Multiple sequence alignment - TraesCS3B01G088900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G088900 chr3B 100.000 5883 0 0 1 5883 59023241 59029123 0.000000e+00 10864.0
1 TraesCS3B01G088900 chr3B 76.347 427 88 11 205 624 390893544 390893964 3.570000e-52 217.0
2 TraesCS3B01G088900 chr3B 95.789 95 2 2 2583 2677 607220377 607220469 1.020000e-32 152.0
3 TraesCS3B01G088900 chr3A 90.377 2442 151 31 2675 5059 46831249 46833663 0.000000e+00 3131.0
4 TraesCS3B01G088900 chr3A 89.653 1788 128 29 767 2519 46829433 46831198 0.000000e+00 2224.0
5 TraesCS3B01G088900 chr3A 88.319 565 42 12 868 1414 36858466 36857908 0.000000e+00 656.0
6 TraesCS3B01G088900 chr3A 88.830 188 17 2 5117 5303 46833662 46833846 1.650000e-55 228.0
7 TraesCS3B01G088900 chr3A 74.600 500 96 18 150 638 656130726 656131205 2.160000e-44 191.0
8 TraesCS3B01G088900 chr3D 88.229 1886 125 44 732 2540 36008020 36009885 0.000000e+00 2163.0
9 TraesCS3B01G088900 chr3D 94.096 1101 50 9 2675 3771 36009914 36011003 0.000000e+00 1659.0
10 TraesCS3B01G088900 chr3D 89.677 1114 67 24 3968 5042 36011251 36012355 0.000000e+00 1376.0
11 TraesCS3B01G088900 chr3D 77.220 518 101 10 5 513 28855504 28856013 2.680000e-73 287.0
12 TraesCS3B01G088900 chr3D 89.450 218 5 2 5087 5303 36012364 36012564 5.850000e-65 259.0
13 TraesCS3B01G088900 chr3D 95.146 103 3 2 3810 3910 36011152 36011254 1.700000e-35 161.0
14 TraesCS3B01G088900 chr4A 99.829 585 0 1 5300 5883 589841914 589841330 0.000000e+00 1074.0
15 TraesCS3B01G088900 chr4A 97.647 85 2 0 2592 2676 35625875 35625791 4.750000e-31 147.0
16 TraesCS3B01G088900 chr4B 99.828 583 1 0 5301 5883 351300482 351301064 0.000000e+00 1072.0
17 TraesCS3B01G088900 chr2D 100.000 580 0 0 5304 5883 617104996 617105575 0.000000e+00 1072.0
18 TraesCS3B01G088900 chr2B 99.484 581 3 0 5303 5883 172799703 172800283 0.000000e+00 1057.0
19 TraesCS3B01G088900 chr2B 94.898 98 3 2 2580 2676 232350982 232350886 1.020000e-32 152.0
20 TraesCS3B01G088900 chr2A 87.519 673 61 14 868 1522 303689235 303688568 0.000000e+00 756.0
21 TraesCS3B01G088900 chr2A 87.240 674 59 14 868 1522 575785027 575784362 0.000000e+00 743.0
22 TraesCS3B01G088900 chr2A 78.571 196 39 3 266 460 10396495 10396302 6.190000e-25 126.0
23 TraesCS3B01G088900 chrUn 87.389 674 59 14 868 1522 74791608 74792274 0.000000e+00 750.0
24 TraesCS3B01G088900 chr7A 87.481 663 59 12 876 1522 627184540 627185194 0.000000e+00 743.0
25 TraesCS3B01G088900 chr7A 86.057 667 68 13 876 1522 595556311 595556972 0.000000e+00 693.0
26 TraesCS3B01G088900 chr7A 75.676 592 118 25 5 580 693595135 693595716 7.510000e-69 272.0
27 TraesCS3B01G088900 chr7A 96.842 95 2 1 2586 2680 80994171 80994078 2.190000e-34 158.0
28 TraesCS3B01G088900 chr7B 86.709 474 46 8 868 1326 738951947 738952418 1.460000e-140 510.0
29 TraesCS3B01G088900 chr4D 78.462 650 117 16 5 638 310116225 310115583 2.550000e-108 403.0
30 TraesCS3B01G088900 chr1A 79.860 571 99 10 85 645 425711248 425710684 2.550000e-108 403.0
31 TraesCS3B01G088900 chr1A 96.739 92 3 0 2592 2683 478354563 478354472 2.840000e-33 154.0
32 TraesCS3B01G088900 chr1A 87.805 123 10 4 2579 2697 95061111 95061232 7.950000e-29 139.0
33 TraesCS3B01G088900 chr6A 90.459 283 26 1 5301 5583 183228538 183228819 7.200000e-99 372.0
34 TraesCS3B01G088900 chr6A 84.181 177 20 3 5680 5848 183268510 183268686 1.310000e-36 165.0
35 TraesCS3B01G088900 chr6A 95.000 40 2 0 5569 5608 183228849 183228888 4.920000e-06 63.9
36 TraesCS3B01G088900 chr7D 76.884 597 111 19 1 580 601996269 601996855 4.430000e-81 313.0
37 TraesCS3B01G088900 chr5D 94.949 99 2 2 2592 2687 10524922 10524824 1.020000e-32 152.0
38 TraesCS3B01G088900 chr5D 92.308 104 6 2 2573 2676 488794491 488794390 4.750000e-31 147.0
39 TraesCS3B01G088900 chr5A 94.000 100 6 0 2587 2686 25892365 25892266 1.020000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G088900 chr3B 59023241 59029123 5882 False 10864.0 10864 100.0000 1 5883 1 chr3B.!!$F1 5882
1 TraesCS3B01G088900 chr3A 46829433 46833846 4413 False 1861.0 3131 89.6200 767 5303 3 chr3A.!!$F2 4536
2 TraesCS3B01G088900 chr3A 36857908 36858466 558 True 656.0 656 88.3190 868 1414 1 chr3A.!!$R1 546
3 TraesCS3B01G088900 chr3D 36008020 36012564 4544 False 1123.6 2163 91.3196 732 5303 5 chr3D.!!$F2 4571
4 TraesCS3B01G088900 chr3D 28855504 28856013 509 False 287.0 287 77.2200 5 513 1 chr3D.!!$F1 508
5 TraesCS3B01G088900 chr4A 589841330 589841914 584 True 1074.0 1074 99.8290 5300 5883 1 chr4A.!!$R2 583
6 TraesCS3B01G088900 chr4B 351300482 351301064 582 False 1072.0 1072 99.8280 5301 5883 1 chr4B.!!$F1 582
7 TraesCS3B01G088900 chr2D 617104996 617105575 579 False 1072.0 1072 100.0000 5304 5883 1 chr2D.!!$F1 579
8 TraesCS3B01G088900 chr2B 172799703 172800283 580 False 1057.0 1057 99.4840 5303 5883 1 chr2B.!!$F1 580
9 TraesCS3B01G088900 chr2A 303688568 303689235 667 True 756.0 756 87.5190 868 1522 1 chr2A.!!$R2 654
10 TraesCS3B01G088900 chr2A 575784362 575785027 665 True 743.0 743 87.2400 868 1522 1 chr2A.!!$R3 654
11 TraesCS3B01G088900 chrUn 74791608 74792274 666 False 750.0 750 87.3890 868 1522 1 chrUn.!!$F1 654
12 TraesCS3B01G088900 chr7A 627184540 627185194 654 False 743.0 743 87.4810 876 1522 1 chr7A.!!$F2 646
13 TraesCS3B01G088900 chr7A 595556311 595556972 661 False 693.0 693 86.0570 876 1522 1 chr7A.!!$F1 646
14 TraesCS3B01G088900 chr7A 693595135 693595716 581 False 272.0 272 75.6760 5 580 1 chr7A.!!$F3 575
15 TraesCS3B01G088900 chr4D 310115583 310116225 642 True 403.0 403 78.4620 5 638 1 chr4D.!!$R1 633
16 TraesCS3B01G088900 chr1A 425710684 425711248 564 True 403.0 403 79.8600 85 645 1 chr1A.!!$R1 560
17 TraesCS3B01G088900 chr7D 601996269 601996855 586 False 313.0 313 76.8840 1 580 1 chr7D.!!$F1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 25 0.107508 CACATGTGGGAGGCTGGTAG 60.108 60.000 18.51 0.00 0.00 3.18 F
198 212 0.108233 GGTGGCGGTTAACGTGGATA 60.108 55.000 0.00 0.00 46.52 2.59 F
1320 1370 0.108329 ATCTCGCGTGGGTTTACTGG 60.108 55.000 5.77 0.00 0.00 4.00 F
1382 1446 0.314618 AATTGTCAAGCATGCGCACA 59.685 45.000 14.90 13.25 42.27 4.57 F
1479 1559 0.605319 TGAACTTAAGCTGCCCCGTG 60.605 55.000 1.29 0.00 0.00 4.94 F
3006 3126 1.678101 GCAACCAGATGGAAGGTATGC 59.322 52.381 5.72 2.91 37.07 3.14 F
3784 4029 0.039527 GGCTTGGCACCGTAGTTTTG 60.040 55.000 0.00 0.00 0.00 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2093 0.390124 ACCATGCCACTTTGTTGCTG 59.610 50.000 0.00 0.0 0.00 4.41 R
2062 2169 1.209019 CTAGACAGCTCCCAACTGCAT 59.791 52.381 0.00 0.0 38.79 3.96 R
2977 3097 1.815003 CCATCTGGTTGCTGGAGTTTC 59.185 52.381 0.00 0.0 33.99 2.78 R
3006 3126 2.420022 CCATGGAGACCAAAGCTAAACG 59.580 50.000 5.56 0.0 36.95 3.60 R
3256 3380 3.991773 CACATGGTGAATGAAAAGGCTTG 59.008 43.478 0.00 0.0 38.72 4.01 R
4295 4550 0.094730 GCGTCAGTAATGTTCACCGC 59.905 55.000 0.00 0.0 0.00 5.68 R
5191 5482 0.179166 ATCGCGCACGCAATTCAAAT 60.179 45.000 16.04 0.0 42.06 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 21 1.619654 TTTTCACATGTGGGAGGCTG 58.380 50.000 25.16 0.00 0.00 4.85
