Multiple sequence alignment - TraesCS3B01G090900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G090900 chr3B 100.000 8524 0 0 1 8524 59968699 59960176 0.000000e+00 15741.0
1 TraesCS3B01G090900 chr3B 94.165 874 36 3 1 863 59753471 59754340 0.000000e+00 1317.0
2 TraesCS3B01G090900 chr3B 86.002 1043 109 21 6490 7500 59754339 59755376 0.000000e+00 1083.0
3 TraesCS3B01G090900 chr3B 96.265 589 10 4 961 1544 808466517 808465936 0.000000e+00 955.0
4 TraesCS3B01G090900 chr3B 99.000 500 5 0 1542 2041 808462281 808461782 0.000000e+00 896.0
5 TraesCS3B01G090900 chr3B 98.636 220 2 1 861 1080 808467004 808466786 1.040000e-103 388.0
6 TraesCS3B01G090900 chr3B 89.113 248 26 1 3061 3307 543468733 543468486 2.990000e-79 307.0
7 TraesCS3B01G090900 chr7B 98.578 5554 46 5 961 6490 161222174 161227718 0.000000e+00 9788.0
8 TraesCS3B01G090900 chr7B 99.548 221 1 0 860 1080 161221953 161222173 3.710000e-108 403.0
9 TraesCS3B01G090900 chr7B 88.433 268 19 5 1991 2246 64558094 64557827 6.420000e-81 313.0
10 TraesCS3B01G090900 chr1D 95.152 2331 82 10 859 3163 419117370 419115045 0.000000e+00 3650.0
11 TraesCS3B01G090900 chr1D 96.906 905 28 0 5367 6271 419081105 419080201 0.000000e+00 1517.0
12 TraesCS3B01G090900 chr1D 90.554 307 25 2 4678 4980 321331214 321331520 3.710000e-108 403.0
13 TraesCS3B01G090900 chr1D 90.833 240 9 3 6264 6491 419073770 419073532 8.310000e-80 309.0
14 TraesCS3B01G090900 chr5A 94.440 2320 75 22 868 3163 705229541 705227252 0.000000e+00 3520.0
15 TraesCS3B01G090900 chr5A 96.392 1358 42 2 5139 6490 705227020 705225664 0.000000e+00 2230.0
16 TraesCS3B01G090900 chr5A 92.435 846 37 2 4809 5627 670320729 670321574 0.000000e+00 1182.0
17 TraesCS3B01G090900 chr5A 85.000 720 80 12 7807 8524 681639998 681639305 0.000000e+00 706.0
18 TraesCS3B01G090900 chr5A 82.572 832 112 21 7714 8524 566645522 566646341 0.000000e+00 702.0
19 TraesCS3B01G090900 chr5A 84.306 720 84 15 7807 8524 683869520 683870212 0.000000e+00 676.0
20 TraesCS3B01G090900 chr5A 88.360 189 8 6 4521 4695 670320544 670320732 1.860000e-51 215.0
21 TraesCS3B01G090900 chr4A 92.627 1926 65 22 1260 3163 678377750 678379620 0.000000e+00 2699.0
22 TraesCS3B01G090900 chr4A 96.671 1382 44 2 4978 6358 678379727 678381107 0.000000e+00 2296.0
23 TraesCS3B01G090900 chr4A 98.113 265 5 0 859 1123 678376992 678377256 6.030000e-126 462.0
24 TraesCS3B01G090900 chr4A 91.498 247 19 2 3061 3306 741258902 741258657 1.060000e-88 339.0
25 TraesCS3B01G090900 chr4A 92.661 109 8 0 6382 6490 678381613 678381721 3.190000e-34 158.0
26 TraesCS3B01G090900 chr7A 92.120 1269 72 15 4809 6051 690714608 690715874 0.000000e+00 1764.0
27 TraesCS3B01G090900 chr7A 93.194 1102 69 5 3556 4652 543306380 543305280 0.000000e+00 1615.0
28 TraesCS3B01G090900 chr7A 92.670 1105 63 12 3556 4654 690713460 690714552 0.000000e+00 1576.0
29 TraesCS3B01G090900 chr7A 92.461 1101 57 1 4809 5883 543305222 543304122 0.000000e+00 1550.0
30 TraesCS3B01G090900 chr7A 91.638 861 51 9 2245 3089 543307538 543306683 0.000000e+00 1171.0
31 TraesCS3B01G090900 chr7A 91.779 596 34 9 2245 2831 690709334 690709923 0.000000e+00 815.0
32 TraesCS3B01G090900 chr7A 93.802 242 14 1 2848 3089 690712917 690713157 6.290000e-96 363.0
33 TraesCS3B01G090900 chr7A 94.652 187 10 0 3121 3307 690713156 690713342 3.010000e-74 291.0
34 TraesCS3B01G090900 chr7A 94.118 187 11 0 3121 3307 543306684 543306498 1.400000e-72 285.0
35 TraesCS3B01G090900 chr7A 97.619 42 1 0 4654 4695 543305260 543305219 1.190000e-08 73.1
36 TraesCS3B01G090900 chr3A 92.205 1270 64 16 4809 6049 10027000 10025737 0.000000e+00 1764.0
37 TraesCS3B01G090900 chr3A 95.014 1103 46 7 3561 4656 10028154 10027054 0.000000e+00 1724.0
38 TraesCS3B01G090900 chr3A 94.061 1145 51 12 3556 4695 743896899 743895767 0.000000e+00 1722.0
39 TraesCS3B01G090900 chr3A 91.304 1104 49 6 4809 5883 243090948 243089863 0.000000e+00 1463.0
40 TraesCS3B01G090900 chr3A 95.602 864 33 2 1 863 47584489 47585348 0.000000e+00 1380.0
