Multiple sequence alignment - TraesCS3B01G090200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G090200 chr3B 100.000 4833 0 0 1 4833 59430302 59435134 0.000000e+00 8925.0
1 TraesCS3B01G090200 chr3B 79.919 742 123 17 93 823 415662527 415663253 5.540000e-144 521.0
2 TraesCS3B01G090200 chr3B 80.147 136 23 4 4580 4714 728906292 728906160 1.110000e-16 99.0
3 TraesCS3B01G090200 chr3A 88.928 4814 334 71 137 4832 47246018 47250750 0.000000e+00 5753.0
4 TraesCS3B01G090200 chr3A 97.297 37 1 0 4076 4112 571797957 571797993 4.040000e-06 63.9
5 TraesCS3B01G090200 chr3A 97.222 36 1 0 4077 4112 661792643 661792678 1.450000e-05 62.1
6 TraesCS3B01G090200 chr3D 91.256 4060 254 38 99 4100 36975644 36979660 0.000000e+00 5437.0
7 TraesCS3B01G090200 chr3D 90.523 306 26 3 4264 4569 36979930 36980232 7.530000e-108 401.0
8 TraesCS3B01G090200 chr3D 90.148 203 17 2 4124 4324 36979734 36979935 1.330000e-65 261.0
9 TraesCS3B01G090200 chr3D 95.960 99 4 0 4734 4832 36980570 36980668 1.390000e-35 161.0
10 TraesCS3B01G090200 chr3D 75.415 301 58 8 4436 4722 518554706 518554408 1.090000e-26 132.0
11 TraesCS3B01G090200 chr3D 97.222 36 1 0 4077 4112 527148238 527148273 1.450000e-05 62.1
12 TraesCS3B01G090200 chr3D 92.105 38 2 1 4077 4114 11445149 11445113 9.000000e-03 52.8
13 TraesCS3B01G090200 chr5B 81.924 686 98 14 93 766 447559912 447560583 1.520000e-154 556.0
14 TraesCS3B01G090200 chr1B 82.006 678 99 11 93 759 589132578 589133243 5.470000e-154 555.0
15 TraesCS3B01G090200 chr1B 81.431 657 99 11 121 766 642813024 642813668 2.580000e-142 516.0
16 TraesCS3B01G090200 chr1B 97.222 36 1 0 4077 4112 610355110 610355075 1.450000e-05 62.1
17 TraesCS3B01G090200 chr1B 97.222 36 1 0 4077 4112 629854898 629854933 1.450000e-05 62.1
18 TraesCS3B01G090200 chr7B 82.090 670 96 12 108 766 191893420 191892764 7.070000e-153 551.0
19 TraesCS3B01G090200 chr6B 81.606 685 103 12 93 766 339351207 339351879 3.290000e-151 545.0
20 TraesCS3B01G090200 chr6B 81.606 685 103 11 93 766 599981228 599981900 3.290000e-151 545.0
21 TraesCS3B01G090200 chr6B 98.039 102 2 0 1 102 271754867 271754766 1.380000e-40 178.0
22 TraesCS3B01G090200 chr6B 97.143 105 2 1 1 105 36963989 36963886 4.970000e-40 176.0
23 TraesCS3B01G090200 chr6B 92.857 42 3 0 4071 4112 152083223 152083182 1.450000e-05 62.1
24 TraesCS3B01G090200 chr6B 97.143 35 1 0 4078 4112 481269300 481269266 5.220000e-05 60.2
25 TraesCS3B01G090200 chr4B 82.205 635 94 13 93 719 562615383 562616006 3.310000e-146 529.0
26 TraesCS3B01G090200 chr4B 82.324 413 60 8 99 506 143306199 143305795 3.580000e-91 346.0
27 TraesCS3B01G090200 chr4B 78.276 580 96 24 93 659 481633979 481634541 3.580000e-91 346.0
28 TraesCS3B01G090200 chr4B 92.308 39 3 0 4065 4103 226396228 226396266 6.760000e-04 56.5
29 TraesCS3B01G090200 chr4B 96.970 33 0 1 4071 4103 600523447 600523478 2.000000e-03 54.7
30 TraesCS3B01G090200 chr2A 80.908 639 102 15 109 739 459549352 459548726 2.020000e-133 486.0
31 TraesCS3B01G090200 chr7A 78.679 666 108 16 1 656 665737279 665737920 3.480000e-111 412.0
32 TraesCS3B01G090200 chr5A 77.793 743 116 31 99 822 531896546 531895834 3.480000e-111 412.0
33 TraesCS3B01G090200 chr4D 77.333 675 115 25 99 759 166011780 166011130 9.890000e-97 364.0
34 TraesCS3B01G090200 chr1A 76.401 678 124 28 93 757 381313603 381312949 2.790000e-87 333.0
35 TraesCS3B01G090200 chr1A 89.796 49 3 2 4065 4112 564146537 564146584 1.450000e-05 62.1
36 TraesCS3B01G090200 chr1A 100.000 28 0 0 4076 4103 91593626 91593599 9.000000e-03 52.8
37 TraesCS3B01G090200 chr5D 79.250 400 67 10 93 487 362290951 362291339 1.030000e-66 265.0
38 TraesCS3B01G090200 chr5D 100.000 28 0 0 4076 4103 123088848 123088821 9.000000e-03 52.8
