Multiple sequence alignment - TraesCS3B01G089600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G089600 chr3B 100.000 5213 0 0 1 5213 59178989 59184201 0.000000e+00 9627.0
1 TraesCS3B01G089600 chr3B 81.733 750 105 23 1959 2682 59155187 59155930 9.660000e-167 597.0
2 TraesCS3B01G089600 chr3B 87.052 502 40 13 964 1457 59154517 59155001 1.280000e-150 544.0
3 TraesCS3B01G089600 chr3D 92.006 2039 115 16 1616 3633 36575913 36577924 0.000000e+00 2819.0
4 TraesCS3B01G089600 chr3D 90.959 907 70 8 3542 4442 36577920 36578820 0.000000e+00 1210.0
5 TraesCS3B01G089600 chr3D 94.066 792 32 9 670 1457 36573144 36573924 0.000000e+00 1188.0
6 TraesCS3B01G089600 chr3D 92.537 670 29 5 1 663 36571977 36572632 0.000000e+00 941.0
7 TraesCS3B01G089600 chr3D 84.810 790 61 25 4437 5196 36578873 36579633 0.000000e+00 739.0
8 TraesCS3B01G089600 chr3D 81.308 749 111 21 1960 2682 36544268 36545013 9.730000e-162 580.0
9 TraesCS3B01G089600 chr3D 77.927 965 159 36 2654 3586 36545043 36545985 2.120000e-153 553.0
10 TraesCS3B01G089600 chr3D 85.000 500 41 14 973 1457 36543640 36544120 1.310000e-130 477.0
11 TraesCS3B01G089600 chr3A 80.941 829 129 24 1876 2682 46987889 46988710 3.430000e-176 628.0
12 TraesCS3B01G089600 chr3A 86.983 484 39 15 973 1452 46985546 46986009 1.660000e-144 523.0
13 TraesCS3B01G089600 chr3A 79.346 673 102 26 2638 3297 46988718 46989366 6.200000e-119 438.0
14 TraesCS3B01G089600 chr3A 77.802 455 76 19 3828 4272 46989489 46989928 1.860000e-64 257.0
15 TraesCS3B01G089600 chr3A 91.667 168 13 1 1454 1620 13541143 13540976 1.130000e-56 231.0
16 TraesCS3B01G089600 chr2D 93.210 162 11 0 1456 1617 81004918 81004757 6.750000e-59 239.0
17 TraesCS3B01G089600 chr2D 92.593 162 12 0 1456 1617 362930969 362930808 3.140000e-57 233.0
18 TraesCS3B01G089600 chr1D 93.210 162 11 0 1456 1617 338937212 338937373 6.750000e-59 239.0
19 TraesCS3B01G089600 chr1D 86.250 80 7 3 1871 1948 470409322 470409399 3.350000e-12 84.2
20 TraesCS3B01G089600 chr1B 92.683 164 12 0 1454 1617 623195846 623195683 2.430000e-58 237.0
21 TraesCS3B01G089600 chr6B 92.638 163 11 1 1456 1618 487031928 487031767 3.140000e-57 233.0
22 TraesCS3B01G089600 chr6B 89.831 177 18 0 1456 1632 583051201 583051377 1.460000e-55 228.0
23 TraesCS3B01G089600 chr4D 91.228 171 15 0 1456 1626 437295926 437295756 3.140000e-57 233.0
24 TraesCS3B01G089600 chr2A 91.124 169 15 0 1456 1624 606381409 606381241 4.060000e-56 230.0
25 TraesCS3B01G089600 chr7B 78.689 122 21 4 1894 2012 218815287 218815168 5.600000e-10 76.8
26 TraesCS3B01G089600 chr5B 77.778 126 16 10 1894 2013 660592568 660592687 3.370000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G089600 chr3B 59178989 59184201 5212 False 9627.000000 9627 100.000000 1 5213 1 chr3B.!!$F1 5212
1 TraesCS3B01G089600 chr3B 59154517 59155930 1413 False 570.500000 597 84.392500 964 2682 2 chr3B.!!$F2 1718
2 TraesCS3B01G089600 chr3D 36571977 36579633 7656 False 1379.400000 2819 90.875600 1 5196 5 chr3D.!!$F2 5195
3 TraesCS3B01G089600 chr3D 36543640 36545985 2345 False 536.666667 580 81.411667 973 3586 3 chr3D.!!$F1 2613
4 TraesCS3B01G089600 chr3A 46985546 46989928 4382 False 461.500000 628 81.268000 973 4272 4 chr3A.!!$F1 3299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
336 339 0.038618 CGTCTTCATCACGTCCACCA 60.039 55.0 0.00 0.00 32.41 4.17 F
970 1487 0.312729 TAACTGACGTCGAGCAAGCA 59.687 50.0 11.62 0.00 0.00 3.91 F
2239 6533 0.033504 TGTGGAGCTTTCGTGAGGTC 59.966 55.0 10.19 10.19 42.07 3.85 F
3423 7818 0.038526 ACGTGACGTAAGGAAGCCAG 60.039 55.0 9.69 0.00 46.39 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 6533 0.962489 AGGGACAAGTGACAGACGAG 59.038 55.000 0.0 0.0 0.00 4.18 R
2242 6536 1.896465 AGCTAGGGACAAGTGACAGAC 59.104 52.381 0.0 0.0 0.00 3.51 R
3875 8373 0.625683 ATCTGGAAGGCTCATGGGGT 60.626 55.000 0.0 0.0 0.00 4.95 R
4707 9279 0.178964 TTGCACCAAGGGGAAAGAGG 60.179 55.000 0.0 0.0 38.05 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.022676 TCAGCCAATTTTCGGTAGGTTTTC 60.023 41.667 0.00 0.00 0.00 2.29
53 54 2.642154 TTTCGGTAGGTTTTCAGGCA 57.358 45.000 0.00 0.00 0.00 4.75
85 86 1.967066 ACAATTTCGGTCATTTGGCCA 59.033 42.857 0.00 0.00 40.62 5.36
96 97 4.023279 GGTCATTTGGCCAAATTGAAAACC 60.023 41.667 35.89 29.49 40.23 3.27
104 105 4.084066 GGCCAAATTGAAAACCGAAATCAC 60.084 41.667 0.00 0.00 0.00 3.06
127 128 6.420903 CACAGAGTTTCACTAGAATTCAACGA 59.579 38.462 8.44 0.00 32.89 3.85
267 270 2.970640 AGTAACCTTCCAGAAGAACCGT 59.029 45.455 9.00 0.00 40.79 4.83
291 294 3.256631 GGCGGGCATGAATATGAAAGATT 59.743 43.478 0.00 0.00 36.36 2.40
308 311 2.091994 AGATTGCAGATTTGAGGGGAGG 60.092 50.000 0.00 0.00 0.00 4.30
316 319 2.133858 TTTGAGGGGAGGAAAGAGGT 57.866 50.000 0.00 0.00 0.00 3.85
331 334 1.469308 AGAGGTCGTCTTCATCACGTC 59.531 52.381 0.00 0.00 38.45 4.34
332 335 0.526662 AGGTCGTCTTCATCACGTCC 59.473 55.000 0.98 0.98 43.28 4.79
333 336 0.242825 GGTCGTCTTCATCACGTCCA 59.757 55.000 4.04 0.00 42.72 4.02
334 337 1.337821 GTCGTCTTCATCACGTCCAC 58.662 55.000 0.00 0.00 38.45 4.02
335 338 0.242825 TCGTCTTCATCACGTCCACC 59.757 55.000 0.00 0.00 38.45 4.61
336 339 0.038618 CGTCTTCATCACGTCCACCA 60.039 55.000 0.00 0.00 32.41 4.17
337 340 1.714794 GTCTTCATCACGTCCACCAG 58.285 55.000 0.00 0.00 0.00 4.00
338 341 1.272490 GTCTTCATCACGTCCACCAGA 59.728 52.381 0.00 0.00 0.00 3.86
374 377 1.484038 AGTTTCCTGCAGGCAAACAA 58.516 45.000 35.83 23.52 37.52 2.83
396 399 5.912360 ACGTTCGATCGACTATACATACA 57.088 39.130 19.26 0.00 34.70 2.29
397 400 6.477669 ACGTTCGATCGACTATACATACAT 57.522 37.500 19.26 0.00 34.70 2.29
398 401 7.586714 ACGTTCGATCGACTATACATACATA 57.413 36.000 19.26 0.00 34.70 2.29
399 402 8.194433 ACGTTCGATCGACTATACATACATAT 57.806 34.615 19.26 0.00 34.70 1.78
400 403 9.305925 ACGTTCGATCGACTATACATACATATA 57.694 33.333 19.26 0.00 34.70 0.86
