Multiple sequence alignment - TraesCS3B01G088100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G088100 chr3B 100.000 2853 0 0 846 3698 56080123 56077271 0.000000e+00 5269.0
1 TraesCS3B01G088100 chr3B 90.686 1750 163 0 928 2677 56131767 56130018 0.000000e+00 2329.0
2 TraesCS3B01G088100 chr3B 86.128 1831 244 8 859 2684 56071253 56069428 0.000000e+00 1965.0
3 TraesCS3B01G088100 chr3B 100.000 698 0 0 1 698 56080968 56080271 0.000000e+00 1290.0
4 TraesCS3B01G088100 chr3B 88.210 687 81 0 3012 3698 56130025 56129339 0.000000e+00 821.0
5 TraesCS3B01G088100 chr3B 84.104 692 103 5 3012 3698 56069442 56068753 0.000000e+00 662.0
6 TraesCS3B01G088100 chr3B 98.447 322 5 0 2688 3009 425379341 425379020 5.360000e-158 568.0
7 TraesCS3B01G088100 chr3D 98.151 1839 34 0 846 2684 33357065 33355227 0.000000e+00 3208.0
8 TraesCS3B01G088100 chr3D 90.400 1750 167 1 928 2677 33374805 33373057 0.000000e+00 2300.0
9 TraesCS3B01G088100 chr3D 85.776 1842 244 11 857 2684 33335735 33333898 0.000000e+00 1934.0
10 TraesCS3B01G088100 chr3D 97.234 687 19 0 3012 3698 33355241 33354555 0.000000e+00 1164.0
11 TraesCS3B01G088100 chr3D 96.679 542 18 0 1 542 33357687 33357146 0.000000e+00 902.0
12 TraesCS3B01G088100 chr3D 88.792 687 77 0 3012 3698 33373064 33372378 0.000000e+00 843.0
13 TraesCS3B01G088100 chr3D 85.426 693 92 7 3012 3698 33333912 33333223 0.000000e+00 712.0
14 TraesCS3B01G088100 chr3A 95.052 1839 87 1 846 2684 46009669 46007835 0.000000e+00 2889.0
15 TraesCS3B01G088100 chr3A 90.286 1750 170 0 928 2677 46026361 46024612 0.000000e+00 2290.0
16 TraesCS3B01G088100 chr3A 93.450 687 45 0 3012 3698 46007849 46007163 0.000000e+00 1020.0
17 TraesCS3B01G088100 chr3A 88.501 687 79 0 3012 3698 46024619 46023933 0.000000e+00 832.0
18 TraesCS3B01G088100 chr3A 84.703 706 60 18 3 693 46010391 46009719 0.000000e+00 662.0
19 TraesCS3B01G088100 chr3A 86.486 444 60 0 1106 1549 45941053 45940610 4.290000e-134 488.0
20 TraesCS3B01G088100 chr3A 97.368 38 1 0 463 500 46010661 46010624 8.570000e-07 65.8
21 TraesCS3B01G088100 chr1B 98.176 329 5 1 2688 3016 456734418 456734091 1.150000e-159 573.0
22 TraesCS3B01G088100 chr5B 97.866 328 7 0 2688 3015 254958178 254957851 5.360000e-158 568.0
23 TraesCS3B01G088100 chr5B 98.154 325 6 0 2688 3012 477969817 477969493 5.360000e-158 568.0
24 TraesCS3B01G088100 chr6A 98.447 322 4 1 2689 3009 359043118 359042797 1.930000e-157 566.0
25 TraesCS3B01G088100 chr6A 98.137 322 6 0 2688 3009 4393472 4393793 2.490000e-156 562.0