23 25 0.107508 CACATGTGGGAGGCTGGTAG 60.108 60.000 18.51 0.00 0.00 3.18
27 29 0.904865 TGTGGGAGGCTGGTAGTGAG 60.905 60.000 0.00 0.00 0.00 3.51
39 41 3.211045 TGGTAGTGAGGCAAGAAACAAC 58.789 45.455 0.00 0.00 0.00 3.32
41 43 2.038387 AGTGAGGCAAGAAACAACGT 57.962 45.000 0.00 0.00 0.00 3.99
43 45 3.537580 AGTGAGGCAAGAAACAACGTTA 58.462 40.909 0.00 0.00 0.00 3.18
47 49 6.261381 AGTGAGGCAAGAAACAACGTTATTAA 59.739 34.615 0.00 0.00 0.00 1.40
51 53 7.882179 AGGCAAGAAACAACGTTATTAAGATT 58.118 30.769 0.00 0.00 0.00 2.40
55 57 9.893305 CAAGAAACAACGTTATTAAGATTCCTT 57.107 29.630 0.00 0.00 36.43 3.36
59 61 9.503399 AAACAACGTTATTAAGATTCCTTCTCT 57.497 29.630 0.00 0.00 31.78 3.10
61 63 9.804758 ACAACGTTATTAAGATTCCTTCTCTAG 57.195 33.333 0.00 0.00 31.78 2.43
64 66 9.411189 ACGTTATTAAGATTCCTTCTCTAGAGT 57.589 33.333 19.21 0.00 31.78 3.24
78 81 3.207778 TCTAGAGTAGCCGAGAAAGCTC 58.792 50.000 0.00 0.00 41.83 4.09
81 84 1.746220 GAGTAGCCGAGAAAGCTCTGA 59.254 52.381 0.00 0.00 41.83 3.27
124 132 0.614812 AATTGGGACTGCAATTGCCC 59.385 50.000 26.94 20.16 41.18 5.36
127 135 1.593265 GGGACTGCAATTGCCCAAG 59.407 57.895 26.94 19.52 40.39 3.61
129 137 0.899717 GGACTGCAATTGCCCAAGGA 60.900 55.000 26.94 6.84 41.18 3.36
130 138 0.968405 GACTGCAATTGCCCAAGGAA 59.032 50.000 26.94 6.09 41.18 3.36
131 139 1.551883 GACTGCAATTGCCCAAGGAAT 59.448 47.619 26.94 2.99 41.18 3.01
132 140 1.276989 ACTGCAATTGCCCAAGGAATG 59.723 47.619 26.94 8.50 41.18 2.67
133 141 1.551430 CTGCAATTGCCCAAGGAATGA 59.449 47.619 26.94 3.83 41.18 2.57
134 142 1.275856 TGCAATTGCCCAAGGAATGAC 59.724 47.619 26.94 0.00 41.18 3.06
135 143 1.275856 GCAATTGCCCAAGGAATGACA 59.724 47.619 20.06 0.00 34.31 3.58
136 144 2.932187 GCAATTGCCCAAGGAATGACAC 60.932 50.000 20.06 0.00 34.31 3.67
137 145 2.299582 CAATTGCCCAAGGAATGACACA 59.700 45.455 0.00 0.00 0.00 3.72
138 146 2.079170 TTGCCCAAGGAATGACACAA 57.921 45.000 0.00 0.00 0.00 3.33
145 156 4.509616 CCAAGGAATGACACAACCGTATA 58.490 43.478 0.00 0.00 0.00 1.47
191 205 1.743995 AGATGCGGTGGCGGTTAAC 60.744 57.895 0.00 0.00 44.10 2.01
198 212 0.108233 GGTGGCGGTTAACGTGGATA 60.108 55.000 0.00 0.00 46.52 2.59
201 215 2.098614 TGGCGGTTAACGTGGATACTA 58.901 47.619 0.00 0.00 46.52 1.82
212 226 5.717078 ACGTGGATACTACACTCTTCAAA 57.283 39.130 0.00 0.00 36.71 2.69
216 230 6.571731 CGTGGATACTACACTCTTCAAAGGAA 60.572 42.308 0.00 0.00 36.71 3.36
228 242 6.325028 ACTCTTCAAAGGAATCTCGATGGATA 59.675 38.462 0.00 0.00 31.34 2.59
232 246 5.244851 TCAAAGGAATCTCGATGGATAGGAG 59.755 44.000 0.00 0.00 0.00 3.69
242 256 1.595311 TGGATAGGAGTTGGCATGGT 58.405 50.000 0.00 0.00 0.00 3.55
243 257 2.770447 TGGATAGGAGTTGGCATGGTA 58.230 47.619 0.00 0.00 0.00 3.25
254 268 5.957132 AGTTGGCATGGTATAATCAGGAAT 58.043 37.500 0.00 0.00 0.00 3.01
299 313 2.167219 CCGCGAGCACGTTGATGAT 61.167 57.895 8.23 0.00 41.98 2.45
306 320 3.000041 GAGCACGTTGATGATGTTACCA 59.000 45.455 0.00 0.00 0.00 3.25
307 321 3.609853 AGCACGTTGATGATGTTACCAT 58.390 40.909 0.00 0.00 0.00 3.55
308 322 3.374988 AGCACGTTGATGATGTTACCATG 59.625 43.478 0.00 0.00 0.00 3.66
309 323 3.373748 GCACGTTGATGATGTTACCATGA 59.626 43.478 0.00 0.00 0.00 3.07
310 324 4.035558 GCACGTTGATGATGTTACCATGAT 59.964 41.667 0.00 0.00 0.00 2.45
311 325 5.504392 CACGTTGATGATGTTACCATGATG 58.496 41.667 0.00 0.00 0.00 3.07
312 326 5.294060 CACGTTGATGATGTTACCATGATGA 59.706 40.000 0.00 0.00 0.00 2.92
315 329 6.688385 CGTTGATGATGTTACCATGATGAAAC 59.312 38.462 0.00 0.00 0.00 2.78
318 332 9.460019 TTGATGATGTTACCATGATGAAACTAA 57.540 29.630 0.00 0.45 0.00 2.24
320 334 7.302350 TGATGTTACCATGATGAAACTAACG 57.698 36.000 0.00 0.00 0.00 3.18
322 336 4.938832 TGTTACCATGATGAAACTAACGGG 59.061 41.667 0.00 0.00 0.00 5.28
330 344 1.689813 TGAAACTAACGGGAGCACTGA 59.310 47.619 0.00 0.00 0.00 3.41
331 345 2.301870 TGAAACTAACGGGAGCACTGAT 59.698 45.455 0.00 0.00 0.00 2.90
333 347 1.267121 ACTAACGGGAGCACTGATGT 58.733 50.000 0.00 0.00 0.00 3.06
336 350 2.851263 AACGGGAGCACTGATGTTAA 57.149 45.000 0.00 0.00 0.00 2.01
343 357 0.179189 GCACTGATGTTAAGGCGTGC 60.179 55.000 0.00 0.00 40.53 5.34
349 363 2.667199 GTTAAGGCGTGCCGGTGT 60.667 61.111 1.90 0.00 41.95 4.16
369 383 4.410400 CCCACCCGTCAGGAAGGC 62.410 72.222 0.00 0.00 41.02 4.35
372 386 1.376037 CACCCGTCAGGAAGGCTTC 60.376 63.158 18.98 18.98 41.02 3.86
381 395 1.074566 CAGGAAGGCTTCTCAAGGGTT 59.925 52.381 25.25 0.77 0.00 4.11
387 401 3.374764 AGGCTTCTCAAGGGTTGTTTTT 58.625 40.909 0.00 0.00 0.00 1.94
432 447 3.182182 CAGAGAATCAATGCTTCGACGA 58.818 45.455 0.00 0.00 37.82 4.20
434 449 3.801050 AGAGAATCAATGCTTCGACGATG 59.199 43.478 0.00 1.73 37.82 3.84
463 478 2.553028 CGCAGGTGGGGCTTATCATTAT 60.553 50.000 0.00 0.00 0.00 1.28
482 497 8.750515 TCATTATTGATATGAAGAAGTTGGCA 57.249 30.769 0.00 0.00 0.00 4.92
490 505 2.807967 TGAAGAAGTTGGCATCGTTCTG 59.192 45.455 7.13 0.00 29.64 3.02
503 518 2.087009 GTTCTGCTCGTCCGTTCGG 61.087 63.158 4.74 4.74 0.00 4.30
521 536 5.391433 CGTTCGGTTTAATCATGTAAATCGC 59.609 40.000 13.73 3.97 43.86 4.58
525 540 5.171337 CGGTTTAATCATGTAAATCGCTTGC 59.829 40.000 8.11 0.00 39.80 4.01
534 549 3.505680 TGTAAATCGCTTGCCAAATGTCT 59.494 39.130 0.00 0.00 0.00 3.41
627 649 5.622346 AACACTCCCTCTTGATTATCCTC 57.378 43.478 0.00 0.00 0.00 3.71
628 650 3.970640 ACACTCCCTCTTGATTATCCTCC 59.029 47.826 0.00 0.00 0.00 4.30
632 654 5.092968 CTCCCTCTTGATTATCCTCCATCT 58.907 45.833 0.00 0.00 0.00 2.90
647 669 7.961326 TCCTCCATCTATAAATCATGATCGA 57.039 36.000 9.06 0.00 0.00 3.59
648 670 7.776107 TCCTCCATCTATAAATCATGATCGAC 58.224 38.462 9.06 0.00 0.00 4.20
649 671 7.397192 TCCTCCATCTATAAATCATGATCGACA 59.603 37.037 9.06 0.00 0.00 4.35
650 672 7.490725 CCTCCATCTATAAATCATGATCGACAC 59.509 40.741 9.06 0.00 0.00 3.67
651 673 7.029563 TCCATCTATAAATCATGATCGACACG 58.970 38.462 9.06 0.00 0.00 4.49
652 674 7.029563 CCATCTATAAATCATGATCGACACGA 58.970 38.462 9.06 2.68 41.13 4.35
654 676 9.080915 CATCTATAAATCATGATCGACACGATT 57.919 33.333 9.06 0.00 47.00 3.34
655 677 8.452989 TCTATAAATCATGATCGACACGATTG 57.547 34.615 9.06 4.23 47.00 2.67
656 678 8.082242 TCTATAAATCATGATCGACACGATTGT 58.918 33.333 9.06 0.00 47.00 2.71
657 679 9.341899 CTATAAATCATGATCGACACGATTGTA 57.658 33.333 9.06 0.00 47.00 2.41
658 680 5.890110 AATCATGATCGACACGATTGTAC 57.110 39.130 9.06 0.00 47.00 2.90
659 681 4.632538 TCATGATCGACACGATTGTACT 57.367 40.909 8.01 0.00 47.00 2.73
660 682 4.351192 TCATGATCGACACGATTGTACTG 58.649 43.478 8.01 3.22 47.00 2.74
661 683 3.842732 TGATCGACACGATTGTACTGT 57.157 42.857 8.01 0.00 47.00 3.55
662 684 3.498082 TGATCGACACGATTGTACTGTG 58.502 45.455 8.01 0.71 47.00 3.66
663 685 3.057806 TGATCGACACGATTGTACTGTGT 60.058 43.478 8.01 11.62 47.00 3.72
664 686 4.154556 TGATCGACACGATTGTACTGTGTA 59.845 41.667 8.01 1.83 47.00 2.90
665 687 4.690184 TCGACACGATTGTACTGTGTAT 57.310 40.909 11.72 0.00 46.13 2.29
666 688 4.408694 TCGACACGATTGTACTGTGTATG 58.591 43.478 11.72 8.91 46.13 2.39
667 689 4.083164 TCGACACGATTGTACTGTGTATGT 60.083 41.667 11.72 2.46 46.13 2.29
668 690 4.619760 CGACACGATTGTACTGTGTATGTT 59.380 41.667 11.72 0.00 46.13 2.71
669 691 5.118050 CGACACGATTGTACTGTGTATGTTT 59.882 40.000 11.72 0.00 46.13 2.83