439 445 4.495422 ACTAACGAGCATTTCAGAATCGT 58.505 39.130 4.08 4.08 0.00 3.73
440 446 3.729526 AACGAGCATTTCAGAATCGTG 57.270 42.857 9.69 0.00 32.56 4.35
453 459 1.993370 GAATCGTGAAGTCCCTGAACG 59.007 52.381 0.00 0.00 35.64 3.95
456 462 1.137513 CGTGAAGTCCCTGAACGTTC 58.862 55.000 21.42 21.42 0.00 3.95
470 476 3.126171 TGAACGTTCCAATTAGCAATCCG 59.874 43.478 24.78 0.00 0.00 4.18
473 479 2.033299 CGTTCCAATTAGCAATCCGCAT 59.967 45.455 0.00 0.00 46.13 4.73
508 514 6.016777 AGCCATACTCAAAGTCAAGAACAAAG 60.017 38.462 0.00 0.00 0.00 2.77
515 521 1.670811 AGTCAAGAACAAAGTGCGGTG 59.329 47.619 0.00 0.00 0.00 4.94
518 524 1.608590 CAAGAACAAAGTGCGGTGGAT 59.391 47.619 0.00 0.00 0.00 3.41
568 574 5.647658 TGGATTGATAACTTGCTCAAACGAT 59.352 36.000 0.00 0.00 35.20 3.73
619 625 6.551385 AGAAGAAAGAAACATGCAGTACAG 57.449 37.500 0.00 0.00 0.00 2.74
643 649 1.002576 TGCATGCAGTTGTTCGTTGAG 60.003 47.619 18.46 0.00 0.00 3.02
646 652 3.125146 GCATGCAGTTGTTCGTTGAGATA 59.875 43.478 14.21 0.00 0.00 1.98
657 663 1.658373 CGTTGAGATACATGCATGCGC 60.658 52.381 26.53 15.29 39.24 6.09
658 664 1.600957 GTTGAGATACATGCATGCGCT 59.399 47.619 26.53 19.62 39.64 5.92
659 665 1.223187 TGAGATACATGCATGCGCTG 58.777 50.000 26.53 15.29 39.64 5.18
661 667 1.600957 GAGATACATGCATGCGCTGTT 59.399 47.619 26.53 15.42 39.64 3.16
664 670 3.627123 AGATACATGCATGCGCTGTTTTA 59.373 39.130 26.53 9.09 39.64 1.52
665 671 2.267188 ACATGCATGCGCTGTTTTAG 57.733 45.000 26.53 0.00 39.64 1.85
694 1207 0.744057 CATATGCGTGCAGGGTGTGA 60.744 55.000 8.72 0.00 0.00 3.58
695 1208 0.744414 ATATGCGTGCAGGGTGTGAC 60.744 55.000 8.72 0.00 0.00 3.67
807 1320 2.757099 AACCGTATCCGTCCGCCT 60.757 61.111 0.00 0.00 0.00 5.52
815 1328 1.464376 ATCCGTCCGCCTGATCGATT 61.464 55.000 0.00 0.00 0.00 3.34
875 1388 2.480555 CCGGCAAAGTGATCGTGC 59.519 61.111 0.00 2.77 37.55 5.34
915 1432 7.653713 AGCAGTATATATTTGACTTCCGACTTG 59.346 37.037 0.00 0.00 0.00 3.16
923 1440 3.511699 TGACTTCCGACTTGATCATTCG 58.488 45.455 16.61 16.61 0.00 3.34
937 1454 4.627035 TGATCATTCGGATGCGTATGATTC 59.373 41.667 31.41 25.05 36.82 2.52
949 1466 3.875884 CGTATGATTCGCATGCAATCAA 58.124 40.909 31.01 22.60 42.23 2.57
959 1476 3.479590 CGCATGCAATCAATTAACTGACG 59.520 43.478 19.57 0.00 0.00 4.35
970 1487 0.312729 TAACTGACGTCGAGCAAGCA 59.687 50.000 11.62 0.00 0.00 3.91
1062 1579 1.079127 CTCCGCCTACAACTGGGTG 60.079 63.158 0.00 0.00 0.00 4.61
1091 1608 0.940126 GGATGGTGAGTAGCGCAATG 59.060 55.000 11.47 0.00 0.00 2.82
1312 1836 2.582052 GCTCTCCTCTCTTAGCAGCTA 58.418 52.381 0.00 0.00 35.05 3.32
1328 1864 4.759183 AGCAGCTAACTCCTTTCTTTCTTG 59.241 41.667 0.00 0.00 0.00 3.02
1452 1990 6.708502 AGTTTCTTCTTTCTCTAGCTTTCACC 59.291 38.462 0.00 0.00 0.00 4.02
1453 1991 5.808366 TCTTCTTTCTCTAGCTTTCACCA 57.192 39.130 0.00 0.00 0.00 4.17
1455 1993 6.773638 TCTTCTTTCTCTAGCTTTCACCATT 58.226 36.000 0.00 0.00 0.00 3.16
1456 1994 7.907389 TCTTCTTTCTCTAGCTTTCACCATTA 58.093 34.615 0.00 0.00 0.00 1.90
1457 1995 7.819900 TCTTCTTTCTCTAGCTTTCACCATTAC 59.180 37.037 0.00 0.00 0.00 1.89
1458 1996 7.246171 TCTTTCTCTAGCTTTCACCATTACT 57.754 36.000 0.00 0.00 0.00 2.24
1459 1997 7.324178 TCTTTCTCTAGCTTTCACCATTACTC 58.676 38.462 0.00 0.00 0.00 2.59
1460 1998 5.599999 TCTCTAGCTTTCACCATTACTCC 57.400 43.478 0.00 0.00 0.00 3.85
1461 1999 4.406003 TCTCTAGCTTTCACCATTACTCCC 59.594 45.833 0.00 0.00 0.00 4.30
1462 2000 4.362677 TCTAGCTTTCACCATTACTCCCT 58.637 43.478 0.00 0.00 0.00 4.20
1463 2001 3.636153 AGCTTTCACCATTACTCCCTC 57.364 47.619 0.00 0.00 0.00 4.30
1464 2002 3.185455 AGCTTTCACCATTACTCCCTCT 58.815 45.455 0.00 0.00 0.00 3.69
1465 2003 3.054802 AGCTTTCACCATTACTCCCTCTG 60.055 47.826 0.00 0.00 0.00 3.35
1466 2004 3.307762 GCTTTCACCATTACTCCCTCTGT 60.308 47.826 0.00 0.00 0.00 3.41
1467 2005 4.807643 GCTTTCACCATTACTCCCTCTGTT 60.808 45.833 0.00 0.00 0.00 3.16
1468 2006 4.553330 TTCACCATTACTCCCTCTGTTC 57.447 45.455 0.00 0.00 0.00 3.18
1469 2007 2.838202 TCACCATTACTCCCTCTGTTCC 59.162 50.000 0.00 0.00 0.00 3.62
1470 2008 2.840651 CACCATTACTCCCTCTGTTCCT 59.159 50.000 0.00 0.00 0.00 3.36
1471 2009 4.030913 CACCATTACTCCCTCTGTTCCTA 58.969 47.826 0.00 0.00 0.00 2.94
1472 2010 4.469945 CACCATTACTCCCTCTGTTCCTAA 59.530 45.833 0.00 0.00 0.00 2.69
1473 2011 4.470304 ACCATTACTCCCTCTGTTCCTAAC 59.530 45.833 0.00 0.00 0.00 2.34
1474 2012 4.717280 CCATTACTCCCTCTGTTCCTAACT 59.283 45.833 0.00 0.00 0.00 2.24
1475 2013 5.897824 CCATTACTCCCTCTGTTCCTAACTA 59.102 44.000 0.00 0.00 0.00 2.24
1476 2014 6.555360 CCATTACTCCCTCTGTTCCTAACTAT 59.445 42.308 0.00 0.00 0.00 2.12
1477 2015 7.728981 CCATTACTCCCTCTGTTCCTAACTATA 59.271 40.741 0.00 0.00 0.00 1.31
1478 2016 9.144298 CATTACTCCCTCTGTTCCTAACTATAA 57.856 37.037 0.00 0.00 0.00 0.98
1479 2017 8.763984 TTACTCCCTCTGTTCCTAACTATAAG 57.236 38.462 0.00 0.00 0.00 1.73
1480 2018 6.743788 ACTCCCTCTGTTCCTAACTATAAGT 58.256 40.000 0.00 0.00 0.00 2.24
1481 2019 6.834969 ACTCCCTCTGTTCCTAACTATAAGTC 59.165 42.308 0.00 0.00 0.00 3.01
1482 2020 6.982899 TCCCTCTGTTCCTAACTATAAGTCT 58.017 40.000 0.00 0.00 0.00 3.24
1483 2021 7.420029 TCCCTCTGTTCCTAACTATAAGTCTT 58.580 38.462 0.00 0.00 0.00 3.01
1484 2022 7.899709 TCCCTCTGTTCCTAACTATAAGTCTTT 59.100 37.037 0.00 0.00 0.00 2.52
1485 2023 8.541234 CCCTCTGTTCCTAACTATAAGTCTTTT 58.459 37.037 0.00 0.00 0.00 2.27
1486 2024 9.945904 CCTCTGTTCCTAACTATAAGTCTTTTT 57.054 33.333 0.00 0.00 0.00 1.94
1557 2095 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
1558 2096 8.345724 AGAATGTAGATTCACTCATTTTGCTT 57.654 30.769 14.46 0.00 40.59 3.91
1559 2097 8.457261 AGAATGTAGATTCACTCATTTTGCTTC 58.543 33.333 14.46 0.00 40.59 3.86
1560 2098 6.169419 TGTAGATTCACTCATTTTGCTTCG 57.831 37.500 0.00 0.00 0.00 3.79
1561 2099 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