41 TraesCS3B01G090900 chr3A 95.486 864 33 3 1 863 47555802 47556660 0.000000e+00 1375.0
42 TraesCS3B01G090900 chr3A 95.370 864 35 2 1 863 47528106 47528965 0.000000e+00 1369.0
43 TraesCS3B01G090900 chr3A 86.299 1051 106 21 6490 7505 47585347 47586394 0.000000e+00 1109.0
44 TraesCS3B01G090900 chr3A 85.755 1046 112 18 6490 7500 47528964 47530007 0.000000e+00 1072.0
45 TraesCS3B01G090900 chr3A 85.660 1046 112 19 6490 7500 47556659 47557701 0.000000e+00 1066.0
46 TraesCS3B01G090900 chr3A 94.557 643 28 4 2454 3089 743897843 743897201 0.000000e+00 987.0
47 TraesCS3B01G090900 chr3A 94.085 541 28 3 4118 4654 243091544 243091004 0.000000e+00 819.0
48 TraesCS3B01G090900 chr3A 92.708 576 29 6 2264 2831 647365221 647365791 0.000000e+00 819.0
49 TraesCS3B01G090900 chr3A 92.708 576 28 8 2264 2831 662881633 662881064 0.000000e+00 819.0
50 TraesCS3B01G090900 chr3A 83.119 699 100 7 7843 8524 510669735 510670432 9.400000e-174 621.0
51 TraesCS3B01G090900 chr3A 94.118 187 11 0 3121 3307 743897202 743897016 1.400000e-72 285.0
52 TraesCS3B01G090900 chr3A 86.076 237 32 1 3061 3296 533660847 533661083 3.950000e-63 254.0
53 TraesCS3B01G090900 chr3A 86.784 227 26 3 7281 7505 47557880 47558104 5.110000e-62 250.0
54 TraesCS3B01G090900 chr3A 97.619 42 1 0 4654 4695 243090986 243090945 1.190000e-08 73.1
55 TraesCS3B01G090900 chr3A 96.875 32 1 0 860 891 706127351 706127320 4.000000e-03 54.7
56 TraesCS3B01G090900 chr2D 95.298 1106 44 7 3556 4654 152014908 152013804 0.000000e+00 1748.0
57 TraesCS3B01G090900 chr2D 90.859 547 24 1 4809 5329 152013748 152013202 0.000000e+00 710.0
58 TraesCS3B01G090900 chr2D 90.234 256 13 5 1989 2232 87841267 87841522 2.970000e-84 324.0
59 TraesCS3B01G090900 chr2D 90.283 247 22 1 3308 3554 11562715 11562959 1.070000e-83 322.0
60 TraesCS3B01G090900 chr2D 91.379 58 5 0 1137 1194 30410312 30410369 7.090000e-11 80.5
61 TraesCS3B01G090900 chr2D 100.000 42 0 0 4654 4695 152013786 152013745 2.550000e-10 78.7
62 TraesCS3B01G090900 chr2B 91.568 1269 71 17 4809 6051 528471261 528472519 0.000000e+00 1718.0
63 TraesCS3B01G090900 chr2B 93.733 1101 58 9 3561 4654 528470109 528471205 0.000000e+00 1640.0
64 TraesCS3B01G090900 chr2B 94.366 852 47 1 5198 6049 618309226 618308376 0.000000e+00 1306.0
65 TraesCS3B01G090900 chr2B 85.455 550 68 7 7976 8524 245693576 245694114 5.780000e-156 562.0
66 TraesCS3B01G090900 chr2B 93.117 247 15 1 3308 3554 18018255 18018499 2.260000e-95 361.0
67 TraesCS3B01G090900 chr2B 92.308 247 17 1 3308 3554 18114791 18115035 4.900000e-92 350.0
68 TraesCS3B01G090900 chr2B 89.157 249 23 4 3308 3554 18074542 18074788 2.990000e-79 307.0
69 TraesCS3B01G090900 chr2B 97.619 42 1 0 4654 4695 528471223 528471264 1.190000e-08 73.1
70 TraesCS3B01G090900 chr1B 94.884 1075 54 1 4978 6051 681772768 681773842 0.000000e+00 1679.0
71 TraesCS3B01G090900 chr1B 94.554 808 39 4 3561 4364 681771881 681772687 0.000000e+00 1243.0
72 TraesCS3B01G090900 chr1B 89.216 306 30 3 4669 4972 434336538 434336842 6.240000e-101 379.0
73 TraesCS3B01G090900 chr6B 94.038 1107 54 8 3556 4652 26548342 26549446 0.000000e+00 1668.0
74 TraesCS3B01G090900 chr6B 93.341 856 41 7 2245 3089 26547189 26548039 0.000000e+00 1251.0
75 TraesCS3B01G090900 chr6B 88.462 572 57 6 7954 8524 637117393 637116830 0.000000e+00 682.0
76 TraesCS3B01G090900 chr6B 85.191 601 77 7 7925 8524 32447237 32446648 2.630000e-169 606.0
77 TraesCS3B01G090900 chr6B 90.272 257 12 6 1989 2232 550824501 550824245 2.970000e-84 324.0
78 TraesCS3B01G090900 chr6B 91.071 56 5 0 6085 6140 362730138 362730193 9.180000e-10 76.8
79 TraesCS3B01G090900 chr6B 100.000 40 0 0 4656 4695 26549468 26549507 3.300000e-09 75.0
80 TraesCS3B01G090900 chr3D 90.871 1205 79 9 6490 7664 37526883 37525680 0.000000e+00 1587.0
81 TraesCS3B01G090900 chr3D 90.871 1205 79 9 6490 7664 37540752 37539549 0.000000e+00 1587.0
