Multiple sequence alignment - TraesCS3B01G088400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G088400 chr3B 100.000 5383 0 0 1 5383 56456846 56451464 0.000000e+00 9941.0
1 TraesCS3B01G088400 chr3B 88.401 1707 134 42 2733 4390 495103261 495104952 0.000000e+00 1997.0
2 TraesCS3B01G088400 chr3B 93.045 762 31 8 4643 5383 617428178 617427418 0.000000e+00 1094.0
3 TraesCS3B01G088400 chr3B 92.781 748 45 7 4642 5383 816527536 816526792 0.000000e+00 1074.0
4 TraesCS3B01G088400 chr3B 89.204 741 49 14 4639 5375 771351305 771352018 0.000000e+00 896.0
5 TraesCS3B01G088400 chr3B 86.924 673 51 18 4642 5300 812568884 812568235 0.000000e+00 721.0
6 TraesCS3B01G088400 chr3B 80.851 376 34 16 1160 1507 495101936 495102301 1.490000e-65 261.0
7 TraesCS3B01G088400 chr3B 100.000 32 0 0 884 915 495101578 495101609 5.820000e-05 60.2
8 TraesCS3B01G088400 chr3A 93.665 1468 69 10 2057 3508 46459583 46458124 0.000000e+00 2174.0
9 TraesCS3B01G088400 chr3A 88.520 1716 115 55 2733 4385 503705062 503706758 0.000000e+00 2002.0
10 TraesCS3B01G088400 chr3A 92.668 1132 57 8 880 1991 46460977 46459852 0.000000e+00 1607.0
11 TraesCS3B01G088400 chr3A 91.087 1021 45 25 3527 4537 46457910 46456926 0.000000e+00 1339.0
12 TraesCS3B01G088400 chr3A 90.768 899 45 20 3527 4408 46212500 46211623 0.000000e+00 1166.0
13 TraesCS3B01G088400 chr3A 93.130 786 54 0 2721 3506 46213513 46212728 0.000000e+00 1153.0
14 TraesCS3B01G088400 chr3A 84.764 827 69 31 733 1511 46215367 46214550 0.000000e+00 776.0
15 TraesCS3B01G088400 chr3A 88.968 562 16 14 1 516 46509896 46509335 0.000000e+00 652.0
16 TraesCS3B01G088400 chr3A 90.278 288 26 2 1732 2017 46214312 46214025 5.090000e-100 375.0
17 TraesCS3B01G088400 chr3A 95.089 224 11 0 653 876 46461775 46461552 2.390000e-93 353.0
18 TraesCS3B01G088400 chr3A 95.283 212 10 0 1502 1713 46214510 46214299 2.400000e-88 337.0
19 TraesCS3B01G088400 chr3A 82.514 366 38 15 1160 1507 503703748 503704105 1.130000e-76 298.0
20 TraesCS3B01G088400 chr3A 92.899 169 10 1 2533 2699 46213666 46213498 1.500000e-60 244.0
21 TraesCS3B01G088400 chr3A 83.396 265 27 6 2033 2284 46214053 46213793 4.190000e-56 230.0
22 TraesCS3B01G088400 chr3A 96.350 137 5 0 2454 2590 46213802 46213666 5.420000e-55 226.0
23 TraesCS3B01G088400 chr3A 84.000 200 12 12 662 859 46516132 46515951 1.990000e-39 174.0
24 TraesCS3B01G088400 chr3A 76.033 242 19 17 695 915 503703190 503703413 7.430000e-14 89.8
25 TraesCS3B01G088400 chr3D 88.297 1709 134 38 2733 4390 379488340 379490033 0.000000e+00 1988.0
26 TraesCS3B01G088400 chr3D 92.237 438 18 4 13 449 33680096 33679674 1.660000e-169 606.0
27 TraesCS3B01G088400 chr3D 81.572 369 41 14 1160 1507 379487033 379487395 4.110000e-71 279.0
28 TraesCS3B01G088400 chr3D 82.500 200 16 11 662 859 33906273 33906091 2.010000e-34 158.0
29 TraesCS3B01G088400 chr6B 93.725 749 41 4 4640 5383 619729764 619730511 0.000000e+00 1118.0
30 TraesCS3B01G088400 chr6B 92.308 767 32 11 4642 5383 31585460 31584696 0.000000e+00 1064.0
31 TraesCS3B01G088400 chr5B 93.775 739 30 8 4642 5379 417804471 417803748 0.000000e+00 1096.0
32 TraesCS3B01G088400 chr5B 93.278 729 29 6 4638 5363 339093517 339094228 0.000000e+00 1057.0
33 TraesCS3B01G088400 chr5B 89.276 373 25 8 4640 5009 394756836 394757196 2.290000e-123 453.0
34 TraesCS3B01G088400 chr1B 92.369 747 45 10 4640 5379 674470634 674469893 0.000000e+00 1053.0
35 TraesCS3B01G088400 chr7B 91.744 751 31 15 4658 5383 400639850 400640594 0.000000e+00 1014.0
36 TraesCS3B01G088400 chr7B 92.970 697 31 2 4640 5336 508656371 508655693 0.000000e+00 1000.0
37 TraesCS3B01G088400 chr7B 92.969 256 18 0 4642 4897 110697313 110697058 1.830000e-99 374.0
38 TraesCS3B01G088400 chr7B 90.000 140 14 0 4642 4781 43568650 43568511 1.190000e-41 182.0
39 TraesCS3B01G088400 chr4B 91.610 739 54 6 4638 5372 86058241 86057507 0.000000e+00 1014.0
40 TraesCS3B01G088400 chr4B 91.082 684 46 10 4640 5322 66111015 66110346 0.000000e+00 911.0
41 TraesCS3B01G088400 chr2B 91.622 740 48 8 4642 5373 477576108 477576841 0.000000e+00 1011.0
42 TraesCS3B01G088400 chr2A 74.463 791 157 41 2732 3495 33175425 33176197 3.150000e-77 300.0
43 TraesCS3B01G088400 chr2A 84.175 297 47 0 3863 4159 33176543 33176839 6.820000e-74 289.0
44 TraesCS3B01G088400 chrUn 77.193 228 35 11 2187 2404 100239245 100239465 3.410000e-22 117.0
45 TraesCS3B01G088400 chr5D 88.095 84 4 4 2324 2401 496980093 496980176 1.600000e-15 95.3
46 TraesCS3B01G088400 chr7D 100.000 39 0 0 2369 2407 540510060 540510022 7.480000e-09 73.1
47 TraesCS3B01G088400 chr7D 100.000 28 0 0 2373 2400 22787671 22787698 1.000000e-02 52.8
48 TraesCS3B01G088400 chr4D 82.432 74 11 1 445 516 37539789 37539716 4.500000e-06 63.9
49 TraesCS3B01G088400 chr1D 100.000 28 0 0 489 516 398474036 398474063 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G088400 chr3B 56451464 56456846 5382 True 9941.000000 9941 100.000000 1 5383 1 chr3B.!!$R1 5382
1 TraesCS3B01G088400 chr3B 617427418 617428178 760 True 1094.000000 1094 93.045000 4643 5383 1 chr3B.!!$R2 740
2 TraesCS3B01G088400 chr3B 816526792 816527536 744 True 1074.000000 1074 92.781000 4642 5383 1 chr3B.!!$R4 741
3 TraesCS3B01G088400 chr3B 771351305 771352018 713 False 896.000000 896 89.204000 4639 5375 1 chr3B.!!$F1 736
4 TraesCS3B01G088400 chr3B 495101578 495104952 3374 False 772.733333 1997 89.750667 884 4390 3 chr3B.!!$F2 3506
5 TraesCS3B01G088400 chr3B 812568235 812568884 649 True 721.000000 721 86.924000 4642 5300 1 chr3B.!!$R3 658
6 TraesCS3B01G088400 chr3A 46456926 46461775 4849 True 1368.250000 2174 93.127250 653 4537 4 chr3A.!!$R4 3884
7 TraesCS3B01G088400 chr3A 503703190 503706758 3568 False 796.600000 2002 82.355667 695 4385 3 chr3A.!!$F1 3690
8 TraesCS3B01G088400 chr3A 46509335 46509896 561 True 652.000000 652 88.968000 1 516 1 chr3A.!!$R1 515
9 TraesCS3B01G088400 chr3A 46211623 46215367 3744 True 563.375000 1166 90.858500 733 4408 8 chr3A.!!$R3 3675