670 692 6.223138 ACACGATTGTACTGTGTATGTTTG 57.777 37.500 10.55 0.00 44.47 2.93
671 693 5.756347 ACACGATTGTACTGTGTATGTTTGT 59.244 36.000 10.55 0.00 44.47 2.83
672 694 6.070829 CACGATTGTACTGTGTATGTTTGTG 58.929 40.000 0.00 0.00 0.00 3.33
673 695 5.756347 ACGATTGTACTGTGTATGTTTGTGT 59.244 36.000 0.00 0.00 0.00 3.72
674 696 6.924612 ACGATTGTACTGTGTATGTTTGTGTA 59.075 34.615 0.00 0.00 0.00 2.90
675 697 7.601130 ACGATTGTACTGTGTATGTTTGTGTAT 59.399 33.333 0.00 0.00 0.00 2.29
676 698 7.897800 CGATTGTACTGTGTATGTTTGTGTATG 59.102 37.037 0.00 0.00 0.00 2.39
677 699 8.615878 ATTGTACTGTGTATGTTTGTGTATGT 57.384 30.769 0.00 0.00 0.00 2.29
678 700 7.414814 TGTACTGTGTATGTTTGTGTATGTG 57.585 36.000 0.00 0.00 0.00 3.21
679 701 7.210873 TGTACTGTGTATGTTTGTGTATGTGA 58.789 34.615 0.00 0.00 0.00 3.58
680 702 6.785488 ACTGTGTATGTTTGTGTATGTGAG 57.215 37.500 0.00 0.00 0.00 3.51
681 703 5.179368 ACTGTGTATGTTTGTGTATGTGAGC 59.821 40.000 0.00 0.00 0.00 4.26
682 704 5.304778 TGTGTATGTTTGTGTATGTGAGCT 58.695 37.500 0.00 0.00 0.00 4.09
683 705 6.459923 TGTGTATGTTTGTGTATGTGAGCTA 58.540 36.000 0.00 0.00 0.00 3.32
684 706 6.367695 TGTGTATGTTTGTGTATGTGAGCTAC 59.632 38.462 0.00 0.00 0.00 3.58
685 707 6.590292 GTGTATGTTTGTGTATGTGAGCTACT 59.410 38.462 0.00 0.00 0.00 2.57
686 708 7.117812 GTGTATGTTTGTGTATGTGAGCTACTT 59.882 37.037 0.00 0.00 0.00 2.24
687 709 7.659799 TGTATGTTTGTGTATGTGAGCTACTTT 59.340 33.333 0.00 0.00 0.00 2.66
688 710 6.299023 TGTTTGTGTATGTGAGCTACTTTG 57.701 37.500 0.00 0.00 0.00 2.77
689 711 6.052360 TGTTTGTGTATGTGAGCTACTTTGA 58.948 36.000 0.00 0.00 0.00 2.69
690 712 6.710295 TGTTTGTGTATGTGAGCTACTTTGAT 59.290 34.615 0.00 0.00 0.00 2.57
691 713 7.228507 TGTTTGTGTATGTGAGCTACTTTGATT 59.771 33.333 0.00 0.00 0.00 2.57
692 714 6.726258 TGTGTATGTGAGCTACTTTGATTG 57.274 37.500 0.00 0.00 0.00 2.67
693 715 6.463360 TGTGTATGTGAGCTACTTTGATTGA 58.537 36.000 0.00 0.00 0.00 2.57
694 716 7.105588 TGTGTATGTGAGCTACTTTGATTGAT 58.894 34.615 0.00 0.00 0.00 2.57
695 717 7.607607 TGTGTATGTGAGCTACTTTGATTGATT 59.392 33.333 0.00 0.00 0.00 2.57
696 718 7.907045 GTGTATGTGAGCTACTTTGATTGATTG 59.093 37.037 0.00 0.00 0.00 2.67
697 719 7.607607 TGTATGTGAGCTACTTTGATTGATTGT 59.392 33.333 0.00 0.00 0.00 2.71
698 720 9.098355 GTATGTGAGCTACTTTGATTGATTGTA 57.902 33.333 0.00 0.00 0.00 2.41
699 721 8.743085 ATGTGAGCTACTTTGATTGATTGTAT 57.257 30.769 0.00 0.00 0.00 2.29
700 722 8.565896 TGTGAGCTACTTTGATTGATTGTATT 57.434 30.769 0.00 0.00 0.00 1.89
701 723 8.453320 TGTGAGCTACTTTGATTGATTGTATTG 58.547 33.333 0.00 0.00 0.00 1.90
702 724 8.454106 GTGAGCTACTTTGATTGATTGTATTGT 58.546 33.333 0.00 0.00 0.00 2.71
703 725 8.453320 TGAGCTACTTTGATTGATTGTATTGTG 58.547 33.333 0.00 0.00 0.00 3.33
704 726 8.340618 AGCTACTTTGATTGATTGTATTGTGT 57.659 30.769 0.00 0.00 0.00 3.72
705 727 8.796475 AGCTACTTTGATTGATTGTATTGTGTT 58.204 29.630 0.00 0.00 0.00 3.32
734 756 7.740519 AAATTACAGCGTGATATTCTTTTGC 57.259 32.000 0.00 0.00 0.00 3.68
735 757 6.683974 ATTACAGCGTGATATTCTTTTGCT 57.316 33.333 0.00 0.00 0.00 3.91
736 758 7.786178 ATTACAGCGTGATATTCTTTTGCTA 57.214 32.000 0.00 0.00 0.00 3.49
737 759 7.603963 TTACAGCGTGATATTCTTTTGCTAA 57.396 32.000 0.00 0.00 0.00 3.09
738 760 6.494893 ACAGCGTGATATTCTTTTGCTAAA 57.505 33.333 0.00 0.00 0.00 1.85
739 761 6.908825 ACAGCGTGATATTCTTTTGCTAAAA 58.091 32.000 0.00 0.00 0.00 1.52
740 762 7.367285 ACAGCGTGATATTCTTTTGCTAAAAA 58.633 30.769 0.00 0.00 34.17 1.94
759 781 3.944055 AAAGAGAGTACTGCATCGTGT 57.056 42.857 0.00 0.00 0.00 4.49
778 800 3.127548 GTGTCCTATAGTTCGTCACGGAA 59.872 47.826 0.00 0.00 0.00 4.30
785 807 2.740452 AGTTCGTCACGGAAAAGAGAC 58.260 47.619 0.00 0.00 0.00 3.36
808 830 2.404215 CAAGGAATACGATACCCGCTG 58.596 52.381 0.00 0.00 43.32 5.18
870 892 1.318576 GAAACCTGACACAAGTGGGG 58.681 55.000 5.08 6.41 34.19 4.96
887 909 1.596477 GGCCGCCATCTCATCTCAC 60.596 63.158 3.91 0.00 0.00 3.51
889 911 1.825341 CCGCCATCTCATCTCACCA 59.175 57.895 0.00 0.00 0.00 4.17
926 948 2.202878 GCGCCAGGATTCGTGCTA 60.203 61.111 0.00 0.00 32.74 3.49
979 1003 2.304470 GGAGAGAGAGGCCTTCACTTTT 59.696 50.000 6.77 0.00 0.00 2.27
1216 1258 4.803426 CGCTCCCTCTGTCCACGC 62.803 72.222 0.00 0.00 0.00 5.34
1217 1259 4.803426 GCTCCCTCTGTCCACGCG 62.803 72.222 3.53 3.53 0.00 6.01
1277 1327 6.154192 AGTGATCTGTCATGTTCTAGATGTGT 59.846 38.462 0.00 0.00 36.60 3.72
1279 1329 5.330455 TCTGTCATGTTCTAGATGTGTCC 57.670 43.478 0.00 0.00 0.00 4.02
1292 1342 0.387929 TGTGTCCGTCCTCTGTTCAC 59.612 55.000 0.00 0.00 0.00 3.18
1293 1343 0.674534 GTGTCCGTCCTCTGTTCACT 59.325 55.000 0.00 0.00 0.00 3.41
1320 1370 0.108329 ATCTCGCGTGGGTTTACTGG 60.108 55.000 5.77 0.00 0.00 4.00
1342 1392 5.309543 TGGTTATACTAGGCCATTGTATGCT 59.690 40.000 19.11 3.75 32.91 3.79
1345 1396 7.094762 GGTTATACTAGGCCATTGTATGCTTTC 60.095 40.741 19.11 9.05 32.91 2.62
1381 1445 1.421382 AAATTGTCAAGCATGCGCAC 58.579 45.000 14.90 10.69 42.27 5.34
1382 1446 0.314618 AATTGTCAAGCATGCGCACA 59.685 45.000 14.90 13.25 42.27 4.57
1402 1466 5.869344 GCACACACACATCAGTAGATTTCTA 59.131 40.000 0.00 0.00 30.20 2.10
1403 1467 6.035435 GCACACACACATCAGTAGATTTCTAG 59.965 42.308 0.00 0.00 30.20 2.43
1414 1479 8.969260 TCAGTAGATTTCTAGGTACGATGTAA 57.031 34.615 0.00 0.00 0.00 2.41
1464 1544 1.852067 ATTGGTTGCGGCGACTGAAC 61.852 55.000 19.22 7.03 0.00 3.18
1476 1556 1.454201 GACTGAACTTAAGCTGCCCC 58.546 55.000 1.29 0.00 0.00 5.80
1479 1559 0.605319 TGAACTTAAGCTGCCCCGTG 60.605 55.000 1.29 0.00 0.00 4.94
1514 1594 7.445096 TGAATCGAATTGCAAGGATATGTACAT 59.555 33.333 13.93 13.93 0.00 2.29
1553 1642 9.753674 TTCAGGATTCAAAATAAGTTACTCCAT 57.246 29.630 0.00 0.00 0.00 3.41
1585 1678 2.906354 ACTAATCCACCATCGAACAGC 58.094 47.619 0.00 0.00 0.00 4.40
1587 1680 1.742761 AATCCACCATCGAACAGCAG 58.257 50.000 0.00 0.00 0.00 4.24
1672 1767 6.647212 TGTGCACGATTAGAAGTATGAAAG 57.353 37.500 13.13 0.00 0.00 2.62
1693 1788 8.998377 TGAAAGAAAAATGACTCGATGTATTCA 58.002 29.630 0.00 0.00 0.00 2.57
1713 1808 3.965347 TCATAGGGGTAGGTTTGAGTAGC 59.035 47.826 0.00 0.00 0.00 3.58
1725 1820 4.274865 GTTTGAGTAGCATTCATAAGCGC 58.725 43.478 0.00 0.00 35.48 5.92
1795 1890 2.226200 TCAACATCGTGGAATGCTTGTG 59.774 45.455 0.00 0.00 0.00 3.33
1909 2015 2.300152 CAGACCTGCCTGACAACTAGAA 59.700 50.000 0.00 0.00 36.29 2.10
1936 2042 7.771361 TGTCATTACTAAGTTCAACAAGGTTCA 59.229 33.333 0.00 0.00 0.00 3.18
1987 2093 2.728690 TGATGTTGATGCTGGTTTGC 57.271 45.000 0.00 0.00 0.00 3.68
2058 2165 5.070313 GCCCCATAAGATTTTGGCTGAATTA 59.930 40.000 0.00 0.00 35.99 1.40
2062 2169 8.423349 CCCATAAGATTTTGGCTGAATTATTCA 58.577 33.333 7.46 7.46 38.17 2.57
2090 2197 3.244582 TGGGAGCTGTCTAGTTGGTTAA 58.755 45.455 0.00 0.00 0.00 2.01
2099 2206 8.154856 AGCTGTCTAGTTGGTTAACAATTAAGA 58.845 33.333 8.10 1.86 41.95 2.10
2100 2207 8.947115 GCTGTCTAGTTGGTTAACAATTAAGAT 58.053 33.333 8.10 0.00 41.95 2.40
2136 2243 8.993960 CAATGTTGATTGCTTGTGTGAACACAA 61.994 37.037 23.57 23.57 45.58 3.33
2174 2281 7.067372 TCCAGGTTTATCAATCAGCATACTTTG 59.933 37.037 0.00 0.00 0.00 2.77
2188 2295 5.965922 GCATACTTTGCCTCTGGTAAATTT 58.034 37.500 0.00 0.00 46.15 1.82
2189 2296 5.807011 GCATACTTTGCCTCTGGTAAATTTG 59.193 40.000 0.00 1.71 46.15 2.32