82 TraesCS3B01G090900 chr3D 95.139 864 36 3 1 863 37451116 37450258 0.000000e+00 1358.0
83 TraesCS3B01G090900 chr3D 93.166 878 41 6 1 863 37270380 37271253 0.000000e+00 1271.0
84 TraesCS3B01G090900 chr3D 93.242 873 42 5 1 863 37247872 37248737 0.000000e+00 1269.0
85 TraesCS3B01G090900 chr3D 86.190 1050 107 21 6490 7505 37441802 37440757 0.000000e+00 1101.0
86 TraesCS3B01G090900 chr3D 85.714 1043 114 17 6490 7500 37248736 37249775 0.000000e+00 1068.0
87 TraesCS3B01G090900 chr3D 91.139 790 55 8 6758 7539 37443482 37442700 0.000000e+00 1057.0
88 TraesCS3B01G090900 chr3D 85.317 1042 119 16 6490 7500 37271252 37272290 0.000000e+00 1046.0
89 TraesCS3B01G090900 chr3D 95.748 588 21 1 172 759 37532843 37532260 0.000000e+00 944.0
90 TraesCS3B01G090900 chr3D 93.542 511 28 2 354 863 37442307 37441801 0.000000e+00 756.0
91 TraesCS3B01G090900 chr3D 86.250 560 55 11 5739 6298 535747588 535748125 9.530000e-164 588.0
92 TraesCS3B01G090900 chr3D 93.316 374 14 2 1 363 37289537 37289910 7.530000e-150 542.0
93 TraesCS3B01G090900 chr3D 90.688 247 22 1 3061 3306 535744650 535744896 2.290000e-85 327.0
94 TraesCS3B01G090900 chr3D 98.561 139 2 0 49 187 37532995 37532857 6.610000e-61 246.0
95 TraesCS3B01G090900 chr3D 96.269 134 5 0 7531 7664 37290302 37290435 4.010000e-53 220.0
96 TraesCS3B01G090900 chr3D 91.818 110 8 1 755 863 37526991 37526882 1.480000e-32 152.0
97 TraesCS3B01G090900 chr4D 94.089 1032 36 7 1227 2246 346194251 346195269 0.000000e+00 1544.0
98 TraesCS3B01G090900 chr4D 96.178 314 9 2 860 1170 346193563 346193876 2.120000e-140 510.0
99 TraesCS3B01G090900 chr7D 93.636 770 35 8 2245 3005 247749837 247749073 0.000000e+00 1138.0
100 TraesCS3B01G090900 chr7D 90.741 270 13 5 1989 2246 509155466 509155735 4.900000e-92 350.0
101 TraesCS3B01G090900 chr7D 88.957 163 14 2 6329 6490 542824468 542824309 1.880000e-46 198.0
102 TraesCS3B01G090900 chr7D 90.698 43 4 0 1078 1120 555000866 555000824 3.320000e-04 58.4
103 TraesCS3B01G090900 chr5D 85.089 845 95 16 7709 8524 555496010 555495168 0.000000e+00 833.0
104 TraesCS3B01G090900 chr5B 84.444 720 85 20 7819 8524 596548868 596549574 0.000000e+00 684.0
105 TraesCS3B01G090900 chr5B 92.241 464 30 5 865 1327 531851688 531851230 0.000000e+00 652.0
106 TraesCS3B01G090900 chr5B 94.618 353 18 1 1331 1682 531826484 531826132 5.820000e-151 545.0
107 TraesCS3B01G090900 chr5B 95.781 237 10 0 1788 2024 531825769 531825533 4.830000e-102 383.0
108 TraesCS3B01G090900 chr5B 90.741 270 12 6 1990 2246 660816977 660817246 1.760000e-91 348.0
109 TraesCS3B01G090900 chr5B 87.745 204 13 2 2055 2246 531825534 531825331 2.390000e-55 228.0
110 TraesCS3B01G090900 chrUn 93.117 247 15 1 3308 3554 2018715 2018959 2.260000e-95 361.0
111 TraesCS3B01G090900 chrUn 93.117 247 15 1 3308 3554 358865486 358865242 2.260000e-95 361.0
112 TraesCS3B01G090900 chrUn 91.498 247 19 2 3061 3306 221213368 221213613 1.060000e-88 339.0
113 TraesCS3B01G090900 chr1A 89.091 275 13 6 1989 2246 41715140 41715414 8.250000e-85 326.0
114 TraesCS3B01G090900 chr2A 89.516 248 21 3 3308 3555 12190523 12190765 8.310000e-80 309.0
115 TraesCS3B01G090900 chr2A 85.830 247 30 2 3308 3554 12209613 12209854 3.050000e-64 257.0
116 TraesCS3B01G090900 chr6A 94.340 53 3 0 6088 6140 319937805 319937753 1.970000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G090900 chr3B 59960176 59968699 8523 True 15741.000000 15741 100.000000 1 8524 1 chr3B.!!$R1 8523
1 TraesCS3B01G090900 chr3B 59753471 59755376 1905 False 1200.000000 1317 90.083500 1 7500 2 chr3B.!!$F1 7499
2 TraesCS3B01G090900 chr3B 808461782 808467004 5222 True 746.333333 955 97.967000 861 2041 3 chr3B.!!$R3 1180
3 TraesCS3B01G090900 chr7B 161221953 161227718 5765 False 5095.500000 9788 99.063000 860 6490 2 chr7B.!!$F1 5630
4 TraesCS3B01G090900 chr1D 419115045 419117370 2325 True 3650.000000 3650 95.152000 859 3163 1 chr1D.!!$R3 2304
5 TraesCS3B01G090900 chr1D 419080201 419081105 904 True 1517.000000 1517 96.906000 5367 6271 1 chr1D.!!$R2 904