39 TraesCS3B01G090200 chr7D 98.113 106 1 1 1 106 364677716 364677820 2.970000e-42 183.0
40 TraesCS3B01G090200 chr7D 97.143 105 2 1 1 105 244894462 244894359 4.970000e-40 176.0
41 TraesCS3B01G090200 chr7D 97.115 104 3 0 1 104 582879353 582879250 4.970000e-40 176.0
42 TraesCS3B01G090200 chr7D 91.870 123 6 4 1 119 202948539 202948417 8.320000e-38 169.0
43 TraesCS3B01G090200 chr7D 100.000 28 0 0 4076 4103 89286588 89286615 9.000000e-03 52.8
44 TraesCS3B01G090200 chr4A 94.690 113 3 2 1 113 340475067 340475176 6.430000e-39 172.0
45 TraesCS3B01G090200 chr4A 94.444 36 2 0 4077 4112 415855915 415855880 6.760000e-04 56.5
46 TraesCS3B01G090200 chr1D 97.938 97 2 0 1 97 203998185 203998281 8.320000e-38 169.0
47 TraesCS3B01G090200 chr1D 97.143 35 1 0 4078 4112 446426962 446426928 5.220000e-05 60.2
48 TraesCS3B01G090200 chrUn 92.500 40 0 3 4067 4103 110336359 110336320 2.000000e-03 54.7
49 TraesCS3B01G090200 chrUn 96.774 31 1 0 4073 4103 45996664 45996694 9.000000e-03 52.8
50 TraesCS3B01G090200 chr2D 94.286 35 2 0 4077 4111 624283431 624283397 2.000000e-03 54.7
51 TraesCS3B01G090200 chr2D 100.000 28 0 0 4076 4103 207478819 207478792 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G090200 chr3B 59430302 59435134 4832 False 8925 8925 100.00000 1 4833 1 chr3B.!!$F1 4832
1 TraesCS3B01G090200 chr3B 415662527 415663253 726 False 521 521 79.91900 93 823 1 chr3B.!!$F2 730
2 TraesCS3B01G090200 chr3A 47246018 47250750 4732 False 5753 5753 88.92800 137 4832 1 chr3A.!!$F1 4695
3 TraesCS3B01G090200 chr3D 36975644 36980668 5024 False 1565 5437 91.97175 99 4832 4 chr3D.!!$F2 4733
4 TraesCS3B01G090200 chr5B 447559912 447560583 671 False 556 556 81.92400 93 766 1 chr5B.!!$F1 673
5 TraesCS3B01G090200 chr1B 589132578 589133243 665 False 555 555 82.00600 93 759 1 chr1B.!!$F1 666
6 TraesCS3B01G090200 chr1B 642813024 642813668 644 False 516 516 81.43100 121 766 1 chr1B.!!$F3 645
7 TraesCS3B01G090200 chr7B 191892764 191893420 656 True 551 551 82.09000 108 766 1 chr7B.!!$R1 658
8 TraesCS3B01G090200 chr6B 339351207 339351879 672 False 545 545 81.60600 93 766 1 chr6B.!!$F1 673
9 TraesCS3B01G090200 chr6B 599981228 599981900 672 False 545 545 81.60600 93 766 1 chr6B.!!$F2 673
10 TraesCS3B01G090200 chr4B 562615383 562616006 623 False 529 529 82.20500 93 719 1 chr4B.!!$F3 626
11 TraesCS3B01G090200 chr4B 481633979 481634541 562 False 346 346 78.27600 93 659 1 chr4B.!!$F2 566
12 TraesCS3B01G090200 chr2A 459548726 459549352 626 True 486 486 80.90800 109 739 1 chr2A.!!$R1 630
13 TraesCS3B01G090200 chr7A 665737279 665737920 641 False 412 412 78.67900 1 656 1 chr7A.!!$F1 655
14 TraesCS3B01G090200 chr5A 531895834 531896546 712 True 412 412 77.79300 99 822 1 chr5A.!!$R1 723
15 TraesCS3B01G090200 chr4D 166011130 166011780 650 True 364 364 77.33300 99 759 1 chr4D.!!$R1 660
16 TraesCS3B01G090200 chr1A 381312949 381313603 654 True 333 333 76.40100 93 757 1 chr1A.!!$R2 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.322816 TGCTGCATCACCCTTTCCTC 60.323 55.0 0.00 0.0 0.00 3.71 F
883 940 0.468585 ACACGTGGTGACCTGAGGTA 60.469 55.0 21.57 0.0 35.25 3.08 F
1489 1557 0.603065 CTTTTCCCCCTTCCGCTTTG 59.397 55.0 0.00 0.0 0.00 2.77 F
2956 3078 0.593263 GCGTGCTGCAATCTTATGCC 60.593 55.0 2.77 0.0 45.83 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2042 0.179124 CCGACTGCTCTAGTGGAAGC 60.179 60.0 0.0 0.0 40.53 3.86 R
2316 2427 0.312102 GCAACTTCTCACAAGCACCC 59.688 55.0 0.0 0.0 0.00 4.61 R
3250 3372 0.730834 CAGAGAGAACAGGCACGACG 60.731 60.0 0.0 0.0 0.00 5.12 R
4582 4843 0.107410 TGTCTGGTTCCTGCGTTTGT 60.107 50.0 0.0 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.770897 ACTGAGGGAAATACTTATGCTACTTTG 59.229 37.037 0.00 0.00 0.00 2.77
