Multiple sequence alignment - TraesCS3B01G091200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G091200 chr3B 100.000 9080 0 0 1 9080 60263160 60254081 0.000000e+00 16768.0
1 TraesCS3B01G091200 chr3B 90.698 215 20 0 362 576 764097744 764097958 4.150000e-73 287.0
2 TraesCS3B01G091200 chr3B 95.833 96 2 2 3412 3506 60259655 60259749 4.390000e-33 154.0
3 TraesCS3B01G091200 chr3B 95.455 66 3 0 302 367 764097546 764097611 1.250000e-18 106.0
4 TraesCS3B01G091200 chr3D 92.207 5415 281 57 577 5924 37763720 37758380 0.000000e+00 7531.0
5 TraesCS3B01G091200 chr3D 94.375 1849 90 8 6035 7875 37757825 37755983 0.000000e+00 2826.0
6 TraesCS3B01G091200 chr3D 92.352 523 26 9 8553 9072 37755192 37754681 0.000000e+00 732.0
7 TraesCS3B01G091200 chr3D 86.579 611 45 16 7905 8507 37755989 37755408 2.760000e-179 640.0
8 TraesCS3B01G091200 chr3D 90.566 106 7 2 3403 3506 375212372 375212268 4.420000e-28 137.0
9 TraesCS3B01G091200 chr3A 92.986 2880 116 31 577 3434 47833717 47830902 0.000000e+00 4120.0
10 TraesCS3B01G091200 chr3A 90.270 2477 182 29 3485 5924 47830901 47828447 0.000000e+00 3184.0
11 TraesCS3B01G091200 chr3A 95.091 1324 50 7 6035 7354 47827890 47826578 0.000000e+00 2071.0
12 TraesCS3B01G091200 chr3A 89.358 639 51 7 7906 8541 47825778 47825154 0.000000e+00 787.0
13 TraesCS3B01G091200 chr3A 92.952 525 21 11 8555 9072 47825002 47824487 0.000000e+00 750.0
14 TraesCS3B01G091200 chr3A 88.577 534 35 9 7359 7883 47826287 47825771 7.740000e-175 625.0
15 TraesCS3B01G091200 chr3A 85.484 310 32 9 5580 5880 565330926 565331231 2.460000e-80 311.0
16 TraesCS3B01G091200 chr3A 91.089 101 9 0 3410 3510 661792740 661792640 4.420000e-28 137.0
17 TraesCS3B01G091200 chr6B 84.637 2096 214 48 672 2723 157596846 157598877 0.000000e+00 1988.0
18 TraesCS3B01G091200 chr6B 87.266 1445 134 35 3507 4922 157600586 157602009 0.000000e+00 1604.0
19 TraesCS3B01G091200 chr6B 85.763 1180 113 21 5977 7143 157603061 157604198 0.000000e+00 1197.0
20 TraesCS3B01G091200 chr6B 86.820 956 101 13 5001 5941 157602030 157602975 0.000000e+00 1044.0
21 TraesCS3B01G091200 chr6B 80.528 606 94 15 7211 7804 157604988 157605581 2.330000e-120 444.0
22 TraesCS3B01G091200 chr6A 84.011 2089 231 53 672 2723 99195642 99197664 0.000000e+00 1912.0
23 TraesCS3B01G091200 chr6A 87.430 1432 137 35 3507 4915 99199392 99200803 0.000000e+00 1607.0
24 TraesCS3B01G091200 chr6A 87.625 897 73 14 6253 7143 99202291 99203155 0.000000e+00 1007.0
25 TraesCS3B01G091200 chr6A 86.192 956 101 14 5001 5941 99200831 99201770 0.000000e+00 1005.0
26 TraesCS3B01G091200 chr6A 80.560 607 92 13 7211 7804 99203953 99204546 2.330000e-120 444.0
27 TraesCS3B01G091200 chr6A 79.764 593 61 30 2727 3283 99197734 99198303 8.610000e-100 375.0
28 TraesCS3B01G091200 chr6A 86.517 267 29 4 5977 6237 99201855 99202120 4.150000e-73 287.0
29 TraesCS3B01G091200 chr6A 93.333 45 3 0 3369 3413 99199341 99199385 5.880000e-07 67.6
30 TraesCS3B01G091200 chr6D 87.103 1450 135 37 3507 4922 82580222 82581653 0.000000e+00 1594.0
31 TraesCS3B01G091200 chr6D 87.268 1131 115 21 5977 7088 82582704 82583824 0.000000e+00 1264.0
32 TraesCS3B01G091200 chr6D 87.120 955 99 12 5001 5941 82581674 82582618 0.000000e+00 1061.0
33 TraesCS3B01G091200 chr6D 84.501 942 98 19 1185 2095 82576976 82577900 0.000000e+00 887.0
34 TraesCS3B01G091200 chr6D 91.245 514 45 0 2177 2690 82578108 82578621 0.000000e+00 701.0
35 TraesCS3B01G091200 chr6D 84.119 636 81 12 7151 7773 82584785 82585413 1.690000e-166 597.0
36 TraesCS3B01G091200 chr6D 79.412 646 68 32 2735 3368 82578627 82579219 6.610000e-106 396.0
37 TraesCS3B01G091200 chr5B 98.443 578 9 0 1 578 29366254 29365677 0.000000e+00 1018.0
38 TraesCS3B01G091200 chr5B 92.627 217 16 0 362 578 633259705 633259921 6.840000e-81 313.0
39 TraesCS3B01G091200 chr5B 93.814 97 6 0 3410 3506 164398762 164398666 7.350000e-31 147.0
40 TraesCS3B01G091200 chr2B 86.319 307 29 9 5583 5880 138122518 138122216 1.140000e-83 322.0
41 TraesCS3B01G091200 chr2A 92.342 222 16 1 356 576 52764652 52764873 1.900000e-81 315.0
42 TraesCS3B01G091200 chr2A 89.767 215 16 3 158 367 52764345 52764558 4.180000e-68 270.0
43 TraesCS3B01G091200 chr2A 89.623 106 10 1 3407 3512 657520834 657520730 5.720000e-27 134.0
44 TraesCS3B01G091200 chr7B 85.668 307 31 9 5583 5880 73925270 73924968 2.460000e-80 311.0
45 TraesCS3B01G091200 chr7B 92.157 102 4 4 3410 3510 13866710 13866612 3.420000e-29 141.0
46 TraesCS3B01G091200 chr7B 92.857 98 6 1 3407 3504 569937874 569937970 3.420000e-29 141.0
47 TraesCS3B01G091200 chr1D 91.304 230 17 2 356 582 19528866 19528637 2.460000e-80 311.0
48 TraesCS3B01G091200 chr1D 91.892 222 17 1 356 576 46360645 46360424 8.850000e-80 309.0
49 TraesCS3B01G091200 chr1D 89.604 202 15 3 171 367 46360932 46360732 1.510000e-62 252.0
50 TraesCS3B01G091200 chr1A 85.065 308 31 10 5583 5880 111989100 111988798 5.330000e-77 300.0
51 TraesCS3B01G091200 chr1B 89.912 228 21 2 362 589 593227462 593227237 8.920000e-75 292.0
52 TraesCS3B01G091200 chr1B 93.939 66 4 0 302 367 593227660 593227595 5.800000e-17 100.0
53 TraesCS3B01G091200 chr5A 93.814 97 6 0 3410 3506 533944284 533944188 7.350000e-31 147.0
54 TraesCS3B01G091200 chr5A 78.824 170 35 1 404 572 575905340 575905509 7.450000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G091200 chr3B 60254081 60263160 9079 True 16768.000000 16768 100.00000 1 9080 1 chr3B.!!$R1 9079
1 TraesCS3B01G091200 chr3D 37754681 37763720 9039 True 2932.250000 7531 91.37825 577 9072 4 chr3D.!!$R2 8495