2190 2297 4.257267 ACTTTGCCTCTGGTAAATTTGC 57.743 40.909 0.00 0.00 36.75 3.68
2191 2298 3.640967 ACTTTGCCTCTGGTAAATTTGCA 59.359 39.130 8.59 0.99 36.75 4.08
2192 2299 4.284234 ACTTTGCCTCTGGTAAATTTGCAT 59.716 37.500 8.59 0.00 36.75 3.96
2195 2302 5.991933 TGCCTCTGGTAAATTTGCATAAA 57.008 34.783 8.59 0.00 0.00 1.40
2196 2303 6.543430 TGCCTCTGGTAAATTTGCATAAAT 57.457 33.333 8.59 0.00 38.11 1.40
2197 2304 6.572519 TGCCTCTGGTAAATTTGCATAAATC 58.427 36.000 8.59 0.00 35.50 2.17
2198 2305 6.154192 TGCCTCTGGTAAATTTGCATAAATCA 59.846 34.615 8.59 0.00 35.50 2.57
2199 2306 6.698766 GCCTCTGGTAAATTTGCATAAATCAG 59.301 38.462 8.59 5.35 35.50 2.90
2242 2350 6.045072 TCTACATCTTCCGAGCCTTTAAAA 57.955 37.500 0.00 0.00 0.00 1.52
2248 2356 7.610305 ACATCTTCCGAGCCTTTAAAAGAATAA 59.390 33.333 0.00 0.00 0.00 1.40
2286 2395 5.573380 AGGAAAGATATCTGCCAGCAATA 57.427 39.130 20.93 0.00 0.00 1.90
2293 2402 8.752005 AAGATATCTGCCAGCAATAACTTTTA 57.248 30.769 5.86 0.00 0.00 1.52
2313 2422 9.952188 ACTTTTATGACTTGAAGTTCTTTTAGC 57.048 29.630 0.00 0.00 0.00 3.09
2356 2465 5.575157 TGCTAGGTGAATTGTTTATTGGGA 58.425 37.500 0.00 0.00 0.00 4.37
2363 2472 8.659527 AGGTGAATTGTTTATTGGGAGAATTTT 58.340 29.630 0.00 0.00 0.00 1.82
2398 2507 2.171870 ACCTTGACCGTTCAGGAAGAAA 59.828 45.455 5.66 0.00 45.00 2.52
2527 2637 4.993705 AGACAATGGTAAGGTTTCTCCA 57.006 40.909 0.00 0.00 39.02 3.86
2533 2643 7.238710 ACAATGGTAAGGTTTCTCCATTACTT 58.761 34.615 7.76 0.00 45.25 2.24
2534 2644 8.387813 ACAATGGTAAGGTTTCTCCATTACTTA 58.612 33.333 7.76 0.00 45.25 2.24
2535 2645 9.408648 CAATGGTAAGGTTTCTCCATTACTTAT 57.591 33.333 7.76 0.00 45.25 1.73
2536 2646 8.980481 ATGGTAAGGTTTCTCCATTACTTATG 57.020 34.615 0.00 0.00 37.38 1.90
2537 2647 7.924541 TGGTAAGGTTTCTCCATTACTTATGT 58.075 34.615 0.00 0.00 39.02 2.29
2538 2648 9.049050 TGGTAAGGTTTCTCCATTACTTATGTA 57.951 33.333 0.00 0.00 39.02 2.29
2539 2649 9.895138 GGTAAGGTTTCTCCATTACTTATGTAA 57.105 33.333 3.90 3.90 42.11 2.41
2543 2653 9.892130 AGGTTTCTCCATTACTTATGTAAGAAG 57.108 33.333 6.78 4.95 41.33 2.85
2544 2654 9.886132 GGTTTCTCCATTACTTATGTAAGAAGA 57.114 33.333 6.78 6.72 41.33 2.87
2556 2666 9.829507 ACTTATGTAAGAAGATTCTTCTGATGG 57.170 33.333 25.68 16.65 43.72 3.51
2596 2706 8.662781 TCTAGATGCAATATGTTTGTTACTCC 57.337 34.615 0.00 0.00 0.00 3.85
2597 2707 6.699575 AGATGCAATATGTTTGTTACTCCC 57.300 37.500 0.00 0.00 0.00 4.30
2598 2708 6.426587 AGATGCAATATGTTTGTTACTCCCT 58.573 36.000 0.00 0.00 0.00 4.20
2599 2709 6.543831 AGATGCAATATGTTTGTTACTCCCTC 59.456 38.462 0.00 0.00 0.00 4.30
2600 2710 4.947388 TGCAATATGTTTGTTACTCCCTCC 59.053 41.667 0.00 0.00 0.00 4.30
2601 2711 4.035208 GCAATATGTTTGTTACTCCCTCCG 59.965 45.833 0.00 0.00 0.00 4.63
2602 2712 5.183228 CAATATGTTTGTTACTCCCTCCGT 58.817 41.667 0.00 0.00 0.00 4.69
2603 2713 6.342906 CAATATGTTTGTTACTCCCTCCGTA 58.657 40.000 0.00 0.00 0.00 4.02
2604 2714 4.895668 ATGTTTGTTACTCCCTCCGTAA 57.104 40.909 0.00 0.00 0.00 3.18
2605 2715 4.686191 TGTTTGTTACTCCCTCCGTAAA 57.314 40.909 0.00 0.00 0.00 2.01
2606 2716 4.379652 TGTTTGTTACTCCCTCCGTAAAC 58.620 43.478 0.00 0.00 0.00 2.01
2607 2717 4.101430 TGTTTGTTACTCCCTCCGTAAACT 59.899 41.667 0.00 0.00 0.00 2.66
2608 2718 5.304101 TGTTTGTTACTCCCTCCGTAAACTA 59.696 40.000 0.00 0.00 0.00 2.24
2609 2719 6.183360 TGTTTGTTACTCCCTCCGTAAACTAA 60.183 38.462 0.00 0.00 0.00 2.24
2610 2720 6.610075 TTGTTACTCCCTCCGTAAACTAAT 57.390 37.500 0.00 0.00 0.00 1.73
2611 2721 7.716799 TTGTTACTCCCTCCGTAAACTAATA 57.283 36.000 0.00 0.00 0.00 0.98
2612 2722 7.902920 TGTTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
2613 2723 8.995027 TGTTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
2614 2724 9.420118 TGTTACTCCCTCCGTAAACTAATATAA 57.580 33.333 0.00 0.00 0.00 0.98
2615 2725 9.905171 GTTACTCCCTCCGTAAACTAATATAAG 57.095 37.037 0.00 0.00 0.00 1.73
2616 2726 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
2617 2727 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2618 2728 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2619 2729 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2620 2730 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2621 2731 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2622 2732 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2623 2733 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2624 2734 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2625 2735 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2671 2781 9.490379 AACGCTCTTATATTAATTTACAGAGGG 57.510 33.333 21.96 21.96 42.53 4.30
2672 2782 8.867097 ACGCTCTTATATTAATTTACAGAGGGA 58.133 33.333 25.54 1.67 40.49 4.20
2673 2783 9.360093 CGCTCTTATATTAATTTACAGAGGGAG 57.640 37.037 20.74 5.24 40.49 4.30
2739 2849 5.539048 TGTGGCTCTAGAACAACTAAGTTC 58.461 41.667 2.42 0.00 46.35 3.01
2941 3061 9.817809 TTGAAGATTGTAGGTTATGATGTACTC 57.182 33.333 0.00 0.00 0.00 2.59
2977 3097 5.317733 AGGTTCTTCTACTGTCGATGAAG 57.682 43.478 9.82 8.06 37.75 3.02
3006 3126 1.678101 GCAACCAGATGGAAGGTATGC 59.322 52.381 5.72 2.91 37.07 3.14
3111 3231 9.416794 CTACCTGCATTAACATTATCACTAGAG 57.583 37.037 0.00 0.00 0.00 2.43
3209 3333 2.158325 ACCCCATGGTTGATTCACAGTT 60.158 45.455 11.73 0.00 44.75 3.16
3256 3380 7.492020 TGTTTCAGGAACATATGCATTAATTGC 59.508 33.333 3.54 2.13 46.19 3.56
3335 3459 5.126222 TCTCATTGCAACAAACTTTACACCA 59.874 36.000 0.00 0.00 0.00 4.17
3403 3527 4.030216 TGCTGTACTGTTATGATCCTCCA 58.970 43.478 1.46 0.00 0.00 3.86
3448 3572 4.584325 TGCTTCTCTGCACATTTTACCTTT 59.416 37.500 0.00 0.00 38.12 3.11
3544 3668 9.897744 TTAGCTAACTTGACATTCATCTTTTTG 57.102 29.630 0.86 0.00 0.00 2.44
3773 4018 1.529010 CTGTCAGGTTGGCTTGGCA 60.529 57.895 0.00 0.00 35.05 4.92
3774 4019 1.799258 CTGTCAGGTTGGCTTGGCAC 61.799 60.000 0.00 0.00 32.78 5.01
3784 4029 0.039527 GGCTTGGCACCGTAGTTTTG 60.040 55.000 0.00 0.00 0.00 2.44
3799 4044 7.040201 ACCGTAGTTTTGAGTGATGTAAGAGTA 60.040 37.037 0.00 0.00 0.00 2.59
3804 4049 9.429359 AGTTTTGAGTGATGTAAGAGTATTCTG 57.571 33.333 0.00 0.00 32.79 3.02
3805 4050 7.834068 TTTGAGTGATGTAAGAGTATTCTGC 57.166 36.000 0.00 0.00 32.79 4.26
3806 4051 6.530019 TGAGTGATGTAAGAGTATTCTGCA 57.470 37.500 0.00 0.00 32.79 4.41
3807 4052 6.567959 TGAGTGATGTAAGAGTATTCTGCAG 58.432 40.000 7.63 7.63 32.79 4.41
3808 4053 6.153510 TGAGTGATGTAAGAGTATTCTGCAGT 59.846 38.462 14.67 0.00 32.79 4.40
3837 4082 4.261909 CCATGCTATTTGCCTTTCCTGATC 60.262 45.833 0.00 0.00 42.00 2.92
4185 4437 6.327934 CCTTCAGGTCAAATTCTGCTTAATG 58.672 40.000 0.00 0.00 0.00 1.90
4205 4457 4.137116 TGGTGTATCTGCAGTTATCCAC 57.863 45.455 14.67 13.86 0.00 4.02
4210 4462 6.992715 GGTGTATCTGCAGTTATCCACTAAAT 59.007 38.462 14.67 0.00 32.76 1.40
4211 4463 7.171678 GGTGTATCTGCAGTTATCCACTAAATC 59.828 40.741 14.67 0.00 32.76 2.17
4213 4465 7.928167 TGTATCTGCAGTTATCCACTAAATCTG 59.072 37.037 14.67 0.00 32.76 2.90
4214 4466 5.118990 TCTGCAGTTATCCACTAAATCTGC 58.881 41.667 14.67 0.00 44.39 4.26
4255 4510 8.743085 AAATGCACAATAGTCTACATGAGAAT 57.257 30.769 0.00 0.00 35.37 2.40
4258 4513 8.877808 TGCACAATAGTCTACATGAGAATTAG 57.122 34.615 0.00 0.00 35.37 1.73