57 58 0.322816 TGCTGCATCACCCTTTCCTC 60.323 55.000 0.00 0.00 0.00 3.71
58 59 1.034292 GCTGCATCACCCTTTCCTCC 61.034 60.000 0.00 0.00 0.00 4.30
60 61 0.620556 TGCATCACCCTTTCCTCCTC 59.379 55.000 0.00 0.00 0.00 3.71
75 76 1.880027 CTCCTCAAGGGAAAACCAACG 59.120 52.381 0.00 0.00 44.58 4.10
158 168 1.067142 CGAATCACCTTCTCACCCGAA 60.067 52.381 0.00 0.00 0.00 4.30
198 208 1.303309 GATATGCAGCTTTGCGGACT 58.697 50.000 0.00 0.00 37.69 3.85
267 280 2.430367 GGGGCAACACTCCGAAGT 59.570 61.111 0.00 0.00 36.63 3.01
344 365 1.040339 GGAAACCACACCTGCCAACA 61.040 55.000 0.00 0.00 0.00 3.33
418 442 1.470098 GACCACAATTCGCATCTGCTT 59.530 47.619 0.09 0.00 39.32 3.91
424 448 1.661341 ATTCGCATCTGCTTCTGGAC 58.339 50.000 0.09 0.00 39.32 4.02
514 558 1.575244 CATGAGAATGTCGCCGTCAT 58.425 50.000 0.00 0.00 0.00 3.06
554 599 4.768968 CAGACTGGTTTCCAAATTCATCCT 59.231 41.667 0.00 0.00 30.80 3.24
685 733 2.943033 CGAAGGCCTAAAAACGATCCAT 59.057 45.455 5.16 0.00 0.00 3.41
686 734 3.002348 CGAAGGCCTAAAAACGATCCATC 59.998 47.826 5.16 0.00 0.00 3.51
714 763 1.123928 GATCCGACAACCCTCCTCAT 58.876 55.000 0.00 0.00 0.00 2.90
728 777 3.007723 CCTCCTCATCACCAATGATCGAT 59.992 47.826 0.00 0.00 44.13 3.59
729 778 4.221482 CCTCCTCATCACCAATGATCGATA 59.779 45.833 0.00 0.00 44.13 2.92
775 832 2.506472 GATGGAAGGAGACGCCCC 59.494 66.667 0.00 0.00 37.37 5.80
825 882 5.559148 TTCTTCCTGAGAAAGAAAGAGCT 57.441 39.130 0.00 0.00 41.34 4.09
838 895 3.488090 GAGCTTGGTACGGTGCGC 61.488 66.667 0.00 0.00 0.00 6.09
883 940 0.468585 ACACGTGGTGACCTGAGGTA 60.469 55.000 21.57 0.00 35.25 3.08
891 948 2.159142 GGTGACCTGAGGTAACATACGG 60.159 54.545 20.52 0.00 38.79 4.02
892 949 1.479323 TGACCTGAGGTAACATACGGC 59.521 52.381 2.97 0.00 35.25 5.68
969 1026 2.026729 CCCTTCACTTTTCTCTCCTCCC 60.027 54.545 0.00 0.00 0.00 4.30
970 1027 2.026729 CCTTCACTTTTCTCTCCTCCCC 60.027 54.545 0.00 0.00 0.00 4.81
971 1028 1.657804 TCACTTTTCTCTCCTCCCCC 58.342 55.000 0.00 0.00 0.00 5.40
974 1031 1.439143 ACTTTTCTCTCCTCCCCCTCT 59.561 52.381 0.00 0.00 0.00 3.69
1260 1323 4.426313 GGGTACTGGGTGCAGGGC 62.426 72.222 0.00 0.00 0.00 5.19
1489 1557 0.603065 CTTTTCCCCCTTCCGCTTTG 59.397 55.000 0.00 0.00 0.00 2.77
1491 1559 2.366153 TTTCCCCCTTCCGCTTTGCT 62.366 55.000 0.00 0.00 0.00 3.91
1540 1608 6.638610 TCATTTGTTGGAAATTGTTGTGTCT 58.361 32.000 0.00 0.00 0.00 3.41
1544 1612 5.788450 TGTTGGAAATTGTTGTGTCTGTTT 58.212 33.333 0.00 0.00 0.00 2.83
1546 1614 6.809196 TGTTGGAAATTGTTGTGTCTGTTTAC 59.191 34.615 0.00 0.00 0.00 2.01
1551 1619 8.592155 GGAAATTGTTGTGTCTGTTTACTTTTC 58.408 33.333 0.00 0.00 0.00 2.29
1556 1624 9.834628 TTGTTGTGTCTGTTTACTTTTCTTTAG 57.165 29.630 0.00 0.00 0.00 1.85
1557 1625 9.221933 TGTTGTGTCTGTTTACTTTTCTTTAGA 57.778 29.630 0.00 0.00 0.00 2.10
1611 1686 5.007136 GGTCATCTCGGCTTAAAATTCTCAG 59.993 44.000 0.00 0.00 0.00 3.35
1635 1710 3.902881 AGAAGTACTGAGAGCCCAATG 57.097 47.619 0.00 0.00 0.00 2.82
1636 1711 3.445008 AGAAGTACTGAGAGCCCAATGA 58.555 45.455 0.00 0.00 0.00 2.57
1707 1786 1.798813 GAGTACAAGGGTTCAACAGCG 59.201 52.381 0.00 0.00 0.00 5.18
1732 1811 6.204359 GCAGCTATATTGTCCAATTTGACAG 58.796 40.000 11.73 2.72 45.37 3.51
1837 1919 5.705609 GGTACCAATTTCACTGTGTGATT 57.294 39.130 7.15 6.63 42.40 2.57
1940 2042 4.083802 GGTCAGCTGTTGTAGTTTAAGCAG 60.084 45.833 14.67 0.00 36.32 4.24
1975 2079 2.229302 AGTCGGCACTTGTTCTAGAGAC 59.771 50.000 0.00 0.00 0.00 3.36
1977 2081 2.826128 TCGGCACTTGTTCTAGAGACAT 59.174 45.455 8.08 0.00 0.00 3.06
2008 2112 5.381757 TGGAAAGCAACATGGGTATATACC 58.618 41.667 21.88 21.88 45.71 2.73
2029 2133 2.029828 CAGAGTAGTCGGCACTTGTTCT 60.030 50.000 0.00 0.00 33.62 3.01
2031 2135 2.987821 GAGTAGTCGGCACTTGTTCTTC 59.012 50.000 0.00 0.00 33.62 2.87