2 TraesCS3B01G091200 chr3A 47824487 47833717 9230 True 1922.833333 4120 91.53900 577 9072 6 chr3A.!!$R2 8495
3 TraesCS3B01G091200 chr6B 157596846 157605581 8735 False 1255.400000 1988 85.00280 672 7804 5 chr6B.!!$F1 7132
4 TraesCS3B01G091200 chr6A 99195642 99204546 8904 False 838.075000 1912 85.67900 672 7804 8 chr6A.!!$F1 7132
5 TraesCS3B01G091200 chr6D 82576976 82585413 8437 False 928.571429 1594 85.82400 1185 7773 7 chr6D.!!$F1 6588
6 TraesCS3B01G091200 chr5B 29365677 29366254 577 True 1018.000000 1018 98.44300 1 578 1 chr5B.!!$R1 577
7 TraesCS3B01G091200 chr2A 52764345 52764873 528 False 292.500000 315 91.05450 158 576 2 chr2A.!!$F1 418
8 TraesCS3B01G091200 chr1D 46360424 46360932 508 True 280.500000 309 90.74800 171 576 2 chr1D.!!$R2 405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 946 0.253894 GCCATACCGGGTGTTAGGTT 59.746 55.000 10.66 0.00 41.63 3.50 F
1674 1838 0.036010 CTCTTGGCGTGATTCCTGGT 60.036 55.000 0.00 0.00 0.00 4.00 F
2389 2704 0.255318 CTTGGGCTCTGGAGATTGCT 59.745 55.000 1.35 0.00 0.00 3.91 F
3175 3635 0.947960 TGCATGTGTTTGGTGTACCG 59.052 50.000 0.00 0.00 39.43 4.02 F
3779 5216 0.611200 CCGTCATTGGTGGTGGTCTA 59.389 55.000 0.00 0.00 0.00 2.59 F
5433 6927 0.723981 CTTGCTTACTGAGAAGGCGC 59.276 55.000 0.00 0.00 0.00 6.53 F
6192 8187 1.003580 TGTGCCTTAGCTAGCTTGCTT 59.996 47.619 27.19 11.93 43.74 3.91 F
6193 8188 1.399791 GTGCCTTAGCTAGCTTGCTTG 59.600 52.381 27.19 18.96 43.74 4.01 F
7901 11435 1.074566 TGTGGTAATGGTGTGATGGCA 59.925 47.619 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2278 0.610687 ACAGCTAGGACTCAAGGCAC 59.389 55.000 0.00 0.00 0.00 5.01 R
2904 3346 0.685131 TGATGCCAAATGGAGCCCAG 60.685 55.000 2.98 0.00 36.75 4.45 R
3607 5044 0.877071 AATGACGTCCTTGCAGCAAG 59.123 50.000 26.03 26.03 40.75 4.01 R
4953 6423 0.392706 TCCGCGCATAGATGTTCCAT 59.607 50.000 8.75 0.00 0.00 3.41 R
5621 7115 1.338579 ACTAGAAGCTGAGCACCTTGC 60.339 52.381 7.39 0.00 45.46 4.01 R
7372 10886 0.923358 ACCACCACACCTCCTTCAAA 59.077 50.000 0.00 0.00 0.00 2.69 R
7901 11435 0.032615 TGTGGTGGCCAGGAACTTTT 60.033 50.000 5.11 0.00 34.60 2.27 R
7902 11436 0.188342 ATGTGGTGGCCAGGAACTTT 59.812 50.000 5.11 0.00 34.60 2.66 R
8764 12486 3.138884 TGGTTAGCATCATGTGTGTGT 57.861 42.857 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
379 491 3.062466 CGCAGAGGTCGAGTCCCA 61.062 66.667 0.00 0.00 0.00 4.37
482 594 2.874701 CAAGCTATACTGCTCGCCATTT 59.125 45.455 0.00 0.00 43.24 2.32
637 749 6.360681 GCCATCGTATCATTTTATTTGTGCTC 59.639 38.462 0.00 0.00 0.00 4.26
650 762 1.451028 GTGCTCATCCCAGTCAGCC 60.451 63.158 0.00 0.00 0.00 4.85
739 851 7.592439 AAATAGTTAACTGAAGTACGAAGGC 57.408 36.000 18.56 0.00 0.00 4.35
819 944 1.227438 CGCCATACCGGGTGTTAGG 60.227 63.158 10.66 7.26 33.70 2.69
821 946 0.253894 GCCATACCGGGTGTTAGGTT 59.746 55.000 10.66 0.00 41.63 3.50
822 947 1.340308 GCCATACCGGGTGTTAGGTTT 60.340 52.381 10.66 0.00 41.63 3.27
823 948 2.635714 CCATACCGGGTGTTAGGTTTC 58.364 52.381 10.66 0.00 41.63 2.78
824 949 2.237893 CCATACCGGGTGTTAGGTTTCT 59.762 50.000 10.66 0.00 41.63 2.52
825 950 3.451902 CCATACCGGGTGTTAGGTTTCTA 59.548 47.826 10.66 0.00 41.63 2.10
887 1015 4.067896 GGAAGACATGTATGGTGCTATGG 58.932 47.826 0.00 0.00 0.00 2.74
1138 1270 4.618920 AAAGTTCATGAGACCGGTAAGT 57.381 40.909 7.34 0.00 0.00 2.24
1211 1343 5.705609 TTTTAGGCCAATCTGTTCTGTTC 57.294 39.130 5.01 0.00 0.00 3.18
1245 1384 0.109597 CATGGTTTTGCAGGAGACGC 60.110 55.000 0.00 0.00 0.00 5.19
1373 1516 5.586643 GGAACTCTTTAGGCACCTCTAATTG 59.413 44.000 0.00 0.00 0.00 2.32
1409 1552 4.706476 TGAAATCTGGGCCTGATTGTAAAG 59.294 41.667 31.49 7.35 33.51 1.85
1505 1648 6.402222 AGAGTTGACTATGGTCTGTCATTTC 58.598 40.000 10.82 0.00 41.93 2.17
1674 1838 0.036010 CTCTTGGCGTGATTCCTGGT 60.036 55.000 0.00 0.00 0.00 4.00
1687 1851 2.586792 CTGGTGCTGGAGGTAGGC 59.413 66.667 0.00 0.00 0.00 3.93
1737 1902 7.499232 ACAGTTTGAACTACTGCTCTTATTTGT 59.501 33.333 0.00 0.00 45.38 2.83
1914 2079 4.095483 GCTGTGGTCAGATAAACTTCATGG 59.905 45.833 0.00 0.00 43.76 3.66
1989 2156 6.756542 AGTGAAAACCAATTTTAAGTGAGTGC 59.243 34.615 0.00 0.00 38.17 4.40
2102 2269 9.132521 GAATCTCATTTCAAACTGTAAACATGG 57.867 33.333 0.00 0.00 0.00 3.66
2105 2272 7.446931 TCTCATTTCAAACTGTAAACATGGCTA 59.553 33.333 0.00 0.00 0.00 3.93
2106 2273 7.946207 TCATTTCAAACTGTAAACATGGCTAA 58.054 30.769 0.00 0.00 0.00 3.09
2107 2274 8.081633 TCATTTCAAACTGTAAACATGGCTAAG 58.918 33.333 0.00 0.00 0.00 2.18
2108 2275 6.952773 TTCAAACTGTAAACATGGCTAAGT 57.047 33.333 0.00 0.00 0.00 2.24
2109 2276 6.312399 TCAAACTGTAAACATGGCTAAGTG 57.688 37.500 0.00 0.00 0.00 3.16
2111 2278 6.204688 TCAAACTGTAAACATGGCTAAGTGAG 59.795 38.462 0.00 0.00 0.00 3.51
2112 2279 5.228945 ACTGTAAACATGGCTAAGTGAGT 57.771 39.130 0.00 0.00 0.00 3.41
2113 2280 4.997395 ACTGTAAACATGGCTAAGTGAGTG 59.003 41.667 0.00 0.00 0.00 3.51
2114 2281 3.751175 TGTAAACATGGCTAAGTGAGTGC 59.249 43.478 0.00 0.00 0.00 4.40
2115 2282 1.826385 AACATGGCTAAGTGAGTGCC 58.174 50.000 0.00 0.00 46.26 5.01
2116 2283 0.987294 ACATGGCTAAGTGAGTGCCT 59.013 50.000 0.00 0.00 46.23 4.75
2117 2284 1.352352 ACATGGCTAAGTGAGTGCCTT 59.648 47.619 0.00 0.00 46.23 4.35
2118 2285 1.741706 CATGGCTAAGTGAGTGCCTTG 59.258 52.381 0.00 0.00 46.23 3.61
2119 2286 1.055849 TGGCTAAGTGAGTGCCTTGA 58.944 50.000 0.00 0.00 46.23 3.02
2120 2287 1.002430 TGGCTAAGTGAGTGCCTTGAG 59.998 52.381 0.00 0.00 46.23 3.02
2121 2288 1.002544 GGCTAAGTGAGTGCCTTGAGT 59.997 52.381 0.00 0.00 43.05 3.41
2122 2289 2.342179 GCTAAGTGAGTGCCTTGAGTC 58.658 52.381 0.00 0.00 0.00 3.36
2123 2290 2.933056 GCTAAGTGAGTGCCTTGAGTCC 60.933 54.545 0.00 0.00 0.00 3.85