1562 2100 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
1563 2101 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
1564 2102 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
1565 2103 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
1566 2104 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
1567 2105 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
1568 2106 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
1569 2107 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
1570 2108 5.581085 ACTCATTTTGCTTCGTATGTAGTCC 59.419 40.000 0.00 0.00 0.00 3.85
1571 2109 5.483811 TCATTTTGCTTCGTATGTAGTCCA 58.516 37.500 0.00 0.00 0.00 4.02
1572 2110 6.112734 TCATTTTGCTTCGTATGTAGTCCAT 58.887 36.000 0.00 0.00 37.58 3.41
1573 2111 7.269316 TCATTTTGCTTCGTATGTAGTCCATA 58.731 34.615 0.00 0.00 34.86 2.74
1574 2112 7.438160 TCATTTTGCTTCGTATGTAGTCCATAG 59.562 37.037 0.00 0.00 36.71 2.23
1575 2113 5.847111 TTGCTTCGTATGTAGTCCATAGT 57.153 39.130 0.00 0.00 36.71 2.12
1576 2114 5.183014 TGCTTCGTATGTAGTCCATAGTG 57.817 43.478 0.00 0.00 36.71 2.74
1577 2115 4.037565 TGCTTCGTATGTAGTCCATAGTGG 59.962 45.833 0.00 0.00 36.71 4.00
1578 2116 4.277672 GCTTCGTATGTAGTCCATAGTGGA 59.722 45.833 0.00 0.00 45.98 4.02
1593 2131 8.380742 TCCATAGTGGAATCTCTAAAAAGACT 57.619 34.615 0.00 0.00 45.00 3.24
1666 5755 5.396484 TCGACAAGTGTAGTGTAAGTATGC 58.604 41.667 0.00 0.00 0.00 3.14
1688 5793 1.206610 TGTGCAAGCTCTTTGGCAAAA 59.793 42.857 14.43 4.61 37.26 2.44
1690 5828 0.863799 GCAAGCTCTTTGGCAAAAGC 59.136 50.000 25.87 25.87 42.23 3.51
1711 5849 7.739498 AAGCGTTTTGTCTAAAAGATCCTTA 57.261 32.000 0.00 0.00 36.51 2.69
1765 5903 9.854668 TTTCTAGAGTGATGCTACTATCTACTT 57.145 33.333 0.00 0.00 0.00 2.24
1766 5904 8.840833 TCTAGAGTGATGCTACTATCTACTTG 57.159 38.462 0.00 0.00 0.00 3.16
1771 5909 4.649218 TGATGCTACTATCTACTTGCACCA 59.351 41.667 0.00 0.00 33.16 4.17
1777 5915 6.984474 GCTACTATCTACTTGCACCATTACAA 59.016 38.462 0.00 0.00 0.00 2.41
1927 6215 3.196939 TGGTGTTGTAGGTGTTGGTAC 57.803 47.619 0.00 0.00 0.00 3.34
1930 6218 4.201657 GGTGTTGTAGGTGTTGGTACTTT 58.798 43.478 0.00 0.00 0.00 2.66
1932 6220 5.125900 GGTGTTGTAGGTGTTGGTACTTTTT 59.874 40.000 0.00 0.00 0.00 1.94
2185 6479 3.506810 GATCTCGACAACTCTTCCACAG 58.493 50.000 0.00 0.00 0.00 3.66
2239 6533 0.033504 TGTGGAGCTTTCGTGAGGTC 59.966 55.000 10.19 10.19 42.07 3.85
2242 6536 0.456995 GGAGCTTTCGTGAGGTCTCG 60.457 60.000 15.63 0.00 42.35 4.04
2247 6543 1.267261 CTTTCGTGAGGTCTCGTCTGT 59.733 52.381 1.78 0.00 34.81 3.41
2377 6679 1.467734 CTCTTGCAGGCACAATCTCAC 59.532 52.381 0.00 0.00 0.00 3.51
2429 6731 4.184629 GTCCATCACTGAGGTACACATTC 58.815 47.826 0.00 0.00 0.00 2.67
2452 6754 6.414732 TCATCACTCCCCAAAACTAATGTAG 58.585 40.000 0.00 0.00 0.00 2.74
2455 6757 6.704310 TCACTCCCCAAAACTAATGTAGTAC 58.296 40.000 0.00 0.00 38.26 2.73
2460 6762 8.439964 TCCCCAAAACTAATGTAGTACTACTT 57.560 34.615 28.56 21.53 38.26 2.24
2461 6763 9.545928 TCCCCAAAACTAATGTAGTACTACTTA 57.454 33.333 28.56 21.84 38.26 2.24
2589 6910 7.695480 ATGTTACATACACTTATTGGTTGCA 57.305 32.000 0.00 0.00 40.19 4.08
2618 6939 9.557061 CAGATCATCAGATATTCTTTCTTTGGA 57.443 33.333 0.00 0.00 33.72 3.53
2738 7117 9.713740 CTTCTAAGCAAATCTAGTGCATTTTAG 57.286 33.333 6.59 6.00 44.74 1.85
2742 7121 6.624423 AGCAAATCTAGTGCATTTTAGGTTG 58.376 36.000 6.59 3.41 44.74 3.77
2879 7261 5.057149 CCATTCCTTCTATGAAGGTAACCG 58.943 45.833 21.35 11.49 38.55 4.44
2884 7267 5.070047 TCCTTCTATGAAGGTAACCGGATTC 59.930 44.000 21.35 4.83 38.55 2.52
2916 7299 6.690194 ATATGGAAAGAGCTCAATGTTGTC 57.310 37.500 17.77 0.00 0.00 3.18
3087 7473 5.692115 TCCAGGTACAATGCTTCATCTTA 57.308 39.130 0.00 0.00 0.00 2.10
3115 7501 5.240623 ACATTGTAGTCCTTCATTTCGCAAA 59.759 36.000 0.00 0.00 0.00 3.68
3116 7502 5.759506 TTGTAGTCCTTCATTTCGCAAAA 57.240 34.783 0.00 0.00 0.00 2.44
3117 7503 5.957842 TGTAGTCCTTCATTTCGCAAAAT 57.042 34.783 0.00 0.00 35.43 1.82
3143 7530 8.017373 TCGAAGTGATATTTTTCTTTGAGCAAG 58.983 33.333 0.00 0.00 0.00 4.01
3230 7623 1.406539 CATGGGGAGCATGCTTAACAC 59.593 52.381 23.61 16.67 0.00 3.32
3231 7624 0.698238 TGGGGAGCATGCTTAACACT 59.302 50.000 23.61 0.00 0.00 3.55
3232 7625 1.098050 GGGGAGCATGCTTAACACTG 58.902 55.000 23.61 0.00 0.00 3.66
3238 7632 1.549203 CATGCTTAACACTGCCCCTT 58.451 50.000 0.00 0.00 0.00 3.95
3250 7644 2.916934 ACTGCCCCTTTCATACACCTAA 59.083 45.455 0.00 0.00 0.00 2.69
3281 7675 1.788258 CGGGCATATGCTACACTCTG 58.212 55.000 26.12 10.34 41.70 3.35
3282 7676 1.341209 CGGGCATATGCTACACTCTGA 59.659 52.381 26.12 0.00 41.70 3.27
3337 7732 0.181350 GTCCTCTAAGGCCATGTGGG 59.819 60.000 5.01 1.06 34.61 4.61
3360 7755 4.202367 GCCACTATGATGTAGGTTAGCCTT 60.202 45.833 2.41 0.00 44.18 4.35
3423 7818 0.038526 ACGTGACGTAAGGAAGCCAG 60.039 55.000 9.69 0.00 46.39 4.85
3433 7828 0.398318 AGGAAGCCAGTCAGTTCACC 59.602 55.000 0.00 0.00 0.00 4.02
3435 7830 1.623811 GGAAGCCAGTCAGTTCACCTA 59.376 52.381 0.00 0.00 0.00 3.08
3441 7836 3.557054 GCCAGTCAGTTCACCTATGTTCA 60.557 47.826 0.00 0.00 0.00 3.18
3498 7904 4.225267 AGTCGAGGTGGAAATTACCAGATT 59.775 41.667 0.00 0.00 40.85 2.40
3554 7965 4.411869 TGTTGACCAAGAGCCATATATCCA 59.588 41.667 0.00 0.00 0.00 3.41
3593 8091 3.686016 ACAAAGGTGGATAACAATCGCT 58.314 40.909 0.00 0.00 0.00 4.93
3628 8126 4.436451 GCGAAATTGGTAAAGAGGGTTACG 60.436 45.833 0.00 0.00 35.23 3.18
3649 8147 1.358759 CCTGCGTTTGACCACCAAC 59.641 57.895 0.00 0.00 33.85 3.77
3656 8154 3.199677 CGTTTGACCACCAACTTGTCTA 58.800 45.455 0.00 0.00 33.85 2.59
3657 8155 3.813166 CGTTTGACCACCAACTTGTCTAT 59.187 43.478 0.00 0.00 33.85 1.98
3660 8158 3.738982 TGACCACCAACTTGTCTATGTG 58.261 45.455 0.00 0.00 0.00 3.21
3663 8161 1.812571 CACCAACTTGTCTATGTGGGC 59.187 52.381 0.00 0.00 29.97 5.36
3670 8168 4.517285 ACTTGTCTATGTGGGCAATGTAG 58.483 43.478 0.00 0.00 0.00 2.74