4268 4523 9.462174 GTCTACATGAGAATTAGATCTGAACTG 57.538 37.037 5.18 0.00 35.37 3.16
4281 4536 6.385033 AGATCTGAACTGTTAGCAAAAATGC 58.615 36.000 0.00 0.00 0.00 3.56
4295 4550 9.801873 TTAGCAAAAATGCCTTTATTAGCTTAG 57.198 29.630 0.00 0.00 34.90 2.18
4321 4577 2.900122 ACATTACTGACGCATTGCAC 57.100 45.000 9.69 2.79 0.00 4.57
4324 4580 4.191544 ACATTACTGACGCATTGCACTAT 58.808 39.130 9.69 0.00 0.00 2.12
4325 4581 4.635765 ACATTACTGACGCATTGCACTATT 59.364 37.500 9.69 0.00 0.00 1.73
4326 4582 5.815222 ACATTACTGACGCATTGCACTATTA 59.185 36.000 9.69 0.00 0.00 0.98
4327 4583 6.483307 ACATTACTGACGCATTGCACTATTAT 59.517 34.615 9.69 0.00 0.00 1.28
4391 4647 2.778299 AGAAACAAGCCAAGCGATACA 58.222 42.857 0.00 0.00 0.00 2.29
4425 4681 8.492673 TTTCTGGTTAGCATATTAACAGTCTG 57.507 34.615 0.00 0.00 35.67 3.51
4499 4761 1.340889 GTTTGCTGCCCATTTGACTCA 59.659 47.619 0.00 0.00 0.00 3.41
4517 4783 5.045359 TGACTCATCTTCATTCAGGATTGGT 60.045 40.000 0.00 0.00 0.00 3.67
4596 4862 1.670406 CTGCTCACCTGCCAGACAC 60.670 63.158 0.00 0.00 0.00 3.67
4598 4864 2.737180 CTCACCTGCCAGACACGT 59.263 61.111 0.00 0.00 0.00 4.49
4606 4872 2.671396 CCTGCCAGACACGTGTAATTAC 59.329 50.000 23.44 8.84 0.00 1.89
4610 4876 2.624636 CAGACACGTGTAATTACCCCC 58.375 52.381 23.44 5.60 0.00 5.40
4646 4919 5.011329 TGGCAGCTTTTTCTGAGATTTCAAT 59.989 36.000 0.00 0.00 36.19 2.57
4704 4977 9.833917 CAGGTATATATCGATTCTCCTGTACTA 57.166 37.037 1.71 0.00 37.16 1.82
4713 4986 6.866770 TCGATTCTCCTGTACTAACTTGTTTG 59.133 38.462 0.00 0.00 0.00 2.93
4716 4989 7.781548 TTCTCCTGTACTAACTTGTTTGTTC 57.218 36.000 5.99 2.71 0.00 3.18
4789 5067 2.622436 GAGTTGCCAGACATCTACCAC 58.378 52.381 0.00 0.00 0.00 4.16
4792 5070 1.937191 TGCCAGACATCTACCACTCA 58.063 50.000 0.00 0.00 0.00 3.41
4912 5191 1.019278 CACCGATCTTCCCCGTTGTG 61.019 60.000 0.00 0.00 0.00 3.33
4916 5195 2.198304 GATCTTCCCCGTTGTGCCCT 62.198 60.000 0.00 0.00 0.00 5.19
4917 5196 2.484287 ATCTTCCCCGTTGTGCCCTG 62.484 60.000 0.00 0.00 0.00 4.45
4918 5197 3.491598 CTTCCCCGTTGTGCCCTGT 62.492 63.158 0.00 0.00 0.00 4.00
4920 5199 3.294493 CCCCGTTGTGCCCTGTTG 61.294 66.667 0.00 0.00 0.00 3.33
4921 5200 2.518349 CCCGTTGTGCCCTGTTGT 60.518 61.111 0.00 0.00 0.00 3.32
4922 5201 1.228003 CCCGTTGTGCCCTGTTGTA 60.228 57.895 0.00 0.00 0.00 2.41
4924 5203 0.309612 CCGTTGTGCCCTGTTGTAAC 59.690 55.000 0.00 0.00 0.00 2.50
4925 5204 1.305201 CGTTGTGCCCTGTTGTAACT 58.695 50.000 0.00 0.00 0.00 2.24
4960 5249 4.717991 GATCGACAGATCCTGTAAGATCG 58.282 47.826 19.41 11.45 45.44 3.69
4963 5252 5.548406 TCGACAGATCCTGTAAGATCGATA 58.452 41.667 0.00 0.00 45.44 2.92
4966 5255 6.567687 ACAGATCCTGTAAGATCGATACAG 57.432 41.667 23.88 23.88 46.06 2.74
4969 5258 4.569761 TCCTGTAAGATCGATACAGCAC 57.430 45.455 24.77 5.13 45.70 4.40
4976 5265 9.324506 CTGTAAGATCGATACAGCACTACAGCT 62.325 44.444 21.17 0.00 42.54 4.24
4979 5268 2.492088 TCGATACAGCACTACAGCTTGT 59.508 45.455 0.00 0.00 43.70 3.16
5028 5317 1.270625 TGAAGTTTCTTGATCCGCCGT 60.271 47.619 0.00 0.00 0.00 5.68
5052 5341 5.921408 TGCTTTCGGCGTGTTTATTATTTTT 59.079 32.000 6.85 0.00 45.43 1.94
5057 5346 4.852650 CGGCGTGTTTATTATTTTTCGGTT 59.147 37.500 0.00 0.00 0.00 4.44
5058 5347 5.219877 CGGCGTGTTTATTATTTTTCGGTTG 60.220 40.000 0.00 0.00 0.00 3.77
5059 5348 5.443562 GGCGTGTTTATTATTTTTCGGTTGC 60.444 40.000 0.00 0.00 0.00 4.17
5060 5349 5.716430 GCGTGTTTATTATTTTTCGGTTGCG 60.716 40.000 0.00 0.00 0.00 4.85
5061 5350 5.564504 CGTGTTTATTATTTTTCGGTTGCGA 59.435 36.000 0.00 0.00 0.00 5.10
5062 5351 6.249682 CGTGTTTATTATTTTTCGGTTGCGAT 59.750 34.615 0.00 0.00 0.00 4.58
5063 5352 7.380320 GTGTTTATTATTTTTCGGTTGCGATG 58.620 34.615 0.00 0.00 0.00 3.84
5064 5353 6.528423 TGTTTATTATTTTTCGGTTGCGATGG 59.472 34.615 0.00 0.00 0.00 3.51
5065 5354 3.495670 TTATTTTTCGGTTGCGATGGG 57.504 42.857 0.00 0.00 0.00 4.00
5066 5355 0.108851 ATTTTTCGGTTGCGATGGGC 60.109 50.000 0.00 0.00 43.96 5.36
5067 5356 1.175983 TTTTTCGGTTGCGATGGGCT 61.176 50.000 0.00 0.00 44.05 5.19
5068 5357 1.175983 TTTTCGGTTGCGATGGGCTT 61.176 50.000 0.00 0.00 44.05 4.35
5069 5358 0.321741 TTTCGGTTGCGATGGGCTTA 60.322 50.000 0.00 0.00 44.05 3.09
5070 5359 0.321741 TTCGGTTGCGATGGGCTTAA 60.322 50.000 0.00 0.00 44.05 1.85
5071 5360 0.107410 TCGGTTGCGATGGGCTTAAT 60.107 50.000 0.00 0.00 44.05 1.40
5072 5361 0.738389 CGGTTGCGATGGGCTTAATT 59.262 50.000 0.00 0.00 44.05 1.40
5073 5362 1.134175 CGGTTGCGATGGGCTTAATTT 59.866 47.619 0.00 0.00 44.05 1.82
5074 5363 2.539476 GGTTGCGATGGGCTTAATTTG 58.461 47.619 0.00 0.00 44.05 2.32
5075 5364 1.926510 GTTGCGATGGGCTTAATTTGC 59.073 47.619 0.00 0.00 44.05 3.68
5084 5373 2.076100 GGCTTAATTTGCCCAAACAGC 58.924 47.619 10.10 10.63 44.32 4.40
5085 5374 2.289631 GGCTTAATTTGCCCAAACAGCT 60.290 45.455 15.38 0.00 44.32 4.24
5127 5416 1.160137 GTGTTAGCTGAGCTGTTGGG 58.840 55.000 18.79 0.00 40.10 4.12
5156 5446 1.961793 AAGCTACTGAAAACGGTGCA 58.038 45.000 0.00 0.00 0.00 4.57
5187 5478 3.581265 TCATCTGCCTGGATTTGCATA 57.419 42.857 0.00 0.00 36.79 3.14
5188 5479 3.900971 TCATCTGCCTGGATTTGCATAA 58.099 40.909 0.00 0.00 36.79 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.546507 TACCAGCCTCCCACATGTGA 60.547 55.000 27.46 7.26 0.00 3.58
9 11 1.617947 CCTCACTACCAGCCTCCCAC 61.618 65.000 0.00 0.00 0.00 4.61
18 20 3.211045 GTTGTTTCTTGCCTCACTACCA 58.789 45.455 0.00 0.00 0.00 3.25
19 21 2.223377 CGTTGTTTCTTGCCTCACTACC 59.777 50.000 0.00 0.00 0.00 3.18
23 25 2.844122 AACGTTGTTTCTTGCCTCAC 57.156 45.000 0.00 0.00 0.00 3.51
27 29 7.272731 GGAATCTTAATAACGTTGTTTCTTGCC 59.727 37.037 15.67 7.38 0.00 4.52
43 45 7.175990 CGGCTACTCTAGAGAAGGAATCTTAAT 59.824 40.741 26.57 1.38 38.96 1.40
47 49 4.103469 TCGGCTACTCTAGAGAAGGAATCT 59.897 45.833 26.57 3.62 42.61 2.40
51 53 3.039743 TCTCGGCTACTCTAGAGAAGGA 58.960 50.000 26.57 13.42 36.88 3.36
55 57 3.118186 AGCTTTCTCGGCTACTCTAGAGA 60.118 47.826 26.57 9.01 38.36 3.10
59 61 2.946329 CAGAGCTTTCTCGGCTACTCTA 59.054 50.000 0.00 0.00 44.02 2.43
60 62 1.748493 CAGAGCTTTCTCGGCTACTCT 59.252 52.381 0.00 0.00 44.02 3.24
61 63 1.746220 TCAGAGCTTTCTCGGCTACTC 59.254 52.381 0.00 0.00 44.02 2.59
62 64 1.474879 GTCAGAGCTTTCTCGGCTACT 59.525 52.381 0.00 0.00 44.02 2.57
63 65 1.474879 AGTCAGAGCTTTCTCGGCTAC 59.525 52.381 0.00 0.00 44.02 3.58
64 66 1.840737 AGTCAGAGCTTTCTCGGCTA 58.159 50.000 0.00 0.00 44.02 3.93
65 67 0.972883 AAGTCAGAGCTTTCTCGGCT 59.027 50.000 0.00 0.00 44.02 5.52
78 81 6.082338 GCACAATGAAGTCAACATAAGTCAG 58.918 40.000 0.00 0.00 0.00 3.51
81 84 5.764686 TCTGCACAATGAAGTCAACATAAGT 59.235 36.000 0.00 0.00 0.00 2.24
124 132 5.236478 GGATATACGGTTGTGTCATTCCTTG 59.764 44.000 0.00 0.00 0.00 3.61
125 133 5.130477 AGGATATACGGTTGTGTCATTCCTT 59.870 40.000 0.00 0.00 0.00 3.36
127 135 4.750098 CAGGATATACGGTTGTGTCATTCC 59.250 45.833 0.00 0.00 0.00 3.01
129 137 5.353394 ACAGGATATACGGTTGTGTCATT 57.647 39.130 0.00 0.00 0.00 2.57
130 138 5.353394 AACAGGATATACGGTTGTGTCAT 57.647 39.130 2.32 0.00 0.00 3.06
131 139 4.811969 AACAGGATATACGGTTGTGTCA 57.188 40.909 2.32 0.00 0.00 3.58
132 140 7.254658 CCATTTAACAGGATATACGGTTGTGTC 60.255 40.741 13.14 0.00 0.00 3.67