2124 2291 1.428869 AAGTGAGTGCCTTGAGTCCT 58.571 50.000 0.00 0.00 0.00 3.85
2125 2292 2.310779 AGTGAGTGCCTTGAGTCCTA 57.689 50.000 0.00 0.00 0.00 2.94
2126 2293 2.175202 AGTGAGTGCCTTGAGTCCTAG 58.825 52.381 0.00 0.00 0.00 3.02
2127 2294 0.898320 TGAGTGCCTTGAGTCCTAGC 59.102 55.000 0.00 0.00 0.00 3.42
2149 2316 4.150627 GCTGTATGTAGCACCGAACATATG 59.849 45.833 0.00 0.00 43.17 1.78
2294 2609 3.850273 GCTTCAGCAATCGAAGTTCATTG 59.150 43.478 16.98 16.98 41.61 2.82
2389 2704 0.255318 CTTGGGCTCTGGAGATTGCT 59.745 55.000 1.35 0.00 0.00 3.91
2480 2795 5.293324 CGTGCTGTATTAAGTATGGCAAGAA 59.707 40.000 0.00 0.00 31.58 2.52
2490 2805 2.450609 ATGGCAAGAAAGCAAGCAAG 57.549 45.000 0.00 0.00 35.83 4.01
2493 2808 2.294233 TGGCAAGAAAGCAAGCAAGTAG 59.706 45.455 0.00 0.00 35.83 2.57
2699 3015 7.859325 ACTTCTAGAGCTTAGACTAGTCTTG 57.141 40.000 29.57 22.00 40.93 3.02
2769 3180 9.511272 TGATTCAGTAATTGCTGATAAGCATAT 57.489 29.630 24.30 14.07 43.99 1.78
2851 3293 4.864726 AGATTCCTTAGCTCATTTTGGCT 58.135 39.130 0.00 0.00 41.92 4.75
2904 3346 3.134458 GGTATCACTGCTCTGCATAACC 58.866 50.000 0.00 0.00 38.13 2.85
2933 3379 3.874543 CCATTTGGCATCATGTTGGATTG 59.125 43.478 5.93 0.00 0.00 2.67
2962 3415 9.686683 ATAATCCAGCTTATCTACACAGTTTTT 57.313 29.630 0.00 0.00 0.00 1.94
3028 3483 1.663161 GCGGTTTTTGTAGCAGCAGAC 60.663 52.381 0.00 0.00 0.00 3.51
3029 3484 1.601903 CGGTTTTTGTAGCAGCAGACA 59.398 47.619 0.00 0.00 0.00 3.41
3175 3635 0.947960 TGCATGTGTTTGGTGTACCG 59.052 50.000 0.00 0.00 39.43 4.02
3232 3692 4.780554 TGGTAGTATCAACCACATCAAGGA 59.219 41.667 0.00 0.00 42.10 3.36
3337 3797 6.317789 TCCTGATTCACTTTTCATGTGTTC 57.682 37.500 0.00 0.00 36.83 3.18
3458 4890 9.079833 GTGTCGCTGATTTAGTACAAAGTTATA 57.920 33.333 0.00 0.00 0.00 0.98
3459 4891 9.811995 TGTCGCTGATTTAGTACAAAGTTATAT 57.188 29.630 0.00 0.00 0.00 0.86
3508 4941 3.628832 TTTTGGGATGGAGGGAGTTTT 57.371 42.857 0.00 0.00 0.00 2.43
3519 4952 4.847512 TGGAGGGAGTTTTACTAACCATGA 59.152 41.667 0.00 0.00 30.30 3.07
3761 5198 5.710567 ACCTAGGAACATAAGAAAAGTTGCC 59.289 40.000 17.98 0.00 34.64 4.52
3764 5201 4.215613 AGGAACATAAGAAAAGTTGCCGTC 59.784 41.667 0.00 0.00 34.64 4.79
3779 5216 0.611200 CCGTCATTGGTGGTGGTCTA 59.389 55.000 0.00 0.00 0.00 2.59
3917 5354 5.012664 TGAAACTACTGTAGCATTTCCTGGA 59.987 40.000 19.72 0.00 0.00 3.86
3923 5360 6.272822 ACTGTAGCATTTCCTGGAATTTTC 57.727 37.500 10.45 1.71 0.00 2.29
4098 5535 3.054139 TGAGCAAGGCCATATCACTTCTT 60.054 43.478 5.01 0.00 0.00 2.52
4243 5683 5.913514 GTGAAGCAGATATTCATGACATTGC 59.086 40.000 0.00 1.85 38.81 3.56
4246 5686 4.023107 AGCAGATATTCATGACATTGCAGC 60.023 41.667 15.09 7.12 33.00 5.25
4273 5714 7.639945 CATTAACGAATCTTATGAAGGTTCCC 58.360 38.462 6.63 0.00 44.07 3.97
4289 5730 9.486123 TGAAGGTTCCCATTAAAATGATTATGA 57.514 29.630 4.25 0.00 38.70 2.15
4355 5796 6.791867 ACATAAGTCACATAGCACTTAGGA 57.208 37.500 10.00 0.00 38.56 2.94
4360 5811 6.210287 AGTCACATAGCACTTAGGACTTAC 57.790 41.667 0.00 0.00 30.53 2.34
4372 5823 6.418226 CACTTAGGACTTACGCATATGTTCTC 59.582 42.308 4.29 0.00 29.29 2.87
4577 6029 4.650972 TCTTGTGGGTTATGGTTTAGCT 57.349 40.909 0.00 0.00 0.00 3.32
4593 6047 2.191128 AGCTCTTCCTGAAAACGCAT 57.809 45.000 0.00 0.00 0.00 4.73
4637 6091 6.582636 CACTTAGGACTTATGCATCAAGGTA 58.417 40.000 0.19 0.00 0.00 3.08
4656 6117 3.369892 GGTAGCTGGAACACATCACATCT 60.370 47.826 0.00 0.00 0.00 2.90
4662 6123 6.765036 AGCTGGAACACATCACATCTATAAAG 59.235 38.462 0.00 0.00 0.00 1.85
4668 6129 9.546909 GAACACATCACATCTATAAAGTTTGTG 57.453 33.333 0.00 0.00 38.33 3.33
4675 6136 9.554395 TCACATCTATAAAGTTTGTGAACAGAA 57.446 29.630 3.83 0.00 40.57 3.02
4694 6156 7.559590 ACAGAAGCATGTAACTATCAAATCC 57.440 36.000 0.00 0.00 0.00 3.01
4698 6160 6.949352 AGCATGTAACTATCAAATCCTTGG 57.051 37.500 0.00 0.00 33.01 3.61
4709 6171 3.953612 TCAAATCCTTGGCACCATACATC 59.046 43.478 0.00 0.00 33.01 3.06
4721 6183 5.034152 GCACCATACATCACCAATTTAACG 58.966 41.667 0.00 0.00 0.00 3.18
4725 6187 5.393569 CCATACATCACCAATTTAACGGCAA 60.394 40.000 0.00 0.00 0.00 4.52
4778 6240 7.177392 ACTTGTTCTTCATAGAAGGGAATTTGG 59.823 37.037 6.89 0.00 40.95 3.28
4801 6263 5.391629 GGTGGTTATGCTAAGTTGCTAACAC 60.392 44.000 0.00 0.00 33.01 3.32
4810 6272 6.764085 TGCTAAGTTGCTAACACTGAAGTTAA 59.236 34.615 0.00 0.00 33.89 2.01
4868 6336 8.568794 GCATGGAAGTTCCCTAATATTAAGTTC 58.431 37.037 19.42 7.36 35.03 3.01
4883 6353 8.937207 ATATTAAGTTCGTAGATGTAGGAGGT 57.063 34.615 0.00 0.00 35.04 3.85
4907 6377 5.650266 TGTGTTCTTGGTGTCAATTTACTGT 59.350 36.000 0.00 0.00 31.75 3.55
4966 6436 8.267620 TGAGTGTTGTTTATGGAACATCTATG 57.732 34.615 0.00 0.00 46.99 2.23
4967 6437 7.088589 AGTGTTGTTTATGGAACATCTATGC 57.911 36.000 0.00 0.00 46.99 3.14
4970 6440 4.260579 TTGTTTATGGAACATCTATGCGCG 60.261 41.667 0.00 0.00 46.99 6.86
4971 6441 4.436515 TGGAACATCTATGCGCGG 57.563 55.556 8.83 0.00 0.00 6.46
4999 6469 6.457528 GCATGACTTCTAGTTTATGCAGGTTC 60.458 42.308 17.52 0.00 42.95 3.62
5022 6496 9.313118 GTTCATTCAAACACAAAAGAATAACCT 57.687 29.630 0.00 0.00 0.00 3.50
5032 6506 8.799367 ACACAAAAGAATAACCTAACATAACCC 58.201 33.333 0.00 0.00 0.00 4.11
5033 6507 8.798402 CACAAAAGAATAACCTAACATAACCCA 58.202 33.333 0.00 0.00 0.00 4.51
5038 6512 9.936329 AAGAATAACCTAACATAACCCATTCAT 57.064 29.630 0.00 0.00 0.00 2.57
5186 6670 4.463539 TGATGTTTCCATGTCCCAAATGAG 59.536 41.667 0.00 0.00 0.00 2.90
5202 6686 0.829990 TGAGATGTGGCCGATTGCTA 59.170 50.000 0.00 0.00 40.92 3.49
5262 6752 6.984474 TCATAAGGTAGTAGCTGTTGCAATAC 59.016 38.462 0.59 0.56 42.74 1.89
5275 6765 6.412072 GCTGTTGCAATACTTTCTTATAAGCG 59.588 38.462 0.59 1.75 39.41 4.68