3685 8183 6.459710 GGGCAATGTAGTATTAGCCAAGAAAC 60.460 42.308 0.00 0.00 43.72 2.78
3724 8222 1.681166 CCAAGAGCCATGTCTCCTTGG 60.681 57.143 15.65 15.65 38.59 3.61
3728 8226 2.026449 AGAGCCATGTCTCCTTGGAAAG 60.026 50.000 0.00 0.00 45.69 2.62
3772 8270 4.401022 ACATTCAATGAGGTCTCAAAGCA 58.599 39.130 3.79 0.00 43.58 3.91
3776 8274 3.254166 TCAATGAGGTCTCAAAGCAAAGC 59.746 43.478 4.67 0.00 43.58 3.51
3784 8282 4.202111 GGTCTCAAAGCAAAGCTGGTAAAA 60.202 41.667 0.00 0.00 39.62 1.52
3793 8291 4.503123 GCAAAGCTGGTAAAAAGGGTCATT 60.503 41.667 0.00 0.00 0.00 2.57
3796 8294 3.826729 AGCTGGTAAAAAGGGTCATTGAC 59.173 43.478 8.34 8.34 0.00 3.18
3812 8310 5.179555 GTCATTGACCTAGTCTTTGACCAAC 59.820 44.000 5.44 0.00 38.22 3.77
3815 8313 4.448210 TGACCTAGTCTTTGACCAACAAC 58.552 43.478 0.00 0.00 38.29 3.32
3824 8322 2.418368 TGACCAACAACTTGTCAGCT 57.582 45.000 0.00 0.00 0.00 4.24
3825 8323 2.288666 TGACCAACAACTTGTCAGCTC 58.711 47.619 0.00 0.00 0.00 4.09
3826 8324 1.604278 GACCAACAACTTGTCAGCTCC 59.396 52.381 0.00 0.00 0.00 4.70
3875 8373 4.775295 GCAAAGTGCAATTGGGCA 57.225 50.000 16.06 0.00 44.26 5.36
3905 8405 2.499289 GCCTTCCAGATCTTCTCAGTCA 59.501 50.000 0.00 0.00 0.00 3.41
3911 8411 6.617782 TCCAGATCTTCTCAGTCAAGAATT 57.382 37.500 0.00 0.00 34.85 2.17
3957 8457 0.459063 GGTGGTGTACCCGATTCGAC 60.459 60.000 7.83 0.00 44.15 4.20
3968 8469 1.197910 CGATTCGACGTTTAGAGGGC 58.802 55.000 0.00 0.00 0.00 5.19
3988 8489 3.244078 GGCGAATCTCACATACATACCCA 60.244 47.826 0.00 0.00 0.00 4.51
4053 8562 5.968528 AAGTAGAGAGAATACCGCCTATG 57.031 43.478 0.00 0.00 0.00 2.23
4092 8602 8.030106 AGTGTTAAATTTGTTTCCGTCAAAAGA 58.970 29.630 0.00 0.00 38.11 2.52
4149 8659 2.338620 GCGTTTGCAGGGTTTCCC 59.661 61.111 0.00 0.00 45.90 3.97
4199 8709 2.548067 GGAAGAAGGTCTTGTCAGCGAA 60.548 50.000 0.00 0.00 36.73 4.70
4200 8710 2.447244 AGAAGGTCTTGTCAGCGAAG 57.553 50.000 0.00 0.00 0.00 3.79
4262 8772 4.019501 AGCTGAGACAGAAGGAATGTGAAT 60.020 41.667 2.81 0.00 32.44 2.57
4276 8786 7.500141 AGGAATGTGAATGCCATAATAAAACC 58.500 34.615 0.00 0.00 0.00 3.27
4301 8811 7.542130 CCCTTTAGATTTAGTCATGTTTTGTGC 59.458 37.037 0.00 0.00 0.00 4.57
4330 8840 7.164122 TCATTGATCACTAGCTTCAAACTTCT 58.836 34.615 0.00 0.00 33.45 2.85
4344 8854 4.451096 TCAAACTTCTTTGCATCTCGTACC 59.549 41.667 0.00 0.00 37.31 3.34
4355 8865 3.609644 GCATCTCGTACCTGTAATCTCCG 60.610 52.174 0.00 0.00 0.00 4.63
4356 8866 2.569059 TCTCGTACCTGTAATCTCCGG 58.431 52.381 0.00 0.00 0.00 5.14
4374 8884 3.203263 TCCGGATGGGGTATTTTCAATCA 59.797 43.478 0.00 0.00 36.01 2.57
4394 8904 7.825270 TCAATCATTTTCAGCAATAAATGGCTT 59.175 29.630 13.80 8.04 40.46 4.35
4413 8923 4.050553 GCTTGCTGCAACAACTTCATAAA 58.949 39.130 11.69 0.00 42.31 1.40
4417 8927 7.551035 TTGCTGCAACAACTTCATAAAAATT 57.449 28.000 11.69 0.00 0.00 1.82
4467 9033 8.957466 AGTTTACCCTTTTTATCTCAATAGTGC 58.043 33.333 0.00 0.00 0.00 4.40
4468 9034 8.957466 GTTTACCCTTTTTATCTCAATAGTGCT 58.043 33.333 0.00 0.00 0.00 4.40
4469 9035 9.528489 TTTACCCTTTTTATCTCAATAGTGCTT 57.472 29.630 0.00 0.00 0.00 3.91
4489 9061 4.201822 GCTTAAACTGAAGGTAGAATGGCG 60.202 45.833 0.00 0.00 0.00 5.69
4525 9097 7.820872 CCAATTGCATCTCTCCAACTTTATTTT 59.179 33.333 0.00 0.00 0.00 1.82
4533 9105 7.433680 TCTCTCCAACTTTATTTTCCTTTTGC 58.566 34.615 0.00 0.00 0.00 3.68
4547 9119 4.264253 TCCTTTTGCAGATGGTATGACAG 58.736 43.478 8.77 0.00 0.00 3.51
4556 9128 5.645497 GCAGATGGTATGACAGTTCTTTCTT 59.355 40.000 0.00 0.00 0.00 2.52
4561 9133 7.252612 TGGTATGACAGTTCTTTCTTCCATA 57.747 36.000 0.00 0.00 0.00 2.74
4595 9167 9.606631 GCTGAAAAGGAGTATATATATTCCTGG 57.393 37.037 28.29 18.99 45.42 4.45
4616 9188 9.416284 TCCTGGTTTATTCAAGTTTACTTTTCT 57.584 29.630 0.00 0.00 33.11 2.52
4640 9212 7.443575 TCTCTATTGGTAGTACGTGTATCCTTC 59.556 40.741 0.00 0.00 0.00 3.46
4646 9218 5.536161 GGTAGTACGTGTATCCTTCCCATAA 59.464 44.000 0.00 0.00 0.00 1.90
4655 9227 6.207417 GTGTATCCTTCCCATAATGTCCATTG 59.793 42.308 2.80 0.00 32.50 2.82
4676 9248 3.982576 GTGAAACCCTAACAACCACAG 57.017 47.619 0.00 0.00 0.00 3.66
4680 9252 1.218844 ACCCTAACAACCACAGGTGT 58.781 50.000 0.00 0.00 35.34 4.16
4681 9253 1.133915 ACCCTAACAACCACAGGTGTG 60.134 52.381 2.93 2.93 45.23 3.82
4687 9259 1.064758 ACAACCACAGGTGTGACATGT 60.065 47.619 11.80 0.00 44.67 3.21
4702 9274 5.126222 TGTGACATGTTGTTGGCTAGAAAAA 59.874 36.000 0.00 0.00 0.00 1.94
4703 9275 6.183360 TGTGACATGTTGTTGGCTAGAAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
4705 9277 5.540911 ACATGTTGTTGGCTAGAAAAATGG 58.459 37.500 0.00 0.00 0.00 3.16
4706 9278 5.070313 ACATGTTGTTGGCTAGAAAAATGGT 59.930 36.000 0.00 0.00 0.00 3.55
4707 9279 5.195001 TGTTGTTGGCTAGAAAAATGGTC 57.805 39.130 0.00 0.00 0.00 4.02
4708 9280 4.038642 TGTTGTTGGCTAGAAAAATGGTCC 59.961 41.667 0.00 0.00 0.00 4.46
4752 9324 6.800072 TTTCCCTTTCACCTTTGTATGTTT 57.200 33.333 0.00 0.00 0.00 2.83
4756 9328 7.235079 TCCCTTTCACCTTTGTATGTTTGATA 58.765 34.615 0.00 0.00 0.00 2.15
4792 9364 6.183360 TGTTTGTTTGCACATTTCATCTACCT 60.183 34.615 0.00 0.00 31.06 3.08
4794 9366 4.168760 GTTTGCACATTTCATCTACCTGC 58.831 43.478 0.00 0.00 0.00 4.85
4807 9379 2.229062 TCTACCTGCTCGAACACTCAAG 59.771 50.000 0.00 0.00 0.00 3.02
4844 9416 1.330080 GCACGCAACGCAACTCAATC 61.330 55.000 0.00 0.00 0.00 2.67
4846 9418 0.235665 ACGCAACGCAACTCAATCTG 59.764 50.000 0.00 0.00 0.00 2.90
4856 9428 3.672511 GCAACTCAATCTGGCATGTCAAG 60.673 47.826 0.00 0.00 0.00 3.02
4868 9440 7.337938 TCTGGCATGTCAAGTCTATAAAATGA 58.662 34.615 0.00 0.00 0.00 2.57
4874 9446 6.177610 TGTCAAGTCTATAAAATGACACCCC 58.822 40.000 3.01 0.00 43.79 4.95
4875 9447 6.177610 GTCAAGTCTATAAAATGACACCCCA 58.822 40.000 0.00 0.00 40.02 4.96
4881 9453 1.669927 AAAATGACACCCCACCCCCA 61.670 55.000 0.00 0.00 0.00 4.96
4960 9534 3.380393 TCCGGAGAATCTTCCATAACCA 58.620 45.455 0.00 0.00 37.05 3.67