26 TraesCS3B01G088100 chr2B 98.131 321 6 0 2688 3008 367718973 367719293 8.970000e-156 560.0
27 TraesCS3B01G088100 chr2B 98.131 321 6 0 2688 3008 545177303 545176983 8.970000e-156 560.0
28 TraesCS3B01G088100 chr1A 97.826 322 7 0 2689 3010 75733786 75734107 1.160000e-154 556.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G088100 chr3B 56077271 56080968 3697 True 3279.5 5269 100.000000 1 3698 2 chr3B.!!$R3 3697
1 TraesCS3B01G088100 chr3B 56129339 56131767 2428 True 1575.0 2329 89.448000 928 3698 2 chr3B.!!$R4 2770
2 TraesCS3B01G088100 chr3B 56068753 56071253 2500 True 1313.5 1965 85.116000 859 3698 2 chr3B.!!$R2 2839
3 TraesCS3B01G088100 chr3D 33354555 33357687 3132 True 1758.0 3208 97.354667 1 3698 3 chr3D.!!$R2 3697
4 TraesCS3B01G088100 chr3D 33372378 33374805 2427 True 1571.5 2300 89.596000 928 3698 2 chr3D.!!$R3 2770
5 TraesCS3B01G088100 chr3D 33333223 33335735 2512 True 1323.0 1934 85.601000 857 3698 2 chr3D.!!$R1 2841
6 TraesCS3B01G088100 chr3A 46023933 46026361 2428 True 1561.0 2290 89.393500 928 3698 2 chr3A.!!$R3 2770
7 TraesCS3B01G088100 chr3A 46007163 46010661 3498 True 1159.2 2889 92.643250 3 3698 4 chr3A.!!$R2 3695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 705 0.472925 TAGGAAGGGCCGCCATCATA 60.473 55.0 18.67 8.15 43.43 2.15 F
1599 1886 2.442236 TTCAAGGAATGGGAGGCATC 57.558 50.0 0.00 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 2048 2.745515 AAAGTGGTAGAAGCTCGGTC 57.254 50.0 0.0 0.0 0.0 4.79 R
2739 3038 0.035152 TTGCGATGCTTCCAGGTCAT 60.035 50.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 442 2.677289 ATGAGGTGGGAGCAGGCAG 61.677 63.158 0.00 0.00 0.00 4.85
183 455 1.077858 AGGCAGCCAAGAAGCTAGC 60.078 57.895 15.80 6.62 42.61 3.42
413 693 4.662278 TCAACCACAAAATCCTAGGAAGG 58.338 43.478 17.30 12.91 45.21 3.46
425 705 0.472925 TAGGAAGGGCCGCCATCATA 60.473 55.000 18.67 8.15 43.43 2.15
537 817 6.506500 TGCTTCTTTCAAGATCCTGATTTC 57.493 37.500 0.00 0.00 34.49 2.17
543 823 8.696043 TCTTTCAAGATCCTGATTTCTCAAAA 57.304 30.769 0.00 0.00 0.00 2.44
549 829 9.871238 CAAGATCCTGATTTCTCAAAATTTGAT 57.129 29.630 9.02 0.00 39.30 2.57
585 866 9.076596 GTTATTGATTTAGAAAATCTGCCACAC 57.923 33.333 12.25 1.34 0.00 3.82
586 867 6.647334 TTGATTTAGAAAATCTGCCACACA 57.353 33.333 12.25 0.00 0.00 3.72
587 868 6.647334 TGATTTAGAAAATCTGCCACACAA 57.353 33.333 12.25 0.00 0.00 3.33
637 921 4.647424 TTTTTGAAATGTGACGAGCCTT 57.353 36.364 0.00 0.00 0.00 4.35
638 922 5.759506 TTTTTGAAATGTGACGAGCCTTA 57.240 34.783 0.00 0.00 0.00 2.69