2037 2141 2.631062 TCGGCACTTGTTCTTCCTAGAA 59.369 45.455 0.00 0.00 38.06 2.10
2102 2206 3.444742 TGCCGGAGAGAAAGATACGTTTA 59.555 43.478 5.05 0.00 0.00 2.01
2126 2230 1.228063 CACACTGCACCTTCCTGCT 60.228 57.895 0.00 0.00 38.07 4.24
2156 2260 3.193903 TGTGTACGCCACTCTTATTGCTA 59.806 43.478 3.51 0.00 44.81 3.49
2200 2304 4.641989 CCAAGTTGGTAAATCCCAGAGATG 59.358 45.833 14.21 0.00 35.49 2.90
2266 2370 2.160219 CAGAATGATTGGTGGTCACACG 59.840 50.000 3.40 0.00 44.19 4.49
2410 2521 2.279918 CCCATGCTACGCCGTACC 60.280 66.667 0.00 0.00 0.00 3.34
2411 2522 2.497293 CCATGCTACGCCGTACCA 59.503 61.111 0.00 0.00 0.00 3.25
2509 2630 5.133941 TGTTTGTTACCTGCTGGTTTCATA 58.866 37.500 21.33 11.96 46.05 2.15
2510 2631 5.772672 TGTTTGTTACCTGCTGGTTTCATAT 59.227 36.000 21.33 0.00 46.05 1.78
2518 2639 4.096984 CCTGCTGGTTTCATATTTCCTGTC 59.903 45.833 0.51 0.00 0.00 3.51
2535 2656 4.954202 TCCTGTCCGTGACTATGTAAGAAT 59.046 41.667 5.77 0.00 33.15 2.40
2536 2657 5.043903 CCTGTCCGTGACTATGTAAGAATG 58.956 45.833 5.77 0.00 33.15 2.67
2548 2669 7.048512 ACTATGTAAGAATGCTTTGGTCCTAC 58.951 38.462 0.00 0.00 35.56 3.18
2590 2711 4.687901 AAAACCTGCTGCTGGTAAATTT 57.312 36.364 28.10 21.57 34.63 1.82
2646 2768 7.615582 TTCAGTGGTTATCTTTCTATGCAAG 57.384 36.000 0.00 0.00 0.00 4.01
2726 2848 8.862550 ATGAAGCCTTAAAATCGAATGAATTC 57.137 30.769 0.00 0.00 0.00 2.17
2731 2853 8.522830 AGCCTTAAAATCGAATGAATTCTTCAA 58.477 29.630 7.05 0.00 43.95 2.69
2737 2859 9.492973 AAAATCGAATGAATTCTTCAATTGGTT 57.507 25.926 5.42 0.00 43.95 3.67
2758 2880 6.206634 TGGTTTATGCTAATATTGGCTACTGC 59.793 38.462 22.40 11.09 35.49 4.40
2803 2925 2.427506 CTTACTGCTTGGGGAACACTC 58.572 52.381 0.00 0.00 0.00 3.51
2941 3063 3.515316 AACACAGAGGACCGGCGTG 62.515 63.158 6.01 2.06 0.00 5.34
2956 3078 0.593263 GCGTGCTGCAATCTTATGCC 60.593 55.000 2.77 0.00 45.83 4.40
3155 3277 4.047142 CCTTCTTGTCAAAAGCTCTTTGC 58.953 43.478 13.33 10.32 43.29 3.68
3160 3282 1.730547 CAAAAGCTCTTTGCCGGCG 60.731 57.895 23.90 7.87 44.23 6.46
3250 3372 1.017387 GGATCATGACCTCGTTTGCC 58.983 55.000 0.00 0.00 0.00 4.52
3331 3453 3.000082 TCATCGATCATCGGTCTTTCG 58.000 47.619 7.33 0.00 40.88 3.46
3400 3522 1.133976 CGCCATCTCAAAAGGATCCCT 60.134 52.381 8.55 0.00 33.87 4.20
3409 3531 1.077429 AAGGATCCCTTTGAGGCGC 60.077 57.895 8.55 0.00 41.69 6.53
3454 3576 3.345808 GCTTTCGCGGTGCTGTCA 61.346 61.111 6.13 0.00 0.00 3.58
3458 3580 2.363711 TTTCGCGGTGCTGTCAGAGT 62.364 55.000 6.13 0.00 0.00 3.24
3466 3588 2.497675 GGTGCTGTCAGAGTTGATCCTA 59.502 50.000 3.32 0.00 35.39 2.94
3649 3771 3.394274 TCACCTCTGGATTGGTCTTTTCA 59.606 43.478 0.00 0.00 33.75 2.69
3838 3960 2.411748 TGTAAAGCAAAGATGACGAGCG 59.588 45.455 0.00 0.00 0.00 5.03
3877 3999 8.012957 AGTAGATCTTGTTAGGTACTGAATGG 57.987 38.462 0.00 0.00 41.52 3.16
3965 4107 3.552294 TGTACACAACACATACACACACG 59.448 43.478 0.00 0.00 31.43 4.49
3966 4108 1.329292 ACACAACACATACACACACGC 59.671 47.619 0.00 0.00 0.00 5.34
3967 4109 0.579630 ACAACACATACACACACGCG 59.420 50.000 3.53 3.53 0.00 6.01
3968 4110 0.721155 CAACACATACACACACGCGC 60.721 55.000 5.73 0.00 0.00 6.86
3969 4111 2.093799 CACATACACACACGCGCG 59.906 61.111 30.96 30.96 0.00 6.86
3970 4112 3.773630 ACATACACACACGCGCGC 61.774 61.111 32.58 23.91 0.00 6.86
4005 4147 5.827797 ACACACACACAGATTCCAAAATAGT 59.172 36.000 0.00 0.00 0.00 2.12
4104 4246 1.129811 CCGTCCCAAAATAAGTGTCGC 59.870 52.381 0.00 0.00 0.00 5.19
4115 4319 6.569179 AAATAAGTGTCGCTGGTTTAACAT 57.431 33.333 0.00 0.00 0.00 2.71
4125 4329 7.921214 TGTCGCTGGTTTAACATTTATTTTGAA 59.079 29.630 0.00 0.00 0.00 2.69
4128 4332 8.760569 CGCTGGTTTAACATTTATTTTGAAACT 58.239 29.630 0.00 0.00 0.00 2.66
4215 4421 3.055094 ACTTCCATGGTGAGGTACATGAC 60.055 47.826 12.58 0.00 45.55 3.06