6 TraesCS3B01G090900 chr5A 705225664 705229541 3877 True 2875.000000 3520 95.416000 868 6490 2 chr5A.!!$R2 5622
7 TraesCS3B01G090900 chr5A 681639305 681639998 693 True 706.000000 706 85.000000 7807 8524 1 chr5A.!!$R1 717
8 TraesCS3B01G090900 chr5A 566645522 566646341 819 False 702.000000 702 82.572000 7714 8524 1 chr5A.!!$F1 810
9 TraesCS3B01G090900 chr5A 670320544 670321574 1030 False 698.500000 1182 90.397500 4521 5627 2 chr5A.!!$F3 1106
10 TraesCS3B01G090900 chr5A 683869520 683870212 692 False 676.000000 676 84.306000 7807 8524 1 chr5A.!!$F2 717
11 TraesCS3B01G090900 chr4A 678376992 678381721 4729 False 1403.750000 2699 95.018000 859 6490 4 chr4A.!!$F1 5631
12 TraesCS3B01G090900 chr7A 690709334 690715874 6540 False 961.800000 1764 93.004600 2245 6051 5 chr7A.!!$F1 3806
13 TraesCS3B01G090900 chr7A 543304122 543307538 3416 True 938.820000 1615 93.806000 2245 5883 5 chr7A.!!$R1 3638
14 TraesCS3B01G090900 chr3A 10025737 10028154 2417 True 1744.000000 1764 93.609500 3561 6049 2 chr3A.!!$R3 2488
15 TraesCS3B01G090900 chr3A 47584489 47586394 1905 False 1244.500000 1380 90.950500 1 7505 2 chr3A.!!$F6 7504
16 TraesCS3B01G090900 chr3A 47528106 47530007 1901 False 1220.500000 1369 90.562500 1 7500 2 chr3A.!!$F4 7499
17 TraesCS3B01G090900 chr3A 743895767 743897843 2076 True 998.000000 1722 94.245333 2454 4695 3 chr3A.!!$R5 2241
18 TraesCS3B01G090900 chr3A 47555802 47558104 2302 False 897.000000 1375 89.310000 1 7505 3 chr3A.!!$F5 7504
19 TraesCS3B01G090900 chr3A 647365221 647365791 570 False 819.000000 819 92.708000 2264 2831 1 chr3A.!!$F3 567
20 TraesCS3B01G090900 chr3A 662881064 662881633 569 True 819.000000 819 92.708000 2264 2831 1 chr3A.!!$R1 567
21 TraesCS3B01G090900 chr3A 243089863 243091544 1681 True 785.033333 1463 94.336000 4118 5883 3 chr3A.!!$R4 1765
22 TraesCS3B01G090900 chr3A 510669735 510670432 697 False 621.000000 621 83.119000 7843 8524 1 chr3A.!!$F1 681
23 TraesCS3B01G090900 chr2D 152013202 152014908 1706 True 845.566667 1748 95.385667 3556 5329 3 chr2D.!!$R1 1773
24 TraesCS3B01G090900 chr2B 618308376 618309226 850 True 1306.000000 1306 94.366000 5198 6049 1 chr2B.!!$R1 851
25 TraesCS3B01G090900 chr2B 528470109 528472519 2410 False 1143.700000 1718 94.306667 3561 6051 3 chr2B.!!$F5 2490
26 TraesCS3B01G090900 chr2B 245693576 245694114 538 False 562.000000 562 85.455000 7976 8524 1 chr2B.!!$F4 548
27 TraesCS3B01G090900 chr1B 681771881 681773842 1961 False 1461.000000 1679 94.719000 3561 6051 2 chr1B.!!$F2 2490
28 TraesCS3B01G090900 chr6B 26547189 26549507 2318 False 998.000000 1668 95.793000 2245 4695 3 chr6B.!!$F2 2450
29 TraesCS3B01G090900 chr6B 637116830 637117393 563 True 682.000000 682 88.462000 7954 8524 1 chr6B.!!$R3 570
30 TraesCS3B01G090900 chr6B 32446648 32447237 589 True 606.000000 606 85.191000 7925 8524 1 chr6B.!!$R1 599
31 TraesCS3B01G090900 chr3D 37539549 37540752 1203 True 1587.000000 1587 90.871000 6490 7664 1 chr3D.!!$R2 1174
32 TraesCS3B01G090900 chr3D 37450258 37451116 858 True 1358.000000 1358 95.139000 1 863 1 chr3D.!!$R1 862
33 TraesCS3B01G090900 chr3D 37247872 37249775 1903 False 1168.500000 1269 89.478000 1 7500 2 chr3D.!!$F1 7499
34 TraesCS3B01G090900 chr3D 37270380 37272290 1910 False 1158.500000 1271 89.241500 1 7500 2 chr3D.!!$F2 7499
35 TraesCS3B01G090900 chr3D 37440757 37443482 2725 True 971.333333 1101 90.290333 354 7539 3 chr3D.!!$R3 7185
36 TraesCS3B01G090900 chr3D 37525680 37526991 1311 True 869.500000 1587 91.344500 755 7664 2 chr3D.!!$R4 6909
37 TraesCS3B01G090900 chr3D 37532260 37532995 735 True 595.000000 944 97.154500 49 759 2 chr3D.!!$R5 710
38 TraesCS3B01G090900 chr3D 535744650 535748125 3475 False 457.500000 588 88.469000 3061 6298 2 chr3D.!!$F4 3237
39 TraesCS3B01G090900 chr3D 37289537 37290435 898 False 381.000000 542 94.792500 1 7664 2 chr3D.!!$F3 7663