4976 9550 5.303589 CCATAACCAATTGCATCATCCTTCT 59.696 40.000 0.00 0.00 0.00 2.85
5000 9574 1.751924 GATGGTACGTCTCTTCCTGCT 59.248 52.381 0.00 0.00 0.00 4.24
5001 9575 2.502142 TGGTACGTCTCTTCCTGCTA 57.498 50.000 0.00 0.00 0.00 3.49
5002 9576 2.799017 TGGTACGTCTCTTCCTGCTAA 58.201 47.619 0.00 0.00 0.00 3.09
5004 9578 2.477525 GGTACGTCTCTTCCTGCTAACG 60.478 54.545 0.00 0.00 36.29 3.18
5005 9579 0.526662 ACGTCTCTTCCTGCTAACGG 59.473 55.000 0.00 0.00 34.63 4.44
5006 9580 0.802607 CGTCTCTTCCTGCTAACGGC 60.803 60.000 0.00 0.00 42.22 5.68
5037 9611 5.567138 CGCAGGAAAGATTTTATGAAGGT 57.433 39.130 0.00 0.00 0.00 3.50
5039 9613 5.123820 CGCAGGAAAGATTTTATGAAGGTCA 59.876 40.000 0.00 0.00 0.00 4.02
5044 9618 8.331740 AGGAAAGATTTTATGAAGGTCAGATGA 58.668 33.333 0.00 0.00 0.00 2.92
5059 9633 8.237811 AGGTCAGATGAAAGTGTTATTTTTGT 57.762 30.769 0.00 0.00 0.00 2.83
5063 9637 8.196771 TCAGATGAAAGTGTTATTTTTGTTGCT 58.803 29.630 0.00 0.00 0.00 3.91
5064 9638 8.819974 CAGATGAAAGTGTTATTTTTGTTGCTT 58.180 29.630 0.00 0.00 0.00 3.91
5068 9642 9.081997 TGAAAGTGTTATTTTTGTTGCTTACAG 57.918 29.630 0.00 0.00 38.19 2.74
5073 9647 8.661257 GTGTTATTTTTGTTGCTTACAGGTTTT 58.339 29.630 0.00 0.00 38.19 2.43
5096 9670 5.090652 TCTTCAGTTGTAACAATGCGTTC 57.909 39.130 0.00 0.00 39.14 3.95
5097 9671 4.572795 TCTTCAGTTGTAACAATGCGTTCA 59.427 37.500 0.00 0.00 39.14 3.18
5102 9676 3.006659 TGTAACAATGCGTTCAAAGCC 57.993 42.857 0.00 0.00 39.14 4.35
5104 9678 0.665835 AACAATGCGTTCAAAGCCGA 59.334 45.000 0.00 0.00 29.27 5.54
5108 9682 2.262572 ATGCGTTCAAAGCCGAAATC 57.737 45.000 0.00 0.00 0.00 2.17
5137 9733 2.036862 TGATGCTGAATAGATGAGCGCT 59.963 45.455 11.27 11.27 35.36 5.92
5145 9741 5.118286 TGAATAGATGAGCGCTGAAATTGA 58.882 37.500 18.48 0.00 0.00 2.57
5190 9786 6.715347 ACCAATTGCATCTTAGGATAAACC 57.285 37.500 0.00 0.00 39.35 3.27
5196 9792 6.147864 TGCATCTTAGGATAAACCAATTGC 57.852 37.500 0.00 0.00 42.04 3.56
5197 9793 5.655974 TGCATCTTAGGATAAACCAATTGCA 59.344 36.000 0.00 0.00 42.04 4.08
5198 9794 6.324512 TGCATCTTAGGATAAACCAATTGCAT 59.675 34.615 0.00 0.00 42.04 3.96
5199 9795 7.505248 TGCATCTTAGGATAAACCAATTGCATA 59.495 33.333 0.00 0.00 42.04 3.14
5200 9796 8.526147 GCATCTTAGGATAAACCAATTGCATAT 58.474 33.333 0.00 0.00 42.04 1.78
5201 9797 9.850628 CATCTTAGGATAAACCAATTGCATATG 57.149 33.333 0.00 0.00 42.04 1.78
5202 9798 8.995027 TCTTAGGATAAACCAATTGCATATGT 57.005 30.769 4.29 0.00 42.04 2.29
5203 9799 9.066892 TCTTAGGATAAACCAATTGCATATGTC 57.933 33.333 4.29 0.00 42.04 3.06
5204 9800 8.995027 TTAGGATAAACCAATTGCATATGTCT 57.005 30.769 4.29 1.94 42.04 3.41
5205 9801 7.516198 AGGATAAACCAATTGCATATGTCTC 57.484 36.000 4.29 0.00 42.04 3.36
5206 9802 6.491403 AGGATAAACCAATTGCATATGTCTCC 59.509 38.462 4.29 1.03 42.04 3.71
5207 9803 6.265196 GGATAAACCAATTGCATATGTCTCCA 59.735 38.462 4.29 0.00 38.79 3.86
5208 9804 5.999205 AAACCAATTGCATATGTCTCCAA 57.001 34.783 4.29 0.31 0.00 3.53
5209 9805 4.989279 ACCAATTGCATATGTCTCCAAC 57.011 40.909 4.29 0.00 0.00 3.77
5210 9806 4.603131 ACCAATTGCATATGTCTCCAACT 58.397 39.130 4.29 0.00 0.00 3.16
5211 9807 5.018809 ACCAATTGCATATGTCTCCAACTT 58.981 37.500 4.29 0.00 0.00 2.66
5212 9808 5.481473 ACCAATTGCATATGTCTCCAACTTT 59.519 36.000 4.29 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.805219 CCTGAAAACCTACCGAAAATTGG 58.195 43.478 0.00 0.00 0.00 3.16
48 49 6.793203 CGAAATTGTGATTTGAATTTTGCCTG 59.207 34.615 0.00 0.00 35.65 4.85
53 54 8.606040 ATGACCGAAATTGTGATTTGAATTTT 57.394 26.923 0.00 0.00 35.65 1.82
85 86 6.805713 ACTCTGTGATTTCGGTTTTCAATTT 58.194 32.000 0.00 0.00 0.00 1.82
127 128 0.965363 AAATCAGCCGGTGCCGAAAT 60.965 50.000 12.71 0.00 42.83 2.17
228 231 3.560636 ACTTGTGGCCTGGTATATGAC 57.439 47.619 3.32 0.00 0.00 3.06
267 270 2.064434 TTCATATTCATGCCCGCCAA 57.936 45.000 0.00 0.00 31.73 4.52
291 294 1.371467 TTCCTCCCCTCAAATCTGCA 58.629 50.000 0.00 0.00 0.00 4.41
308 311 2.917971 CGTGATGAAGACGACCTCTTTC 59.082 50.000 0.00 0.00 39.53 2.62
316 319 0.242825 GGTGGACGTGATGAAGACGA 59.757 55.000 0.00 0.00 39.21 4.20
331 334 4.329545 CGGGTGGTGGTCTGGTGG 62.330 72.222 0.00 0.00 0.00 4.61
334 337 4.263572 TTGCGGGTGGTGGTCTGG 62.264 66.667 0.00 0.00 0.00 3.86
335 338 2.958578 AAGTTGCGGGTGGTGGTCTG 62.959 60.000 0.00 0.00 0.00 3.51
336 339 1.412453 TAAGTTGCGGGTGGTGGTCT 61.412 55.000 0.00 0.00 0.00 3.85
337 340 0.953960 CTAAGTTGCGGGTGGTGGTC 60.954 60.000 0.00 0.00 0.00 4.02
338 341 1.072505 CTAAGTTGCGGGTGGTGGT 59.927 57.895 0.00 0.00 0.00 4.16
374 377 5.912360 TGTATGTATAGTCGATCGAACGT 57.088 39.130 21.31 17.34 34.70 3.99
399 402 9.626045 CTCGTTAGTCAATGATGCACTTATATA 57.374 33.333 0.00 0.00 0.00 0.86
400 403 7.116948 GCTCGTTAGTCAATGATGCACTTATAT 59.883 37.037 0.00 0.00 30.55 0.86
401 404 6.420903 GCTCGTTAGTCAATGATGCACTTATA 59.579 38.462 0.00 0.00 30.55 0.98
439 445 1.124780 TGGAACGTTCAGGGACTTCA 58.875 50.000 28.24 12.38 34.60 3.02
440 446 2.249844 TTGGAACGTTCAGGGACTTC 57.750 50.000 28.24 9.94 34.60 3.01
453 459 3.066621 TGATGCGGATTGCTAATTGGAAC 59.933 43.478 0.00 0.00 46.63 3.62
456 462 2.880268 TCTGATGCGGATTGCTAATTGG 59.120 45.455 0.00 0.00 46.63 3.16
470 476 2.038295 AGTATGGCTTAGGCTCTGATGC 59.962 50.000 7.43 0.00 38.73 3.91
473 479 3.032265 TGAGTATGGCTTAGGCTCTGA 57.968 47.619 7.43 0.00 38.73 3.27
508 514 1.026182 TGCTTCATCATCCACCGCAC 61.026 55.000 0.00 0.00 0.00 5.34
515 521 5.227908 CCTATTGCATTTGCTTCATCATCC 58.772 41.667 3.94 0.00 42.66 3.51
518 524 4.279982 TCCCTATTGCATTTGCTTCATCA 58.720 39.130 3.94 0.00 42.66 3.07
568 574 6.719370 ACTTTTGCATTTCCACCTATGTAAGA 59.281 34.615 0.00 0.00 30.07 2.10
643 649 2.480224 AAACAGCGCATGCATGTATC 57.520 45.000 26.79 15.84 46.23 2.24
646 652 1.733389 GCTAAAACAGCGCATGCATGT 60.733 47.619 26.79 18.34 46.23 3.21
657 663 8.765219 ACGCATATGTATTCTAAGCTAAAACAG 58.235 33.333 4.29 0.00 0.00 3.16