5286 6776 8.788325 ACTTTCTTATAAGCGTCTATTTTGGT 57.212 30.769 7.67 0.00 0.00 3.67
5296 6787 4.035208 GCGTCTATTTTGGTGAGTTATGGG 59.965 45.833 0.00 0.00 0.00 4.00
5298 6789 5.878116 CGTCTATTTTGGTGAGTTATGGGAA 59.122 40.000 0.00 0.00 0.00 3.97
5299 6790 6.037172 CGTCTATTTTGGTGAGTTATGGGAAG 59.963 42.308 0.00 0.00 0.00 3.46
5300 6791 5.885912 TCTATTTTGGTGAGTTATGGGAAGC 59.114 40.000 0.00 0.00 0.00 3.86
5301 6792 3.806949 TTTGGTGAGTTATGGGAAGCT 57.193 42.857 0.00 0.00 0.00 3.74
5302 6793 4.919774 TTTGGTGAGTTATGGGAAGCTA 57.080 40.909 0.00 0.00 0.00 3.32
5305 6796 5.450818 TGGTGAGTTATGGGAAGCTATTT 57.549 39.130 0.00 0.00 0.00 1.40
5306 6797 5.437060 TGGTGAGTTATGGGAAGCTATTTC 58.563 41.667 0.00 0.00 34.93 2.17
5361 6855 5.772825 ACGGACATGGAATTATGGAAATG 57.227 39.130 0.00 0.00 32.32 2.32
5367 6861 7.502226 GGACATGGAATTATGGAAATGACACTA 59.498 37.037 0.00 0.00 32.32 2.74
5386 6880 7.608761 TGACACTACTTGAGTTTTACTGGTTTT 59.391 33.333 0.00 0.00 35.64 2.43
5433 6927 0.723981 CTTGCTTACTGAGAAGGCGC 59.276 55.000 0.00 0.00 0.00 6.53
5444 6938 1.064783 GAAGGCGCCTTGCTAATGC 59.935 57.895 44.71 24.84 45.43 3.56
5498 6992 1.974265 TGCTTGAAATTGTCCGGACA 58.026 45.000 33.23 33.23 39.98 4.02
5621 7115 5.789710 ATCGTACATTTTTCCCTTACACG 57.210 39.130 0.00 0.00 0.00 4.49
5708 7202 3.530260 GGCATGCCAATGGGACCG 61.530 66.667 32.08 0.00 35.59 4.79
5783 7279 5.921962 ATGGCCTCAAATTAAGTTCCTTC 57.078 39.130 3.32 0.00 0.00 3.46
5787 7283 5.106118 GGCCTCAAATTAAGTTCCTTCTGTC 60.106 44.000 0.00 0.00 0.00 3.51
5790 7286 7.363431 CCTCAAATTAAGTTCCTTCTGTCAAC 58.637 38.462 0.00 0.00 0.00 3.18
5905 7405 5.070823 AGGATAAATCAGATGCAACCCAT 57.929 39.130 0.00 0.00 36.70 4.00
5913 7413 3.087031 CAGATGCAACCCATTTCAGAGT 58.913 45.455 0.00 0.00 33.29 3.24
5944 7526 9.938280 TTAGTATAATATTATGGTCCACTGTGC 57.062 33.333 16.72 0.00 0.00 4.57
5956 7546 1.467883 CCACTGTGCGCATGTATTTGG 60.468 52.381 15.91 11.06 0.00 3.28
6159 8154 6.861065 TTAACTGACACTCAACCATCTTTC 57.139 37.500 0.00 0.00 0.00 2.62
6192 8187 1.003580 TGTGCCTTAGCTAGCTTGCTT 59.996 47.619 27.19 11.93 43.74 3.91
6193 8188 1.399791 GTGCCTTAGCTAGCTTGCTTG 59.600 52.381 27.19 18.96 43.74 4.01
6400 8559 3.517901 TCCGTTCTAGTGGATTTGATGGT 59.482 43.478 0.00 0.00 0.00 3.55
6475 8634 5.131475 GGGTTACAGTCAATAGGATGGGTTA 59.869 44.000 0.00 0.00 0.00 2.85
6688 8849 5.826208 GTGGAAAGGTTTCACTTCCTCTTTA 59.174 40.000 4.89 0.00 38.92 1.85
6883 9047 5.715753 TCATGGATGAAAATGTGGTGATCAA 59.284 36.000 0.00 0.00 33.08 2.57
7043 9207 7.621428 AAATGAGATGTACTGGTTGAGATTG 57.379 36.000 0.00 0.00 0.00 2.67
7062 9232 7.495606 TGAGATTGTACTGCTGGTTATATGTTG 59.504 37.037 0.00 0.00 0.00 3.33
7308 10536 5.132144 AACCTATAGTTCACCCAATGTAGGG 59.868 44.000 0.00 0.00 44.98 3.53
7349 10577 3.866651 AGTCCTCTGTGCAATGTGTATC 58.133 45.455 0.00 0.00 0.00 2.24
7737 11270 7.545615 CAGTGTATGACTTGCTTAACATAGACA 59.454 37.037 0.00 0.00 39.92 3.41
7753 11286 1.654220 ACAGTTGTGTCATTGCCGC 59.346 52.632 0.00 0.00 26.76 6.53
7805 11338 5.215160 CAATTTTCCTTCTGACCGTCAAAG 58.785 41.667 2.19 8.98 0.00 2.77
7815 11348 1.535462 GACCGTCAAAGGTGTGAATGG 59.465 52.381 0.00 0.00 46.09 3.16
7873 11407 3.179443 TCAGTCTTGTGTTGTCAGTCC 57.821 47.619 0.00 0.00 0.00 3.85
7882 11416 3.689161 TGTGTTGTCAGTCCTGTTTCTTG 59.311 43.478 0.00 0.00 0.00 3.02
7883 11417 3.689649 GTGTTGTCAGTCCTGTTTCTTGT 59.310 43.478 0.00 0.00 0.00 3.16
7884 11418 3.689161 TGTTGTCAGTCCTGTTTCTTGTG 59.311 43.478 0.00 0.00 0.00 3.33
7885 11419 2.917933 TGTCAGTCCTGTTTCTTGTGG 58.082 47.619 0.00 0.00 0.00 4.17
7886 11420 2.238646 TGTCAGTCCTGTTTCTTGTGGT 59.761 45.455 0.00 0.00 0.00 4.16
7887 11421 3.452990 TGTCAGTCCTGTTTCTTGTGGTA 59.547 43.478 0.00 0.00 0.00 3.25
7888 11422 4.080807 TGTCAGTCCTGTTTCTTGTGGTAA 60.081 41.667 0.00 0.00 0.00 2.85
7889 11423 5.063880 GTCAGTCCTGTTTCTTGTGGTAAT 58.936 41.667 0.00 0.00 0.00 1.89
7890 11424 5.049405 GTCAGTCCTGTTTCTTGTGGTAATG 60.049 44.000 0.00 0.00 0.00 1.90
7891 11425 4.216257 CAGTCCTGTTTCTTGTGGTAATGG 59.784 45.833 0.00 0.00 0.00 3.16
7892 11426 4.141251 AGTCCTGTTTCTTGTGGTAATGGT 60.141 41.667 0.00 0.00 0.00 3.55
7893 11427 4.023193 GTCCTGTTTCTTGTGGTAATGGTG 60.023 45.833 0.00 0.00 0.00 4.17
7894 11428 3.888930 CCTGTTTCTTGTGGTAATGGTGT 59.111 43.478 0.00 0.00 0.00 4.16
7895 11429 4.261572 CCTGTTTCTTGTGGTAATGGTGTG 60.262 45.833 0.00 0.00 0.00 3.82
7896 11430 4.527944 TGTTTCTTGTGGTAATGGTGTGA 58.472 39.130 0.00 0.00 0.00 3.58
7897 11431 5.136828 TGTTTCTTGTGGTAATGGTGTGAT 58.863 37.500 0.00 0.00 0.00 3.06
7898 11432 5.009510 TGTTTCTTGTGGTAATGGTGTGATG 59.990 40.000 0.00 0.00 0.00 3.07
7899 11433 3.684908 TCTTGTGGTAATGGTGTGATGG 58.315 45.455 0.00 0.00 0.00 3.51
7900 11434 1.832883 TGTGGTAATGGTGTGATGGC 58.167 50.000 0.00 0.00 0.00 4.40
7901 11435 1.074566 TGTGGTAATGGTGTGATGGCA 59.925 47.619 0.00 0.00 0.00 4.92
7902 11436 2.166829 GTGGTAATGGTGTGATGGCAA 58.833 47.619 0.00 0.00 0.00 4.52
7903 11437 2.560542 GTGGTAATGGTGTGATGGCAAA 59.439 45.455 0.00 0.00 0.00 3.68
7904 11438 3.006323 GTGGTAATGGTGTGATGGCAAAA 59.994 43.478 0.00 0.00 0.00 2.44
7905 11439 3.257873 TGGTAATGGTGTGATGGCAAAAG 59.742 43.478 0.00 0.00 0.00 2.27
7906 11440 3.258123 GGTAATGGTGTGATGGCAAAAGT 59.742 43.478 0.00 0.00 0.00 2.66
7907 11441 4.262420 GGTAATGGTGTGATGGCAAAAGTT 60.262 41.667 0.00 0.00 0.00 2.66
7908 11442 3.665745 ATGGTGTGATGGCAAAAGTTC 57.334 42.857 0.00 0.00 0.00 3.01
7909 11443 1.686052 TGGTGTGATGGCAAAAGTTCC 59.314 47.619 0.00 0.00 0.00 3.62
7910 11444 1.963515 GGTGTGATGGCAAAAGTTCCT 59.036 47.619 0.00 0.00 0.00 3.36