10 TraesCS3B01G088400 chr3D 379487033 379490033 3000 False 1133.500000 1988 84.934500 1160 4390 2 chr3D.!!$F1 3230
11 TraesCS3B01G088400 chr6B 619729764 619730511 747 False 1118.000000 1118 93.725000 4640 5383 1 chr6B.!!$F1 743
12 TraesCS3B01G088400 chr6B 31584696 31585460 764 True 1064.000000 1064 92.308000 4642 5383 1 chr6B.!!$R1 741
13 TraesCS3B01G088400 chr5B 417803748 417804471 723 True 1096.000000 1096 93.775000 4642 5379 1 chr5B.!!$R1 737
14 TraesCS3B01G088400 chr5B 339093517 339094228 711 False 1057.000000 1057 93.278000 4638 5363 1 chr5B.!!$F1 725
15 TraesCS3B01G088400 chr1B 674469893 674470634 741 True 1053.000000 1053 92.369000 4640 5379 1 chr1B.!!$R1 739
16 TraesCS3B01G088400 chr7B 400639850 400640594 744 False 1014.000000 1014 91.744000 4658 5383 1 chr7B.!!$F1 725
17 TraesCS3B01G088400 chr7B 508655693 508656371 678 True 1000.000000 1000 92.970000 4640 5336 1 chr7B.!!$R3 696
18 TraesCS3B01G088400 chr4B 86057507 86058241 734 True 1014.000000 1014 91.610000 4638 5372 1 chr4B.!!$R2 734
19 TraesCS3B01G088400 chr4B 66110346 66111015 669 True 911.000000 911 91.082000 4640 5322 1 chr4B.!!$R1 682
20 TraesCS3B01G088400 chr2B 477576108 477576841 733 False 1011.000000 1011 91.622000 4642 5373 1 chr2B.!!$F1 731
21 TraesCS3B01G088400 chr2A 33175425 33176839 1414 False 294.500000 300 79.319000 2732 4159 2 chr2A.!!$F1 1427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 717 1.064060 GAGCACATAAATGTCCACGGC 59.936 52.381 0.0 0.0 39.39 5.68 F
1023 1712 1.211212 CCTGCCACCATCTCATCTTCA 59.789 52.381 0.0 0.0 0.00 3.02 F
1995 3148 1.152673 GGATGGAGTCAATGCCCCC 60.153 63.158 0.0 0.0 0.00 5.40 F
2484 3854 0.467804 AAAATGTGGGTTGGTGGTGC 59.532 50.000 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 2795 0.836400 TTGCCTCCTTCCTCCTTCGT 60.836 55.0 0.0 0.0 0.00 3.85 R
2047 3200 0.889186 ATTTCTGGTGTCGTGGTGGC 60.889 55.0 0.0 0.0 0.00 5.01 R
3191 4668 0.607217 TCAGCGTCCAGAACTCGGTA 60.607 55.0 0.0 0.0 34.09 4.02 R
4424 6234 0.249120 TATGCGACCACAGACCTTGG 59.751 55.0 0.0 0.0 40.32 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 6.350629 ACTCCAGTTTGTTAGTTACGGTAT 57.649 37.500 0.00 0.00 0.00 2.73
120 121 7.332678 AGTTTGTTAGTTACGGTATGTCCAATC 59.667 37.037 0.00 0.00 35.57 2.67
122 123 5.187381 TGTTAGTTACGGTATGTCCAATCCA 59.813 40.000 0.00 0.00 35.57 3.41
123 124 4.829872 AGTTACGGTATGTCCAATCCAA 57.170 40.909 0.00 0.00 35.57 3.53
126 127 6.285990 AGTTACGGTATGTCCAATCCAATAC 58.714 40.000 0.00 0.00 35.57 1.89
127 128 6.099269 AGTTACGGTATGTCCAATCCAATACT 59.901 38.462 0.00 0.00 35.57 2.12
129 130 4.654262 ACGGTATGTCCAATCCAATACTCT 59.346 41.667 0.00 0.00 35.57 3.24
217 239 7.771361 TGTTTTGGAATATGTAATTAGCTCCGA 59.229 33.333 0.00 0.00 0.00 4.55
238 260 2.427232 TGCGTGACAAGTAGGTGTAC 57.573 50.000 0.00 0.00 0.00 2.90
440 487 4.743151 CGTGGACACTTATATGTACGCATT 59.257 41.667 2.86 0.00 43.04 3.56
456 503 8.133754 TGTACGCATTAATCCTATAAACACAC 57.866 34.615 0.00 0.00 0.00 3.82
463 510 5.545658 AATCCTATAAACACACACAAGCG 57.454 39.130 0.00 0.00 0.00 4.68
512 559 2.099592 ACTGTGCCGGCATATCATTTTG 59.900 45.455 35.23 18.22 0.00 2.44
516 563 2.618241 TGCCGGCATATCATTTTGAGAC 59.382 45.455 29.03 0.00 0.00 3.36
517 564 2.880890 GCCGGCATATCATTTTGAGACT 59.119 45.455 24.80 0.00 0.00 3.24
518 565 4.065088 GCCGGCATATCATTTTGAGACTA 58.935 43.478 24.80 0.00 0.00 2.59
519 566 4.515191 GCCGGCATATCATTTTGAGACTAA 59.485 41.667 24.80 0.00 0.00 2.24
520 567 5.008613 GCCGGCATATCATTTTGAGACTAAA 59.991 40.000 24.80 0.00 0.00 1.85
521 568 6.459573 GCCGGCATATCATTTTGAGACTAAAA 60.460 38.462 24.80 0.00 34.39 1.52
522 569 7.651808 CCGGCATATCATTTTGAGACTAAAAT 58.348 34.615 0.00 0.00 40.00 1.82
537 584 7.554959 AGACTAAAATGTCTCCTTCCACTAA 57.445 36.000 0.00 0.00 43.04 2.24
538 585 7.974504 AGACTAAAATGTCTCCTTCCACTAAA 58.025 34.615 0.00 0.00 43.04 1.85
539 586 7.878644 AGACTAAAATGTCTCCTTCCACTAAAC 59.121 37.037 0.00 0.00 43.04 2.01
540 587 7.514721 ACTAAAATGTCTCCTTCCACTAAACA 58.485 34.615 0.00 0.00 0.00 2.83
541 588 7.996644 ACTAAAATGTCTCCTTCCACTAAACAA 59.003 33.333 0.00 0.00 0.00 2.83
542 589 7.654022 AAAATGTCTCCTTCCACTAAACAAA 57.346 32.000 0.00 0.00 0.00 2.83
543 590 6.635030 AATGTCTCCTTCCACTAAACAAAC 57.365 37.500 0.00 0.00 0.00 2.93
544 591 5.105567 TGTCTCCTTCCACTAAACAAACA 57.894 39.130 0.00 0.00 0.00 2.83
545 592 5.690865 TGTCTCCTTCCACTAAACAAACAT 58.309 37.500 0.00 0.00 0.00 2.71
546 593 5.763204 TGTCTCCTTCCACTAAACAAACATC 59.237 40.000 0.00 0.00 0.00 3.06
547 594 5.763204 GTCTCCTTCCACTAAACAAACATCA 59.237 40.000 0.00 0.00 0.00 3.07
548 595 6.431234 GTCTCCTTCCACTAAACAAACATCAT 59.569 38.462 0.00 0.00 0.00 2.45
549 596 7.004086 TCTCCTTCCACTAAACAAACATCATT 58.996 34.615 0.00 0.00 0.00 2.57
550 597 8.160765 TCTCCTTCCACTAAACAAACATCATTA 58.839 33.333 0.00 0.00 0.00 1.90
551 598 8.698973 TCCTTCCACTAAACAAACATCATTAA 57.301 30.769 0.00 0.00 0.00 1.40
552 599 9.137459 TCCTTCCACTAAACAAACATCATTAAA 57.863 29.630 0.00 0.00 0.00 1.52
553 600 9.757227 CCTTCCACTAAACAAACATCATTAAAA 57.243 29.630 0.00 0.00 0.00 1.52
582 629 6.421377 AAATAAATTCAGAAAAATGCGGGC 57.579 33.333 0.00 0.00 0.00 6.13
583 630 3.399440 AAATTCAGAAAAATGCGGGCA 57.601 38.095 0.00 0.00 0.00 5.36
584 631 3.615224 AATTCAGAAAAATGCGGGCAT 57.385 38.095 0.00 0.00 38.46 4.40
585 632 2.652941 TTCAGAAAAATGCGGGCATC 57.347 45.000 6.61 0.00 35.31 3.91
586 633 1.543607 TCAGAAAAATGCGGGCATCA 58.456 45.000 6.61 0.00 35.31 3.07
587 634 2.101783 TCAGAAAAATGCGGGCATCAT 58.898 42.857 6.61 0.00 35.31 2.45
588 635 2.496871 TCAGAAAAATGCGGGCATCATT 59.503 40.909 6.61 5.22 35.31 2.57
589 636 2.605818 CAGAAAAATGCGGGCATCATTG 59.394 45.455 6.61 0.00 35.31 2.82
603 650 5.511234 GCATCATTGCCAAGTCTAAATCT 57.489 39.130 0.00 0.00 43.38 2.40
604 651 5.899299 GCATCATTGCCAAGTCTAAATCTT 58.101 37.500 0.00 0.00 43.38 2.40
605 652 7.031226 GCATCATTGCCAAGTCTAAATCTTA 57.969 36.000 0.00 0.00 43.38 2.10