4287 4493 9.846248 ATCTTCATATTTGAACAAGTTTGCTAC 57.154 29.630 0.00 0.00 36.94 3.58
4408 4669 2.990740 ACCCCCAAAGTTAAGCATGA 57.009 45.000 0.00 0.00 0.00 3.07
4410 4671 3.790126 ACCCCCAAAGTTAAGCATGATT 58.210 40.909 0.17 0.17 0.00 2.57
4530 4791 0.719465 CGTATTTGAAAGCGGCGAGT 59.281 50.000 12.98 0.00 0.00 4.18
4575 4836 5.280945 CCAAACAACTGTGGTTTACATCTG 58.719 41.667 12.70 1.12 38.92 2.90
4578 4839 3.815401 ACAACTGTGGTTTACATCTGCTC 59.185 43.478 0.00 0.00 38.92 4.26
4580 4841 3.668447 ACTGTGGTTTACATCTGCTCAG 58.332 45.455 0.00 0.00 38.92 3.35
4581 4842 2.417933 CTGTGGTTTACATCTGCTCAGC 59.582 50.000 0.00 0.00 38.92 4.26
4582 4843 2.224499 TGTGGTTTACATCTGCTCAGCA 60.224 45.455 0.00 0.00 33.42 4.41
4584 4845 2.224499 TGGTTTACATCTGCTCAGCACA 60.224 45.455 0.00 0.00 33.79 4.57
4585 4846 2.813754 GGTTTACATCTGCTCAGCACAA 59.186 45.455 0.00 0.00 33.79 3.33
4587 4848 4.222114 GTTTACATCTGCTCAGCACAAAC 58.778 43.478 0.00 0.00 33.79 2.93
4588 4849 0.870393 ACATCTGCTCAGCACAAACG 59.130 50.000 0.00 0.00 33.79 3.60
4591 4852 1.082300 CTGCTCAGCACAAACGCAG 60.082 57.895 0.00 0.00 41.57 5.18
4592 4853 2.253452 GCTCAGCACAAACGCAGG 59.747 61.111 0.00 0.00 0.00 4.85
4598 4868 1.008538 GCACAAACGCAGGAACCAG 60.009 57.895 0.00 0.00 0.00 4.00
4604 4874 2.031012 CGCAGGAACCAGACAGCA 59.969 61.111 0.00 0.00 0.00 4.41
4620 4890 4.716784 AGACAGCAGTCCTTAATATGTCCA 59.283 41.667 5.52 0.00 46.15 4.02
4621 4891 5.028549 ACAGCAGTCCTTAATATGTCCAG 57.971 43.478 0.00 0.00 0.00 3.86
4622 4892 4.471386 ACAGCAGTCCTTAATATGTCCAGT 59.529 41.667 0.00 0.00 0.00 4.00
4623 4893 5.661312 ACAGCAGTCCTTAATATGTCCAGTA 59.339 40.000 0.00 0.00 0.00 2.74
4624 4894 6.156256 ACAGCAGTCCTTAATATGTCCAGTAA 59.844 38.462 0.00 0.00 0.00 2.24
4626 4896 7.172190 CAGCAGTCCTTAATATGTCCAGTAATG 59.828 40.741 0.00 0.00 0.00 1.90
4627 4897 6.992715 GCAGTCCTTAATATGTCCAGTAATGT 59.007 38.462 0.00 0.00 0.00 2.71
4628 4898 8.148351 GCAGTCCTTAATATGTCCAGTAATGTA 58.852 37.037 0.00 0.00 0.00 2.29
4632 4902 9.502091 TCCTTAATATGTCCAGTAATGTAATGC 57.498 33.333 0.00 0.00 0.00 3.56
4633 4903 9.283768 CCTTAATATGTCCAGTAATGTAATGCA 57.716 33.333 0.00 0.00 0.00 3.96
4636 4906 8.696043 AATATGTCCAGTAATGTAATGCATGT 57.304 30.769 0.00 0.00 37.96 3.21
4639 4909 7.552458 TGTCCAGTAATGTAATGCATGTTAG 57.448 36.000 0.00 0.00 37.96 2.34
4783 5305 4.546570 GTTGAGTGGCAAATTAAGTCACC 58.453 43.478 10.81 5.10 42.36 4.02
4827 5349 1.340248 CATGCAATCTCCATCCAAGGC 59.660 52.381 0.00 0.00 0.00 4.35
4832 5354 0.259938 ATCTCCATCCAAGGCCAACC 59.740 55.000 5.01 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.167851 GGTGATGCAGCAAAGTAGCA 58.832 50.000 6.05 0.00 43.14 3.49
39 40 1.034292 GGAGGAAAGGGTGATGCAGC 61.034 60.000 0.00 0.00 0.00 5.25
57 58 0.313987 GCGTTGGTTTTCCCTTGAGG 59.686 55.000 0.00 0.00 39.73 3.86
58 59 1.028905 TGCGTTGGTTTTCCCTTGAG 58.971 50.000 0.00 0.00 39.73 3.02
60 61 1.782044 CATGCGTTGGTTTTCCCTTG 58.218 50.000 0.00 0.00 39.73 3.61
75 76 3.465990 TGCTACCTCTTGAGCATGC 57.534 52.632 10.51 10.51 43.64 4.06
158 168 2.034879 CAATGGAGTCGCGCCAAGT 61.035 57.895 8.03 0.00 36.81 3.16
198 208 2.513395 TGGCGAGCCACTTTGGAA 59.487 55.556 13.49 0.00 40.96 3.53
216 226 2.028294 TCAACGGTAATGGTTTCGCCTA 60.028 45.455 0.00 0.00 38.35 3.93
262 275 1.772182 GATGCTATGTCCGGACTTCG 58.228 55.000 33.39 23.78 38.88 3.79
263 276 1.337071 TCGATGCTATGTCCGGACTTC 59.663 52.381 33.39 19.50 0.00 3.01
264 277 1.399714 TCGATGCTATGTCCGGACTT 58.600 50.000 33.39 28.81 0.00 3.01
265 278 1.067212 GTTCGATGCTATGTCCGGACT 59.933 52.381 33.39 21.29 0.00 3.85
266 279 1.067212 AGTTCGATGCTATGTCCGGAC 59.933 52.381 28.17 28.17 0.00 4.79
267 280 1.399714 AGTTCGATGCTATGTCCGGA 58.600 50.000 0.00 0.00 0.00 5.14