682 966 6.272822 AGAGTATTGCCCATTGTTTTTCTC 57.727 37.500 0.00 0.00 0.00 2.87
686 970 5.659440 ATTGCCCATTGTTTTTCTCGTAT 57.341 34.783 0.00 0.00 0.00 3.06
1239 1526 7.977904 TGTTTGATGTTGATGTCATCATAGAC 58.022 34.615 16.19 11.91 46.84 2.59
1323 1610 6.494835 AGCCTATGGTCTCTTGTTTTGAAAAT 59.505 34.615 0.00 0.00 0.00 1.82
1427 1714 3.657610 TCAGCTTGGATAGATCCCTTCA 58.342 45.455 6.09 0.00 46.59 3.02
1599 1886 2.442236 TTCAAGGAATGGGAGGCATC 57.558 50.000 0.00 0.00 0.00 3.91
1761 2048 3.446873 AGTGTGATCAGCTAGAGACCAAG 59.553 47.826 0.00 0.00 0.00 3.61
1902 2193 3.319137 TCGAACTTCCAGATCCTTGTG 57.681 47.619 0.00 0.00 0.00 3.33
1918 2209 1.496060 TGTGACCACAAGAGACCTGT 58.504 50.000 0.00 0.00 38.56 4.00
2364 2655 4.985413 ACCACTCAATACATGAAATTGCG 58.015 39.130 16.02 13.68 37.67 4.85
2416 2707 3.914426 ATCTTCTGCAACCGATACCTT 57.086 42.857 0.00 0.00 0.00 3.50
2418 2709 4.015872 TCTTCTGCAACCGATACCTTTT 57.984 40.909 0.00 0.00 0.00 2.27
2470 2761 5.512942 TGATTTATTGAGGTCACTTGGGA 57.487 39.130 0.00 0.00 0.00 4.37
2517 2808 6.039270 CCCTATTCATGAATGCGGAAAGTAAA 59.961 38.462 27.59 5.25 32.50 2.01
2684 2983 2.107366 TGAGCATATCCGTGTCTTGGA 58.893 47.619 0.00 0.00 40.46 3.53
2686 2985 3.062763 GAGCATATCCGTGTCTTGGATG 58.937 50.000 4.80 0.00 45.70 3.51
2687 2986 2.700371 AGCATATCCGTGTCTTGGATGA 59.300 45.455 4.80 0.00 45.70 2.92
2688 2987 2.802816 GCATATCCGTGTCTTGGATGAC 59.197 50.000 4.80 0.00 45.70 3.06
2689 2988 3.393800 CATATCCGTGTCTTGGATGACC 58.606 50.000 4.80 0.00 45.70 4.02
2690 2989 0.541863 ATCCGTGTCTTGGATGACCC 59.458 55.000 0.00 0.00 44.51 4.46
2691 2990 0.834261 TCCGTGTCTTGGATGACCCA 60.834 55.000 0.00 0.00 44.93 4.51
2699 2998 3.888424 TGGATGACCCAAGCTGATG 57.112 52.632 0.00 0.00 43.29 3.07
2700 2999 0.394762 TGGATGACCCAAGCTGATGC 60.395 55.000 0.00 0.00 43.29 3.91
2701 3000 0.394762 GGATGACCCAAGCTGATGCA 60.395 55.000 0.00 0.00 36.88 3.96
2702 3001 0.737219 GATGACCCAAGCTGATGCAC 59.263 55.000 0.00 0.00 42.74 4.57
2703 3002 0.038599 ATGACCCAAGCTGATGCACA 59.961 50.000 0.00 0.00 42.74 4.57
2704 3003 0.178995 TGACCCAAGCTGATGCACAA 60.179 50.000 0.00 0.00 42.74 3.33
2705 3004 0.961019 GACCCAAGCTGATGCACAAA 59.039 50.000 0.00 0.00 42.74 2.83
2706 3005 0.963962 ACCCAAGCTGATGCACAAAG 59.036 50.000 0.00 0.00 42.74 2.77
2707 3006 0.245539 CCCAAGCTGATGCACAAAGG 59.754 55.000 0.00 0.00 42.74 3.11
2708 3007 1.250328 CCAAGCTGATGCACAAAGGA 58.750 50.000 0.00 0.00 42.74 3.36
2709 3008 1.068055 CCAAGCTGATGCACAAAGGAC 60.068 52.381 0.00 0.00 42.74 3.85