133 141 6.540914 CCATTTAACAGGATATACGGTTGTGT 59.459 38.462 13.14 0.00 0.00 3.72
134 142 6.017440 CCCATTTAACAGGATATACGGTTGTG 60.017 42.308 13.14 9.02 0.00 3.33
135 143 6.059484 CCCATTTAACAGGATATACGGTTGT 58.941 40.000 13.14 0.00 0.00 3.32
136 144 6.059484 ACCCATTTAACAGGATATACGGTTG 58.941 40.000 13.14 0.00 0.00 3.77
137 145 6.256643 ACCCATTTAACAGGATATACGGTT 57.743 37.500 8.58 8.58 0.00 4.44
138 146 5.899631 ACCCATTTAACAGGATATACGGT 57.100 39.130 0.00 0.00 0.00 4.83
145 156 3.245586 TGGCAGAACCCATTTAACAGGAT 60.246 43.478 0.00 0.00 37.83 3.24
179 190 0.108233 TATCCACGTTAACCGCCACC 60.108 55.000 0.00 0.00 41.42 4.61
191 205 5.103000 CCTTTGAAGAGTGTAGTATCCACG 58.897 45.833 0.00 0.00 37.88 4.94
198 212 5.477291 TCGAGATTCCTTTGAAGAGTGTAGT 59.523 40.000 0.00 0.00 33.05 2.73
201 215 4.873746 TCGAGATTCCTTTGAAGAGTGT 57.126 40.909 0.00 0.00 33.05 3.55
212 226 4.396357 ACTCCTATCCATCGAGATTCCT 57.604 45.455 0.00 0.00 0.00 3.36
216 230 2.564947 GCCAACTCCTATCCATCGAGAT 59.435 50.000 0.00 0.00 0.00 2.75
228 242 4.202503 CCTGATTATACCATGCCAACTCCT 60.203 45.833 0.00 0.00 0.00 3.69
232 246 5.769662 TGATTCCTGATTATACCATGCCAAC 59.230 40.000 0.00 0.00 0.00 3.77
243 257 8.358148 GCAATCTTCAATGTGATTCCTGATTAT 58.642 33.333 2.52 0.00 31.35 1.28
254 268 4.796946 GCCAACAAGCAATCTTCAATGTGA 60.797 41.667 0.00 0.00 0.00 3.58
306 320 3.055094 AGTGCTCCCGTTAGTTTCATCAT 60.055 43.478 0.00 0.00 0.00 2.45
307 321 2.301870 AGTGCTCCCGTTAGTTTCATCA 59.698 45.455 0.00 0.00 0.00 3.07
308 322 2.673368 CAGTGCTCCCGTTAGTTTCATC 59.327 50.000 0.00 0.00 0.00 2.92
309 323 2.301870 TCAGTGCTCCCGTTAGTTTCAT 59.698 45.455 0.00 0.00 0.00 2.57
310 324 1.689813 TCAGTGCTCCCGTTAGTTTCA 59.310 47.619 0.00 0.00 0.00 2.69
311 325 2.450609 TCAGTGCTCCCGTTAGTTTC 57.549 50.000 0.00 0.00 0.00 2.78
312 326 2.038557 ACATCAGTGCTCCCGTTAGTTT 59.961 45.455 0.00 0.00 0.00 2.66
315 329 2.386661 AACATCAGTGCTCCCGTTAG 57.613 50.000 0.00 0.00 0.00 2.34
318 332 1.066143 CCTTAACATCAGTGCTCCCGT 60.066 52.381 0.00 0.00 0.00 5.28
320 334 1.383523 GCCTTAACATCAGTGCTCCC 58.616 55.000 0.00 0.00 0.00 4.30
322 336 1.394917 CACGCCTTAACATCAGTGCTC 59.605 52.381 0.00 0.00 0.00 4.26
349 363 1.609501 CTTCCTGACGGGTGGGAGA 60.610 63.158 0.00 0.00 36.25 3.71
353 367 2.804828 GAAGCCTTCCTGACGGGTGG 62.805 65.000 0.00 5.55 36.25 4.61
369 383 6.542370 TCTGACTAAAAACAACCCTTGAGAAG 59.458 38.462 0.00 0.00 0.00 2.85
372 386 5.823045 AGTCTGACTAAAAACAACCCTTGAG 59.177 40.000 8.91 0.00 0.00 3.02
381 395 6.431198 GGACAAACAGTCTGACTAAAAACA 57.569 37.500 10.47 0.00 46.72 2.83
432 447 2.107750 CACCTGCGAGCGATCCAT 59.892 61.111 0.00 0.00 0.00 3.41
434 449 4.899239 CCCACCTGCGAGCGATCC 62.899 72.222 0.00 0.00 0.00 3.36
445 460 5.605540 ATCAATAATGATAAGCCCCACCT 57.394 39.130 0.00 0.00 44.50 4.00
463 478 5.185454 ACGATGCCAACTTCTTCATATCAA 58.815 37.500 0.00 0.00 0.00 2.57
482 497 0.456312 GAACGGACGAGCAGAACGAT 60.456 55.000 0.00 0.00 34.70 3.73
490 505 1.322637 GATTAAACCGAACGGACGAGC 59.677 52.381 20.14 2.32 38.96 5.03
503 518 6.033341 TGGCAAGCGATTTACATGATTAAAC 58.967 36.000 0.00 0.00 0.00 2.01
525 540 7.067372 TCAGTTAGAATATGCCAAGACATTTGG 59.933 37.037 1.59 1.59 42.37 3.28
534 549 7.337938 TCACAAGATCAGTTAGAATATGCCAA 58.662 34.615 0.00 0.00 0.00 4.52
605 627 4.410555 GGAGGATAATCAAGAGGGAGTGTT 59.589 45.833 0.00 0.00 0.00 3.32
606 628 3.970640 GGAGGATAATCAAGAGGGAGTGT 59.029 47.826 0.00 0.00 0.00 3.55
624 646 7.490725 GTGTCGATCATGATTTATAGATGGAGG 59.509 40.741 10.14 0.00 0.00 4.30
627 649 7.029563 TCGTGTCGATCATGATTTATAGATGG 58.970 38.462 10.14 0.00 37.18 3.51
628 650 8.626093 ATCGTGTCGATCATGATTTATAGATG 57.374 34.615 10.14 0.95 46.84 2.90
638 660 4.142469 ACAGTACAATCGTGTCGATCATGA 60.142 41.667 0.00 0.00 46.30 3.07
645 667 4.163552 ACATACACAGTACAATCGTGTCG 58.836 43.478 11.95 8.65 42.65 4.35
646 668 6.073980 ACAAACATACACAGTACAATCGTGTC 60.074 38.462 11.95 0.00 42.65 3.67
647 669 5.756347 ACAAACATACACAGTACAATCGTGT 59.244 36.000 12.84 12.84 45.42 4.49
648 670 6.070829 CACAAACATACACAGTACAATCGTG 58.929 40.000 0.00 0.00 36.70 4.35
649 671 5.756347 ACACAAACATACACAGTACAATCGT 59.244 36.000 0.00 0.00 0.00 3.73
650 672 6.223138 ACACAAACATACACAGTACAATCG 57.777 37.500 0.00 0.00 0.00 3.34
651 673 8.717821 ACATACACAAACATACACAGTACAATC 58.282 33.333 0.00 0.00 0.00 2.67
652 674 8.503196 CACATACACAAACATACACAGTACAAT 58.497 33.333 0.00 0.00 0.00 2.71
653 675 7.711339 TCACATACACAAACATACACAGTACAA 59.289 33.333 0.00 0.00 0.00 2.41
654 676 7.210873 TCACATACACAAACATACACAGTACA 58.789 34.615 0.00 0.00 0.00 2.90
655 677 7.621426 GCTCACATACACAAACATACACAGTAC 60.621 40.741 0.00 0.00 0.00 2.73
656 678 6.367695 GCTCACATACACAAACATACACAGTA 59.632 38.462 0.00 0.00 0.00 2.74
657 679 5.179368 GCTCACATACACAAACATACACAGT 59.821 40.000 0.00 0.00 0.00 3.55
658 680 5.409520 AGCTCACATACACAAACATACACAG 59.590 40.000 0.00 0.00 0.00 3.66
659 681 5.304778 AGCTCACATACACAAACATACACA 58.695 37.500 0.00 0.00 0.00 3.72
660 682 5.862924 AGCTCACATACACAAACATACAC 57.137 39.130 0.00 0.00 0.00 2.90
661 683 6.697395 AGTAGCTCACATACACAAACATACA 58.303 36.000 0.00 0.00 0.00 2.29
662 684 7.596749 AAGTAGCTCACATACACAAACATAC 57.403 36.000 0.00 0.00 0.00 2.39
663 685 7.875554 TCAAAGTAGCTCACATACACAAACATA 59.124 33.333 0.00 0.00 0.00 2.29
664 686 6.710295 TCAAAGTAGCTCACATACACAAACAT 59.290 34.615 0.00 0.00 0.00 2.71
665 687 6.052360 TCAAAGTAGCTCACATACACAAACA 58.948 36.000 0.00 0.00 0.00 2.83
666 688 6.539649 TCAAAGTAGCTCACATACACAAAC 57.460 37.500 0.00 0.00 0.00 2.93
667 689 7.443879 TCAATCAAAGTAGCTCACATACACAAA 59.556 33.333 0.00 0.00 0.00 2.83
668 690 6.934083 TCAATCAAAGTAGCTCACATACACAA 59.066 34.615 0.00 0.00 0.00 3.33
669 691 6.463360 TCAATCAAAGTAGCTCACATACACA 58.537 36.000 0.00 0.00 0.00 3.72
670 692 6.968131 TCAATCAAAGTAGCTCACATACAC 57.032 37.500 0.00 0.00 0.00 2.90
671 693 7.607607 ACAATCAATCAAAGTAGCTCACATACA 59.392 33.333 0.00 0.00 0.00 2.29
672 694 7.978982 ACAATCAATCAAAGTAGCTCACATAC 58.021 34.615 0.00 0.00 0.00 2.39
673 695 9.836864 ATACAATCAATCAAAGTAGCTCACATA 57.163 29.630 0.00 0.00 0.00 2.29
674 696 8.743085 ATACAATCAATCAAAGTAGCTCACAT 57.257 30.769 0.00 0.00 0.00 3.21
675 697 8.453320 CAATACAATCAATCAAAGTAGCTCACA 58.547 33.333 0.00 0.00 0.00 3.58
676 698 8.454106 ACAATACAATCAATCAAAGTAGCTCAC 58.546 33.333 0.00 0.00 0.00 3.51
677 699 8.453320 CACAATACAATCAATCAAAGTAGCTCA 58.547 33.333 0.00 0.00 0.00 4.26
678 700 8.454106 ACACAATACAATCAATCAAAGTAGCTC 58.546 33.333 0.00 0.00 0.00 4.09
679 701 8.340618 ACACAATACAATCAATCAAAGTAGCT 57.659 30.769 0.00 0.00 0.00 3.32
680 702 8.970691 AACACAATACAATCAATCAAAGTAGC 57.029 30.769 0.00 0.00 0.00 3.58
708 730 8.647226 GCAAAAGAATATCACGCTGTAATTTTT 58.353 29.630 0.00 0.00 0.00 1.94
709 731 8.028938 AGCAAAAGAATATCACGCTGTAATTTT 58.971 29.630 0.00 0.00 0.00 1.82
710 732 7.538575 AGCAAAAGAATATCACGCTGTAATTT 58.461 30.769 0.00 0.00 0.00 1.82
711 733 7.088589 AGCAAAAGAATATCACGCTGTAATT 57.911 32.000 0.00 0.00 0.00 1.40
712 734 6.683974 AGCAAAAGAATATCACGCTGTAAT 57.316 33.333 0.00 0.00 0.00 1.89
713 735 7.603963 TTAGCAAAAGAATATCACGCTGTAA 57.396 32.000 0.00 0.00 0.00 2.41