606 653 7.483307 GCATCATTGCCAAGTCTAAATCTTAA 58.517 34.615 0.00 0.00 43.38 1.85
607 654 7.975616 GCATCATTGCCAAGTCTAAATCTTAAA 59.024 33.333 0.00 0.00 43.38 1.52
608 655 9.294030 CATCATTGCCAAGTCTAAATCTTAAAC 57.706 33.333 0.00 0.00 0.00 2.01
609 656 7.826690 TCATTGCCAAGTCTAAATCTTAAACC 58.173 34.615 0.00 0.00 0.00 3.27
610 657 6.584185 TTGCCAAGTCTAAATCTTAAACCC 57.416 37.500 0.00 0.00 0.00 4.11
611 658 5.887754 TGCCAAGTCTAAATCTTAAACCCT 58.112 37.500 0.00 0.00 0.00 4.34
612 659 5.710099 TGCCAAGTCTAAATCTTAAACCCTG 59.290 40.000 0.00 0.00 0.00 4.45
613 660 5.944007 GCCAAGTCTAAATCTTAAACCCTGA 59.056 40.000 0.00 0.00 0.00 3.86
614 661 6.127980 GCCAAGTCTAAATCTTAAACCCTGAC 60.128 42.308 0.00 0.00 0.00 3.51
615 662 6.092259 CCAAGTCTAAATCTTAAACCCTGACG 59.908 42.308 0.00 0.00 0.00 4.35
616 663 6.600882 AGTCTAAATCTTAAACCCTGACGA 57.399 37.500 0.00 0.00 0.00 4.20
617 664 6.631962 AGTCTAAATCTTAAACCCTGACGAG 58.368 40.000 0.00 0.00 0.00 4.18
618 665 6.210984 AGTCTAAATCTTAAACCCTGACGAGT 59.789 38.462 0.00 0.00 0.00 4.18
619 666 6.872547 GTCTAAATCTTAAACCCTGACGAGTT 59.127 38.462 0.00 0.00 0.00 3.01
620 667 5.941948 AAATCTTAAACCCTGACGAGTTG 57.058 39.130 0.00 0.00 0.00 3.16
621 668 3.396260 TCTTAAACCCTGACGAGTTGG 57.604 47.619 0.00 0.00 0.00 3.77
622 669 2.701951 TCTTAAACCCTGACGAGTTGGT 59.298 45.455 0.00 0.00 0.00 3.67
623 670 3.135167 TCTTAAACCCTGACGAGTTGGTT 59.865 43.478 0.00 0.00 42.73 3.67
624 671 1.963172 AAACCCTGACGAGTTGGTTC 58.037 50.000 0.00 0.00 40.10 3.62
625 672 1.129058 AACCCTGACGAGTTGGTTCT 58.871 50.000 0.00 0.00 36.36 3.01
626 673 2.005370 ACCCTGACGAGTTGGTTCTA 57.995 50.000 0.00 0.00 0.00 2.10
627 674 1.893801 ACCCTGACGAGTTGGTTCTAG 59.106 52.381 0.00 0.00 0.00 2.43
628 675 1.893801 CCCTGACGAGTTGGTTCTAGT 59.106 52.381 0.00 0.00 0.00 2.57
629 676 3.087031 CCCTGACGAGTTGGTTCTAGTA 58.913 50.000 0.00 0.00 0.00 1.82
630 677 3.119566 CCCTGACGAGTTGGTTCTAGTAC 60.120 52.174 0.00 0.00 0.00 2.73
631 678 3.504906 CCTGACGAGTTGGTTCTAGTACA 59.495 47.826 1.69 0.00 0.00 2.90
632 679 4.022589 CCTGACGAGTTGGTTCTAGTACAA 60.023 45.833 1.69 0.00 0.00 2.41
633 680 5.508489 CCTGACGAGTTGGTTCTAGTACAAA 60.508 44.000 1.69 0.00 0.00 2.83
634 681 5.904941 TGACGAGTTGGTTCTAGTACAAAA 58.095 37.500 1.69 0.00 0.00 2.44
635 682 5.981315 TGACGAGTTGGTTCTAGTACAAAAG 59.019 40.000 1.69 0.00 0.00 2.27
636 683 6.152932 ACGAGTTGGTTCTAGTACAAAAGA 57.847 37.500 1.69 0.00 0.00 2.52
637 684 6.576185 ACGAGTTGGTTCTAGTACAAAAGAA 58.424 36.000 1.69 0.00 0.00 2.52
638 685 7.043565 ACGAGTTGGTTCTAGTACAAAAGAAA 58.956 34.615 1.69 0.00 33.70 2.52
639 686 7.010830 ACGAGTTGGTTCTAGTACAAAAGAAAC 59.989 37.037 11.64 11.64 39.42 2.78
640 687 7.517893 CGAGTTGGTTCTAGTACAAAAGAAACC 60.518 40.741 14.46 13.22 38.42 3.27
641 688 7.344134 AGTTGGTTCTAGTACAAAAGAAACCT 58.656 34.615 14.46 6.15 38.42 3.50
642 689 8.488668 AGTTGGTTCTAGTACAAAAGAAACCTA 58.511 33.333 14.46 9.38 38.42 3.08
643 690 9.112725 GTTGGTTCTAGTACAAAAGAAACCTAA 57.887 33.333 14.46 4.69 38.42 2.69
644 691 8.667076 TGGTTCTAGTACAAAAGAAACCTAAC 57.333 34.615 14.46 1.92 38.42 2.34
645 692 7.716560 TGGTTCTAGTACAAAAGAAACCTAACC 59.283 37.037 14.46 8.98 38.42 2.85
646 693 7.716560 GGTTCTAGTACAAAAGAAACCTAACCA 59.283 37.037 8.67 0.00 34.06 3.67
647 694 9.281371 GTTCTAGTACAAAAGAAACCTAACCAT 57.719 33.333 6.84 0.00 33.70 3.55
648 695 9.498176 TTCTAGTACAAAAGAAACCTAACCATC 57.502 33.333 0.00 0.00 0.00 3.51
649 696 8.877195 TCTAGTACAAAAGAAACCTAACCATCT 58.123 33.333 0.00 0.00 0.00 2.90
650 697 7.745620 AGTACAAAAGAAACCTAACCATCTG 57.254 36.000 0.00 0.00 0.00 2.90
651 698 7.514721 AGTACAAAAGAAACCTAACCATCTGA 58.485 34.615 0.00 0.00 0.00 3.27
655 702 3.944087 AGAAACCTAACCATCTGAGCAC 58.056 45.455 0.00 0.00 0.00 4.40
665 712 4.202441 ACCATCTGAGCACATAAATGTCC 58.798 43.478 0.00 0.00 39.39 4.02
670 717 1.064060 GAGCACATAAATGTCCACGGC 59.936 52.381 0.00 0.00 39.39 5.68
968 1640 2.669569 CACTTGGGTGGCGGACTG 60.670 66.667 0.00 0.00 39.59 3.51
988 1677 4.523943 ACTGCATCTTGCTAGATCCTAGAG 59.476 45.833 7.75 3.08 45.31 2.43
1006 1695 1.802960 GAGAATACATCGCCATGCCTG 59.197 52.381 0.00 0.00 32.57 4.85
1023 1712 1.211212 CCTGCCACCATCTCATCTTCA 59.789 52.381 0.00 0.00 0.00 3.02
1282 2046 9.503427 GTTAATGGATTACTTGCACAAATCTAC 57.497 33.333 12.23 1.69 31.66 2.59
1362 2168 6.618811 ACTACTGACATACTAACCTCAAACG 58.381 40.000 0.00 0.00 0.00 3.60
1374 2180 4.255833 ACCTCAAACGTCCGTTTATACA 57.744 40.909 16.45 2.37 45.32 2.29
1427 2233 2.226437 TGCGTTTTCTCTTGGAGAATGC 59.774 45.455 10.23 13.61 46.20 3.56
1561 2423 6.971602 TGCGTAACACATTCTTTCCATTAAA 58.028 32.000 0.00 0.00 0.00 1.52
1635 2497 4.384208 GGCAACACCAAGTATCCATACTCT 60.384 45.833 0.00 0.00 42.47 3.24
1636 2498 5.186198 GCAACACCAAGTATCCATACTCTT 58.814 41.667 0.00 0.00 42.47 2.85
1720 2672 6.887376 TCAACTAACAGTCTAATGATTCGC 57.113 37.500 0.00 0.00 0.00 4.70
1769 2735 3.776417 AGGACGGGTAGCCAACTTTTATA 59.224 43.478 12.31 0.00 0.00 0.98
1814 2787 1.933853 AGCGCATCCAATTTAGTCGAC 59.066 47.619 11.47 7.70 0.00 4.20
1818 2791 3.555547 CGCATCCAATTTAGTCGACATCA 59.444 43.478 19.50 0.12 0.00 3.07
1822 2795 6.622679 GCATCCAATTTAGTCGACATCAACAA 60.623 38.462 19.50 1.11 0.00 2.83
1887 3036 5.118510 AGTTTTGTTGTTTCTCGCAACTTTG 59.881 36.000 9.16 0.00 44.54 2.77
1906 3059 8.930760 CAACTTTGTTTTGGATGAAACTTGTTA 58.069 29.630 2.68 0.00 39.62 2.41
1971 3124 3.733443 ATGAGCACCAAGTTTTGAACC 57.267 42.857 0.00 0.00 0.00 3.62
1979 3132 2.383855 CAAGTTTTGAACCCTGGTGGA 58.616 47.619 0.00 0.00 38.00 4.02
1995 3148 1.152673 GGATGGAGTCAATGCCCCC 60.153 63.158 0.00 0.00 0.00 5.40
2033 3186 4.060667 CCCCACCCCCATCCACAC 62.061 72.222 0.00 0.00 0.00 3.82
2034 3187 4.060667 CCCACCCCCATCCACACC 62.061 72.222 0.00 0.00 0.00 4.16
2035 3188 4.060667 CCACCCCCATCCACACCC 62.061 72.222 0.00 0.00 0.00 4.61
2036 3189 2.941025 CACCCCCATCCACACCCT 60.941 66.667 0.00 0.00 0.00 4.34
2047 3200 1.896660 CACACCCTCCAACCCAACG 60.897 63.158 0.00 0.00 0.00 4.10