658 664 8.547894 CACGCATATGTATTCTAAGCTAAAACA 58.452 33.333 4.29 0.00 0.00 2.83
659 665 7.530861 GCACGCATATGTATTCTAAGCTAAAAC 59.469 37.037 4.29 0.00 0.00 2.43
661 667 6.704050 TGCACGCATATGTATTCTAAGCTAAA 59.296 34.615 4.29 0.00 0.00 1.85
664 670 4.631131 TGCACGCATATGTATTCTAAGCT 58.369 39.130 4.29 0.00 0.00 3.74
665 671 4.143030 CCTGCACGCATATGTATTCTAAGC 60.143 45.833 4.29 0.00 0.00 3.09
667 673 4.202315 ACCCTGCACGCATATGTATTCTAA 60.202 41.667 4.29 0.00 0.00 2.10
668 674 3.323691 ACCCTGCACGCATATGTATTCTA 59.676 43.478 4.29 0.00 0.00 2.10
694 1207 3.933879 TGTGATCCACATGCTTCGT 57.066 47.368 0.00 0.00 39.62 3.85
723 1236 1.068417 CCCGCCAATTCCATGCATG 59.932 57.895 20.19 20.19 0.00 4.06
725 1238 1.304796 TTCCCGCCAATTCCATGCA 60.305 52.632 0.00 0.00 0.00 3.96
726 1239 1.322538 ACTTCCCGCCAATTCCATGC 61.323 55.000 0.00 0.00 0.00 4.06
727 1240 0.740737 GACTTCCCGCCAATTCCATG 59.259 55.000 0.00 0.00 0.00 3.66
728 1241 0.748005 CGACTTCCCGCCAATTCCAT 60.748 55.000 0.00 0.00 0.00 3.41
729 1242 1.376683 CGACTTCCCGCCAATTCCA 60.377 57.895 0.00 0.00 0.00 3.53
730 1243 2.112815 CCGACTTCCCGCCAATTCC 61.113 63.158 0.00 0.00 0.00 3.01
731 1244 1.366854 GACCGACTTCCCGCCAATTC 61.367 60.000 0.00 0.00 0.00 2.17
732 1245 1.376812 GACCGACTTCCCGCCAATT 60.377 57.895 0.00 0.00 0.00 2.32
733 1246 2.267961 GACCGACTTCCCGCCAAT 59.732 61.111 0.00 0.00 0.00 3.16
823 1336 2.726066 GCTTCTCAACTTTGAATCGGCG 60.726 50.000 0.00 0.00 36.64 6.46
834 1347 4.397417 GGATATTTGCACTGCTTCTCAACT 59.603 41.667 1.98 0.00 0.00 3.16
875 1388 2.985282 TGCTTTCTGGCTTGCCGG 60.985 61.111 13.96 13.96 0.00 6.13
888 1401 7.727181 AGTCGGAAGTCAAATATATACTGCTT 58.273 34.615 0.00 0.00 0.00 3.91
915 1432 4.259570 CGAATCATACGCATCCGAATGATC 60.260 45.833 0.00 0.00 38.29 2.92
937 1454 3.479590 CGTCAGTTAATTGATTGCATGCG 59.520 43.478 14.09 0.00 0.00 4.73
949 1466 1.993370 GCTTGCTCGACGTCAGTTAAT 59.007 47.619 17.16 0.00 0.00 1.40
1026 1543 4.124943 AGGTAGAGCCGCCGGAGA 62.125 66.667 7.68 0.00 43.70 3.71
1062 1579 1.550976 ACTCACCATCCGAAGAAGACC 59.449 52.381 0.00 0.00 0.00 3.85
1091 1608 4.197498 GCATCCATGGCCGTGTGC 62.197 66.667 23.39 22.06 40.16 4.57
1094 1611 2.725641 CATGCATCCATGGCCGTG 59.274 61.111 18.73 18.73 44.07 4.94
1298 1822 5.127031 AGAAAGGAGTTAGCTGCTAAGAGAG 59.873 44.000 21.62 0.00 42.81 3.20
1299 1823 5.020132 AGAAAGGAGTTAGCTGCTAAGAGA 58.980 41.667 21.62 0.00 42.81 3.10
1300 1824 5.337578 AGAAAGGAGTTAGCTGCTAAGAG 57.662 43.478 21.62 0.00 42.81 2.85
1312 1836 9.525826 ACATGATAATCAAGAAAGAAAGGAGTT 57.474 29.630 0.00 0.00 0.00 3.01
1452 1990 5.941555 AGTTAGGAACAGAGGGAGTAATG 57.058 43.478 0.00 0.00 0.00 1.90
1453 1991 9.369672 CTTATAGTTAGGAACAGAGGGAGTAAT 57.630 37.037 0.00 0.00 0.00 1.89
1455 1993 7.880623 ACTTATAGTTAGGAACAGAGGGAGTA 58.119 38.462 0.00 0.00 0.00 2.59
1456 1994 6.743788 ACTTATAGTTAGGAACAGAGGGAGT 58.256 40.000 0.00 0.00 0.00 3.85
1457 1995 7.064229 AGACTTATAGTTAGGAACAGAGGGAG 58.936 42.308 0.00 0.00 0.00 4.30
1458 1996 6.982899 AGACTTATAGTTAGGAACAGAGGGA 58.017 40.000 0.00 0.00 0.00 4.20
1459 1997 7.663043 AAGACTTATAGTTAGGAACAGAGGG 57.337 40.000 0.00 0.00 0.00 4.30
1460 1998 9.945904 AAAAAGACTTATAGTTAGGAACAGAGG 57.054 33.333 0.00 0.00 0.00 3.69
1531 2069 9.453572 AGCAAAATGAGTGAATCTACATTCTTA 57.546 29.630 0.00 0.00 39.49 2.10
1532 2070 8.345724 AGCAAAATGAGTGAATCTACATTCTT 57.654 30.769 0.00 0.00 39.49 2.52
1533 2071 7.934855 AGCAAAATGAGTGAATCTACATTCT 57.065 32.000 0.00 0.00 39.49 2.40
1534 2072 7.427606 CGAAGCAAAATGAGTGAATCTACATTC 59.572 37.037 0.00 0.00 39.24 2.67
1535 2073 7.094634 ACGAAGCAAAATGAGTGAATCTACATT 60.095 33.333 0.00 0.00 34.99 2.71
1536 2074 6.372659 ACGAAGCAAAATGAGTGAATCTACAT 59.627 34.615 0.00 0.00 0.00 2.29
1537 2075 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
1538 2076 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
1539 2077 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
1540 2078 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
1541 2079 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
1542 2080 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
1543 2081 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
1544 2082 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
1545 2083 6.408858 ACTACATACGAAGCAAAATGAGTG 57.591 37.500 0.00 0.00 0.00 3.51
1546 2084 5.581085 GGACTACATACGAAGCAAAATGAGT 59.419 40.000 0.00 0.00 0.00 3.41
1547 2085 5.580691 TGGACTACATACGAAGCAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
1548 2086 5.483811 TGGACTACATACGAAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
1549 2087 5.794687 TGGACTACATACGAAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
1550 2088 7.224753 CACTATGGACTACATACGAAGCAAAAT 59.775 37.037 0.00 0.00 41.03 1.82
1551 2089 6.533723 CACTATGGACTACATACGAAGCAAAA 59.466 38.462 0.00 0.00 41.03 2.44
1552 2090 6.040247 CACTATGGACTACATACGAAGCAAA 58.960 40.000 0.00 0.00 41.03 3.68
1553 2091 5.451381 CCACTATGGACTACATACGAAGCAA 60.451 44.000 0.00 0.00 40.96 3.91
1554 2092 4.037565 CCACTATGGACTACATACGAAGCA 59.962 45.833 0.00 0.00 40.96 3.91
1555 2093 4.277672 TCCACTATGGACTACATACGAAGC 59.722 45.833 0.00 0.00 42.67 3.86
1568 2106 8.380742 AGTCTTTTTAGAGATTCCACTATGGA 57.619 34.615 0.00 0.00 46.61 3.41
1589 2127 9.453830 ACTCCCTCCATTTCTAAATATAAGTCT 57.546 33.333 0.00 0.00 0.00 3.24
1606 2144 9.837681 TGTTGAGAATATATAATACTCCCTCCA 57.162 33.333 0.00 0.00 0.00 3.86
1666 5755 1.370900 GCCAAAGAGCTTGCACACG 60.371 57.895 0.00 0.00 33.27 4.49
1688 5793 7.739498 TTAAGGATCTTTTAGACAAAACGCT 57.261 32.000 0.00 0.00 30.52 5.07
1760 5898 9.853555 TCAAATTATTTGTAATGGTGCAAGTAG 57.146 29.630 16.06 0.00 41.36 2.57
1765 5903 9.499479 AAACATCAAATTATTTGTAATGGTGCA 57.501 25.926 16.06 0.00 41.36 4.57