277 290 3.001736 GTGCCAGATCTAAAGTTCGATGC 59.998 47.826 0.00 0.00 0.00 3.91
344 365 1.679153 GTGTTGGGTTCATGGTTCGTT 59.321 47.619 0.00 0.00 0.00 3.85
418 442 1.152030 AGCTTGGGAGGTGTCCAGA 60.152 57.895 0.00 0.00 46.07 3.86
514 558 3.327757 AGTCTGTTCAAGTAAGGATGGCA 59.672 43.478 0.00 0.00 0.00 4.92
554 599 2.562738 AGGCGATCGGTCATATGATTGA 59.437 45.455 18.30 10.21 0.00 2.57
728 777 4.337060 CGCCATCCGCCGACGATA 62.337 66.667 0.00 0.00 43.93 2.92
824 881 1.080298 TTTATGCGCACCGTACCAAG 58.920 50.000 14.90 0.00 0.00 3.61
825 882 1.666700 GATTTATGCGCACCGTACCAA 59.333 47.619 14.90 0.00 0.00 3.67
838 895 5.066375 TCGGCAAGGACAAAGATGATTTATG 59.934 40.000 0.00 0.00 0.00 1.90
883 940 3.906720 ACTGTATGGAAGCCGTATGTT 57.093 42.857 0.00 0.00 0.00 2.71
891 948 4.657436 AGTAGCTGTACTGTATGGAAGC 57.343 45.455 0.00 0.00 38.14 3.86
892 949 5.278561 GCCTAGTAGCTGTACTGTATGGAAG 60.279 48.000 0.00 0.00 39.96 3.46
969 1026 2.437359 CGAGGCCTTTGCAGAGGG 60.437 66.667 23.77 10.88 40.13 4.30
970 1027 1.743252 GTCGAGGCCTTTGCAGAGG 60.743 63.158 18.91 18.91 40.13 3.69
971 1028 1.743252 GGTCGAGGCCTTTGCAGAG 60.743 63.158 6.77 0.00 40.13 3.35
974 1031 2.347490 GAGGTCGAGGCCTTTGCA 59.653 61.111 6.77 0.00 39.34 4.08
1489 1557 1.680207 AGAAGGGGTCGTAATCGTAGC 59.320 52.381 0.00 0.00 38.33 3.58
1491 1559 3.624777 AGAAGAAGGGGTCGTAATCGTA 58.375 45.455 0.00 0.00 38.33 3.43
1563 1631 9.173021 ACCTCAATTATCACATTTGTTTCGATA 57.827 29.630 0.00 0.00 0.00 2.92
1625 1700 3.245052 GGCAGGTATATTCATTGGGCTCT 60.245 47.826 0.00 0.00 0.00 4.09
1627 1702 2.446666 TGGCAGGTATATTCATTGGGCT 59.553 45.455 0.00 0.00 0.00 5.19
1628 1703 2.875296 TGGCAGGTATATTCATTGGGC 58.125 47.619 0.00 0.00 0.00 5.36
1629 1704 6.248433 ACTATTGGCAGGTATATTCATTGGG 58.752 40.000 0.00 0.00 0.00 4.12
1630 1705 7.765695 AACTATTGGCAGGTATATTCATTGG 57.234 36.000 0.00 0.00 0.00 3.16
1631 1706 8.849168 TGAAACTATTGGCAGGTATATTCATTG 58.151 33.333 0.00 0.00 0.00 2.82
1632 1707 8.995027 TGAAACTATTGGCAGGTATATTCATT 57.005 30.769 0.00 0.00 0.00 2.57
1633 1708 7.667219 CCTGAAACTATTGGCAGGTATATTCAT 59.333 37.037 0.00 0.00 42.26 2.57
1634 1709 6.998074 CCTGAAACTATTGGCAGGTATATTCA 59.002 38.462 0.00 0.00 42.26 2.57
1635 1710 7.440523 CCTGAAACTATTGGCAGGTATATTC 57.559 40.000 0.00 0.00 42.26 1.75
1707 1786 5.067674 TGTCAAATTGGACAATATAGCTGCC 59.932 40.000 13.47 0.00 44.34 4.85
1716 1795 3.508793 CAGCTCCTGTCAAATTGGACAAT 59.491 43.478 16.42 0.00 46.36 2.71
1732 1811 2.937433 GCTCCCTAGTTTTCACAGCTCC 60.937 54.545 0.00 0.00 0.00 4.70
1765 1847 6.792250 GTGAAATCAAACGTTGTCACTATCAG 59.208 38.462 0.00 0.00 34.05 2.90
1940 2042 0.179124 CCGACTGCTCTAGTGGAAGC 60.179 60.000 0.00 0.00 40.53 3.86
1975 2079 6.128227 CCCATGTTGCTTTCCAAACAATTATG 60.128 38.462 0.00 0.00 34.68 1.90
1977 2081 5.163258 ACCCATGTTGCTTTCCAAACAATTA 60.163 36.000 0.00 0.00 34.68 1.40
2008 2112 2.029828 AGAACAAGTGCCGACTACTCTG 60.030 50.000 0.00 0.00 0.00 3.35
2029 2133 4.588951 TGCAGACAAGTCTTCTTCTAGGAA 59.411 41.667 0.00 0.00 37.98 3.36
2031 2135 4.527509 TGCAGACAAGTCTTCTTCTAGG 57.472 45.455 0.00 0.00 37.98 3.02
2037 2141 3.607741 CCATGATGCAGACAAGTCTTCT 58.392 45.455 0.00 0.00 37.98 2.85
2043 2147 4.082665 AGATACCCATGATGCAGACAAG 57.917 45.455 0.00 0.00 0.00 3.16
2102 2206 1.680338 GAAGGTGCAGTGTGTTTCCT 58.320 50.000 0.00 0.00 0.00 3.36
2126 2230 1.817209 TGGCGTACACACACACTGA 59.183 52.632 0.00 0.00 0.00 3.41
2156 2260 3.885484 CGAAGCTCAAAATGTGTGACT 57.115 42.857 0.00 0.00 0.00 3.41
2200 2304 3.707102 AGCCACCAGAATAGGAGTAAGTC 59.293 47.826 0.00 0.00 0.00 3.01
2266 2370 1.209019 TCTCTTGGCAAGGCTCAGATC 59.791 52.381 25.92 0.00 0.00 2.75
2316 2427 0.312102 GCAACTTCTCACAAGCACCC 59.688 55.000 0.00 0.00 0.00 4.61
2406 2517 3.054361 AGAACCTGTCCCAATCATGGTAC 60.054 47.826 0.00 0.00 46.01 3.34