2050 3203 4.278513 CCCTCCAACCCAACGCCA 62.279 66.667 0.00 0.00 0.00 5.69
2117 3473 8.517062 ACAGGGAATAGAGAATGAAAAAGATG 57.483 34.615 0.00 0.00 0.00 2.90
2148 3504 7.823745 ACACAGAGGAACACAAGATTTTAAT 57.176 32.000 0.00 0.00 0.00 1.40
2150 3506 7.086376 CACAGAGGAACACAAGATTTTAATGG 58.914 38.462 0.00 0.00 0.00 3.16
2177 3546 3.597728 GGGGAAAAACCACGCGCA 61.598 61.111 5.73 0.00 41.20 6.09
2205 3574 5.601662 AGCTAGCGAAACTTTGCTATATCA 58.398 37.500 9.55 0.00 46.18 2.15
2216 3585 7.676683 ACTTTGCTATATCAGGAGAGGTTAA 57.323 36.000 0.00 0.00 31.77 2.01
2220 3589 9.920946 TTTGCTATATCAGGAGAGGTTAAAAAT 57.079 29.630 0.00 0.00 0.00 1.82
2264 3633 1.754380 TATCCCGTGCGGCAGCTTAT 61.754 55.000 10.92 0.00 45.42 1.73
2299 3668 2.762535 AGTAATGGTGACCCAAGTCG 57.237 50.000 0.00 0.00 46.04 4.18
2308 3677 3.139077 GTGACCCAAGTCGAAACTGATT 58.861 45.455 0.00 0.00 46.74 2.57
2313 3682 5.745227 ACCCAAGTCGAAACTGATTCATAT 58.255 37.500 0.00 0.00 37.96 1.78
2385 3754 4.202223 CCGCTCAAGTTAGCCTTTATAGGA 60.202 45.833 3.01 0.00 45.05 2.94
2443 3812 1.275856 TGCCAATTTCTTGCCCACATC 59.724 47.619 0.00 0.00 0.00 3.06
2484 3854 0.467804 AAAATGTGGGTTGGTGGTGC 59.532 50.000 0.00 0.00 0.00 5.01
2605 4034 1.617322 CAATCATCAGCCCATGGAGG 58.383 55.000 15.22 1.71 37.03 4.30
2695 4124 4.700692 TGATCGGGTAGTATATGCACTCTC 59.299 45.833 0.00 0.00 0.00 3.20
2697 4126 4.325119 TCGGGTAGTATATGCACTCTCTC 58.675 47.826 0.00 0.00 0.00 3.20
2699 4128 4.393680 CGGGTAGTATATGCACTCTCTCTC 59.606 50.000 0.00 0.00 0.00 3.20
2701 4130 5.646360 GGGTAGTATATGCACTCTCTCTCTC 59.354 48.000 0.00 0.00 0.00 3.20
2703 4132 6.594159 GGTAGTATATGCACTCTCTCTCTCTC 59.406 46.154 0.00 0.00 0.00 3.20
2704 4133 6.439636 AGTATATGCACTCTCTCTCTCTCT 57.560 41.667 0.00 0.00 0.00 3.10
2705 4134 6.841601 AGTATATGCACTCTCTCTCTCTCTT 58.158 40.000 0.00 0.00 0.00 2.85
2706 4135 7.290061 AGTATATGCACTCTCTCTCTCTCTTT 58.710 38.462 0.00 0.00 0.00 2.52
2707 4136 7.779798 AGTATATGCACTCTCTCTCTCTCTTTT 59.220 37.037 0.00 0.00 0.00 2.27
2708 4137 5.743636 ATGCACTCTCTCTCTCTCTTTTT 57.256 39.130 0.00 0.00 0.00 1.94
2709 4138 4.880759 TGCACTCTCTCTCTCTCTTTTTG 58.119 43.478 0.00 0.00 0.00 2.44
2710 4139 4.343526 TGCACTCTCTCTCTCTCTTTTTGT 59.656 41.667 0.00 0.00 0.00 2.83
2711 4140 5.163364 TGCACTCTCTCTCTCTCTTTTTGTT 60.163 40.000 0.00 0.00 0.00 2.83
3095 4566 3.495729 ACCGTCAAGGGCTCCATT 58.504 55.556 0.00 0.00 46.96 3.16
3422 4899 4.530857 GAGCCCACGCCGCTGTAT 62.531 66.667 0.00 0.00 36.48 2.29
3525 5211 1.131771 CTACGATCGATGCATGCGTT 58.868 50.000 24.34 2.76 36.51 4.84
3526 5212 1.522676 CTACGATCGATGCATGCGTTT 59.477 47.619 24.34 0.00 36.51 3.60
3527 5213 1.566404 ACGATCGATGCATGCGTTTA 58.434 45.000 24.34 5.72 0.00 2.01
3528 5214 1.522676 ACGATCGATGCATGCGTTTAG 59.477 47.619 24.34 9.06 0.00 1.85
3541 5242 0.564767 CGTTTAGCCGTTCGATCGAC 59.435 55.000 19.26 12.08 0.00 4.20
3544 5245 2.642139 TTAGCCGTTCGATCGACTTT 57.358 45.000 19.26 4.75 0.00 2.66
3556 5257 5.716094 TCGATCGACTTTGGTTTCTGATAA 58.284 37.500 15.15 0.00 0.00 1.75
3730 5444 2.232941 GACAACCTCCGTCTCCACAATA 59.767 50.000 0.00 0.00 0.00 1.90
3786 5508 0.649475 CCAGGTACTACGACGAGACG 59.351 60.000 0.00 0.00 36.02 4.18
3814 5536 2.603135 CTACCAGAACGTACGCCCCG 62.603 65.000 16.72 1.53 0.00 5.73
3815 5537 4.807039 CCAGAACGTACGCCCCGG 62.807 72.222 16.72 7.60 0.00 5.73
4179 5958 6.094719 ACGGTTAGTTCCTTGTTTGTTTTTC 58.905 36.000 0.00 0.00 0.00 2.29
4183 5962 9.642327 GGTTAGTTCCTTGTTTGTTTTTCTTTA 57.358 29.630 0.00 0.00 0.00 1.85
4196 6003 0.462789 TTCTTTATCCTCCCGTCGCC 59.537 55.000 0.00 0.00 0.00 5.54
4199 6006 0.834612 TTTATCCTCCCGTCGCCATT 59.165 50.000 0.00 0.00 0.00 3.16
4200 6007 0.391597 TTATCCTCCCGTCGCCATTC 59.608 55.000 0.00 0.00 0.00 2.67
4201 6008 0.757561 TATCCTCCCGTCGCCATTCA 60.758 55.000 0.00 0.00 0.00 2.57
4202 6009 2.311688 ATCCTCCCGTCGCCATTCAC 62.312 60.000 0.00 0.00 0.00 3.18
4203 6010 2.579201 CTCCCGTCGCCATTCACT 59.421 61.111 0.00 0.00 0.00 3.41
4204 6011 1.811266 CTCCCGTCGCCATTCACTG 60.811 63.158 0.00 0.00 0.00 3.66
4205 6012 2.225791 CTCCCGTCGCCATTCACTGA 62.226 60.000 0.00 0.00 0.00 3.41
4207 6014 0.104120 CCCGTCGCCATTCACTGATA 59.896 55.000 0.00 0.00 0.00 2.15
4230 6037 2.498644 TGGGTTGCGGAATTGTGATA 57.501 45.000 0.00 0.00 0.00 2.15
4307 6114 0.181587 TGGACGCCAAGACCTTCAAA 59.818 50.000 0.00 0.00 35.66 2.69
4394 6204 6.538742 CCAGGGACAAGTAACAACATATACAG 59.461 42.308 0.00 0.00 0.00 2.74
4424 6234 1.732259 CAACATACAGGGTCAGCGAAC 59.268 52.381 0.00 0.00 0.00 3.95
4426 6236 0.249120 CATACAGGGTCAGCGAACCA 59.751 55.000 13.82 0.00 42.91 3.67
4428 6238 0.320374 TACAGGGTCAGCGAACCAAG 59.680 55.000 13.82 8.78 42.91 3.61
4432 6242 1.371558 GGTCAGCGAACCAAGGTCT 59.628 57.895 5.75 0.00 39.27 3.85
4445 6257 2.102420 CCAAGGTCTGTGGTCGCATATA 59.898 50.000 0.00 0.00 0.00 0.86
4448 6260 5.337571 CCAAGGTCTGTGGTCGCATATATAT 60.338 44.000 0.00 0.00 0.00 0.86
4466 6278 1.917273 ATGCACGTACGTGTATGTCC 58.083 50.000 39.14 26.16 46.65 4.02
4467 6279 0.883153 TGCACGTACGTGTATGTCCT 59.117 50.000 39.56 6.84 46.90 3.85
4471 6283 3.184986 GCACGTACGTGTATGTCCTTTTT 59.815 43.478 39.56 4.88 46.90 1.94
4520 6335 4.049869 TGTGTCGCTCGTTTTGTGTATAA 58.950 39.130 0.00 0.00 0.00 0.98
4533 6352 7.801783 CGTTTTGTGTATAAGGAAGGAAAAGAC 59.198 37.037 0.00 0.00 0.00 3.01
4546 6365 9.892130 AGGAAGGAAAAGACTATACAAATAGTG 57.108 33.333 2.88 0.00 46.71 2.74
4547 6366 9.886132 GGAAGGAAAAGACTATACAAATAGTGA 57.114 33.333 2.88 0.00 46.71 3.41
4569 6388 8.904834 AGTGATTTATAGACTTATCACAGACGT 58.095 33.333 14.32 0.00 45.78 4.34
4570 6389 8.959058 GTGATTTATAGACTTATCACAGACGTG 58.041 37.037 0.00 0.00 43.87 4.49
4579 6398 3.775065 CACAGACGTGAGATGTCGT 57.225 52.632 0.00 0.00 46.80 4.34
4580 6399 2.894307 CACAGACGTGAGATGTCGTA 57.106 50.000 0.00 0.00 46.80 3.43
4581 6400 3.406728 CACAGACGTGAGATGTCGTAT 57.593 47.619 0.00 0.00 46.80 3.06
4582 6401 4.531659 CACAGACGTGAGATGTCGTATA 57.468 45.455 0.00 0.00 46.80 1.47