1812 5950 6.490040 TGTAGGCTTGCTGAAACTTAAAGATT 59.510 34.615 0.00 0.00 0.00 2.40
1936 6224 9.719355 AACTTTTAAAAATTTGACCAACTCAGT 57.281 25.926 1.66 0.00 0.00 3.41
2058 6348 5.333299 AGTTGCCACGAGTGTGTTATATA 57.667 39.130 2.36 0.00 44.92 0.86
2108 6402 3.625853 TCATCACAACAAACACCAAGGA 58.374 40.909 0.00 0.00 0.00 3.36
2185 6479 6.108687 TGTGATGTACAATCTTCCAGTGATC 58.891 40.000 0.00 0.00 36.06 2.92
2239 6533 0.962489 AGGGACAAGTGACAGACGAG 59.038 55.000 0.00 0.00 0.00 4.18
2242 6536 1.896465 AGCTAGGGACAAGTGACAGAC 59.104 52.381 0.00 0.00 0.00 3.51
2247 6543 2.615986 TGGTAGCTAGGGACAAGTGA 57.384 50.000 0.00 0.00 0.00 3.41
2429 6731 6.180472 ACTACATTAGTTTTGGGGAGTGATG 58.820 40.000 0.00 0.00 34.86 3.07
2514 6831 4.466370 TCCTAGTTCGGTTCAGATCAACAT 59.534 41.667 0.00 0.00 0.00 2.71
2563 6880 8.580720 TGCAACCAATAAGTGTATGTAACATTT 58.419 29.630 0.00 0.00 41.10 2.32
2575 6894 3.853831 TCTGCATGCAACCAATAAGTG 57.146 42.857 22.88 5.86 0.00 3.16
2589 6910 9.575868 AAAGAAAGAATATCTGATGATCTGCAT 57.424 29.630 0.00 0.00 40.77 3.96
2618 6939 4.262592 GCAAACCCAAATGTCTCCTTCATT 60.263 41.667 0.00 0.00 37.14 2.57
2738 7117 4.676546 GCAAGAGGCAAGAATATTCAACC 58.323 43.478 17.56 14.15 43.97 3.77
2852 7234 5.134725 ACCTTCATAGAAGGAATGGCAAT 57.865 39.130 27.49 4.48 39.81 3.56
2916 7299 2.809446 CATGACTGCATGCTCAAATGG 58.191 47.619 20.33 3.53 44.76 3.16
2950 7335 7.685481 TGTCTGAGGTAAACTCCAAATATCAA 58.315 34.615 0.00 0.00 46.01 2.57
3087 7473 5.520288 CGAAATGAAGGACTACAATGTCGAT 59.480 40.000 0.00 0.00 37.81 3.59
3115 7501 8.514594 TGCTCAAAGAAAAATATCACTTCGATT 58.485 29.630 0.00 0.00 35.39 3.34
3116 7502 8.044060 TGCTCAAAGAAAAATATCACTTCGAT 57.956 30.769 0.00 0.00 38.21 3.59
3117 7503 7.433708 TGCTCAAAGAAAAATATCACTTCGA 57.566 32.000 0.00 0.00 0.00 3.71
3143 7530 9.959749 TTAATGAAAATTCACCACTCTTGTTAC 57.040 29.630 0.00 0.00 40.49 2.50
3230 7623 3.644966 TTAGGTGTATGAAAGGGGCAG 57.355 47.619 0.00 0.00 0.00 4.85
3231 7624 5.192923 AGTTATTAGGTGTATGAAAGGGGCA 59.807 40.000 0.00 0.00 0.00 5.36
3232 7625 5.691896 AGTTATTAGGTGTATGAAAGGGGC 58.308 41.667 0.00 0.00 0.00 5.80
3238 7632 7.493320 CCGCAAAGTAGTTATTAGGTGTATGAA 59.507 37.037 0.00 0.00 0.00 2.57
3250 7644 3.502211 GCATATGCCCGCAAAGTAGTTAT 59.498 43.478 17.26 0.00 34.31 1.89
3337 7732 3.665190 GGCTAACCTACATCATAGTGGC 58.335 50.000 0.00 0.00 0.00 5.01
3360 7755 8.420222 TGAAATAGAAGAATTTTCACCAAGCAA 58.580 29.630 0.00 0.00 35.16 3.91
3423 7818 5.542779 AGAGTTGAACATAGGTGAACTGAC 58.457 41.667 9.28 0.00 33.12 3.51
3441 7836 4.081198 GGGATCTGAGTCAACATGAGAGTT 60.081 45.833 0.00 0.00 0.00 3.01
3491 7897 2.505819 ACCCGATAGCTCAAAATCTGGT 59.494 45.455 4.87 4.87 35.58 4.00
3498 7904 5.607939 TTATGAGAACCCGATAGCTCAAA 57.392 39.130 0.00 0.00 40.38 2.69
3554 7965 4.946160 TTGTAAGGATTGTCCCTTCCAT 57.054 40.909 0.00 0.00 44.88 3.41
3628 8126 2.617274 GGTGGTCAAACGCAGGCTC 61.617 63.158 0.00 0.00 0.00 4.70
3635 8133 2.014128 AGACAAGTTGGTGGTCAAACG 58.986 47.619 7.96 0.00 37.08 3.60
3649 8147 4.517285 ACTACATTGCCCACATAGACAAG 58.483 43.478 0.00 0.00 0.00 3.16
3656 8154 4.141274 TGGCTAATACTACATTGCCCACAT 60.141 41.667 0.00 0.00 39.60 3.21
3657 8155 3.201045 TGGCTAATACTACATTGCCCACA 59.799 43.478 0.00 0.00 39.60 4.17
3660 8158 4.714632 TCTTGGCTAATACTACATTGCCC 58.285 43.478 0.00 0.00 39.60 5.36
3663 8161 7.624360 TGGTTTCTTGGCTAATACTACATTG 57.376 36.000 0.00 0.00 0.00 2.82
3670 8168 8.276252 TGATACTTTGGTTTCTTGGCTAATAC 57.724 34.615 0.00 0.00 0.00 1.89
3685 8183 7.414540 GCTCTTGGTCAACTATTGATACTTTGG 60.415 40.741 0.00 0.00 42.47 3.28
3724 8222 3.181493 CCACCTCTATGCATTGTGCTTTC 60.181 47.826 3.54 0.00 45.31 2.62
3728 8226 2.042686 TCCACCTCTATGCATTGTGC 57.957 50.000 3.54 0.00 45.29 4.57
3740 8238 5.440610 ACCTCATTGAATGTTATCCACCTC 58.559 41.667 4.93 0.00 0.00 3.85
3772 8270 4.898861 TCAATGACCCTTTTTACCAGCTTT 59.101 37.500 0.00 0.00 0.00 3.51
3776 8274 4.783764 GGTCAATGACCCTTTTTACCAG 57.216 45.455 21.30 0.00 46.19 4.00
3793 8291 4.163458 AGTTGTTGGTCAAAGACTAGGTCA 59.837 41.667 0.00 0.00 37.81 4.02
3796 8294 4.881850 ACAAGTTGTTGGTCAAAGACTAGG 59.118 41.667 1.64 1.82 38.07 3.02
3809 8307 2.564771 TCTGGAGCTGACAAGTTGTTG 58.435 47.619 10.45 7.69 39.82 3.33
3812 8310 3.672808 AGATTCTGGAGCTGACAAGTTG 58.327 45.455 0.00 0.00 0.00 3.16
3815 8313 3.370366 CGAAAGATTCTGGAGCTGACAAG 59.630 47.826 0.00 0.00 0.00 3.16
3875 8373 0.625683 ATCTGGAAGGCTCATGGGGT 60.626 55.000 0.00 0.00 0.00 4.95
3919 8419 5.650266 ACCACCATTTCAGTTTATGCGATTA 59.350 36.000 0.00 0.00 0.00 1.75
3924 8424 4.519540 ACACCACCATTTCAGTTTATGC 57.480 40.909 0.00 0.00 0.00 3.14
3957 8457 2.194271 GTGAGATTCGCCCTCTAAACG 58.806 52.381 0.00 0.00 0.00 3.60
3968 8469 5.050091 GCTTTGGGTATGTATGTGAGATTCG 60.050 44.000 0.00 0.00 0.00 3.34
4015 8519 9.360901 TCTCTCTACTTTTCTATCTATGCACAT 57.639 33.333 0.00 0.00 0.00 3.21
4036 8540 5.234543 GTGAAAACATAGGCGGTATTCTCTC 59.765 44.000 0.00 0.00 0.00 3.20
4075 8585 4.011023 TCCACTCTTTTGACGGAAACAAA 58.989 39.130 0.00 0.00 35.81 2.83
4076 8586 3.611970 TCCACTCTTTTGACGGAAACAA 58.388 40.909 0.00 0.00 0.00 2.83
4082 8592 6.067263 TGTTAAATTCCACTCTTTTGACGG 57.933 37.500 0.00 0.00 0.00 4.79
4083 8593 7.414436 TCTTGTTAAATTCCACTCTTTTGACG 58.586 34.615 0.00 0.00 0.00 4.35
4115 8625 5.673818 GCAAACGCAACCCAATAAAACAAAA 60.674 36.000 0.00 0.00 0.00 2.44
4116 8626 4.201822 GCAAACGCAACCCAATAAAACAAA 60.202 37.500 0.00 0.00 0.00 2.83
4149 8659 4.510340 GCCACCATATAACGGAACAAGTAG 59.490 45.833 0.00 0.00 0.00 2.57
4241 8751 4.094590 GCATTCACATTCCTTCTGTCTCAG 59.905 45.833 0.00 0.00 0.00 3.35
4276 8786 7.542130 GGCACAAAACATGACTAAATCTAAAGG 59.458 37.037 0.00 0.00 0.00 3.11
4301 8811 6.688637 TTGAAGCTAGTGATCAATGAATGG 57.311 37.500 5.80 0.00 0.00 3.16
4330 8840 5.339008 AGATTACAGGTACGAGATGCAAA 57.661 39.130 0.00 0.00 0.00 3.68