40 TraesCS3B01G090900 chr4D 346193563 346195269 1706 False 1027.000000 1544 95.133500 860 2246 2 chr4D.!!$F1 1386
41 TraesCS3B01G090900 chr7D 247749073 247749837 764 True 1138.000000 1138 93.636000 2245 3005 1 chr7D.!!$R1 760
42 TraesCS3B01G090900 chr5D 555495168 555496010 842 True 833.000000 833 85.089000 7709 8524 1 chr5D.!!$R1 815
43 TraesCS3B01G090900 chr5B 596548868 596549574 706 False 684.000000 684 84.444000 7819 8524 1 chr5B.!!$F1 705
44 TraesCS3B01G090900 chr5B 531825331 531826484 1153 True 385.333333 545 92.714667 1331 2246 3 chr5B.!!$R2 915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 1678 2.347490 GTTCCTGCAGGCTTCGGA 59.653 61.111 28.91 6.99 34.44 4.55 F
1253 2786 2.852180 CGTCACACGGTGGAGGTCA 61.852 63.158 13.48 0.00 38.08 4.02 F
3033 11557 5.948162 AGTTGAAGACATGGATATTGCTGTT 59.052 36.000 0.00 0.00 0.00 3.16 F
3431 11956 2.159198 GGCCATGGCTTGTTGATTAGTG 60.159 50.000 34.70 0.00 41.60 2.74 F
3432 11957 2.736400 GCCATGGCTTGTTGATTAGTGC 60.736 50.000 29.98 0.00 38.26 4.40 F
3826 12382 6.699575 AAATTCCATTCTTATCAAGGGTCG 57.300 37.500 0.00 0.00 0.00 4.79 F
6349 15776 3.565063 TGAAAACGTAAGGCTAACAACCC 59.435 43.478 0.00 0.00 46.39 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3033 11557 3.901222 TCCATCCCTTTATATGTGCTCGA 59.099 43.478 0.0 0.0 0.00 4.04 R
3431 11956 3.084070 AGCAAACAACAAAGCTACTGC 57.916 42.857 0.0 0.0 35.19 4.40 R
4596 13371 3.963428 GGTCAGAACCTACAGACACAT 57.037 47.619 0.0 0.0 42.80 3.21 R
5177 14577 7.797819 AGAAAAGCAAACTAAATGTAGACGAG 58.202 34.615 0.0 0.0 0.00 4.18 R
5819 15223 0.449388 CCTTGAAGATGCGTGGCTTC 59.551 55.000 0.0 0.0 40.62 3.86 R
6373 15800 1.884235 TTCACACACACACACACACA 58.116 45.000 0.0 0.0 0.00 3.72 R
8255 18636 0.249398 AAAGTTCTCGCTGCCCGTAT 59.751 50.000 0.0 0.0 38.35 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 3.378427 GGTTATGGCTGATTCACAAGGAC 59.622 47.826 0.00 0.00 0.00 3.85
104 106 4.760204 GTCCACAAGGCTGTAAGTAACATT 59.240 41.667 0.00 0.00 37.50 2.71
244 275 5.163723 CCATTGTATGTTGGTGTAGCTCAAG 60.164 44.000 0.00 0.00 0.00 3.02
410 1233 9.881649 CTAATATTGCTATGTGTCCATGTCTAT 57.118 33.333 0.00 0.00 32.29 1.98
479 1302 9.727627 CATAGCTGATGAACTAAAAGAAAATCC 57.272 33.333 0.00 0.00 37.82 3.01
630 1453 2.766263 TCTCTCTTGTCACCTGTGTGTT 59.234 45.455 0.00 0.00 43.26 3.32
744 1570 4.950926 CACACTTTGCTCGTATTCAGAAG 58.049 43.478 0.00 0.00 0.00 2.85
786 1613 3.573967 CAGTACCACAAATTTTGCTCCCT 59.426 43.478 9.04 0.00 0.00 4.20
788 1615 2.676748 ACCACAAATTTTGCTCCCTGA 58.323 42.857 9.04 0.00 0.00 3.86
851 1678 2.347490 GTTCCTGCAGGCTTCGGA 59.653 61.111 28.91 6.99 34.44 4.55
1253 2786 2.852180 CGTCACACGGTGGAGGTCA 61.852 63.158 13.48 0.00 38.08 4.02
1963 7467 6.759272 TCGCTAATAGCATATTTTCAGAGGT 58.241 36.000 13.15 0.00 42.58 3.85
3033 11557 5.948162 AGTTGAAGACATGGATATTGCTGTT 59.052 36.000 0.00 0.00 0.00 3.16
3431 11956 2.159198 GGCCATGGCTTGTTGATTAGTG 60.159 50.000 34.70 0.00 41.60 2.74
3432 11957 2.736400 GCCATGGCTTGTTGATTAGTGC 60.736 50.000 29.98 0.00 38.26 4.40
3826 12382 6.699575 AAATTCCATTCTTATCAAGGGTCG 57.300 37.500 0.00 0.00 0.00 4.79
4596 13371 9.460019 TGGTTGAATAGTACAAATCAATGATCA 57.540 29.630 0.00 0.00 34.62 2.92
6349 15776 3.565063 TGAAAACGTAAGGCTAACAACCC 59.435 43.478 0.00 0.00 46.39 4.11
6373 15800 9.892130 CCCTTAGTTCAATGTTACTAGAGAAAT 57.108 33.333 0.00 0.00 0.00 2.17
6418 16327 2.172717 GCTGTATGGGGTACAATGAGGT 59.827 50.000 0.00 0.00 42.50 3.85
6464 16373 4.704103 ACGCTCTCAGGAGGCCCA 62.704 66.667 0.00 0.00 39.80 5.36
6517 16426 1.145738 ACAGCATTTCACTCCTTGGGT 59.854 47.619 0.00 0.00 0.00 4.51
6558 16467 5.647589 CCATATACGTATAACATGCCGAGT 58.352 41.667 18.69 0.00 0.00 4.18
6608 16517 5.945191 TGCATCAAGAAATCAATCTACACCA 59.055 36.000 0.00 0.00 0.00 4.17
6622 16531 5.623956 TCTACACCAACAGGTATTATGGG 57.376 43.478 0.00 0.00 37.26 4.00
6675 16588 8.922931 TTTAATCCTTAATGCATCAGCTGATA 57.077 30.769 28.27 15.09 42.74 2.15
6708 16621 1.006878 TCCATCCATGCCCATGTTCAA 59.993 47.619 7.42 0.00 37.11 2.69