714 736 7.603963 TTTAGCAAAAGAATATCACGCTGTA 57.396 32.000 0.00 0.00 0.00 2.74
715 737 6.494893 TTTAGCAAAAGAATATCACGCTGT 57.505 33.333 0.00 0.00 0.00 4.40
716 738 7.795431 TTTTTAGCAAAAGAATATCACGCTG 57.205 32.000 0.00 0.00 0.00 5.18
737 759 4.632153 ACACGATGCAGTACTCTCTTTTT 58.368 39.130 0.00 0.00 0.00 1.94
738 760 4.238514 GACACGATGCAGTACTCTCTTTT 58.761 43.478 0.00 0.00 0.00 2.27
739 761 3.367498 GGACACGATGCAGTACTCTCTTT 60.367 47.826 0.00 0.00 0.00 2.52
740 762 2.164624 GGACACGATGCAGTACTCTCTT 59.835 50.000 0.00 0.00 0.00 2.85
741 763 1.746220 GGACACGATGCAGTACTCTCT 59.254 52.381 0.00 0.00 0.00 3.10
742 764 1.746220 AGGACACGATGCAGTACTCTC 59.254 52.381 0.00 0.00 0.00 3.20
743 765 1.840737 AGGACACGATGCAGTACTCT 58.159 50.000 0.00 0.00 0.00 3.24
744 766 3.992260 ATAGGACACGATGCAGTACTC 57.008 47.619 0.00 0.00 30.05 2.59
753 775 4.548991 GTGACGAACTATAGGACACGAT 57.451 45.455 4.43 0.00 0.00 3.73
759 781 4.701651 TCTTTTCCGTGACGAACTATAGGA 59.298 41.667 6.54 0.00 0.00 2.94
778 800 4.537135 TCGTATTCCTTGCTGTCTCTTT 57.463 40.909 0.00 0.00 0.00 2.52
785 807 2.404215 CGGGTATCGTATTCCTTGCTG 58.596 52.381 0.00 0.00 0.00 4.41
808 830 7.589587 CACTTCTGTTTTTGGTTTTGTTTTTCC 59.410 33.333 0.00 0.00 0.00 3.13
857 879 4.947147 GCGGCCCCACTTGTGTCA 62.947 66.667 0.00 0.00 0.00 3.58
870 892 1.596477 GGTGAGATGAGATGGCGGC 60.596 63.158 0.00 0.00 0.00 6.53
887 909 1.725169 TTGGGACTTTGGGAGGGTGG 61.725 60.000 0.00 0.00 0.00 4.61
889 911 2.081585 GCTTGGGACTTTGGGAGGGT 62.082 60.000 0.00 0.00 0.00 4.34
1277 1327 0.827925 AGCAGTGAACAGAGGACGGA 60.828 55.000 0.00 0.00 0.00 4.69
1279 1329 1.528586 CAAAGCAGTGAACAGAGGACG 59.471 52.381 0.00 0.00 0.00 4.79
1292 1342 1.699656 CCACGCGAGATCCAAAGCAG 61.700 60.000 15.93 0.00 0.00 4.24
1293 1343 1.741401 CCACGCGAGATCCAAAGCA 60.741 57.895 15.93 0.00 0.00 3.91
1320 1370 7.661847 AGAAAGCATACAATGGCCTAGTATAAC 59.338 37.037 3.32 5.76 0.00 1.89
1342 1392 9.598517 ACAATTTTTGAATAAACTCAGCAGAAA 57.401 25.926 0.00 0.00 0.00 2.52
1345 1396 8.578308 TGACAATTTTTGAATAAACTCAGCAG 57.422 30.769 0.00 0.00 0.00 4.24
1381 1445 6.634805 ACCTAGAAATCTACTGATGTGTGTG 58.365 40.000 0.00 0.00 32.44 3.82
1382 1446 6.859112 ACCTAGAAATCTACTGATGTGTGT 57.141 37.500 0.00 0.00 32.44 3.72
1402 1466 5.221986 ACCCTTTTCCTTTTACATCGTACCT 60.222 40.000 0.00 0.00 0.00 3.08
1403 1467 5.005740 ACCCTTTTCCTTTTACATCGTACC 58.994 41.667 0.00 0.00 0.00 3.34
1414 1479 4.518278 AAATTTGCCACCCTTTTCCTTT 57.482 36.364 0.00 0.00 0.00 3.11
1464 1544 1.816074 TAAACACGGGGCAGCTTAAG 58.184 50.000 0.00 0.00 0.00 1.85
1476 1556 7.497404 TGCAATTCGATTCAAAAATAAACACG 58.503 30.769 0.00 0.00 0.00 4.49
1479 1559 8.707839 TCCTTGCAATTCGATTCAAAAATAAAC 58.292 29.630 0.00 0.00 0.00 2.01
1529 1618 8.960591 ACATGGAGTAACTTATTTTGAATCCTG 58.039 33.333 0.00 0.00 0.00 3.86
1553 1642 7.655732 CGATGGTGGATTAGTATGTTGAATACA 59.344 37.037 0.00 0.00 41.97 2.29
1585 1678 4.572950 GCGAATTGCCTTGAAAAATCTG 57.427 40.909 0.00 0.00 37.76 2.90
1611 1706 2.249139 ACCAGACCAGACCTACTGTTC 58.751 52.381 0.00 0.00 44.40 3.18
1612 1707 2.400467 ACCAGACCAGACCTACTGTT 57.600 50.000 0.00 0.00 44.40 3.16
1672 1767 8.499162 CCCTATGAATACATCGAGTCATTTTTC 58.501 37.037 0.00 0.00 37.87 2.29
1693 1788 4.003584 TGCTACTCAAACCTACCCCTAT 57.996 45.455 0.00 0.00 0.00 2.57
1725 1820 7.307396 CCCATATTCGTGACTAACTGCATTTAG 60.307 40.741 19.18 19.18 35.50 1.85
1734 1829 4.117685 GTGTCCCCATATTCGTGACTAAC 58.882 47.826 0.00 0.00 0.00 2.34
1779 1874 2.079158 CTGTCACAAGCATTCCACGAT 58.921 47.619 0.00 0.00 0.00 3.73
1909 2015 8.691661 AACCTTGTTGAACTTAGTAATGACAT 57.308 30.769 0.00 0.00 0.00 3.06
1916 2022 6.646267 ACACTGAACCTTGTTGAACTTAGTA 58.354 36.000 0.00 0.00 0.00 1.82
1936 2042 4.564406 CCTTTGCTCTTATCACCAGACACT 60.564 45.833 0.00 0.00 0.00 3.55
1987 2093 0.390124 ACCATGCCACTTTGTTGCTG 59.610 50.000 0.00 0.00 0.00 4.41
2058 2165 1.272313 ACAGCTCCCAACTGCATGAAT 60.272 47.619 0.00 0.00 38.79 2.57
2062 2169 1.209019 CTAGACAGCTCCCAACTGCAT 59.791 52.381 0.00 0.00 38.79 3.96
2099 2206 7.893124 AGCAATCAACATTGAGAAGGATAAT 57.107 32.000 0.23 0.00 41.97 1.28
2100 2207 7.177216 ACAAGCAATCAACATTGAGAAGGATAA 59.823 33.333 0.23 0.00 41.97 1.75
2174 2281 6.572519 TGATTTATGCAAATTTACCAGAGGC 58.427 36.000 0.00 0.00 34.44 4.70
2195 2302 9.956640 AGAACTTCTTTGATGTTTCTATCTGAT 57.043 29.630 0.00 0.00 31.62 2.90
2261 2369 4.708177 TGCTGGCAGATATCTTTCCTTAC 58.292 43.478 20.86 9.93 0.00 2.34
2266 2374 6.874288 AGTTATTGCTGGCAGATATCTTTC 57.126 37.500 20.86 0.00 0.00 2.62
2270 2378 8.786898 TCATAAAAGTTATTGCTGGCAGATATC 58.213 33.333 20.86 7.36 0.00 1.63
2271 2379 8.571336 GTCATAAAAGTTATTGCTGGCAGATAT 58.429 33.333 20.86 12.54 0.00 1.63
2293 2402 7.750229 TCATGCTAAAAGAACTTCAAGTCAT 57.250 32.000 0.00 0.00 0.00 3.06
2356 2465 8.739972 CAAGGTGCATAGGTAAACTAAAATTCT 58.260 33.333 0.00 0.00 34.79 2.40
2363 2472 4.382254 CGGTCAAGGTGCATAGGTAAACTA 60.382 45.833 0.00 0.00 35.80 2.24
2434 2543 6.071616 TGGCAATTTGATCCTTGTTAACCTAC 60.072 38.462 2.48 0.00 0.00 3.18
2589 2699 9.905171 CTTATATTAGTTTACGGAGGGAGTAAC 57.095 37.037 0.00 0.00 34.25 2.50
2594 2704 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2595 2705 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2596 2706 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2597 2707 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2598 2708 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2599 2709 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2645 2755 9.490379 CCCTCTGTAAATTAATATAAGAGCGTT 57.510 33.333 9.98 0.00 0.00 4.84
2646 2756 8.867097 TCCCTCTGTAAATTAATATAAGAGCGT 58.133 33.333 9.98 0.00 0.00 5.07
2647 2757 9.360093 CTCCCTCTGTAAATTAATATAAGAGCG 57.640 37.037 9.98 4.77 0.00 5.03
2660 2770 9.668497 GAACTGTTATTTACTCCCTCTGTAAAT 57.332 33.333 13.82 13.82 46.17 1.40
2661 2771 8.653191 TGAACTGTTATTTACTCCCTCTGTAAA 58.347 33.333 0.00 0.00 41.94 2.01
2662 2772 8.092687 GTGAACTGTTATTTACTCCCTCTGTAA 58.907 37.037 0.00 0.00 0.00 2.41
2663 2773 7.453752 AGTGAACTGTTATTTACTCCCTCTGTA 59.546 37.037 0.00 0.00 0.00 2.74
2664 2774 6.270231 AGTGAACTGTTATTTACTCCCTCTGT 59.730 38.462 0.00 0.00 0.00 3.41
2665 2775 6.702329 AGTGAACTGTTATTTACTCCCTCTG 58.298 40.000 0.00 0.00 0.00 3.35
2666 2776 6.497259 TGAGTGAACTGTTATTTACTCCCTCT 59.503 38.462 16.85 1.46 41.95 3.69
2667 2777 6.698380 TGAGTGAACTGTTATTTACTCCCTC 58.302 40.000 16.85 3.08 41.95 4.30
2668 2778 6.681729 TGAGTGAACTGTTATTTACTCCCT 57.318 37.500 16.85 0.00 41.95 4.20
2669 2779 7.923414 AATGAGTGAACTGTTATTTACTCCC 57.077 36.000 16.85 3.35 41.95 4.30
2670 2780 8.784043 ACAAATGAGTGAACTGTTATTTACTCC 58.216 33.333 16.85 6.68 41.95 3.85
2674 2784 9.226606 CCCTACAAATGAGTGAACTGTTATTTA 57.773 33.333 0.00 0.00 0.00 1.40
2675 2785 7.309194 GCCCTACAAATGAGTGAACTGTTATTT 60.309 37.037 0.00 0.00 0.00 1.40
2676 2786 6.151144 GCCCTACAAATGAGTGAACTGTTATT 59.849 38.462 0.00 0.00 0.00 1.40
2739 2849 2.608623 ACCTTCACCAAATTTGAGGGG 58.391 47.619 19.86 16.56 43.05 4.79
2977 3097 1.815003 CCATCTGGTTGCTGGAGTTTC 59.185 52.381 0.00 0.00 33.99 2.78
3006 3126 2.420022 CCATGGAGACCAAAGCTAAACG 59.580 50.000 5.56 0.00 36.95 3.60