4344 8854 1.424638 ACCCCATCCGGAGATTACAG 58.575 55.000 11.34 0.00 0.00 2.74
4355 8865 7.563906 TGAAAATGATTGAAAATACCCCATCC 58.436 34.615 0.00 0.00 0.00 3.51
4356 8866 7.225341 GCTGAAAATGATTGAAAATACCCCATC 59.775 37.037 0.00 0.00 0.00 3.51
4374 8884 5.806366 GCAAGCCATTTATTGCTGAAAAT 57.194 34.783 2.80 0.00 46.49 1.82
4394 8904 8.830201 ATAATTTTTATGAAGTTGTTGCAGCA 57.170 26.923 0.00 0.00 0.00 4.41
4442 8952 8.957466 AGCACTATTGAGATAAAAAGGGTAAAC 58.043 33.333 0.00 0.00 0.00 2.01
4459 9025 8.547967 TTCTACCTTCAGTTTAAGCACTATTG 57.452 34.615 0.00 0.00 0.00 1.90
4465 9031 4.700213 GCCATTCTACCTTCAGTTTAAGCA 59.300 41.667 0.00 0.00 0.00 3.91
4466 9032 4.201822 CGCCATTCTACCTTCAGTTTAAGC 60.202 45.833 0.00 0.00 0.00 3.09
4467 9033 4.935808 ACGCCATTCTACCTTCAGTTTAAG 59.064 41.667 0.00 0.00 0.00 1.85
4468 9034 4.901868 ACGCCATTCTACCTTCAGTTTAA 58.098 39.130 0.00 0.00 0.00 1.52
4469 9035 4.546829 ACGCCATTCTACCTTCAGTTTA 57.453 40.909 0.00 0.00 0.00 2.01
4489 9061 4.884164 AGAGATGCAATTGGTTTAGCCTAC 59.116 41.667 7.72 0.00 38.35 3.18
4525 9097 4.263462 ACTGTCATACCATCTGCAAAAGGA 60.263 41.667 5.10 0.00 0.00 3.36
4533 9105 6.314896 GGAAGAAAGAACTGTCATACCATCTG 59.685 42.308 0.00 0.00 0.00 2.90
4607 9179 8.796475 ACACGTACTACCAATAGAGAAAAGTAA 58.204 33.333 0.00 0.00 32.23 2.24
4616 9188 6.488006 GGAAGGATACACGTACTACCAATAGA 59.512 42.308 0.00 0.00 41.41 1.98
4620 9192 3.701040 GGGAAGGATACACGTACTACCAA 59.299 47.826 0.00 0.00 41.41 3.67
4626 9198 5.850614 ACATTATGGGAAGGATACACGTAC 58.149 41.667 0.00 0.00 41.41 3.67
4640 9212 4.141959 GGTTTCACCAATGGACATTATGGG 60.142 45.833 6.16 3.88 38.42 4.00
4646 9218 2.999185 AGGGTTTCACCAATGGACAT 57.001 45.000 6.16 0.00 41.02 3.06
4655 9227 2.621526 CTGTGGTTGTTAGGGTTTCACC 59.378 50.000 0.00 0.00 37.60 4.02
4676 9248 1.032014 AGCCAACAACATGTCACACC 58.968 50.000 0.00 0.00 0.00 4.16
4680 9252 5.843673 TTTTTCTAGCCAACAACATGTCA 57.156 34.783 0.00 0.00 0.00 3.58
4681 9253 5.634859 CCATTTTTCTAGCCAACAACATGTC 59.365 40.000 0.00 0.00 0.00 3.06
4683 9255 5.540911 ACCATTTTTCTAGCCAACAACATG 58.459 37.500 0.00 0.00 0.00 3.21
4684 9256 5.279456 GGACCATTTTTCTAGCCAACAACAT 60.279 40.000 0.00 0.00 0.00 2.71
4685 9257 4.038642 GGACCATTTTTCTAGCCAACAACA 59.961 41.667 0.00 0.00 0.00 3.33
4686 9258 4.280929 AGGACCATTTTTCTAGCCAACAAC 59.719 41.667 0.00 0.00 0.00 3.32
4687 9259 4.479158 AGGACCATTTTTCTAGCCAACAA 58.521 39.130 0.00 0.00 0.00 2.83
4702 9274 1.002857 CCAAGGGGAAAGAGGACCAT 58.997 55.000 0.00 0.00 35.59 3.55
4703 9275 0.402861 ACCAAGGGGAAAGAGGACCA 60.403 55.000 0.00 0.00 38.05 4.02
4705 9277 0.609406 GCACCAAGGGGAAAGAGGAC 60.609 60.000 0.00 0.00 38.05 3.85
4706 9278 1.065410 TGCACCAAGGGGAAAGAGGA 61.065 55.000 0.00 0.00 38.05 3.71
4707 9279 0.178964 TTGCACCAAGGGGAAAGAGG 60.179 55.000 0.00 0.00 38.05 3.69
4708 9280 0.961753 GTTGCACCAAGGGGAAAGAG 59.038 55.000 0.00 0.00 38.05 2.85
4752 9324 9.317936 TGCAAACAAACACATGTTATTTTATCA 57.682 25.926 0.00 1.15 42.49 2.15
4756 9328 7.369803 TGTGCAAACAAACACATGTTATTTT 57.630 28.000 0.00 0.00 42.49 1.82
4807 9379 2.032030 GTGCACACATGTTGAGGTACAC 60.032 50.000 13.17 0.00 0.00 2.90
4809 9381 1.194547 CGTGCACACATGTTGAGGTAC 59.805 52.381 18.64 0.00 0.00 3.34
4812 9384 1.081906 GCGTGCACACATGTTGAGG 60.082 57.895 18.64 0.00 35.09 3.86
4820 9392 3.804193 TTGCGTTGCGTGCACACA 61.804 55.556 18.64 11.14 43.10 3.72
4844 9416 7.066163 TGTCATTTTATAGACTTGACATGCCAG 59.934 37.037 2.03 0.00 41.11 4.85
4846 9418 7.189512 GTGTCATTTTATAGACTTGACATGCC 58.810 38.462 8.28 0.00 45.78 4.40
4856 9428 4.204799 GGGTGGGGTGTCATTTTATAGAC 58.795 47.826 0.00 0.00 35.37 2.59
4889 9461 0.228238 CTTCTCTATTCTTGCGCGCG 59.772 55.000 28.44 28.44 0.00 6.86
4928 9502 0.530744 TTCTCCGGATCAAGTGGTCG 59.469 55.000 3.57 0.00 0.00 4.79
4976 9550 3.889538 CAGGAAGAGACGTACCATCCATA 59.110 47.826 11.78 0.00 0.00 2.74
4987 9561 0.802607 GCCGTTAGCAGGAAGAGACG 60.803 60.000 0.00 0.00 42.97 4.18
5010 9584 0.244721 AAAATCTTTCCTGCGGCTGC 59.755 50.000 11.65 11.65 43.20 5.25
5011 9585 3.378112 TCATAAAATCTTTCCTGCGGCTG 59.622 43.478 0.00 0.00 0.00 4.85
5012 9586 3.620488 TCATAAAATCTTTCCTGCGGCT 58.380 40.909 0.00 0.00 0.00 5.52
5013 9587 4.354587 CTTCATAAAATCTTTCCTGCGGC 58.645 43.478 0.00 0.00 0.00 6.53
5014 9588 4.399303 ACCTTCATAAAATCTTTCCTGCGG 59.601 41.667 0.00 0.00 0.00 5.69
5015 9589 5.123820 TGACCTTCATAAAATCTTTCCTGCG 59.876 40.000 0.00 0.00 0.00 5.18
5016 9590 6.375455 TCTGACCTTCATAAAATCTTTCCTGC 59.625 38.462 0.00 0.00 0.00 4.85
5017 9591 7.928307 TCTGACCTTCATAAAATCTTTCCTG 57.072 36.000 0.00 0.00 0.00 3.86
5018 9592 8.331740 TCATCTGACCTTCATAAAATCTTTCCT 58.668 33.333 0.00 0.00 0.00 3.36
5023 9597 8.954350 CACTTTCATCTGACCTTCATAAAATCT 58.046 33.333 0.00 0.00 0.00 2.40
5031 9605 8.463930 AAAATAACACTTTCATCTGACCTTCA 57.536 30.769 0.00 0.00 0.00 3.02
5037 9611 8.196771 AGCAACAAAAATAACACTTTCATCTGA 58.803 29.630 0.00 0.00 0.00 3.27
5039 9613 8.947055 AAGCAACAAAAATAACACTTTCATCT 57.053 26.923 0.00 0.00 0.00 2.90
5044 9618 8.038351 ACCTGTAAGCAACAAAAATAACACTTT 58.962 29.630 0.00 0.00 37.74 2.66
5059 9633 6.071616 ACAACTGAAGAAAAACCTGTAAGCAA 60.072 34.615 0.00 0.00 0.00 3.91
5063 9637 8.338072 TGTTACAACTGAAGAAAAACCTGTAA 57.662 30.769 0.00 0.00 0.00 2.41
5064 9638 7.925043 TGTTACAACTGAAGAAAAACCTGTA 57.075 32.000 0.00 0.00 0.00 2.74
5065 9639 6.827586 TGTTACAACTGAAGAAAAACCTGT 57.172 33.333 0.00 0.00 0.00 4.00
5068 9642 6.291585 CGCATTGTTACAACTGAAGAAAAACC 60.292 38.462 0.00 0.00 0.00 3.27
5073 9647 5.065346 TGAACGCATTGTTACAACTGAAGAA 59.935 36.000 0.00 0.00 42.09 2.52
5096 9670 2.589798 ATGCATGGATTTCGGCTTTG 57.410 45.000 0.00 0.00 0.00 2.77
5097 9671 2.496871 TCAATGCATGGATTTCGGCTTT 59.503 40.909 10.07 0.00 0.00 3.51
5164 9760 8.691797 GGTTTATCCTAAGATGCAATTGGTTTA 58.308 33.333 7.72 0.00 33.67 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.