6795 16710 1.614317 GCCAACCAAGCCTCACATACT 60.614 52.381 0.00 0.00 0.00 2.12
6824 16741 7.195646 CGAATGGTATGAATGTAAATGCACTT 58.804 34.615 0.00 0.00 0.00 3.16
6837 16754 2.064434 TGCACTTTGTGATGGTTCCA 57.936 45.000 1.52 0.00 35.23 3.53
6859 16776 0.109597 GGGCTTCGCACAAACTGATG 60.110 55.000 0.00 0.00 0.00 3.07
6865 16782 4.142816 GCTTCGCACAAACTGATGATACTT 60.143 41.667 0.00 0.00 0.00 2.24
6874 16792 7.118245 CACAAACTGATGATACTTTCTGTGCTA 59.882 37.037 0.00 0.00 0.00 3.49
6913 16831 2.043992 ACACCACTACCACTGCTGTAA 58.956 47.619 0.00 0.00 0.00 2.41
6931 16849 2.115343 AAATTCTTCTGACCCGGAGC 57.885 50.000 0.73 0.00 0.00 4.70
6935 16853 1.738099 CTTCTGACCCGGAGCAACG 60.738 63.158 0.73 0.00 0.00 4.10
6950 16869 3.589988 AGCAACGACATCTTGTAAGGAG 58.410 45.455 0.00 0.00 0.00 3.69
7011 16931 3.916761 AGTTTTACTTGCCATGCATGTG 58.083 40.909 24.58 16.68 44.51 3.21
7013 16933 3.300852 TTTACTTGCCATGCATGTGTG 57.699 42.857 24.58 11.18 44.51 3.82
7037 16957 7.548780 GTGTAAATTGGCCATTTATGTCAATGT 59.451 33.333 6.09 0.00 39.16 2.71
7050 16972 8.877864 TTTATGTCAATGTAGGGTGATTTTCT 57.122 30.769 0.00 0.00 0.00 2.52
7074 16996 9.666626 TCTGTTTGGTTGTATATTTTGTTTACG 57.333 29.630 0.00 0.00 0.00 3.18
7134 17056 4.833478 ACAGCTTGAGTCATTATCAGGT 57.167 40.909 0.00 0.00 0.00 4.00
7175 17097 0.813821 GGTGAAGCAATGGAAGCTCC 59.186 55.000 0.00 0.00 42.53 4.70
7216 17138 0.391130 GGCCAGCGATACTGTTGACA 60.391 55.000 0.00 0.00 45.68 3.58
7228 17150 3.609853 ACTGTTGACATTGCATCCGTAT 58.390 40.909 0.00 0.00 0.00 3.06
7272 17211 2.390599 CCACTTCGGCACCATCGTG 61.391 63.158 0.00 0.00 43.35 4.35
7355 17301 7.095910 CGCTGATTCCTAACATCTCTATCAAT 58.904 38.462 0.00 0.00 0.00 2.57
7371 17317 8.099537 TCTCTATCAATCTGGAATTTAGATGGC 58.900 37.037 6.85 0.00 35.20 4.40
7552 17904 9.676861 AGGTAAGGTTTAATGGTATCAGTTTAC 57.323 33.333 0.00 0.00 0.00 2.01
7582 17934 1.917303 CGACAACAACCAAAAGTGCAC 59.083 47.619 9.40 9.40 0.00 4.57
7621 17973 4.428294 AATAGCTGCAGCCTCTAAATCA 57.572 40.909 34.39 9.27 43.38 2.57
7664 18016 2.014128 GGAGCTAAATGGCGCTAAACA 58.986 47.619 7.64 0.00 36.45 2.83
7665 18017 2.618709 GGAGCTAAATGGCGCTAAACAT 59.381 45.455 7.64 0.00 36.45 2.71
7666 18018 3.813166 GGAGCTAAATGGCGCTAAACATA 59.187 43.478 7.64 0.00 36.45 2.29
7667 18019 4.319549 GGAGCTAAATGGCGCTAAACATAC 60.320 45.833 7.64 0.00 36.45 2.39
7668 18020 4.451900 AGCTAAATGGCGCTAAACATACT 58.548 39.130 7.64 0.00 34.11 2.12
7669 18021 4.881850 AGCTAAATGGCGCTAAACATACTT 59.118 37.500 7.64 0.00 34.11 2.24
7670 18022 5.007724 AGCTAAATGGCGCTAAACATACTTC 59.992 40.000 7.64 0.00 34.11 3.01
7671 18023 4.632538 AAATGGCGCTAAACATACTTCC 57.367 40.909 7.64 0.00 0.00 3.46
7672 18024 3.560636 ATGGCGCTAAACATACTTCCT 57.439 42.857 7.64 0.00 0.00 3.36
7673 18025 4.682778 ATGGCGCTAAACATACTTCCTA 57.317 40.909 7.64 0.00 0.00 2.94
7674 18026 4.475051 TGGCGCTAAACATACTTCCTAA 57.525 40.909 7.64 0.00 0.00 2.69
7675 18027 5.031066 TGGCGCTAAACATACTTCCTAAT 57.969 39.130 7.64 0.00 0.00 1.73
7676 18028 6.164417 TGGCGCTAAACATACTTCCTAATA 57.836 37.500 7.64 0.00 0.00 0.98
7677 18029 6.584488 TGGCGCTAAACATACTTCCTAATAA 58.416 36.000 7.64 0.00 0.00 1.40
7678 18030 7.221450 TGGCGCTAAACATACTTCCTAATAAT 58.779 34.615 7.64 0.00 0.00 1.28
7679 18031 7.386848 TGGCGCTAAACATACTTCCTAATAATC 59.613 37.037 7.64 0.00 0.00 1.75
7680 18032 7.386848 GGCGCTAAACATACTTCCTAATAATCA 59.613 37.037 7.64 0.00 0.00 2.57
7681 18033 8.936864 GCGCTAAACATACTTCCTAATAATCAT 58.063 33.333 0.00 0.00 0.00 2.45
7693 18045 9.804758 CTTCCTAATAATCATATACTCGAACCC 57.195 37.037 0.00 0.00 0.00 4.11
7694 18046 8.888836 TCCTAATAATCATATACTCGAACCCA 57.111 34.615 0.00 0.00 0.00 4.51
7695 18047 9.316594 TCCTAATAATCATATACTCGAACCCAA 57.683 33.333 0.00 0.00 0.00 4.12
7696 18048 9.367444 CCTAATAATCATATACTCGAACCCAAC 57.633 37.037 0.00 0.00 0.00 3.77
7697 18049 9.367444 CTAATAATCATATACTCGAACCCAACC 57.633 37.037 0.00 0.00 0.00 3.77
7698 18050 3.720949 TCATATACTCGAACCCAACCG 57.279 47.619 0.00 0.00 0.00 4.44