2410 2521 3.828451 ACAAAGAACCTGTCCCAATCATG 59.172 43.478 0.00 0.00 0.00 3.07
2411 2522 3.828451 CACAAAGAACCTGTCCCAATCAT 59.172 43.478 0.00 0.00 0.00 2.45
2509 2630 5.421056 TCTTACATAGTCACGGACAGGAAAT 59.579 40.000 6.78 0.00 34.60 2.17
2510 2631 4.768448 TCTTACATAGTCACGGACAGGAAA 59.232 41.667 6.78 0.00 34.60 3.13
2518 2639 5.220662 CCAAAGCATTCTTACATAGTCACGG 60.221 44.000 0.00 0.00 31.02 4.94
2535 2656 5.298276 CAGTAAAAGTTGTAGGACCAAAGCA 59.702 40.000 0.00 0.00 0.00 3.91
2536 2657 5.298527 ACAGTAAAAGTTGTAGGACCAAAGC 59.701 40.000 0.00 0.00 0.00 3.51
2617 2738 7.917505 GCATAGAAAGATAACCACTGAAAATGG 59.082 37.037 0.00 0.00 43.43 3.16
2619 2740 8.579850 TGCATAGAAAGATAACCACTGAAAAT 57.420 30.769 0.00 0.00 0.00 1.82
2702 2824 8.055279 AGAATTCATTCGATTTTAAGGCTTCA 57.945 30.769 1.30 0.00 41.56 3.02
2726 2848 8.981647 GCCAATATTAGCATAAACCAATTGAAG 58.018 33.333 7.12 0.00 0.00 3.02
2731 2853 8.796475 CAGTAGCCAATATTAGCATAAACCAAT 58.204 33.333 8.59 0.00 0.00 3.16
2737 2859 6.427853 CACAGCAGTAGCCAATATTAGCATAA 59.572 38.462 8.59 0.00 43.56 1.90
2739 2861 4.758674 CACAGCAGTAGCCAATATTAGCAT 59.241 41.667 8.59 0.00 43.56 3.79
2747 2869 2.867109 AGTTCACAGCAGTAGCCAAT 57.133 45.000 0.00 0.00 43.56 3.16
2758 2880 6.304356 TGAAGTAATGCTGAAAGTTCACAG 57.696 37.500 5.88 5.88 35.30 3.66
2803 2925 1.559814 CGTAACTGGCATGATCGCG 59.440 57.895 0.00 0.00 0.00 5.87
2941 3063 4.082895 CCTATGAAGGCATAAGATTGCAGC 60.083 45.833 0.00 0.00 44.59 5.25
2956 3078 1.474677 CCAGCTGCCAGACCTATGAAG 60.475 57.143 8.66 0.00 0.00 3.02
3022 3144 6.303054 TGTGAACATAATCTTTGGTTCCTGA 58.697 36.000 0.00 0.00 39.02 3.86
3160 3282 6.743172 GGTTTGAGAATTGCTTACGAAGATTC 59.257 38.462 0.00 0.00 0.00 2.52
3169 3291 6.003326 TGTCATCAGGTTTGAGAATTGCTTA 58.997 36.000 0.00 0.00 36.61 3.09
3250 3372 0.730834 CAGAGAGAACAGGCACGACG 60.731 60.000 0.00 0.00 0.00 5.12
3331 3453 0.984230 TGACCTGTCCCATGACCTTC 59.016 55.000 0.00 0.00 41.01 3.46
3400 3522 2.664851 CACACGAGGCGCCTCAAA 60.665 61.111 45.57 0.00 42.86 2.69
3409 3531 1.734477 CTGAACTCCGCACACGAGG 60.734 63.158 0.00 0.00 43.93 4.63
3454 3576 4.530161 ACTTGCTTCACTAGGATCAACTCT 59.470 41.667 0.00 0.00 0.00 3.24
3458 3580 4.890158 TCACTTGCTTCACTAGGATCAA 57.110 40.909 0.00 0.00 0.00 2.57
3466 3588 3.503748 GCATAAGGTTCACTTGCTTCACT 59.496 43.478 0.00 0.00 40.37 3.41
3649 3771 3.402628 AACACACCACTTAGAATCGCT 57.597 42.857 0.00 0.00 0.00 4.93
3838 3960 9.593134 AACAAGATCTACTTCTGATGTCAATAC 57.407 33.333 0.00 0.00 36.61 1.89
3877 3999 6.458888 GGCTAGAAGAAATTCCTGTACATTGC 60.459 42.308 0.00 0.00 0.00 3.56
3974 4116 3.772000 CTGTGTGTGTGTGTGCGCG 62.772 63.158 0.00 0.00 0.00 6.86
3975 4117 1.775039 ATCTGTGTGTGTGTGTGCGC 61.775 55.000 0.00 0.00 0.00 6.09
3976 4118 0.657312 AATCTGTGTGTGTGTGTGCG 59.343 50.000 0.00 0.00 0.00 5.34
3977 4119 1.002468 GGAATCTGTGTGTGTGTGTGC 60.002 52.381 0.00 0.00 0.00 4.57
3978 4120 2.287769 TGGAATCTGTGTGTGTGTGTG 58.712 47.619 0.00 0.00 0.00 3.82
3979 4121 2.708216 TGGAATCTGTGTGTGTGTGT 57.292 45.000 0.00 0.00 0.00 3.72
4005 4147 5.772672 ACACCTTGCAGTTGGATGTATTTTA 59.227 36.000 9.06 0.00 0.00 1.52
4037 4179 8.573885 CCCAATGAAAGTATATACTGACGTAGA 58.426 37.037 16.11 0.00 36.50 2.59
4075 4217 3.889520 ATTTTGGGACGGAGAGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
4081 4223 3.615592 CGACACTTATTTTGGGACGGAGA 60.616 47.826 0.00 0.00 0.00 3.71
4179 4383 8.010697 TCACCATGGAAGTATCCTAGAAATAGA 58.989 37.037 21.47 0.00 46.70 1.98
4180 4384 8.195165 TCACCATGGAAGTATCCTAGAAATAG 57.805 38.462 21.47 0.00 46.70 1.73
4287 4493 7.428282 TGTTACATAGTGTGTACCACATTTG 57.572 36.000 14.39 11.04 46.32 2.32
4341 4602 2.949177 AGGTGCACCTTGTTGATACA 57.051 45.000 33.20 0.00 46.09 2.29