4583 6402 4.272480 CACAGACGTGAGATGTCGTATAC 58.728 47.826 0.00 0.00 46.80 1.47
4584 6403 3.001026 ACAGACGTGAGATGTCGTATACG 59.999 47.826 19.23 19.23 39.07 3.06
4585 6404 2.543012 AGACGTGAGATGTCGTATACGG 59.457 50.000 24.18 7.98 39.07 4.02
4586 6405 1.600957 ACGTGAGATGTCGTATACGGG 59.399 52.381 24.18 0.00 38.52 5.28
4587 6406 1.869132 CGTGAGATGTCGTATACGGGA 59.131 52.381 24.18 11.92 40.29 5.14
4588 6407 2.288729 CGTGAGATGTCGTATACGGGAA 59.711 50.000 24.18 11.08 40.29 3.97
4589 6408 3.606384 CGTGAGATGTCGTATACGGGAAG 60.606 52.174 24.18 0.00 40.29 3.46
4590 6409 2.292569 TGAGATGTCGTATACGGGAAGC 59.707 50.000 24.18 12.96 40.29 3.86
4591 6410 1.266175 AGATGTCGTATACGGGAAGCG 59.734 52.381 24.18 0.00 40.29 4.68
4592 6411 1.265095 GATGTCGTATACGGGAAGCGA 59.735 52.381 24.18 0.80 40.29 4.93
4593 6412 1.093972 TGTCGTATACGGGAAGCGAA 58.906 50.000 24.18 0.02 40.29 4.70
4594 6413 1.472082 TGTCGTATACGGGAAGCGAAA 59.528 47.619 24.18 0.00 40.29 3.46
4595 6414 1.848608 GTCGTATACGGGAAGCGAAAC 59.151 52.381 24.18 8.61 40.29 2.78
4596 6415 1.745087 TCGTATACGGGAAGCGAAACT 59.255 47.619 24.18 0.00 40.29 2.66
4597 6416 2.942376 TCGTATACGGGAAGCGAAACTA 59.058 45.455 24.18 0.00 40.29 2.24
4598 6417 3.565482 TCGTATACGGGAAGCGAAACTAT 59.435 43.478 24.18 0.00 40.29 2.12
4599 6418 4.754618 TCGTATACGGGAAGCGAAACTATA 59.245 41.667 24.18 0.00 40.29 1.31
4600 6419 5.084722 CGTATACGGGAAGCGAAACTATAG 58.915 45.833 17.61 0.00 35.37 1.31
4601 6420 2.884894 ACGGGAAGCGAAACTATAGG 57.115 50.000 4.43 0.00 0.00 2.57
4602 6421 1.411612 ACGGGAAGCGAAACTATAGGG 59.588 52.381 4.43 0.00 0.00 3.53
4603 6422 1.684983 CGGGAAGCGAAACTATAGGGA 59.315 52.381 4.43 0.00 0.00 4.20
4604 6423 2.299297 CGGGAAGCGAAACTATAGGGAT 59.701 50.000 4.43 0.00 0.00 3.85
4605 6424 3.614390 CGGGAAGCGAAACTATAGGGATC 60.614 52.174 4.43 0.00 0.00 3.36
4606 6425 3.576648 GGAAGCGAAACTATAGGGATCG 58.423 50.000 15.53 15.53 36.64 3.69
4607 6426 3.576648 GAAGCGAAACTATAGGGATCGG 58.423 50.000 19.14 7.30 34.29 4.18
4608 6427 2.872732 AGCGAAACTATAGGGATCGGA 58.127 47.619 19.14 0.00 34.29 4.55
4609 6428 2.820787 AGCGAAACTATAGGGATCGGAG 59.179 50.000 19.14 0.73 34.29 4.63
4610 6429 2.671632 GCGAAACTATAGGGATCGGAGC 60.672 54.545 19.14 5.74 34.29 4.70
4611 6430 2.414293 CGAAACTATAGGGATCGGAGCG 60.414 54.545 4.43 0.00 0.00 5.03
4612 6431 1.546961 AACTATAGGGATCGGAGCGG 58.453 55.000 4.43 0.00 0.00 5.52
4613 6432 0.323542 ACTATAGGGATCGGAGCGGG 60.324 60.000 4.43 0.00 0.00 6.13
4614 6433 1.668101 CTATAGGGATCGGAGCGGGC 61.668 65.000 0.00 0.00 0.00 6.13
4615 6434 2.435120 TATAGGGATCGGAGCGGGCA 62.435 60.000 0.00 0.00 0.00 5.36
4629 6448 4.545706 GGCACGGCCCGATCATCA 62.546 66.667 11.71 0.00 44.06 3.07
4630 6449 2.969238 GCACGGCCCGATCATCAG 60.969 66.667 11.71 0.00 0.00 2.90
4631 6450 2.501128 CACGGCCCGATCATCAGT 59.499 61.111 11.71 0.00 0.00 3.41
4632 6451 1.884464 CACGGCCCGATCATCAGTG 60.884 63.158 11.71 0.00 0.00 3.66
4633 6452 2.969238 CGGCCCGATCATCAGTGC 60.969 66.667 0.00 0.00 0.00 4.40
4634 6453 2.507944 GGCCCGATCATCAGTGCT 59.492 61.111 0.00 0.00 0.00 4.40
4635 6454 1.596477 GGCCCGATCATCAGTGCTC 60.596 63.158 0.00 0.00 0.00 4.26
4636 6455 1.144716 GCCCGATCATCAGTGCTCA 59.855 57.895 0.00 0.00 0.00 4.26
4667 6486 2.819595 CCAACAGCCGCGCTATGT 60.820 61.111 5.56 4.33 36.40 2.29
4899 6805 4.032960 AGTTCATGCCCACAAGTTCATA 57.967 40.909 0.00 0.00 0.00 2.15
5052 6967 4.774243 TCTTCCTCCCTATCCTCATCAT 57.226 45.455 0.00 0.00 0.00 2.45
5095 7010 1.880027 GACGGTGTTGGCAAGATCTTT 59.120 47.619 4.86 0.00 0.00 2.52
5350 7380 4.770362 TCCCATGGCGGTCGGAGA 62.770 66.667 6.09 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 5.459434 ACTTTGTTTTTGCGGGTAATTAACG 59.541 36.000 6.49 6.49 0.00 3.18
20 21 4.657436 TCACTTTGTTTTTGCGGGTAAT 57.343 36.364 0.00 0.00 0.00 1.89
85 86 6.183360 ACCGTAACTAACAAACTGGAGTACTT 60.183 38.462 0.00 0.00 0.00 2.24
112 113 5.872617 CACGTTTAGAGTATTGGATTGGACA 59.127 40.000 0.00 0.00 0.00 4.02
168 190 3.937814 TGCTCATGTAGTACCTGTTTGG 58.062 45.455 5.61 0.00 42.93 3.28
177 199 7.701539 ATTCCAAAACATTGCTCATGTAGTA 57.298 32.000 2.92 0.00 46.23 1.82
205 227 3.120792 GTCACGCAATCGGAGCTAATTA 58.879 45.455 0.00 0.00 40.69 1.40
217 239 2.543777 ACACCTACTTGTCACGCAAT 57.456 45.000 0.00 0.00 36.36 3.56
238 260 2.621055 TGGACAAAAGGAAATGGACACG 59.379 45.455 0.00 0.00 0.00 4.49
242 264 3.505680 CGATGTGGACAAAAGGAAATGGA 59.494 43.478 0.00 0.00 0.00 3.41
313 335 1.503818 GCCGAAGTTTTCAGCGGACA 61.504 55.000 0.00 0.00 46.29 4.02
440 487 6.167685 ACGCTTGTGTGTGTTTATAGGATTA 58.832 36.000 0.00 0.00 35.34 1.75
456 503 6.090088 GCTCATAAGGATAAGATACGCTTGTG 59.910 42.308 0.00 0.00 37.42 3.33
463 510 7.177568 TCAGAGGTGCTCATAAGGATAAGATAC 59.822 40.741 0.00 0.00 32.06 2.24
516 563 7.979444 TGTTTAGTGGAAGGAGACATTTTAG 57.021 36.000 0.00 0.00 0.00 1.85
517 564 8.626526 GTTTGTTTAGTGGAAGGAGACATTTTA 58.373 33.333 0.00 0.00 0.00 1.52
518 565 7.123547 TGTTTGTTTAGTGGAAGGAGACATTTT 59.876 33.333 0.00 0.00 0.00 1.82
519 566 6.605594 TGTTTGTTTAGTGGAAGGAGACATTT 59.394 34.615 0.00 0.00 0.00 2.32
520 567 6.126409 TGTTTGTTTAGTGGAAGGAGACATT 58.874 36.000 0.00 0.00 0.00 2.71
521 568 5.690865 TGTTTGTTTAGTGGAAGGAGACAT 58.309 37.500 0.00 0.00 0.00 3.06
522 569 5.105567 TGTTTGTTTAGTGGAAGGAGACA 57.894 39.130 0.00 0.00 0.00 3.41
523 570 5.763204 TGATGTTTGTTTAGTGGAAGGAGAC 59.237 40.000 0.00 0.00 0.00 3.36
524 571 5.935945 TGATGTTTGTTTAGTGGAAGGAGA 58.064 37.500 0.00 0.00 0.00 3.71
525 572 6.824305 ATGATGTTTGTTTAGTGGAAGGAG 57.176 37.500 0.00 0.00 0.00 3.69
526 573 8.698973 TTAATGATGTTTGTTTAGTGGAAGGA 57.301 30.769 0.00 0.00 0.00 3.36
527 574 9.757227 TTTTAATGATGTTTGTTTAGTGGAAGG 57.243 29.630 0.00 0.00 0.00 3.46
556 603 8.611757 GCCCGCATTTTTCTGAATTTATTTTAT 58.388 29.630 0.00 0.00 0.00 1.40
557 604 7.604164 TGCCCGCATTTTTCTGAATTTATTTTA 59.396 29.630 0.00 0.00 0.00 1.52
558 605 6.429385 TGCCCGCATTTTTCTGAATTTATTTT 59.571 30.769 0.00 0.00 0.00 1.82