7699 18051 3.289836 TCATATACTCGAACCCAACCGA 58.710 45.455 0.00 0.00 0.00 4.69
7702 18054 2.434359 CTCGAACCCAACCGAGGC 60.434 66.667 0.00 0.00 45.93 4.70
7703 18055 3.952628 CTCGAACCCAACCGAGGCC 62.953 68.421 0.00 0.00 45.93 5.19
7704 18056 4.016706 CGAACCCAACCGAGGCCT 62.017 66.667 3.86 3.86 0.00 5.19
7705 18057 2.434774 GAACCCAACCGAGGCCTT 59.565 61.111 6.77 0.00 0.00 4.35
7706 18058 1.971695 GAACCCAACCGAGGCCTTG 60.972 63.158 13.75 13.75 0.00 3.61
7707 18059 4.660938 ACCCAACCGAGGCCTTGC 62.661 66.667 15.36 0.00 0.00 4.01
7774 18135 4.468689 CGACCGCCCTTTCCTCCC 62.469 72.222 0.00 0.00 0.00 4.30
7896 18258 1.215647 CTTCTCCCCGTTCCTCGTG 59.784 63.158 0.00 0.00 37.94 4.35
8196 18577 2.204090 ATCTGGGTTGGGTCGGGT 60.204 61.111 0.00 0.00 0.00 5.28
8263 18644 4.367023 GGCGGCGATATACGGGCA 62.367 66.667 12.98 0.00 42.83 5.36
8274 18655 0.249398 ATACGGGCAGCGAGAACTTT 59.751 50.000 0.00 0.00 0.00 2.66
8357 18739 0.984995 GTAGGGCCTGACAAGTCCTT 59.015 55.000 18.53 0.00 0.00 3.36
8374 18756 2.142357 CTTGTCTCCGCGTCTGGTCA 62.142 60.000 4.92 0.00 0.00 4.02
8379 18761 2.357517 CCGCGTCTGGTCAGCTTT 60.358 61.111 4.92 0.00 0.00 3.51
8426 18808 1.073722 ACCGGTCGAGTAGTGGTCA 59.926 57.895 0.00 0.00 0.00 4.02
8445 18827 0.687354 ACTCTCGTGGCCATTGTCTT 59.313 50.000 9.72 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 0.394352 AAGCCATAACCCTTGCTCCG 60.394 55.000 0.00 0.00 32.62 4.63
244 275 0.799393 GCTCGTCTTTCCTCTTTGCC 59.201 55.000 0.00 0.00 0.00 4.52
448 1271 8.932945 TCTTTTAGTTCATCAGCTATGTGTAG 57.067 34.615 0.00 0.00 36.89 2.74
679 1502 0.840617 TAACCTTGTGCTGTGTCCCA 59.159 50.000 0.00 0.00 0.00 4.37
695 1521 8.391106 CCTAGAAACAATGTCAGTAGCATTAAC 58.609 37.037 0.00 0.00 35.09 2.01
744 1570 1.222113 GGGTGCTAGAACTCCTGCC 59.778 63.158 0.00 0.00 0.00 4.85
786 1613 1.582968 GGCCGACGTAGAACTGTCA 59.417 57.895 0.00 0.00 34.78 3.58
788 1615 1.874345 CTGGGCCGACGTAGAACTGT 61.874 60.000 0.00 0.00 0.00 3.55
1253 2786 1.802960 CACAGAGTACGACGTACCAGT 59.197 52.381 29.43 22.61 39.58 4.00
3033 11557 3.901222 TCCATCCCTTTATATGTGCTCGA 59.099 43.478 0.00 0.00 0.00 4.04
3431 11956 3.084070 AGCAAACAACAAAGCTACTGC 57.916 42.857 0.00 0.00 35.19 4.40
3432 11957 4.671377 TCAAGCAAACAACAAAGCTACTG 58.329 39.130 0.00 0.00 36.07 2.74
3817 12373 2.631160 ACACAAATGACGACCCTTGA 57.369 45.000 0.00 0.00 0.00 3.02
3826 12382 5.869350 CCGAAGAGGAAATACACAAATGAC 58.131 41.667 0.00 0.00 45.00 3.06
4596 13371 3.963428 GGTCAGAACCTACAGACACAT 57.037 47.619 0.00 0.00 42.80 3.21
5177 14577 7.797819 AGAAAAGCAAACTAAATGTAGACGAG 58.202 34.615 0.00 0.00 0.00 4.18
5819 15223 0.449388 CCTTGAAGATGCGTGGCTTC 59.551 55.000 0.00 0.00 40.62 3.86
6373 15800 1.884235 TTCACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
6374 15801 2.979401 TTTCACACACACACACACAC 57.021 45.000 0.00 0.00 0.00 3.82
6418 16327 0.102844 GCACTTGCCTTGTTGAAGCA 59.897 50.000 0.00 0.00 34.31 3.91
6517 16426 4.513519 CGTCATGCCGCTAGGAAA 57.486 55.556 0.00 0.00 41.02 3.13
6583 16492 6.604396 TGGTGTAGATTGATTTCTTGATGCAT 59.396 34.615 0.00 0.00 0.00 3.96
6608 16517 6.789457 TCATCTCTCATCCCATAATACCTGTT 59.211 38.462 0.00 0.00 0.00 3.16
6692 16605 4.715792 ACATAATTTGAACATGGGCATGGA 59.284 37.500 0.00 0.00 42.91 3.41
6695 16608 5.187381 TGTGACATAATTTGAACATGGGCAT 59.813 36.000 0.00 0.00 0.00 4.40
6708 16621 8.730680 GGTGAATTGACTACTTGTGACATAATT 58.269 33.333 0.00 0.00 0.00 1.40
6795 16710 6.502652 CATTTACATTCATACCATTCGGCAA 58.497 36.000 0.00 0.00 34.57 4.52
6859 16776 6.637658 GGAATAGACGTAGCACAGAAAGTATC 59.362 42.308 0.00 0.00 0.00 2.24
6865 16782 4.744570 CTTGGAATAGACGTAGCACAGAA 58.255 43.478 0.00 0.00 0.00 3.02
6874 16792 3.746492 GTGTTCTTGCTTGGAATAGACGT 59.254 43.478 0.00 0.00 0.00 4.34
6913 16831 0.984230 TGCTCCGGGTCAGAAGAATT 59.016 50.000 0.00 0.00 0.00 2.17
6931 16849 4.810790 ACTCTCCTTACAAGATGTCGTTG 58.189 43.478 0.00 0.00 0.00 4.10
6935 16853 4.966965 TCGACTCTCCTTACAAGATGTC 57.033 45.455 0.00 0.00 0.00 3.06