2710 3009 1.884579 CAAGCTGATGCACAAAGGACT 59.115 47.619 0.00 0.00 42.74 3.85
2711 3010 2.283145 AGCTGATGCACAAAGGACTT 57.717 45.000 0.00 0.00 42.74 3.01
2712 3011 3.423539 AGCTGATGCACAAAGGACTTA 57.576 42.857 0.00 0.00 42.74 2.24
2713 3012 3.077359 AGCTGATGCACAAAGGACTTAC 58.923 45.455 0.00 0.00 42.74 2.34
2714 3013 2.813754 GCTGATGCACAAAGGACTTACA 59.186 45.455 0.00 0.00 39.41 2.41
2715 3014 3.441572 GCTGATGCACAAAGGACTTACAT 59.558 43.478 0.00 0.00 39.41 2.29
2716 3015 4.437930 GCTGATGCACAAAGGACTTACATC 60.438 45.833 0.00 0.00 39.41 3.06
2717 3016 4.009675 TGATGCACAAAGGACTTACATCC 58.990 43.478 0.00 0.00 39.28 3.51
2718 3017 2.422597 TGCACAAAGGACTTACATCCG 58.577 47.619 0.00 0.00 44.22 4.18
2719 3018 1.130561 GCACAAAGGACTTACATCCGC 59.869 52.381 0.00 0.00 44.22 5.54
2720 3019 1.393539 CACAAAGGACTTACATCCGCG 59.606 52.381 0.00 0.00 44.22 6.46
2721 3020 1.274167 ACAAAGGACTTACATCCGCGA 59.726 47.619 8.23 0.00 44.22 5.87
2722 3021 1.659098 CAAAGGACTTACATCCGCGAC 59.341 52.381 8.23 0.00 44.22 5.19
2723 3022 0.179145 AAGGACTTACATCCGCGACG 60.179 55.000 8.23 0.00 44.22 5.12
2724 3023 2.228914 GGACTTACATCCGCGACGC 61.229 63.158 8.23 10.49 0.00 5.19
2725 3024 1.226603 GACTTACATCCGCGACGCT 60.227 57.895 19.02 0.40 0.00 5.07
2726 3025 1.472276 GACTTACATCCGCGACGCTG 61.472 60.000 19.02 12.03 0.00 5.18
2727 3026 2.860628 CTTACATCCGCGACGCTGC 61.861 63.158 19.02 0.00 0.00 5.25
2728 3027 3.350909 TTACATCCGCGACGCTGCT 62.351 57.895 19.02 0.00 0.00 4.24
2731 3030 4.212913 ATCCGCGACGCTGCTGAT 62.213 61.111 19.02 11.14 34.50 2.90
2732 3031 4.854784 TCCGCGACGCTGCTGATC 62.855 66.667 19.02 0.00 0.00 2.92
2735 3034 4.521062 GCGACGCTGCTGATCCCT 62.521 66.667 13.73 0.00 0.00 4.20
2736 3035 2.185350 CGACGCTGCTGATCCCTT 59.815 61.111 0.00 0.00 0.00 3.95
2737 3036 2.169789 CGACGCTGCTGATCCCTTG 61.170 63.158 0.00 0.00 0.00 3.61
2738 3037 1.817099 GACGCTGCTGATCCCTTGG 60.817 63.158 0.00 0.00 0.00 3.61
2739 3038 2.244117 GACGCTGCTGATCCCTTGGA 62.244 60.000 0.00 0.00 35.55 3.53
2740 3039 1.147824 CGCTGCTGATCCCTTGGAT 59.852 57.895 0.00 0.00 46.28 3.41
2741 3040 1.164662 CGCTGCTGATCCCTTGGATG 61.165 60.000 0.00 0.00 43.27 3.51
2742 3041 0.182061 GCTGCTGATCCCTTGGATGA 59.818 55.000 0.00 0.00 43.27 2.92
2743 3042 1.964552 CTGCTGATCCCTTGGATGAC 58.035 55.000 0.00 0.00 43.27 3.06
2744 3043 0.548031 TGCTGATCCCTTGGATGACC 59.452 55.000 0.00 0.00 43.27 4.02
2745 3044 0.842635 GCTGATCCCTTGGATGACCT 59.157 55.000 0.00 0.00 43.27 3.85
2746 3045 1.476471 GCTGATCCCTTGGATGACCTG 60.476 57.143 0.00 0.00 43.27 4.00