7911 11445 2.288395 GGTGTGATGGCAAAAGTTCCTG 60.288 50.000 0.00 0.00 0.00 3.86
7916 11450 1.367471 GGCAAAAGTTCCTGGCCAC 59.633 57.895 0.00 0.00 44.01 5.01
7944 11478 9.082313 ACATTTAGGGGCATCTTATAAATTGAG 57.918 33.333 0.00 0.00 0.00 3.02
7951 11485 9.077885 GGGGCATCTTATAAATTGAGAACATTA 57.922 33.333 0.00 0.00 0.00 1.90
7980 11514 3.383185 TCCTTGCTGTTGGGTTTTGTAAG 59.617 43.478 0.00 0.00 0.00 2.34
8102 11636 2.232208 CCGCTCCATATGATGAGCACTA 59.768 50.000 24.64 0.00 40.39 2.74
8155 11689 1.717791 CCTGCGGCACATATGTGGTG 61.718 60.000 31.63 12.03 45.72 4.17
8156 11690 0.744057 CTGCGGCACATATGTGGTGA 60.744 55.000 31.63 10.53 45.72 4.02
8161 11697 3.500982 CGGCACATATGTGGTGAAAAAG 58.499 45.455 31.63 8.56 45.72 2.27
8177 11713 0.402121 AAAGACCTCCAGGGAAGTGC 59.598 55.000 0.00 0.00 40.27 4.40
8221 11757 7.301868 ACATTACATCATGTTCCCAGTTTTT 57.698 32.000 0.00 0.00 33.29 1.94
8301 11838 6.435591 TGGTTGTAATTTCATGCCTCATAACA 59.564 34.615 7.39 0.00 0.00 2.41
8316 11853 5.120830 CCTCATAACAGTGCAAGTCTGTAAC 59.879 44.000 8.70 0.00 44.03 2.50
8317 11854 5.853936 TCATAACAGTGCAAGTCTGTAACT 58.146 37.500 8.70 0.00 44.03 2.24
8341 11878 6.908825 TCTATGGTAATTGTTGTTCTGTTGC 58.091 36.000 0.00 0.00 0.00 4.17
8365 11902 6.688813 GCAAGTAGAGTTTATGCTGTATTTGC 59.311 38.462 12.07 12.07 44.17 3.68
8498 12041 4.324267 CCCGAAAACTGTATCCAAGTTCT 58.676 43.478 0.00 0.00 0.00 3.01
8508 12051 2.724977 TCCAAGTTCTGTGTCTAGCG 57.275 50.000 0.00 0.00 0.00 4.26
8512 12055 0.522180 AGTTCTGTGTCTAGCGTCCG 59.478 55.000 0.00 0.00 0.00 4.79
8541 12084 6.959671 TCAAACTTTTCAAACTTTGCGAAT 57.040 29.167 0.00 0.00 0.00 3.34
8542 12085 7.357951 TCAAACTTTTCAAACTTTGCGAATT 57.642 28.000 0.00 0.00 0.00 2.17
8547 12090 7.455447 ACTTTTCAAACTTTGCGAATTGAAAG 58.545 30.769 19.96 17.21 46.40 2.62
8551 12094 6.738114 TCAAACTTTGCGAATTGAAAGATCT 58.262 32.000 0.99 0.00 34.02 2.75
8555 12277 1.202065 TGCGAATTGAAAGATCTGCGC 60.202 47.619 0.00 0.00 43.07 6.09
8564 12286 2.510238 GATCTGCGCGCCAACTCT 60.510 61.111 30.77 7.04 0.00 3.24
8565 12287 2.510238 ATCTGCGCGCCAACTCTC 60.510 61.111 30.77 0.00 0.00 3.20
8566 12288 2.897641 GATCTGCGCGCCAACTCTCT 62.898 60.000 30.77 4.04 0.00 3.10
8577 12299 2.744494 GCCAACTCTCTTAGAGCATGGG 60.744 54.545 21.53 12.92 46.12 4.00
8580 12302 4.162320 CCAACTCTCTTAGAGCATGGGTAA 59.838 45.833 16.20 0.00 46.12 2.85
8668 12390 2.166459 GCATAAAAACTGCCCCTTCCTC 59.834 50.000 0.00 0.00 33.44 3.71
8692 12414 2.754002 CTCTCTCACTGCACATCTCTGA 59.246 50.000 0.00 0.00 0.00 3.27
8764 12486 9.716531 TTGGATTTATACAACAAATTTCATGCA 57.283 25.926 0.00 0.00 0.00 3.96
8786 12508 4.081406 ACACACACATGATGCTAACCATT 58.919 39.130 0.00 0.00 33.29 3.16
8791 12513 6.317140 ACACACATGATGCTAACCATTCTAAG 59.683 38.462 0.00 0.00 33.29 2.18
8794 12517 5.824624 ACATGATGCTAACCATTCTAAGGTG 59.175 40.000 0.00 0.00 39.86 4.00
8825 12552 6.648879 ACAACAACACAACATTATAGCCTT 57.351 33.333 0.00 0.00 0.00 4.35
8830 12557 8.574251 ACAACACAACATTATAGCCTTGATTA 57.426 30.769 0.00 0.00 0.00 1.75
8831 12558 8.677300 ACAACACAACATTATAGCCTTGATTAG 58.323 33.333 0.00 0.00 0.00 1.73
8910 12637 3.365472 TCATGTTCTCCCAGATCGAGAA 58.635 45.455 7.27 7.27 42.63 2.87
9022 12749 3.994392 GCCGAAAGAACAGACTTATCACA 59.006 43.478 0.00 0.00 0.00 3.58
9072 12799 3.063452 CGCGTAACAGTAAGCCATTGAAT 59.937 43.478 0.00 0.00 31.70 2.57
9073 12800 4.269123 CGCGTAACAGTAAGCCATTGAATA 59.731 41.667 0.00 0.00 31.70 1.75
9074 12801 5.499047 GCGTAACAGTAAGCCATTGAATAC 58.501 41.667 0.00 0.00 0.00 1.89
9075 12802 5.064198 GCGTAACAGTAAGCCATTGAATACA 59.936 40.000 0.00 0.00 0.00 2.29
9076 12803 6.705782 CGTAACAGTAAGCCATTGAATACAG 58.294 40.000 0.00 0.00 0.00 2.74
9077 12804 6.312918 CGTAACAGTAAGCCATTGAATACAGT 59.687 38.462 0.00 0.00 0.00 3.55
9078 12805 6.743575 AACAGTAAGCCATTGAATACAGTC 57.256 37.500 0.00 0.00 0.00 3.51
9079 12806 5.186198 ACAGTAAGCCATTGAATACAGTCC 58.814 41.667 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.023021 ACAGATAGATGGCTAGATGTTAAACA 57.977 34.615 0.00 0.00 29.68 2.83
379 491 3.741860 CGTATCGACCTACGGCCT 58.258 61.111 10.10 0.00 40.54 5.19
482 594 3.557228 ACTGCTCCAATTTGCCAAAAA 57.443 38.095 0.00 0.00 0.00 1.94
612 724 6.208644 AGCACAAATAAAATGATACGATGGC 58.791 36.000 0.00 0.00 0.00 4.40
637 749 1.489481 TCACTAGGCTGACTGGGATG 58.511 55.000 0.00 0.00 30.80 3.51
650 762 5.679734 AACTGAAGCAACACAATCACTAG 57.320 39.130 0.00 0.00 0.00 2.57
739 851 6.379386 TCCATGTAGTCGAAAATCTATAGCG 58.621 40.000 0.00 0.00 0.00 4.26
805 930 5.963214 AATAGAAACCTAACACCCGGTAT 57.037 39.130 0.00 0.00 32.07 2.73
821 946 8.437575 GGGTATGTCCTTCCAATAGAAATAGAA 58.562 37.037 0.00 0.00 32.88 2.10
822 947 7.794683 AGGGTATGTCCTTCCAATAGAAATAGA 59.205 37.037 0.00 0.00 32.88 1.98
823 948 7.880195 CAGGGTATGTCCTTCCAATAGAAATAG 59.120 40.741 0.00 0.00 34.31 1.73
824 949 7.570982 TCAGGGTATGTCCTTCCAATAGAAATA 59.429 37.037 0.00 0.00 34.31 1.40
825 950 6.389869 TCAGGGTATGTCCTTCCAATAGAAAT 59.610 38.462 0.00 0.00 34.31 2.17
865 993 4.067896 CCATAGCACCATACATGTCTTCC 58.932 47.826 0.00 0.00 0.00 3.46
887 1015 3.335579 CCTCTTGTTGTGGTAGGTTAGC 58.664 50.000 0.00 0.00 0.00 3.09
1073 1205 1.338020 CTCCACAAAACTTGCCAGACC 59.662 52.381 0.00 0.00 0.00 3.85
1075 1207 1.691196 CCTCCACAAAACTTGCCAGA 58.309 50.000 0.00 0.00 0.00 3.86
1131 1263 1.376812 GAAGGCACCCCACTTACCG 60.377 63.158 0.00 0.00 0.00 4.02
1138 1270 2.455557 CATACAAATGAAGGCACCCCA 58.544 47.619 0.00 0.00 34.84 4.96
1169 1301 2.593346 AGCTAGGCTCTGAACAATCG 57.407 50.000 0.00 0.00 30.62 3.34
1211 1343 6.144402 GCAAAACCATGTTCAATGTGTAAGAG 59.856 38.462 0.00 0.00 0.00 2.85
