4.574674 AATACTCTTCTTGGCATGGTGA 57.425 40.909 0.00 0.00 0.00 4.02
564 565 6.404734 GGTTAAATACTCTTCTTGGCATGGTG 60.405 42.308 0.00 0.00 0.00 4.17
565 566 5.652452 GGTTAAATACTCTTCTTGGCATGGT 59.348 40.000 0.00 0.00 0.00 3.55
566 567 5.652014 TGGTTAAATACTCTTCTTGGCATGG 59.348 40.000 0.00 0.00 0.00 3.66
567 568 6.757897 TGGTTAAATACTCTTCTTGGCATG 57.242 37.500 0.00 0.00 0.00 4.06
568 569 7.775053 TTTGGTTAAATACTCTTCTTGGCAT 57.225 32.000 0.00 0.00 0.00 4.40
569 570 7.589958 TTTTGGTTAAATACTCTTCTTGGCA 57.410 32.000 0.00 0.00 0.00 4.92
570 571 8.141909 AGTTTTTGGTTAAATACTCTTCTTGGC 58.858 33.333 0.00 0.00 34.37 4.52
574 575 9.856162 TGGTAGTTTTTGGTTAAATACTCTTCT 57.144 29.630 0.00 0.00 38.47 2.85
575 576 9.888878 GTGGTAGTTTTTGGTTAAATACTCTTC 57.111 33.333 0.00 0.00 38.47 2.87
657 658 3.004944 GCCACGGTTTAGTCCAAATTTGA 59.995 43.478 19.86 3.14 0.00 2.69
1257 1259 4.039609 CCTTCAAAAGCCACCATCTTCTTT 59.960 41.667 0.00 0.00 0.00 2.52
1323 1325 8.995220 ACAAGTTAGCGTTCAAGATTTAATACA 58.005 29.630 0.00 0.00 0.00 2.29
1978 2060 2.356125 GCTTGGCCACCTCTTTCTCATA 60.356 50.000 3.88 0.00 0.00 2.15
2376 2458 6.971184 CACTTCACTCATTCATAATTGCCTTC 59.029 38.462 0.00 0.00 0.00 3.46
2497 2585 2.694397 CTCCCTCCCTCATACCATTCA 58.306 52.381 0.00 0.00 0.00 2.57
3275 3429 3.257935 CTCTGACGACTCTGAGGGT 57.742 57.895 9.85 6.49 38.32 4.34
3313 3467 3.082579 GCCTACTGGGAGTGGAGCG 62.083 68.421 0.00 0.00 37.23 5.03
3316 3470 2.443781 ACGCCTACTGGGAGTGGA 59.556 61.111 0.00 0.00 46.24 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.