3111 3231 7.046033 TCCGGTGATTCTTTCCTAGAAAATAC 58.954 38.462 0.00 0.00 45.62 1.89
3125 3249 4.225267 AGGTGAAACTATTCCGGTGATTCT 59.775 41.667 0.00 0.00 36.74 2.40
3126 3250 4.514401 AGGTGAAACTATTCCGGTGATTC 58.486 43.478 0.00 2.35 36.74 2.52
3127 3251 4.569719 AGGTGAAACTATTCCGGTGATT 57.430 40.909 0.00 0.00 36.74 2.57
3128 3252 4.715297 ACTAGGTGAAACTATTCCGGTGAT 59.285 41.667 0.00 0.00 36.74 3.06
3209 3333 9.383519 GAAACAGAACTATAATGAAGGATGTGA 57.616 33.333 0.00 0.00 0.00 3.58
3256 3380 3.991773 CACATGGTGAATGAAAAGGCTTG 59.008 43.478 0.00 0.00 38.72 4.01
3270 3394 5.313520 TGCAGATGAAATTACACATGGTG 57.686 39.130 0.00 0.00 39.75 4.17
3403 3527 5.335191 GCACTAGACTACTTGCAAGCATTTT 60.335 40.000 26.27 9.04 32.19 1.82
3443 3567 7.663043 TGACCAATAAAACAGGTAAAAAGGT 57.337 32.000 0.00 0.00 35.36 3.50
3445 3569 9.244799 GAGTTGACCAATAAAACAGGTAAAAAG 57.755 33.333 0.00 0.00 35.36 2.27
3448 3572 7.776030 TCTGAGTTGACCAATAAAACAGGTAAA 59.224 33.333 0.00 0.00 35.36 2.01
3544 3668 5.641209 CCAATATGAGTAGGCATGAAGCTAC 59.359 44.000 0.00 0.00 44.79 3.58
3661 3789 4.401022 TGAGAACAGAGACCAAATGCATT 58.599 39.130 5.99 5.99 0.00 3.56
3671 3799 0.242286 TCGCAGCTGAGAACAGAGAC 59.758 55.000 20.43 0.00 46.03 3.36
3672 3800 1.133982 GATCGCAGCTGAGAACAGAGA 59.866 52.381 24.24 0.00 46.03 3.10
3773 4018 6.092955 TCTTACATCACTCAAAACTACGGT 57.907 37.500 0.00 0.00 0.00 4.83
3774 4019 6.157211 ACTCTTACATCACTCAAAACTACGG 58.843 40.000 0.00 0.00 0.00 4.02
3784 4029 6.568869 ACTGCAGAATACTCTTACATCACTC 58.431 40.000 23.35 0.00 0.00 3.51
3958 4205 6.350906 ACTTAACTTAGTTGCCACACAGTTA 58.649 36.000 8.00 7.50 32.39 2.24
3961 4208 5.057149 AGACTTAACTTAGTTGCCACACAG 58.943 41.667 8.00 0.00 0.00 3.66
4185 4437 4.408182 AGTGGATAACTGCAGATACACC 57.592 45.455 23.35 19.03 37.88 4.16
4205 4457 4.442706 ACGTCATGTAAGGGCAGATTTAG 58.557 43.478 0.00 0.00 0.00 1.85
4210 4462 3.965379 TTTACGTCATGTAAGGGCAGA 57.035 42.857 0.00 0.00 43.63 4.26
4211 4463 5.331902 CATTTTTACGTCATGTAAGGGCAG 58.668 41.667 0.00 0.00 43.63 4.85
4213 4465 4.102649 GCATTTTTACGTCATGTAAGGGC 58.897 43.478 0.00 0.00 43.63 5.19
4214 4466 5.092781 GTGCATTTTTACGTCATGTAAGGG 58.907 41.667 0.00 0.00 43.63 3.95
4255 4510 8.023128 GCATTTTTGCTAACAGTTCAGATCTAA 58.977 33.333 0.00 0.00 0.00 2.10
4258 4513 5.574443 GGCATTTTTGCTAACAGTTCAGATC 59.426 40.000 0.00 0.00 34.73 2.75
4266 4521 7.761249 AGCTAATAAAGGCATTTTTGCTAACAG 59.239 33.333 0.00 0.00 34.73 3.16
4268 4523 8.479313 AAGCTAATAAAGGCATTTTTGCTAAC 57.521 30.769 0.00 0.00 34.73 2.34
4281 4536 4.873827 TGTTCACCGCTAAGCTAATAAAGG 59.126 41.667 0.00 0.00 0.00 3.11
4295 4550 0.094730 GCGTCAGTAATGTTCACCGC 59.905 55.000 0.00 0.00 0.00 5.68
4321 4577 6.707608 TGCTTGCCTCTACACAATGATAATAG 59.292 38.462 0.00 0.00 0.00 1.73
4324 4580 4.842574 TGCTTGCCTCTACACAATGATAA 58.157 39.130 0.00 0.00 0.00 1.75
4325 4581 4.445453 CTGCTTGCCTCTACACAATGATA 58.555 43.478 0.00 0.00 0.00 2.15
4326 4582 3.276857 CTGCTTGCCTCTACACAATGAT 58.723 45.455 0.00 0.00 0.00 2.45
4327 4583 2.703416 CTGCTTGCCTCTACACAATGA 58.297 47.619 0.00 0.00 0.00 2.57
4425 4681 6.538742 TGCTTCTCAGCCAAATAACAGTATAC 59.461 38.462 0.00 0.00 46.74 1.47
4433 4692 2.094675 GCCTGCTTCTCAGCCAAATAA 58.905 47.619 0.00 0.00 46.74 1.40
4499 4761 3.294214 GCCACCAATCCTGAATGAAGAT 58.706 45.455 0.00 0.00 0.00 2.40
4517 4783 1.811965 CCAATCATCTTCAACACGCCA 59.188 47.619 0.00 0.00 0.00 5.69
4596 4862 1.746787 GGCTTTGGGGGTAATTACACG 59.253 52.381 17.16 1.94 0.00 4.49
4598 4864 2.024751 GGAGGCTTTGGGGGTAATTACA 60.025 50.000 17.16 0.00 0.00 2.41
4606 4872 1.686800 CCAATGGAGGCTTTGGGGG 60.687 63.158 8.32 0.00 38.98 5.40
4690 4963 7.964604 ACAAACAAGTTAGTACAGGAGAATC 57.035 36.000 0.00 0.00 0.00 2.52
4693 4966 7.120923 AGAACAAACAAGTTAGTACAGGAGA 57.879 36.000 0.00 0.00 0.00 3.71
4727 5004 1.139058 GCCTCCATACTGTCGTCCAAT 59.861 52.381 0.00 0.00 0.00 3.16
4741 5019 1.065418 GGGAATTTCGAGAAGCCTCCA 60.065 52.381 10.19 0.00 36.04 3.86
4789 5067 0.235144 CCGCGAGACCGTAGTATGAG 59.765 60.000 8.23 0.00 38.24 2.90
4792 5070 2.550101 GGCCGCGAGACCGTAGTAT 61.550 63.158 8.23 0.00 38.24 2.12
4816 5094 1.695597 CTCCTCCTCCCCCAGCAAT 60.696 63.158 0.00 0.00 0.00 3.56
4885 5163 2.044946 AAGATCGGTGCCTTGGCC 60.045 61.111 9.35 0.00 0.00 5.36
4912 5191 3.380320 ACAAAACTGAGTTACAACAGGGC 59.620 43.478 0.00 0.00 38.30 5.19
4916 5195 4.154375 TCGCAACAAAACTGAGTTACAACA 59.846 37.500 0.00 0.00 0.00 3.33
4917 5196 4.654015 TCGCAACAAAACTGAGTTACAAC 58.346 39.130 0.00 0.00 0.00 3.32
4918 5197 4.948608 TCGCAACAAAACTGAGTTACAA 57.051 36.364 0.00 0.00 0.00 2.41
4920 5199 4.084745 TCGATCGCAACAAAACTGAGTTAC 60.085 41.667 11.09 0.00 0.00 2.50
4921 5200 4.052608 TCGATCGCAACAAAACTGAGTTA 58.947 39.130 11.09 0.00 0.00 2.24
4922 5201 2.869801 TCGATCGCAACAAAACTGAGTT 59.130 40.909 11.09 0.00 0.00 3.01
4924 5203 2.220824 TGTCGATCGCAACAAAACTGAG 59.779 45.455 11.09 0.00 0.00 3.35
4925 5204 2.205911 TGTCGATCGCAACAAAACTGA 58.794 42.857 11.09 0.00 0.00 3.41
4949 5238 4.576216 AGTGCTGTATCGATCTTACAGG 57.424 45.455 22.21 9.25 44.33 4.00
4960 5249 2.932614 CCACAAGCTGTAGTGCTGTATC 59.067 50.000 8.30 0.00 43.24 2.24
4963 5252 0.886490 GCCACAAGCTGTAGTGCTGT 60.886 55.000 8.30 0.00 43.24 4.40
4976 5265 2.224018 GCTTCCATGTTTTCAGCCACAA 60.224 45.455 0.00 0.00 0.00 3.33
4979 5268 1.702182 TGCTTCCATGTTTTCAGCCA 58.298 45.000 0.00 0.00 0.00 4.75
5028 5317 4.688511 AATAATAAACACGCCGAAAGCA 57.311 36.364 0.00 0.00 44.04 3.91
5057 5346 0.459489 GGCAAATTAAGCCCATCGCA 59.541 50.000 10.04 0.00 46.50 5.10
5058 5347 3.272766 GGCAAATTAAGCCCATCGC 57.727 52.632 10.04 0.00 46.50 4.58
5065 5354 2.738314 CAGCTGTTTGGGCAAATTAAGC 59.262 45.455 5.25 0.00 35.85 3.09
5066 5355 3.742369 CACAGCTGTTTGGGCAAATTAAG 59.258 43.478 18.94 0.00 32.36 1.85
5067 5356 3.726607 CACAGCTGTTTGGGCAAATTAA 58.273 40.909 18.94 0.00 32.36 1.40
5068 5357 2.547642 GCACAGCTGTTTGGGCAAATTA 60.548 45.455 18.94 0.00 46.71 1.40
5069 5358 1.811176 GCACAGCTGTTTGGGCAAATT 60.811 47.619 18.94 0.00 46.71 1.82
5070 5359 0.249996 GCACAGCTGTTTGGGCAAAT 60.250 50.000 18.94 0.00 46.71 2.32
5071 5360 1.143620 GCACAGCTGTTTGGGCAAA 59.856 52.632 18.94 0.00 46.71 3.68
5072 5361 2.813901 GCACAGCTGTTTGGGCAA 59.186 55.556 18.94 0.00 46.71 4.52
5075 5364 0.820891 ACAGAGCACAGCTGTTTGGG 60.821 55.000 18.94 7.13 43.67 4.12
5076 5365 2.711711 ACAGAGCACAGCTGTTTGG 58.288 52.632 18.94 7.55 43.67 3.28
5081 5370 1.799403 CTTCAGAACAGAGCACAGCTG 59.201 52.381 13.48 13.48 39.88 4.24
5082 5371 1.415659 ACTTCAGAACAGAGCACAGCT 59.584 47.619 0.00 0.00 43.88 4.24
5083 5372 1.876322 ACTTCAGAACAGAGCACAGC 58.124 50.000 0.00 0.00 0.00 4.40
5084 5373 3.624861 ACAAACTTCAGAACAGAGCACAG 59.375 43.478 0.00 0.00 0.00 3.66
5085 5374 3.609853 ACAAACTTCAGAACAGAGCACA 58.390 40.909 0.00 0.00 0.00 4.57
5127 5416 2.638556 TCAGTAGCTTTCGAGCAGAC 57.361 50.000 0.00 0.00 37.25 3.51
5187 5478 1.062258 CGCACGCAATTCAAATGCTT 58.938 45.000 0.00 0.00 41.64 3.91
5188 5479 1.346378 GCGCACGCAATTCAAATGCT 61.346 50.000 10.65 0.00 41.64 3.79
5191 5482 0.179166 ATCGCGCACGCAATTCAAAT 60.179 45.000 16.04 0.00 42.06 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.