4384 4645 3.227614 TGCTTAACTTTGGGGGTTCTTC 58.772 45.455 0.00 0.00 0.00 2.87
4390 4651 3.118665 CCAATCATGCTTAACTTTGGGGG 60.119 47.826 0.00 0.00 31.97 5.40
4408 4669 5.984926 CCATTATCACGCAATTTAAGCCAAT 59.015 36.000 0.00 0.00 0.00 3.16
4410 4671 4.400884 ACCATTATCACGCAATTTAAGCCA 59.599 37.500 0.00 0.00 0.00 4.75
4463 4724 6.654582 AGCACACTTCACACATTTCACATATA 59.345 34.615 0.00 0.00 0.00 0.86
4512 4773 3.184541 TCTACTCGCCGCTTTCAAATAC 58.815 45.455 0.00 0.00 0.00 1.89
4526 4787 1.903139 CGCACGTAGTTGTTCTACTCG 59.097 52.381 0.00 0.00 44.80 4.18
4530 4791 2.715758 CGCGCACGTAGTTGTTCTA 58.284 52.632 8.75 0.00 41.61 2.10
4546 4807 1.588667 CACAGTTGTTTGGCCACGC 60.589 57.895 3.88 0.81 0.00 5.34
4550 4811 2.166664 TGTAAACCACAGTTGTTTGGCC 59.833 45.455 12.06 0.00 36.63 5.36
4575 4836 1.785041 TTCCTGCGTTTGTGCTGAGC 61.785 55.000 0.00 0.00 36.04 4.26
4578 4839 1.008538 GGTTCCTGCGTTTGTGCTG 60.009 57.895 0.00 0.00 35.36 4.41
4580 4841 1.008538 CTGGTTCCTGCGTTTGTGC 60.009 57.895 0.00 0.00 0.00 4.57
4581 4842 0.307760 GTCTGGTTCCTGCGTTTGTG 59.692 55.000 0.00 0.00 0.00 3.33
4582 4843 0.107410 TGTCTGGTTCCTGCGTTTGT 60.107 50.000 0.00 0.00 0.00 2.83
4584 4845 1.166531 GCTGTCTGGTTCCTGCGTTT 61.167 55.000 0.00 0.00 0.00 3.60
4585 4846 1.598130 GCTGTCTGGTTCCTGCGTT 60.598 57.895 0.00 0.00 0.00 4.84
4587 4848 2.031012 TGCTGTCTGGTTCCTGCG 59.969 61.111 0.00 0.00 0.00 5.18
4588 4849 0.952984 GACTGCTGTCTGGTTCCTGC 60.953 60.000 15.81 0.00 39.94 4.85
4591 4852 0.398318 AAGGACTGCTGTCTGGTTCC 59.602 55.000 21.27 6.27 42.54 3.62
4592 4853 3.402628 TTAAGGACTGCTGTCTGGTTC 57.597 47.619 21.27 6.30 42.54 3.62
4598 4868 5.023533 TGGACATATTAAGGACTGCTGTC 57.976 43.478 14.87 14.87 42.22 3.51
4620 4890 8.685427 TCATTTGCTAACATGCATTACATTACT 58.315 29.630 0.00 0.00 42.96 2.24
4621 4891 8.854979 TCATTTGCTAACATGCATTACATTAC 57.145 30.769 0.00 0.00 42.96 1.89
4622 4892 9.465985 CATCATTTGCTAACATGCATTACATTA 57.534 29.630 0.00 0.00 42.96 1.90
4623 4893 7.982919 ACATCATTTGCTAACATGCATTACATT 59.017 29.630 0.00 0.00 42.96 2.71
4624 4894 7.436970 CACATCATTTGCTAACATGCATTACAT 59.563 33.333 0.00 0.00 42.96 2.29
4626 4896 6.291955 GCACATCATTTGCTAACATGCATTAC 60.292 38.462 0.00 0.00 42.96 1.89
4627 4897 5.749588 GCACATCATTTGCTAACATGCATTA 59.250 36.000 0.00 0.00 42.96 1.90
4628 4898 4.569162 GCACATCATTTGCTAACATGCATT 59.431 37.500 0.00 0.00 42.96 3.56
4629 4899 4.116961 GCACATCATTTGCTAACATGCAT 58.883 39.130 0.00 0.00 42.96 3.96
4631 4901 3.305094 GTGCACATCATTTGCTAACATGC 59.695 43.478 13.17 0.00 40.86 4.06
4632 4902 4.487019 TGTGCACATCATTTGCTAACATG 58.513 39.130 17.42 0.00 40.86 3.21
4633 4903 4.787260 TGTGCACATCATTTGCTAACAT 57.213 36.364 17.42 0.00 40.86 2.71
4634 4904 4.202090 TGTTGTGCACATCATTTGCTAACA 60.202 37.500 23.43 16.14 41.27 2.41
4635 4905 4.297510 TGTTGTGCACATCATTTGCTAAC 58.702 39.130 23.43 13.89 40.86 2.34
4636 4906 4.581077 TGTTGTGCACATCATTTGCTAA 57.419 36.364 23.43 1.48 40.86 3.09
4639 4909 3.318886 TCATGTTGTGCACATCATTTGC 58.681 40.909 31.44 13.44 43.17 3.68
4722 4992 3.749088 CAGTTTAGTTACCCATCGCACAA 59.251 43.478 0.00 0.00 0.00 3.33
4723 4993 3.331150 CAGTTTAGTTACCCATCGCACA 58.669 45.455 0.00 0.00 0.00 4.57
4729 4999 3.078837 CAACGCCAGTTTAGTTACCCAT 58.921 45.455 0.00 0.00 38.79 4.00
4730 5000 2.104451 TCAACGCCAGTTTAGTTACCCA 59.896 45.455 0.00 0.00 38.79 4.51
4731 5001 2.769893 TCAACGCCAGTTTAGTTACCC 58.230 47.619 0.00 0.00 38.79 3.69
4732 5002 4.379082 CCAATCAACGCCAGTTTAGTTACC 60.379 45.833 0.00 0.00 38.79 2.85
4757 5279 3.059188 ACTTAATTTGCCACTCAACGTCG 60.059 43.478 0.00 0.00 33.73 5.12
4783 5305 2.034053 GGATGAGAGGCTAAGTCAGTCG 59.966 54.545 0.00 0.00 32.51 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.