6950 16869 6.380190 AGCACGTCCTAATATAATTCGACTC 58.620 40.000 0.00 0.00 0.00 3.36
7001 16920 2.931325 GCCAATTTACACACATGCATGG 59.069 45.455 29.41 20.05 0.00 3.66
7011 16931 7.548780 ACATTGACATAAATGGCCAATTTACAC 59.451 33.333 10.96 10.36 42.22 2.90
7013 16933 9.248291 CTACATTGACATAAATGGCCAATTTAC 57.752 33.333 10.96 4.95 42.22 2.01
7037 16957 5.205056 ACAACCAAACAGAAAATCACCCTA 58.795 37.500 0.00 0.00 0.00 3.53
7050 16972 9.798994 AACGTAAACAAAATATACAACCAAACA 57.201 25.926 0.00 0.00 0.00 2.83
7074 16996 1.442769 TCTCGCCTTGAATCTGCAAC 58.557 50.000 0.00 0.00 0.00 4.17
7123 17045 3.199946 GTCACCTTCCCACCTGATAATGA 59.800 47.826 0.00 0.00 0.00 2.57
7134 17056 1.852157 GCATCCCTGTCACCTTCCCA 61.852 60.000 0.00 0.00 0.00 4.37
7175 17097 2.545526 TCTTCAACTTTGCTTCTCTGCG 59.454 45.455 0.00 0.00 35.36 5.18
7216 17138 4.564782 AGGATGATGATACGGATGCAAT 57.435 40.909 0.00 0.00 0.00 3.56
7228 17150 3.620719 GCACTCAAGGTCAAGGATGATGA 60.621 47.826 0.00 0.00 38.01 2.92
7283 17222 1.361668 AAGCATGGTTAGCAGCGTCG 61.362 55.000 8.73 0.00 0.00 5.12
7355 17301 3.523157 TGTCCAGCCATCTAAATTCCAGA 59.477 43.478 0.00 0.00 0.00 3.86
7371 17317 7.391554 TCAGGAATCTTCTTAAACATTGTCCAG 59.608 37.037 0.00 0.00 0.00 3.86
7404 17752 9.613428 TCTTGACCGAAAATATCATGAAGTATT 57.387 29.630 0.00 0.00 0.00 1.89
7405 17753 9.265901 CTCTTGACCGAAAATATCATGAAGTAT 57.734 33.333 0.00 0.00 0.00 2.12
7552 17904 1.997606 GGTTGTTGTCGTCCCGATTAG 59.002 52.381 0.00 0.00 38.42 1.73
7582 17934 6.372659 CAGCTATTTACCATAGCACCCTATTG 59.627 42.308 14.67 1.03 46.93 1.90
7621 17973 6.058183 CCTGTTTAGTGCCAATAATCTAGCT 58.942 40.000 0.00 0.00 0.00 3.32
7667 18019 9.804758 GGGTTCGAGTATATGATTATTAGGAAG 57.195 37.037 0.00 0.00 0.00 3.46
7668 18020 9.316594 TGGGTTCGAGTATATGATTATTAGGAA 57.683 33.333 0.00 0.00 0.00 3.36
7669 18021 8.888836 TGGGTTCGAGTATATGATTATTAGGA 57.111 34.615 0.00 0.00 0.00 2.94
7670 18022 9.367444 GTTGGGTTCGAGTATATGATTATTAGG 57.633 37.037 0.00 0.00 0.00 2.69
7671 18023 9.367444 GGTTGGGTTCGAGTATATGATTATTAG 57.633 37.037 0.00 0.00 0.00 1.73
7672 18024 8.030692 CGGTTGGGTTCGAGTATATGATTATTA 58.969 37.037 0.00 0.00 0.00 0.98
7673 18025 6.872020 CGGTTGGGTTCGAGTATATGATTATT 59.128 38.462 0.00 0.00 0.00 1.40
7674 18026 6.209986 TCGGTTGGGTTCGAGTATATGATTAT 59.790 38.462 0.00 0.00 0.00 1.28
7675 18027 5.535783 TCGGTTGGGTTCGAGTATATGATTA 59.464 40.000 0.00 0.00 0.00 1.75
7676 18028 4.342951 TCGGTTGGGTTCGAGTATATGATT 59.657 41.667 0.00 0.00 0.00 2.57
7677 18029 3.893200 TCGGTTGGGTTCGAGTATATGAT 59.107 43.478 0.00 0.00 0.00 2.45
7678 18030 3.289836 TCGGTTGGGTTCGAGTATATGA 58.710 45.455 0.00 0.00 0.00 2.15
7679 18031 3.639538 CTCGGTTGGGTTCGAGTATATG 58.360 50.000 0.00 0.00 45.27 1.78
7686 18038 4.011517 GGCCTCGGTTGGGTTCGA 62.012 66.667 0.00 0.00 0.00 3.71
7687 18039 3.546714 AAGGCCTCGGTTGGGTTCG 62.547 63.158 5.23 0.00 0.00 3.95
7688 18040 1.971695 CAAGGCCTCGGTTGGGTTC 60.972 63.158 5.23 0.00 0.00 3.62
7689 18041 2.115266 CAAGGCCTCGGTTGGGTT 59.885 61.111 5.23 0.00 0.00 4.11
7690 18042 4.660938 GCAAGGCCTCGGTTGGGT 62.661 66.667 5.23 0.00 0.00 4.51
7756 18117 3.387947 GGAGGAAAGGGCGGTCGA 61.388 66.667 0.00 0.00 0.00 4.20
7877 18239 3.696084 CGAGGAACGGGGAGAAGT 58.304 61.111 0.00 0.00 38.46 3.01
7970 18338 3.379445 GAAGGACAGGCCCGTCGA 61.379 66.667 12.98 0.00 36.73 4.20
8167 18548 2.444696 CCAGATGGGGCCCAAACA 59.555 61.111 32.57 13.63 36.95 2.83
8253 18634 1.329256 AGTTCTCGCTGCCCGTATAT 58.671 50.000 0.00 0.00 38.35 0.86
8255 18636 0.249398 AAAGTTCTCGCTGCCCGTAT 59.751 50.000 0.00 0.00 38.35 3.06
8263 18644 1.217882 CGACCAACAAAGTTCTCGCT 58.782 50.000 0.00 0.00 0.00 4.93
8295 18676 3.311110 GGCAGTCCCTGTCACCGA 61.311 66.667 0.00 0.00 35.96 4.69
8357 18739 2.596338 TGACCAGACGCGGAGACA 60.596 61.111 12.47 0.00 0.00 3.41
8361 18743 2.867855 AAAGCTGACCAGACGCGGA 61.868 57.895 12.47 0.00 0.00 5.54
8445 18827 0.618968 GAGGCCTGGAGAGGGAAAGA 60.619 60.000 12.00 0.00 40.19 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.