1245 1384 2.086869 ACATCTCAGGCAAAATGGACG 58.913 47.619 0.00 0.00 0.00 4.79
1373 1516 5.174395 CCCAGATTTCATGATCTCGATACC 58.826 45.833 0.00 0.00 34.20 2.73
1505 1648 3.969117 TGTTTAGCAGAACAGCAACAG 57.031 42.857 1.29 0.00 34.77 3.16
1674 1838 1.195115 CTAGTTGCCTACCTCCAGCA 58.805 55.000 0.00 0.00 33.97 4.41
1687 1851 6.258068 GTCGGAAAAAGACATATCCCTAGTTG 59.742 42.308 0.00 0.00 38.42 3.16
1699 1863 4.698304 AGTTCAAACTGTCGGAAAAAGACA 59.302 37.500 0.00 0.00 45.23 3.41
1737 1902 6.647334 TGACAGAATCCAATACAAAGCAAA 57.353 33.333 0.00 0.00 0.00 3.68
1914 2079 8.190784 ACTTTGCATATGTTAATCAACTTAGGC 58.809 33.333 4.29 4.74 45.19 3.93
2037 2204 9.658799 TGGTTTTTCAACATTCATTGTTCTTTA 57.341 25.926 0.00 0.00 45.55 1.85
2102 2269 2.342179 GACTCAAGGCACTCACTTAGC 58.658 52.381 0.00 0.00 38.49 3.09
2105 2272 1.428869 AGGACTCAAGGCACTCACTT 58.571 50.000 0.00 0.00 38.49 3.16
2106 2273 2.175202 CTAGGACTCAAGGCACTCACT 58.825 52.381 0.00 0.00 38.49 3.41
2107 2274 1.404851 GCTAGGACTCAAGGCACTCAC 60.405 57.143 0.00 0.00 38.49 3.51
2108 2275 0.898320 GCTAGGACTCAAGGCACTCA 59.102 55.000 0.00 0.00 38.49 3.41
2109 2276 1.134848 CAGCTAGGACTCAAGGCACTC 60.135 57.143 0.00 0.00 38.49 3.51
2111 2278 0.610687 ACAGCTAGGACTCAAGGCAC 59.389 55.000 0.00 0.00 0.00 5.01
2112 2279 2.231716 TACAGCTAGGACTCAAGGCA 57.768 50.000 0.00 0.00 0.00 4.75
2113 2280 2.432510 ACATACAGCTAGGACTCAAGGC 59.567 50.000 0.00 0.00 0.00 4.35
2114 2281 4.261825 GCTACATACAGCTAGGACTCAAGG 60.262 50.000 0.00 0.00 38.57 3.61
2115 2282 4.339530 TGCTACATACAGCTAGGACTCAAG 59.660 45.833 0.00 0.00 42.30 3.02
2116 2283 4.098044 GTGCTACATACAGCTAGGACTCAA 59.902 45.833 0.00 0.00 42.30 3.02
2117 2284 3.632604 GTGCTACATACAGCTAGGACTCA 59.367 47.826 0.00 0.00 42.30 3.41
2118 2285 3.004944 GGTGCTACATACAGCTAGGACTC 59.995 52.174 3.95 0.00 42.30 3.36
2119 2286 2.959707 GGTGCTACATACAGCTAGGACT 59.040 50.000 3.95 0.00 42.30 3.85
2120 2287 2.287668 CGGTGCTACATACAGCTAGGAC 60.288 54.545 0.00 0.00 42.30 3.85
2121 2288 1.954382 CGGTGCTACATACAGCTAGGA 59.046 52.381 0.00 0.00 42.30 2.94
2122 2289 1.954382 TCGGTGCTACATACAGCTAGG 59.046 52.381 0.00 0.00 42.30 3.02
2123 2290 3.181490 TGTTCGGTGCTACATACAGCTAG 60.181 47.826 0.00 0.00 42.30 3.42
2124 2291 2.756207 TGTTCGGTGCTACATACAGCTA 59.244 45.455 0.00 0.00 42.30 3.32
2125 2292 1.548719 TGTTCGGTGCTACATACAGCT 59.451 47.619 0.00 0.00 42.30 4.24
2126 2293 2.004583 TGTTCGGTGCTACATACAGC 57.995 50.000 0.00 0.00 42.15 4.40
2127 2294 5.528870 TCATATGTTCGGTGCTACATACAG 58.471 41.667 1.90 0.00 39.34 2.74
2294 2609 0.893727 TCTTTTCCTTCCTTGGCCGC 60.894 55.000 0.00 0.00 0.00 6.53
2389 2704 9.768662 GATCTTATCCAAGGTTTACGGTAATTA 57.231 33.333 0.73 0.00 32.22 1.40
2480 2795 0.961753 GCAACCCTACTTGCTTGCTT 59.038 50.000 0.00 0.00 42.84 3.91
2490 2805 1.669795 GCATGTTTGCTGCAACCCTAC 60.670 52.381 15.72 11.09 45.77 3.18
2493 2808 3.955775 GCATGTTTGCTGCAACCC 58.044 55.556 15.72 9.31 45.77 4.11
2666 2982 4.724279 AAGCTCTAGAAGTTTTGGGGAA 57.276 40.909 0.00 0.00 0.00 3.97
2785 3196 5.715279 ACTGTTACTGTAGAGACATGGCTAA 59.285 40.000 0.00 0.00 34.24 3.09
2848 3290 6.612306 CCAAGTTAATTTGTTACTCTGAGCC 58.388 40.000 4.19 0.00 0.00 4.70
2851 3293 6.770785 ACTGCCAAGTTAATTTGTTACTCTGA 59.229 34.615 9.54 0.00 30.14 3.27
2904 3346 0.685131 TGATGCCAAATGGAGCCCAG 60.685 55.000 2.98 0.00 36.75 4.45
2933 3379 9.765795 AACTGTGTAGATAAGCTGGATTATAAC 57.234 33.333 0.00 0.00 0.00 1.89
3028 3483 5.042593 TGCTGTGCTGAACTTGTTTTATTG 58.957 37.500 0.00 0.00 0.00 1.90
3029 3484 5.043248 GTGCTGTGCTGAACTTGTTTTATT 58.957 37.500 0.00 0.00 0.00 1.40
3232 3692 2.485426 CGAAGAATGCATGGACAAGTGT 59.515 45.455 0.00 0.00 0.00 3.55
3337 3797 4.445385 GTGCAGCAAAATTAAGACAGTTGG 59.555 41.667 0.00 0.00 0.00 3.77
3458 4890 6.649141 TGTCGCTGATTTAGTACAAAGTTCAT 59.351 34.615 0.00 0.00 0.00 2.57
3459 4891 5.986741 TGTCGCTGATTTAGTACAAAGTTCA 59.013 36.000 0.00 0.00 0.00 3.18
3460 4892 6.145696 AGTGTCGCTGATTTAGTACAAAGTTC 59.854 38.462 0.00 0.00 0.00 3.01
3461 4893 5.989777 AGTGTCGCTGATTTAGTACAAAGTT 59.010 36.000 0.00 0.00 0.00 2.66
3462 4894 5.539048 AGTGTCGCTGATTTAGTACAAAGT 58.461 37.500 0.00 0.00 0.00 2.66
3607 5044 0.877071 AATGACGTCCTTGCAGCAAG 59.123 50.000 26.03 26.03 40.75 4.01
3761 5198 2.465860 TTAGACCACCACCAATGACG 57.534 50.000 0.00 0.00 0.00 4.35
3764 5201 2.291540 ACCCATTAGACCACCACCAATG 60.292 50.000 0.00 0.00 0.00 2.82
3779 5216 2.971330 TGTTGCAATTCCAGAACCCATT 59.029 40.909 0.59 0.00 0.00 3.16
3947 5384 7.202016 TCAACACTACATCAACAAGAAATCC 57.798 36.000 0.00 0.00 0.00 3.01
4009 5446 8.030692 CAGATTTCCTGTGCAAAAGATAATCAA 58.969 33.333 17.37 0.00 38.10 2.57
4041 5478 4.516698 GTCAATGAGCCTCTTTTGACAAGA 59.483 41.667 24.01 4.71 0.00 3.02
4098 5535 6.012337 TCTGAATAATCCAATGCACCCTTA 57.988 37.500 0.00 0.00 0.00 2.69
4166 5603 9.128107 CGCAACTATTTTGTCTTGTTTAATCAT 57.872 29.630 0.00 0.00 0.00 2.45
4168 5605 7.114247 TGCGCAACTATTTTGTCTTGTTTAATC 59.886 33.333 8.16 0.00 0.00 1.75
4169 5606 6.920758 TGCGCAACTATTTTGTCTTGTTTAAT 59.079 30.769 8.16 0.00 0.00 1.40
4191 5631 7.005296 ACTAGAGGGACCCTAATATATATGCG 58.995 42.308 14.87 0.00 31.76 4.73
4243 5683 5.328886 TCATAAGATTCGTTAATGCGCTG 57.671 39.130 9.73 0.00 0.00 5.18
4246 5686 6.287107 ACCTTCATAAGATTCGTTAATGCG 57.713 37.500 0.00 0.00 0.00 4.73
4300 5741 8.621532 TTGCATAACCATATCAAAGGTATCTC 57.378 34.615 0.00 0.00 37.07 2.75
4337 5778 5.163642 CGTAAGTCCTAAGTGCTATGTGACT 60.164 44.000 0.00 0.00 33.30 3.41
4350 5791 6.710597 AGAGAACATATGCGTAAGTCCTAA 57.289 37.500 1.58 0.00 41.68 2.69
4352 5793 5.361285 AGAAGAGAACATATGCGTAAGTCCT 59.639 40.000 1.58 0.00 41.68 3.85