559 606 5.936956 TGCCCGCATTTTTCTGAATTTATTT 59.063 32.000 0.00 0.00 0.00 1.40
560 607 5.486526 TGCCCGCATTTTTCTGAATTTATT 58.513 33.333 0.00 0.00 0.00 1.40
561 608 5.083533 TGCCCGCATTTTTCTGAATTTAT 57.916 34.783 0.00 0.00 0.00 1.40
562 609 4.527509 TGCCCGCATTTTTCTGAATTTA 57.472 36.364 0.00 0.00 0.00 1.40
563 610 3.399440 TGCCCGCATTTTTCTGAATTT 57.601 38.095 0.00 0.00 0.00 1.82
564 611 3.055963 TGATGCCCGCATTTTTCTGAATT 60.056 39.130 3.24 0.00 36.70 2.17
565 612 2.496871 TGATGCCCGCATTTTTCTGAAT 59.503 40.909 3.24 0.00 36.70 2.57
566 613 1.891811 TGATGCCCGCATTTTTCTGAA 59.108 42.857 3.24 0.00 36.70 3.02
567 614 1.543607 TGATGCCCGCATTTTTCTGA 58.456 45.000 3.24 0.00 36.70 3.27
568 615 2.589798 ATGATGCCCGCATTTTTCTG 57.410 45.000 3.24 0.00 36.70 3.02
569 616 2.896168 CAATGATGCCCGCATTTTTCT 58.104 42.857 3.24 0.00 36.70 2.52
582 629 9.294030 GTTTAAGATTTAGACTTGGCAATGATG 57.706 33.333 0.00 0.00 0.00 3.07
583 630 8.470002 GGTTTAAGATTTAGACTTGGCAATGAT 58.530 33.333 0.00 0.00 0.00 2.45
584 631 7.093945 GGGTTTAAGATTTAGACTTGGCAATGA 60.094 37.037 0.00 0.00 0.00 2.57
585 632 7.035612 GGGTTTAAGATTTAGACTTGGCAATG 58.964 38.462 0.00 0.00 0.00 2.82
586 633 6.954102 AGGGTTTAAGATTTAGACTTGGCAAT 59.046 34.615 0.00 0.00 0.00 3.56
587 634 6.208599 CAGGGTTTAAGATTTAGACTTGGCAA 59.791 38.462 0.00 0.00 0.00 4.52
588 635 5.710099 CAGGGTTTAAGATTTAGACTTGGCA 59.290 40.000 0.00 0.00 0.00 4.92
589 636 5.944007 TCAGGGTTTAAGATTTAGACTTGGC 59.056 40.000 0.00 0.00 0.00 4.52
590 637 6.092259 CGTCAGGGTTTAAGATTTAGACTTGG 59.908 42.308 0.00 0.00 0.00 3.61
591 638 6.872020 TCGTCAGGGTTTAAGATTTAGACTTG 59.128 38.462 0.00 0.00 0.00 3.16
592 639 7.001099 TCGTCAGGGTTTAAGATTTAGACTT 57.999 36.000 0.00 0.00 0.00 3.01
593 640 6.210984 ACTCGTCAGGGTTTAAGATTTAGACT 59.789 38.462 0.00 0.00 0.00 3.24
594 641 6.396450 ACTCGTCAGGGTTTAAGATTTAGAC 58.604 40.000 0.00 0.00 0.00 2.59
595 642 6.600882 ACTCGTCAGGGTTTAAGATTTAGA 57.399 37.500 0.00 0.00 0.00 2.10
596 643 6.092259 CCAACTCGTCAGGGTTTAAGATTTAG 59.908 42.308 0.00 0.00 39.47 1.85
597 644 5.935789 CCAACTCGTCAGGGTTTAAGATTTA 59.064 40.000 0.00 0.00 39.47 1.40
598 645 4.760204 CCAACTCGTCAGGGTTTAAGATTT 59.240 41.667 0.00 0.00 39.47 2.17
599 646 4.202430 ACCAACTCGTCAGGGTTTAAGATT 60.202 41.667 0.00 0.00 39.47 2.40
600 647 3.326880 ACCAACTCGTCAGGGTTTAAGAT 59.673 43.478 0.00 0.00 39.47 2.40
601 648 2.701951 ACCAACTCGTCAGGGTTTAAGA 59.298 45.455 0.00 0.00 39.47 2.10
602 649 3.121738 ACCAACTCGTCAGGGTTTAAG 57.878 47.619 0.00 0.00 39.47 1.85
603 650 3.135167 AGAACCAACTCGTCAGGGTTTAA 59.865 43.478 0.00 0.00 43.34 1.52
604 651 2.701951 AGAACCAACTCGTCAGGGTTTA 59.298 45.455 0.00 0.00 43.34 2.01
605 652 1.489230 AGAACCAACTCGTCAGGGTTT 59.511 47.619 0.00 0.00 43.34 3.27
606 653 1.129058 AGAACCAACTCGTCAGGGTT 58.871 50.000 0.00 0.00 45.82 4.11
607 654 1.893801 CTAGAACCAACTCGTCAGGGT 59.106 52.381 0.00 0.00 34.43 4.34
608 655 1.893801 ACTAGAACCAACTCGTCAGGG 59.106 52.381 0.00 0.00 0.00 4.45
609 656 3.504906 TGTACTAGAACCAACTCGTCAGG 59.495 47.826 0.00 0.00 0.00 3.86
610 657 4.761235 TGTACTAGAACCAACTCGTCAG 57.239 45.455 0.00 0.00 0.00 3.51
611 658 5.518848 TTTGTACTAGAACCAACTCGTCA 57.481 39.130 0.00 0.00 0.00 4.35
612 659 6.211515 TCTTTTGTACTAGAACCAACTCGTC 58.788 40.000 0.00 0.00 0.00 4.20
613 660 6.152932 TCTTTTGTACTAGAACCAACTCGT 57.847 37.500 0.00 0.00 0.00 4.18
614 661 7.342942 GTTTCTTTTGTACTAGAACCAACTCG 58.657 38.462 0.00 0.00 30.53 4.18
615 662 7.498239 AGGTTTCTTTTGTACTAGAACCAACTC 59.502 37.037 0.00 6.80 30.53 3.01
616 663 7.344134 AGGTTTCTTTTGTACTAGAACCAACT 58.656 34.615 0.00 7.60 30.53 3.16
617 664 7.563888 AGGTTTCTTTTGTACTAGAACCAAC 57.436 36.000 0.00 9.80 30.53 3.77
618 665 9.112725 GTTAGGTTTCTTTTGTACTAGAACCAA 57.887 33.333 0.00 0.00 30.53 3.67
619 666 7.716560 GGTTAGGTTTCTTTTGTACTAGAACCA 59.283 37.037 0.00 0.00 30.53 3.67
620 667 7.716560 TGGTTAGGTTTCTTTTGTACTAGAACC 59.283 37.037 0.00 0.00 30.53 3.62
621 668 8.667076 TGGTTAGGTTTCTTTTGTACTAGAAC 57.333 34.615 0.00 0.00 30.53 3.01
622 669 9.498176 GATGGTTAGGTTTCTTTTGTACTAGAA 57.502 33.333 0.00 0.00 0.00 2.10
623 670 8.877195 AGATGGTTAGGTTTCTTTTGTACTAGA 58.123 33.333 0.00 0.00 0.00 2.43
624 671 8.936864 CAGATGGTTAGGTTTCTTTTGTACTAG 58.063 37.037 0.00 0.00 0.00 2.57
625 672 8.653191 TCAGATGGTTAGGTTTCTTTTGTACTA 58.347 33.333 0.00 0.00 0.00 1.82
626 673 7.514721 TCAGATGGTTAGGTTTCTTTTGTACT 58.485 34.615 0.00 0.00 0.00 2.73
627 674 7.573283 GCTCAGATGGTTAGGTTTCTTTTGTAC 60.573 40.741 0.00 0.00 0.00 2.90
628 675 6.430000 GCTCAGATGGTTAGGTTTCTTTTGTA 59.570 38.462 0.00 0.00 0.00 2.41
629 676 5.241728 GCTCAGATGGTTAGGTTTCTTTTGT 59.758 40.000 0.00 0.00 0.00 2.83
630 677 5.241506 TGCTCAGATGGTTAGGTTTCTTTTG 59.758 40.000 0.00 0.00 0.00 2.44
631 678 5.241728 GTGCTCAGATGGTTAGGTTTCTTTT 59.758 40.000 0.00 0.00 0.00 2.27
632 679 4.762251 GTGCTCAGATGGTTAGGTTTCTTT 59.238 41.667 0.00 0.00 0.00 2.52
633 680 4.202461 TGTGCTCAGATGGTTAGGTTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
634 681 3.327757 TGTGCTCAGATGGTTAGGTTTCT 59.672 43.478 0.00 0.00 0.00 2.52
635 682 3.674997 TGTGCTCAGATGGTTAGGTTTC 58.325 45.455 0.00 0.00 0.00 2.78
636 683 3.788227 TGTGCTCAGATGGTTAGGTTT 57.212 42.857 0.00 0.00 0.00 3.27
637 684 5.435686 TTATGTGCTCAGATGGTTAGGTT 57.564 39.130 0.00 0.00 0.00 3.50
638 685 5.435686 TTTATGTGCTCAGATGGTTAGGT 57.564 39.130 0.00 0.00 0.00 3.08
639 686 5.824624 ACATTTATGTGCTCAGATGGTTAGG 59.175 40.000 11.67 0.00 40.03 2.69
640 687 6.017605 GGACATTTATGTGCTCAGATGGTTAG 60.018 42.308 7.07 0.00 44.46 2.34
641 688 5.822519 GGACATTTATGTGCTCAGATGGTTA 59.177 40.000 7.07 0.00 44.46 2.85
642 689 4.641989 GGACATTTATGTGCTCAGATGGTT 59.358 41.667 7.07 0.00 44.46 3.67
643 690 4.202441 GGACATTTATGTGCTCAGATGGT 58.798 43.478 7.07 0.32 44.46 3.55
644 691 4.825546 GGACATTTATGTGCTCAGATGG 57.174 45.455 7.07 0.00 44.46 3.51
655 702 0.655733 GTCGGCCGTGGACATTTATG 59.344 55.000 27.15 0.00 34.56 1.90