2747 3046 1.142465 CTGATCCCTTGGATGACCTGG 59.858 57.143 0.00 0.00 43.27 4.45
2748 3047 1.274358 TGATCCCTTGGATGACCTGGA 60.274 52.381 0.00 0.00 43.27 3.86
2749 3048 1.846439 GATCCCTTGGATGACCTGGAA 59.154 52.381 0.00 0.00 43.27 3.53
2750 3049 1.289160 TCCCTTGGATGACCTGGAAG 58.711 55.000 0.00 0.00 37.04 3.46
2751 3050 0.394899 CCCTTGGATGACCTGGAAGC 60.395 60.000 0.00 0.00 37.04 3.86
2752 3051 0.329261 CCTTGGATGACCTGGAAGCA 59.671 55.000 0.00 0.00 37.04 3.91
2753 3052 1.064166 CCTTGGATGACCTGGAAGCAT 60.064 52.381 0.00 0.61 37.04 3.79
2754 3053 2.295885 CTTGGATGACCTGGAAGCATC 58.704 52.381 0.00 10.16 38.10 3.91
2755 3054 0.178767 TGGATGACCTGGAAGCATCG 59.821 55.000 0.00 0.00 39.36 3.84
2756 3055 1.162800 GGATGACCTGGAAGCATCGC 61.163 60.000 0.00 2.12 39.36 4.58
2757 3056 0.462581 GATGACCTGGAAGCATCGCA 60.463 55.000 0.00 0.00 30.41 5.10
2758 3057 0.035152 ATGACCTGGAAGCATCGCAA 60.035 50.000 0.00 0.00 0.00 4.85
2759 3058 0.955428 TGACCTGGAAGCATCGCAAC 60.955 55.000 0.00 0.00 0.00 4.17
2760 3059 1.970917 GACCTGGAAGCATCGCAACG 61.971 60.000 0.00 0.00 0.00 4.10
2761 3060 1.741401 CCTGGAAGCATCGCAACGA 60.741 57.895 0.00 0.00 41.13 3.85
2763 3062 0.729116 CTGGAAGCATCGCAACGATT 59.271 50.000 0.00 0.00 44.59 3.34
2764 3063 0.447406 TGGAAGCATCGCAACGATTG 59.553 50.000 0.00 0.00 44.59 2.67
2765 3064 0.447801 GGAAGCATCGCAACGATTGT 59.552 50.000 0.00 0.00 44.59 2.71
2766 3065 1.527696 GAAGCATCGCAACGATTGTG 58.472 50.000 0.00 0.00 44.59 3.33
2767 3066 0.874390 AAGCATCGCAACGATTGTGT 59.126 45.000 0.00 0.00 44.59 3.72
2768 3067 0.443869 AGCATCGCAACGATTGTGTC 59.556 50.000 0.00 3.65 44.59 3.67
2769 3068 0.443869 GCATCGCAACGATTGTGTCT 59.556 50.000 0.00 0.10 44.59 3.41
2770 3069 1.135972 GCATCGCAACGATTGTGTCTT 60.136 47.619 0.00 0.00 44.59 3.01
2771 3070 2.762472 CATCGCAACGATTGTGTCTTC 58.238 47.619 0.00 0.00 44.59 2.87
2772 3071 1.859383 TCGCAACGATTGTGTCTTCA 58.141 45.000 9.86 0.00 41.72 3.02
2773 3072 2.205911 TCGCAACGATTGTGTCTTCAA 58.794 42.857 9.86 0.00 41.72 2.69
2774 3073 2.805671 TCGCAACGATTGTGTCTTCAAT 59.194 40.909 9.86 0.00 41.72 2.57
2775 3074 2.904319 CGCAACGATTGTGTCTTCAATG 59.096 45.455 0.00 0.00 38.03 2.82
2776 3075 2.658325 GCAACGATTGTGTCTTCAATGC 59.342 45.455 0.00 0.00 38.03 3.56
2777 3076 3.852939 GCAACGATTGTGTCTTCAATGCA 60.853 43.478 0.00 0.00 38.03 3.96
2778 3077 3.818961 ACGATTGTGTCTTCAATGCAG 57.181 42.857 0.00 0.00 38.03 4.41
2779 3078 2.095567 ACGATTGTGTCTTCAATGCAGC 60.096 45.455 0.00 0.00 38.03 5.25
2780 3079 2.730090 CGATTGTGTCTTCAATGCAGCC 60.730 50.000 0.00 0.00 38.03 4.85