4353 5794 5.593010 AGAAGAGAACATATGCGTAAGTCC 58.407 41.667 1.58 0.00 41.68 3.85
4355 5796 6.398918 ACAAGAAGAGAACATATGCGTAAGT 58.601 36.000 1.58 0.00 41.68 2.24
4360 5811 4.210120 GCCTACAAGAAGAGAACATATGCG 59.790 45.833 1.58 0.00 0.00 4.73
4372 5823 6.314896 CCTTCTCAATAACAGCCTACAAGAAG 59.685 42.308 0.00 0.00 37.83 2.85
4577 6029 3.004315 GGAACAATGCGTTTTCAGGAAGA 59.996 43.478 12.51 0.00 38.19 2.87
4593 6047 6.600032 TAAGTGCACTTCTTAAGTTGGAACAA 59.400 34.615 34.29 9.34 40.46 2.83
4637 6091 4.767578 ATAGATGTGATGTGTTCCAGCT 57.232 40.909 0.00 0.00 0.00 4.24
4656 6117 8.165239 ACATGCTTCTGTTCACAAACTTTATA 57.835 30.769 0.00 0.00 36.30 0.98
4662 6123 5.821204 AGTTACATGCTTCTGTTCACAAAC 58.179 37.500 0.00 0.00 35.85 2.93
4668 6129 8.125448 GGATTTGATAGTTACATGCTTCTGTTC 58.875 37.037 0.00 0.00 0.00 3.18
4675 6136 5.300286 GCCAAGGATTTGATAGTTACATGCT 59.700 40.000 0.00 0.00 36.36 3.79
4694 6156 2.127271 TGGTGATGTATGGTGCCAAG 57.873 50.000 0.00 0.00 0.00 3.61
4698 6160 5.034152 CGTTAAATTGGTGATGTATGGTGC 58.966 41.667 0.00 0.00 0.00 5.01
4709 6171 2.430546 TGCTTGCCGTTAAATTGGTG 57.569 45.000 0.00 0.00 0.00 4.17
4721 6183 4.458951 CATCGTAACTTAGATGCTTGCC 57.541 45.455 0.00 0.00 37.94 4.52
4778 6240 5.411669 AGTGTTAGCAACTTAGCATAACCAC 59.588 40.000 0.00 0.00 36.85 4.16
4801 6263 8.530269 ACACGTAGAATTAAGGTTAACTTCAG 57.470 34.615 5.42 0.68 40.64 3.02
4810 6272 6.147164 CACACATTGACACGTAGAATTAAGGT 59.853 38.462 0.00 0.00 0.00 3.50
4822 6284 2.783284 GCAAAGTTCACACATTGACACG 59.217 45.455 0.00 0.00 34.13 4.49
4868 6336 3.695060 AGAACACACCTCCTACATCTACG 59.305 47.826 0.00 0.00 0.00 3.51
4883 6353 5.650266 ACAGTAAATTGACACCAAGAACACA 59.350 36.000 0.00 0.00 35.48 3.72
4924 6394 9.730420 ACAACACTCAGTAATTAAATGACAAAC 57.270 29.630 0.00 0.00 0.00 2.93
4953 6423 0.392706 TCCGCGCATAGATGTTCCAT 59.607 50.000 8.75 0.00 0.00 3.41
4966 6436 2.401195 GAAGTCATGCTTCCGCGC 59.599 61.111 15.07 0.00 45.95 6.86
4980 6450 7.615582 TGAATGAACCTGCATAAACTAGAAG 57.384 36.000 0.00 0.00 0.00 2.85
4993 6463 7.775397 ATTCTTTTGTGTTTGAATGAACCTG 57.225 32.000 0.00 0.00 0.00 4.00
5132 6616 8.378421 GCAATTGATTAAAGAGCAGAACAATTC 58.622 33.333 10.34 0.00 35.51 2.17
5171 6655 2.691526 CCACATCTCATTTGGGACATGG 59.308 50.000 0.00 0.00 39.30 3.66
5186 6670 2.618241 TCAAATAGCAATCGGCCACATC 59.382 45.455 2.24 0.00 46.50 3.06
5231 6715 7.268586 CAACAGCTACTACCTTATGAAGACAT 58.731 38.462 0.00 0.00 40.16 3.06
5232 6716 6.631016 CAACAGCTACTACCTTATGAAGACA 58.369 40.000 0.00 0.00 0.00 3.41
5233 6717 5.520649 GCAACAGCTACTACCTTATGAAGAC 59.479 44.000 0.00 0.00 0.00 3.01
5234 6718 5.186992 TGCAACAGCTACTACCTTATGAAGA 59.813 40.000 0.00 0.00 0.00 2.87
5262 6752 8.879759 TCACCAAAATAGACGCTTATAAGAAAG 58.120 33.333 16.85 8.76 0.00 2.62
5275 6765 6.183360 GCTTCCCATAACTCACCAAAATAGAC 60.183 42.308 0.00 0.00 0.00 2.59
5286 6776 8.090788 AGTTAGAAATAGCTTCCCATAACTCA 57.909 34.615 0.00 0.00 31.65 3.41
5305 6796 9.712305 TTTCCAAACATTTGTTTCAAAGTTAGA 57.288 25.926 5.72 4.69 45.54 2.10
5306 6797 9.971744 CTTTCCAAACATTTGTTTCAAAGTTAG 57.028 29.630 18.56 4.88 45.54 2.34
5361 6855 7.549615 AAACCAGTAAAACTCAAGTAGTGTC 57.450 36.000 0.00 0.00 38.88 3.67
5367 6861 7.639113 TCATCAAAACCAGTAAAACTCAAGT 57.361 32.000 0.00 0.00 0.00 3.16
5386 6880 9.803507 AAAGCTTGAAGGATTGATATATCATCA 57.196 29.630 16.06 12.93 36.56 3.07
5433 6927 6.506147 TGCAAATAACATAGCATTAGCAAGG 58.494 36.000 0.00 0.00 45.49 3.61
5498 6992 3.825328 AGCTTGTGGTGATGTCTTTTCT 58.175 40.909 0.00 0.00 0.00 2.52
5621 7115 1.338579 ACTAGAAGCTGAGCACCTTGC 60.339 52.381 7.39 0.00 45.46 4.01
5708 7202 7.541122 ACAGAGTCAAAGAACTTACTGAAAC 57.459 36.000 0.00 0.00 29.95 2.78
5783 7279 2.287188 ACATTTGCTTGCTCGTTGACAG 60.287 45.455 0.00 0.00 0.00 3.51
5787 7283 2.053627 GGAACATTTGCTTGCTCGTTG 58.946 47.619 0.00 0.00 0.00 4.10
5790 7286 0.597568 TGGGAACATTTGCTTGCTCG 59.402 50.000 0.00 0.00 33.40 5.03
5858 7356 5.642063 AGGTAAGTGAACGAACAATACATGG 59.358 40.000 0.00 0.00 0.00 3.66
5941 7523 1.437160 CCCCCAAATACATGCGCAC 59.563 57.895 14.90 0.00 0.00 5.34
5956 7546 7.396339 ACATTCTAGTAAATCACTTTTTCCCCC 59.604 37.037 0.00 0.00 38.80 5.40
6159 8154 3.492421 AAGGCACAACAAGCATATTCG 57.508 42.857 0.00 0.00 0.00 3.34
6450 8609 3.494398 CCCATCCTATTGACTGTAACCCG 60.494 52.174 0.00 0.00 0.00 5.28
6475 8634 4.225042 TGCAGTAACTATTGGTCTGGTCAT 59.775 41.667 0.00 0.00 0.00 3.06
6727 8891 4.094294 TCATTAACAAATGAGGTAGCACGC 59.906 41.667 0.00 0.00 34.50 5.34
6883 9047 2.612471 GCGATATCAAGATCAGCAGCCT 60.612 50.000 3.12 0.00 0.00 4.58
7028 9192 4.627467 CAGCAGTACAATCTCAACCAGTAC 59.373 45.833 0.00 0.00 36.26 2.73
7043 9207 5.354234 AGTTGCAACATATAACCAGCAGTAC 59.646 40.000 30.11 0.00 33.14 2.73
7062 9232 9.908152 AAGTGTTAAATTAGGTTCATAAGTTGC 57.092 29.630 1.31 0.00 0.00 4.17
7275 10501 6.166982 GGGTGAACTATAGGTTGCAGATATC 58.833 44.000 4.43 0.00 38.41 1.63
7372 10886 0.923358 ACCACCACACCTCCTTCAAA 59.077 50.000 0.00 0.00 0.00 2.69
7420 10935 2.108952 GGCCACCCCTTCATTATCAGAT 59.891 50.000 0.00 0.00 0.00 2.90
7424 10939 1.543429 CGAGGCCACCCCTTCATTATC 60.543 57.143 5.01 0.00 46.60 1.75
7565 11080 1.488812 TGCAAGAGTGTACCAGTGGTT 59.511 47.619 22.49 0.92 37.09 3.67
7737 11270 0.534877 TCTGCGGCAATGACACAACT 60.535 50.000 3.44 0.00 0.00 3.16
7751 11284 9.646336 AAAGCGTAAGTTAATAAATATTCTGCG 57.354 29.630 0.00 0.00 41.68 5.18
7805 11338 6.924111 ACTTCATTTTCATACCATTCACACC 58.076 36.000 0.00 0.00 0.00 4.16
7845 11379 7.283127 ACTGACAACACAAGACTGAACAATAAT 59.717 33.333 0.00 0.00 0.00 1.28
7846 11380 6.597672 ACTGACAACACAAGACTGAACAATAA 59.402 34.615 0.00 0.00 0.00 1.40