934 1590 0.387239 GTGCCGTGAACAGATTTGGC 60.387 55.000 0.00 0.00 42.76 4.52
988 1677 0.239347 GCAGGCATGGCGATGTATTC 59.761 55.000 14.30 0.00 31.50 1.75
1006 1695 2.170187 AGAGTGAAGATGAGATGGTGGC 59.830 50.000 0.00 0.00 0.00 5.01
1282 2046 0.314935 AAAACGAAGGCATGCACAGG 59.685 50.000 21.36 8.24 0.00 4.00
1362 2168 2.542595 CCGGCAGATTGTATAAACGGAC 59.457 50.000 0.00 0.00 42.42 4.79
1374 2180 2.351276 GTGGACCACCGGCAGATT 59.649 61.111 14.16 0.00 39.42 2.40
1427 2233 5.697848 ATCGAAGTAACGGAAAAGATTCG 57.302 39.130 0.00 0.00 39.38 3.34
1596 2458 3.449377 TGTTGCCGATCTACACCTTGATA 59.551 43.478 0.00 0.00 0.00 2.15
1607 2469 2.420129 GGATACTTGGTGTTGCCGATCT 60.420 50.000 0.00 0.00 41.21 2.75
1727 2679 5.632764 GTCCTCGGTAGACTGTTAGTTTTTC 59.367 44.000 0.00 0.00 0.00 2.29
1729 2681 4.320788 CGTCCTCGGTAGACTGTTAGTTTT 60.321 45.833 0.00 0.00 31.83 2.43
1730 2682 3.190118 CGTCCTCGGTAGACTGTTAGTTT 59.810 47.826 0.00 0.00 31.83 2.66
1731 2683 2.746362 CGTCCTCGGTAGACTGTTAGTT 59.254 50.000 0.00 0.00 31.83 2.24
1769 2735 3.878699 ACCAACCGACTTTACAACGAAAT 59.121 39.130 0.00 0.00 0.00 2.17
1814 2787 2.744202 CCTTCCTCCTTCGTTGTTGATG 59.256 50.000 0.00 0.00 0.00 3.07
1818 2791 1.348036 CCTCCTTCCTCCTTCGTTGTT 59.652 52.381 0.00 0.00 0.00 2.83
1822 2795 0.836400 TTGCCTCCTTCCTCCTTCGT 60.836 55.000 0.00 0.00 0.00 3.85
1873 3022 4.442375 TCCAAAACAAAGTTGCGAGAAA 57.558 36.364 0.00 0.00 0.00 2.52
1887 3036 5.751509 GGGTGTAACAAGTTTCATCCAAAAC 59.248 40.000 14.60 0.00 39.85 2.43
1906 3059 5.658190 CCATCTTTATCTGGAATTTGGGTGT 59.342 40.000 0.00 0.00 34.24 4.16
1971 3124 2.020694 GCATTGACTCCATCCACCAGG 61.021 57.143 0.00 0.00 0.00 4.45
2016 3169 4.060667 GTGTGGATGGGGGTGGGG 62.061 72.222 0.00 0.00 0.00 4.96
2017 3170 4.060667 GGTGTGGATGGGGGTGGG 62.061 72.222 0.00 0.00 0.00 4.61
2018 3171 4.060667 GGGTGTGGATGGGGGTGG 62.061 72.222 0.00 0.00 0.00 4.61
2019 3172 2.941025 AGGGTGTGGATGGGGGTG 60.941 66.667 0.00 0.00 0.00 4.61
2020 3173 2.614013 GAGGGTGTGGATGGGGGT 60.614 66.667 0.00 0.00 0.00 4.95
2021 3174 3.420482 GGAGGGTGTGGATGGGGG 61.420 72.222 0.00 0.00 0.00 5.40
2022 3175 2.237965 TTGGAGGGTGTGGATGGGG 61.238 63.158 0.00 0.00 0.00 4.96
2023 3176 1.000896 GTTGGAGGGTGTGGATGGG 60.001 63.158 0.00 0.00 0.00 4.00
2024 3177 1.000896 GGTTGGAGGGTGTGGATGG 60.001 63.158 0.00 0.00 0.00 3.51
2025 3178 1.000896 GGGTTGGAGGGTGTGGATG 60.001 63.158 0.00 0.00 0.00 3.51
2026 3179 1.071314 TTGGGTTGGAGGGTGTGGAT 61.071 55.000 0.00 0.00 0.00 3.41
2027 3180 1.698116 TTGGGTTGGAGGGTGTGGA 60.698 57.895 0.00 0.00 0.00 4.02
2028 3181 1.530655 GTTGGGTTGGAGGGTGTGG 60.531 63.158 0.00 0.00 0.00 4.17
2029 3182 1.896660 CGTTGGGTTGGAGGGTGTG 60.897 63.158 0.00 0.00 0.00 3.82
2030 3183 2.513895 CGTTGGGTTGGAGGGTGT 59.486 61.111 0.00 0.00 0.00 4.16
2031 3184 2.983592 GCGTTGGGTTGGAGGGTG 60.984 66.667 0.00 0.00 0.00 4.61
2032 3185 4.280019 GGCGTTGGGTTGGAGGGT 62.280 66.667 0.00 0.00 0.00 4.34
2033 3186 4.278513 TGGCGTTGGGTTGGAGGG 62.279 66.667 0.00 0.00 0.00 4.30
2034 3187 2.983592 GTGGCGTTGGGTTGGAGG 60.984 66.667 0.00 0.00 0.00 4.30
2035 3188 2.983592 GGTGGCGTTGGGTTGGAG 60.984 66.667 0.00 0.00 0.00 3.86
2036 3189 3.810188 TGGTGGCGTTGGGTTGGA 61.810 61.111 0.00 0.00 0.00 3.53
2047 3200 0.889186 ATTTCTGGTGTCGTGGTGGC 60.889 55.000 0.00 0.00 0.00 5.01
2050 3203 2.289444 CCACTATTTCTGGTGTCGTGGT 60.289 50.000 0.00 0.00 36.56 4.16
2117 3473 7.259290 TCTTGTGTTCCTCTGTGTTTATTTC 57.741 36.000 0.00 0.00 0.00 2.17
2177 3546 2.287608 GCAAAGTTTCGCTAGCTTTGGT 60.288 45.455 21.19 0.35 45.25 3.67
2185 3554 6.040504 TCTCCTGATATAGCAAAGTTTCGCTA 59.959 38.462 16.72 16.72 44.40 4.26
2205 3574 2.307686 TCGGCCATTTTTAACCTCTCCT 59.692 45.455 2.24 0.00 0.00 3.69
2216 3585 5.227152 GTTGTTGTAAATCTCGGCCATTTT 58.773 37.500 2.24 0.00 0.00 1.82
2220 3589 1.801771 CGTTGTTGTAAATCTCGGCCA 59.198 47.619 2.24 0.00 0.00 5.36
2292 3661 5.748630 TCGATATGAATCAGTTTCGACTTGG 59.251 40.000 9.76 0.00 37.13 3.61
2299 3668 9.604626 GGATCAATTTCGATATGAATCAGTTTC 57.395 33.333 0.00 0.00 36.22 2.78
2308 3677 6.595326 GCCATAGTGGATCAATTTCGATATGA 59.405 38.462 0.00 0.00 40.96 2.15
2313 3682 3.476552 GGCCATAGTGGATCAATTTCGA 58.523 45.455 0.00 0.00 40.96 3.71
2484 3854 6.484643 AGTGCAACATATACCTGCTGATTTAG 59.515 38.462 0.00 0.00 41.43 1.85
2707 4136 9.453572 AGAGAGTGCATATAAATTTCTCAACAA 57.546 29.630 0.00 0.00 33.73 2.83
2708 4137 9.102757 GAGAGAGTGCATATAAATTTCTCAACA 57.897 33.333 0.00 0.00 33.73 3.33
2709 4138 9.323985 AGAGAGAGTGCATATAAATTTCTCAAC 57.676 33.333 0.00 0.00 33.73 3.18
2710 4139 9.322773 CAGAGAGAGTGCATATAAATTTCTCAA 57.677 33.333 0.00 0.00 33.73 3.02
2711 4140 8.481314 ACAGAGAGAGTGCATATAAATTTCTCA 58.519 33.333 0.00 0.00 33.73 3.27
3095 4566 3.663176 GTGTCCGGGTCGACGACA 61.663 66.667 27.77 17.40 35.40 4.35
3191 4668 0.607217 TCAGCGTCCAGAACTCGGTA 60.607 55.000 0.00 0.00 34.09 4.02
3510 5196 1.398960 GGCTAAACGCATGCATCGATC 60.399 52.381 19.57 1.95 41.67 3.69
3513 5199 1.368019 CGGCTAAACGCATGCATCG 60.368 57.895 19.57 14.34 41.67 3.84
3528 5214 1.012486 ACCAAAGTCGATCGAACGGC 61.012 55.000 21.31 12.09 38.20 5.68
3529 5215 1.425412 AACCAAAGTCGATCGAACGG 58.575 50.000 21.31 18.73 0.00 4.44
3530 5216 2.729882 AGAAACCAAAGTCGATCGAACG 59.270 45.455 21.31 9.01 0.00 3.95
3531 5217 3.739300 TCAGAAACCAAAGTCGATCGAAC 59.261 43.478 21.31 13.94 0.00 3.95
3536 5237 8.842358 TTAGTTTATCAGAAACCAAAGTCGAT 57.158 30.769 0.00 0.00 0.00 3.59
3544 5245 8.713708 TCCCAAAATTAGTTTATCAGAAACCA 57.286 30.769 0.00 0.00 0.00 3.67
3556 5257 7.165485 GCCACCTTTTAATCCCAAAATTAGTT 58.835 34.615 0.00 0.00 0.00 2.24
3730 5444 1.066918 CGCCGGTAAAGCTCCGTAT 59.933 57.895 11.03 0.00 45.63 3.06
3786 5508 4.260702 CGTACGTTCTGGTAGGAGAATCTC 60.261 50.000 7.22 0.71 34.50 2.75
3814 5536 1.776034 GAATCAAGATCCGCACGGCC 61.776 60.000 3.66 0.00 34.68 6.13
3815 5537 0.811616 AGAATCAAGATCCGCACGGC 60.812 55.000 3.66 0.00 34.68 5.68
4179 5958 0.393077 ATGGCGACGGGAGGATAAAG 59.607 55.000 0.00 0.00 0.00 1.85