7847 11381 6.112734 ACTGACAACACAAGACTGAACAATA 58.887 36.000 0.00 0.00 0.00 1.90
7873 11407 4.578516 TCACACCATTACCACAAGAAACAG 59.421 41.667 0.00 0.00 0.00 3.16
7882 11416 1.832883 TGCCATCACACCATTACCAC 58.167 50.000 0.00 0.00 0.00 4.16
7883 11417 2.593925 TTGCCATCACACCATTACCA 57.406 45.000 0.00 0.00 0.00 3.25
7884 11418 3.258123 ACTTTTGCCATCACACCATTACC 59.742 43.478 0.00 0.00 0.00 2.85
7885 11419 4.519540 ACTTTTGCCATCACACCATTAC 57.480 40.909 0.00 0.00 0.00 1.89
7886 11420 4.021544 GGAACTTTTGCCATCACACCATTA 60.022 41.667 0.00 0.00 0.00 1.90
7887 11421 3.244181 GGAACTTTTGCCATCACACCATT 60.244 43.478 0.00 0.00 0.00 3.16
7888 11422 2.299867 GGAACTTTTGCCATCACACCAT 59.700 45.455 0.00 0.00 0.00 3.55
7889 11423 1.686052 GGAACTTTTGCCATCACACCA 59.314 47.619 0.00 0.00 0.00 4.17
7890 11424 1.963515 AGGAACTTTTGCCATCACACC 59.036 47.619 0.00 0.00 27.25 4.16
7891 11425 2.288395 CCAGGAACTTTTGCCATCACAC 60.288 50.000 0.00 0.00 34.60 3.82
7892 11426 1.962807 CCAGGAACTTTTGCCATCACA 59.037 47.619 0.00 0.00 34.60 3.58
7893 11427 1.337167 GCCAGGAACTTTTGCCATCAC 60.337 52.381 0.00 0.00 34.60 3.06
7894 11428 0.968405 GCCAGGAACTTTTGCCATCA 59.032 50.000 0.00 0.00 34.60 3.07
7895 11429 0.247460 GGCCAGGAACTTTTGCCATC 59.753 55.000 0.00 0.00 42.52 3.51
7896 11430 0.471591 TGGCCAGGAACTTTTGCCAT 60.472 50.000 0.00 0.00 45.99 4.40
7897 11431 3.869481 GGCCAGGAACTTTTGCCA 58.131 55.556 0.00 0.00 42.52 4.92
7898 11432 1.367471 GTGGCCAGGAACTTTTGCC 59.633 57.895 5.11 0.00 43.07 4.52
7899 11433 1.367471 GGTGGCCAGGAACTTTTGC 59.633 57.895 5.11 0.00 34.60 3.68
7900 11434 0.389025 GTGGTGGCCAGGAACTTTTG 59.611 55.000 5.11 0.00 34.60 2.44
7901 11435 0.032615 TGTGGTGGCCAGGAACTTTT 60.033 50.000 5.11 0.00 34.60 2.27
7902 11436 0.188342 ATGTGGTGGCCAGGAACTTT 59.812 50.000 5.11 0.00 34.60 2.66
7903 11437 0.188342 AATGTGGTGGCCAGGAACTT 59.812 50.000 5.11 0.00 34.60 2.66
7904 11438 0.188342 AAATGTGGTGGCCAGGAACT 59.812 50.000 5.11 0.00 43.88 3.01
7905 11439 1.818674 CTAAATGTGGTGGCCAGGAAC 59.181 52.381 5.11 5.43 32.34 3.62
7906 11440 1.272425 CCTAAATGTGGTGGCCAGGAA 60.272 52.381 5.11 0.00 32.34 3.36
7907 11441 0.331278 CCTAAATGTGGTGGCCAGGA 59.669 55.000 5.11 0.00 32.34 3.86
7908 11442 0.684153 CCCTAAATGTGGTGGCCAGG 60.684 60.000 5.11 0.00 32.34 4.45
7909 11443 0.684153 CCCCTAAATGTGGTGGCCAG 60.684 60.000 5.11 0.00 32.34 4.85
7910 11444 1.386155 CCCCTAAATGTGGTGGCCA 59.614 57.895 0.00 0.00 0.00 5.36
7911 11445 2.058001 GCCCCTAAATGTGGTGGCC 61.058 63.158 0.00 0.00 35.96 5.36
7916 11450 7.781324 ATTTATAAGATGCCCCTAAATGTGG 57.219 36.000 0.00 0.00 0.00 4.17
7944 11478 3.075866 GCAAGGAGCAGCATAATGTTC 57.924 47.619 0.00 0.00 44.79 3.18
7980 11514 5.286438 CAACAAACTTTGGTAGGCTTAACC 58.714 41.667 6.47 0.00 37.53 2.85
7993 11527 8.091449 TGACATGTTTAGTTTCCAACAAACTTT 58.909 29.630 0.00 0.00 40.58 2.66
8020 11554 2.202440 CGCGGCCTACGGATATCG 60.202 66.667 0.00 0.00 44.51 2.92
8086 11620 3.260128 TCTGCCTAGTGCTCATCATATGG 59.740 47.826 2.13 0.00 42.00 2.74
8124 11658 1.968017 CCGCAGGCAGTGTTGATGT 60.968 57.895 0.00 0.00 46.14 3.06
8155 11689 3.149981 CACTTCCCTGGAGGTCTTTTTC 58.850 50.000 0.00 0.00 31.94 2.29
8156 11690 2.753168 GCACTTCCCTGGAGGTCTTTTT 60.753 50.000 0.00 0.00 31.94 1.94
8161 11697 1.414550 GATAGCACTTCCCTGGAGGTC 59.585 57.143 0.00 0.00 31.94 3.85
8177 11713 5.134202 TGTCCAACACACACTACAGATAG 57.866 43.478 0.00 0.00 34.25 2.08
8221 11757 5.702065 TGTTGTATATCAGCCCAGGTAAA 57.298 39.130 0.00 0.00 0.00 2.01
8260 11796 1.892209 ACCAGAAAAGTACGCCAAGG 58.108 50.000 0.00 0.00 0.00 3.61
8301 11838 4.528596 ACCATAGAGTTACAGACTTGCACT 59.471 41.667 0.00 0.00 39.19 4.40
8316 11853 7.023575 GCAACAGAACAACAATTACCATAGAG 58.976 38.462 0.00 0.00 0.00 2.43
8317 11854 6.488344 TGCAACAGAACAACAATTACCATAGA 59.512 34.615 0.00 0.00 0.00 1.98
8341 11878 7.148255 TGGCAAATACAGCATAAACTCTACTTG 60.148 37.037 0.00 0.00 0.00 3.16
8508 12051 4.287238 TGAAAAGTTTGAAAGAGCGGAC 57.713 40.909 0.00 0.00 0.00 4.79
8520 12063 7.357951 TCAATTCGCAAAGTTTGAAAAGTTT 57.642 28.000 19.82 3.31 41.01 2.66
8521 12064 6.959671 TCAATTCGCAAAGTTTGAAAAGTT 57.040 29.167 19.82 3.94 33.16 2.66
8541 12084 1.233950 TTGGCGCGCAGATCTTTCAA 61.234 50.000 34.42 21.20 0.00 2.69
8542 12085 1.670730 TTGGCGCGCAGATCTTTCA 60.671 52.632 34.42 16.12 0.00 2.69
8547 12090 2.510238 AGAGTTGGCGCGCAGATC 60.510 61.111 34.42 23.06 0.00 2.75
8551 12094 1.446099 CTAAGAGAGTTGGCGCGCA 60.446 57.895 34.42 16.55 0.00 6.09
8555 12277 2.200067 CATGCTCTAAGAGAGTTGGCG 58.800 52.381 7.47 0.00 44.12 5.69
8564 12286 6.824958 AAGGTTATTACCCATGCTCTAAGA 57.175 37.500 0.00 0.00 46.28 2.10
8565 12287 7.054124 TCAAAGGTTATTACCCATGCTCTAAG 58.946 38.462 0.00 0.00 46.28 2.18
8566 12288 6.964464 TCAAAGGTTATTACCCATGCTCTAA 58.036 36.000 0.00 0.00 46.28 2.10
8577 12299 6.872920 TCCAAATGCCATCAAAGGTTATTAC 58.127 36.000 0.00 0.00 0.00 1.89
8580 12302 5.271598 TCTCCAAATGCCATCAAAGGTTAT 58.728 37.500 0.00 0.00 0.00 1.89
8668 12390 0.177604 GATGTGCAGTGAGAGAGGGG 59.822 60.000 0.00 0.00 0.00 4.79
8692 12414 2.499289 GGACAGAGGATGTGATGTGAGT 59.501 50.000 0.00 0.00 44.17 3.41
8764 12486 3.138884 TGGTTAGCATCATGTGTGTGT 57.861 42.857 0.00 0.00 0.00 3.72
8786 12508 7.040340 TGTGTTGTTGTTCTTTTTCACCTTAGA 60.040 33.333 0.00 0.00 0.00 2.10
8791 12513 5.463724 TGTTGTGTTGTTGTTCTTTTTCACC 59.536 36.000 0.00 0.00 0.00 4.02
8848 12575 4.699257 AGGATGCACAGAGAATGAAGAAAC 59.301 41.667 0.00 0.00 0.00 2.78
8910 12637 5.454062 ACTACTACATCCTGAATCTGCTCT 58.546 41.667 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.