4183 5962 2.063979 TGAATGGCGACGGGAGGAT 61.064 57.895 0.00 0.00 0.00 3.24
4196 6003 4.672542 CGCAACCCAAGTTATCAGTGAATG 60.673 45.833 0.00 0.00 33.27 2.67
4199 6006 2.422597 CGCAACCCAAGTTATCAGTGA 58.577 47.619 0.00 0.00 33.27 3.41
4200 6007 1.468520 CCGCAACCCAAGTTATCAGTG 59.531 52.381 0.00 0.00 33.27 3.66
4201 6008 1.349688 TCCGCAACCCAAGTTATCAGT 59.650 47.619 0.00 0.00 33.27 3.41
4202 6009 2.107950 TCCGCAACCCAAGTTATCAG 57.892 50.000 0.00 0.00 33.27 2.90
4203 6010 2.570415 TTCCGCAACCCAAGTTATCA 57.430 45.000 0.00 0.00 33.27 2.15
4204 6011 3.192633 ACAATTCCGCAACCCAAGTTATC 59.807 43.478 0.00 0.00 33.27 1.75
4205 6012 3.056891 CACAATTCCGCAACCCAAGTTAT 60.057 43.478 0.00 0.00 33.27 1.89
4207 6014 1.068434 CACAATTCCGCAACCCAAGTT 59.932 47.619 0.00 0.00 36.33 2.66
4394 6204 2.350522 CCTGTATGTTGACTCTGGTGC 58.649 52.381 0.00 0.00 0.00 5.01
4424 6234 0.249120 TATGCGACCACAGACCTTGG 59.751 55.000 0.00 0.00 40.32 3.61
4426 6236 5.724328 CATATATATGCGACCACAGACCTT 58.276 41.667 9.75 0.00 0.00 3.50
4471 6283 1.264557 CACGTACGGACCATGCAAAAA 59.735 47.619 21.06 0.00 0.00 1.94
4520 6335 9.892130 CACTATTTGTATAGTCTTTTCCTTCCT 57.108 33.333 0.00 0.00 44.01 3.36
4543 6362 8.904834 ACGTCTGTGATAAGTCTATAAATCACT 58.095 33.333 13.59 0.00 45.40 3.41
4560 6379 7.184175 CGTATACGACATCTCACGTCTGTGA 62.184 48.000 20.58 0.00 46.97 3.58
4561 6380 5.066368 CGTATACGACATCTCACGTCTGTG 61.066 50.000 20.58 0.00 44.20 3.66
4562 6381 3.001026 CGTATACGACATCTCACGTCTGT 59.999 47.826 20.58 0.00 42.61 3.41
4563 6382 3.532950 CGTATACGACATCTCACGTCTG 58.467 50.000 20.58 0.00 42.61 3.51
4564 6383 2.543012 CCGTATACGACATCTCACGTCT 59.457 50.000 26.37 0.00 42.61 4.18
4565 6384 2.349249 CCCGTATACGACATCTCACGTC 60.349 54.545 26.37 0.00 42.61 4.34
4566 6385 1.600957 CCCGTATACGACATCTCACGT 59.399 52.381 26.37 0.00 44.72 4.49
4567 6386 1.869132 TCCCGTATACGACATCTCACG 59.131 52.381 26.37 6.15 43.02 4.35
4568 6387 3.852572 GCTTCCCGTATACGACATCTCAC 60.853 52.174 26.37 4.55 43.02 3.51
4569 6388 2.292569 GCTTCCCGTATACGACATCTCA 59.707 50.000 26.37 2.50 43.02 3.27
4570 6389 2.664971 CGCTTCCCGTATACGACATCTC 60.665 54.545 26.37 9.51 43.02 2.75
4571 6390 1.266175 CGCTTCCCGTATACGACATCT 59.734 52.381 26.37 0.00 43.02 2.90
4572 6391 1.265095 TCGCTTCCCGTATACGACATC 59.735 52.381 26.37 9.98 43.02 3.06
4573 6392 1.311859 TCGCTTCCCGTATACGACAT 58.688 50.000 26.37 0.00 43.02 3.06
4574 6393 1.093972 TTCGCTTCCCGTATACGACA 58.906 50.000 26.37 9.32 43.02 4.35
4575 6394 1.848608 GTTTCGCTTCCCGTATACGAC 59.151 52.381 26.37 9.30 43.02 4.34
4576 6395 1.745087 AGTTTCGCTTCCCGTATACGA 59.255 47.619 26.37 4.58 43.02 3.43
4577 6396 2.199291 AGTTTCGCTTCCCGTATACG 57.801 50.000 18.40 18.40 38.35 3.06
4578 6397 5.397326 CCTATAGTTTCGCTTCCCGTATAC 58.603 45.833 0.00 0.00 38.35 1.47
4579 6398 4.460382 CCCTATAGTTTCGCTTCCCGTATA 59.540 45.833 0.00 0.00 38.35 1.47
4580 6399 3.257624 CCCTATAGTTTCGCTTCCCGTAT 59.742 47.826 0.00 0.00 38.35 3.06
4581 6400 2.624838 CCCTATAGTTTCGCTTCCCGTA 59.375 50.000 0.00 0.00 38.35 4.02
4582 6401 1.411612 CCCTATAGTTTCGCTTCCCGT 59.588 52.381 0.00 0.00 38.35 5.28
4583 6402 1.684983 TCCCTATAGTTTCGCTTCCCG 59.315 52.381 0.00 0.00 38.61 5.14
4584 6403 3.614390 CGATCCCTATAGTTTCGCTTCCC 60.614 52.174 0.00 0.00 0.00 3.97
4585 6404 3.576648 CGATCCCTATAGTTTCGCTTCC 58.423 50.000 0.00 0.00 0.00 3.46
4586 6405 3.255149 TCCGATCCCTATAGTTTCGCTTC 59.745 47.826 0.00 0.00 0.00 3.86
4587 6406 3.228453 TCCGATCCCTATAGTTTCGCTT 58.772 45.455 0.00 0.00 0.00 4.68
4588 6407 2.820787 CTCCGATCCCTATAGTTTCGCT 59.179 50.000 0.00 0.00 0.00 4.93
4589 6408 2.671632 GCTCCGATCCCTATAGTTTCGC 60.672 54.545 0.00 0.00 0.00 4.70
4590 6409 2.414293 CGCTCCGATCCCTATAGTTTCG 60.414 54.545 0.00 4.42 0.00 3.46
4591 6410 2.094649 CCGCTCCGATCCCTATAGTTTC 60.095 54.545 0.00 0.00 0.00 2.78
4592 6411 1.893801 CCGCTCCGATCCCTATAGTTT 59.106 52.381 0.00 0.00 0.00 2.66
4593 6412 1.546961 CCGCTCCGATCCCTATAGTT 58.453 55.000 0.00 0.00 0.00 2.24
4594 6413 0.323542 CCCGCTCCGATCCCTATAGT 60.324 60.000 0.00 0.00 0.00 2.12
4595 6414 1.668101 GCCCGCTCCGATCCCTATAG 61.668 65.000 0.00 0.00 0.00 1.31
4596 6415 1.681327 GCCCGCTCCGATCCCTATA 60.681 63.158 0.00 0.00 0.00 1.31
4597 6416 2.997897 GCCCGCTCCGATCCCTAT 60.998 66.667 0.00 0.00 0.00 2.57
4598 6417 4.533124 TGCCCGCTCCGATCCCTA 62.533 66.667 0.00 0.00 0.00 3.53
4613 6432 2.969238 CTGATGATCGGGCCGTGC 60.969 66.667 27.32 18.93 0.00 5.34
4614 6433 1.884464 CACTGATGATCGGGCCGTG 60.884 63.158 27.32 10.35 0.00 4.94
4615 6434 2.501128 CACTGATGATCGGGCCGT 59.499 61.111 27.32 13.58 0.00 5.68
4616 6435 2.969238 GCACTGATGATCGGGCCG 60.969 66.667 22.51 22.51 0.00 6.13
4617 6436 1.596477 GAGCACTGATGATCGGGCC 60.596 63.158 6.19 0.00 30.17 5.80
4618 6437 0.462581 TTGAGCACTGATGATCGGGC 60.463 55.000 6.19 4.89 44.58 6.13
4619 6438 1.134580 ACTTGAGCACTGATGATCGGG 60.135 52.381 6.19 0.00 44.58 5.14
4620 6439 2.306341 ACTTGAGCACTGATGATCGG 57.694 50.000 0.00 0.00 44.58 4.18
4621 6440 4.676546 TCTTACTTGAGCACTGATGATCG 58.323 43.478 0.00 0.00 44.58 3.69
4633 6452 4.825422 TGTTGGAGATGCTCTTACTTGAG 58.175 43.478 0.00 0.00 37.16 3.02
4634 6453 4.825422 CTGTTGGAGATGCTCTTACTTGA 58.175 43.478 0.00 0.00 0.00 3.02
4635 6454 3.373439 GCTGTTGGAGATGCTCTTACTTG 59.627 47.826 0.00 0.00 0.00 3.16
4636 6455 3.604582 GCTGTTGGAGATGCTCTTACTT 58.395 45.455 0.00 0.00 0.00 2.24
4681 6500 2.202349 GCGCGTGGCAAACAGATC 60.202 61.111 8.43 0.00 42.87 2.75
4850 6727 7.708752 GGTTGGAAGATGTTTGTGACAAATTTA 59.291 33.333 14.40 4.72 42.62 1.40
4899 6805 1.216678 TGGTTGGATGAACTTGTGGGT 59.783 47.619 0.00 0.00 34.66 4.51
5052 6967 1.969809 GCTTCACGTGATGCGATGCA 61.970 55.000 32.30 10.86 44.86 3.96
5095 7010 3.056393 ACATTCCCGTGAAGATGTCGTTA 60.056 43.478 0.00 0.00 33.05 3.18
5209 7127 2.434843 CCCTCTGACGCTATGGCCA 61.435 63.158 8.56 8.56 34.44 5.36
5304 7280 4.161295 CTTCGGCGCCATGGGAGA 62.161 66.667 28.98 11.71 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.