2781 3080 1.689984 TTGTGTCTTCAATGCAGCCA 58.310 45.000 0.00 0.00 0.00 4.75
2782 3081 0.953727 TGTGTCTTCAATGCAGCCAC 59.046 50.000 0.00 0.00 0.00 5.01
2783 3082 0.242017 GTGTCTTCAATGCAGCCACC 59.758 55.000 0.00 0.00 0.00 4.61
2784 3083 0.895100 TGTCTTCAATGCAGCCACCC 60.895 55.000 0.00 0.00 0.00 4.61
2785 3084 1.304381 TCTTCAATGCAGCCACCCC 60.304 57.895 0.00 0.00 0.00 4.95
2786 3085 1.304713 CTTCAATGCAGCCACCCCT 60.305 57.895 0.00 0.00 0.00 4.79
2787 3086 0.901580 CTTCAATGCAGCCACCCCTT 60.902 55.000 0.00 0.00 0.00 3.95
2788 3087 0.899717 TTCAATGCAGCCACCCCTTC 60.900 55.000 0.00 0.00 0.00 3.46
2789 3088 2.361610 AATGCAGCCACCCCTTCG 60.362 61.111 0.00 0.00 0.00 3.79
2790 3089 2.905996 AATGCAGCCACCCCTTCGA 61.906 57.895 0.00 0.00 0.00 3.71
2791 3090 3.628646 ATGCAGCCACCCCTTCGAC 62.629 63.158 0.00 0.00 0.00 4.20
2792 3091 4.021925 GCAGCCACCCCTTCGACT 62.022 66.667 0.00 0.00 0.00 4.18
2793 3092 2.656069 GCAGCCACCCCTTCGACTA 61.656 63.158 0.00 0.00 0.00 2.59
2794 3093 1.517832 CAGCCACCCCTTCGACTAG 59.482 63.158 0.00 0.00 0.00 2.57
2795 3094 2.187163 GCCACCCCTTCGACTAGC 59.813 66.667 0.00 0.00 0.00 3.42
2796 3095 2.494918 CCACCCCTTCGACTAGCG 59.505 66.667 0.00 0.00 42.69 4.26
2797 3096 2.348888 CCACCCCTTCGACTAGCGT 61.349 63.158 6.49 0.00 41.80 5.07
2798 3097 1.139095 CACCCCTTCGACTAGCGTC 59.861 63.158 6.49 0.00 41.80 5.19
2799 3098 1.001145 ACCCCTTCGACTAGCGTCT 60.001 57.895 6.49 0.00 41.80 4.18
2800 3099 0.611340 ACCCCTTCGACTAGCGTCTT 60.611 55.000 6.49 0.00 41.80 3.01
2801 3100 0.179134 CCCCTTCGACTAGCGTCTTG 60.179 60.000 6.49 0.00 41.80 3.02
2802 3101 0.179134 CCCTTCGACTAGCGTCTTGG 60.179 60.000 6.49 5.32 41.80 3.61
2803 3102 0.526662 CCTTCGACTAGCGTCTTGGT 59.473 55.000 6.49 0.00 41.80 3.67
2804 3103 1.067776 CCTTCGACTAGCGTCTTGGTT 60.068 52.381 6.49 0.00 41.80 3.67
2805 3104 1.986378 CTTCGACTAGCGTCTTGGTTG 59.014 52.381 6.49 0.00 41.80 3.77
2806 3105 0.388134 TCGACTAGCGTCTTGGTTGC 60.388 55.000 6.49 0.00 41.80 4.17
2807 3106 0.666274 CGACTAGCGTCTTGGTTGCA 60.666 55.000 0.00 0.00 38.03 4.08
2808 3107 1.508632 GACTAGCGTCTTGGTTGCAA 58.491 50.000 0.00 0.00 37.19 4.08
2809 3108 1.871039 GACTAGCGTCTTGGTTGCAAA 59.129 47.619 0.00 0.00 37.19 3.68
2810 3109 1.873591 ACTAGCGTCTTGGTTGCAAAG 59.126 47.619 0.00 0.00 0.00 2.77
2811 3110 2.143122 CTAGCGTCTTGGTTGCAAAGA 58.857 47.619 0.00 0.00 0.00 2.52
2812 3111 1.609208 AGCGTCTTGGTTGCAAAGAT 58.391 45.000 0.00 0.00 36.14 2.40
2813 3112 1.537202 AGCGTCTTGGTTGCAAAGATC 59.463 47.619 0.00 0.00 36.14 2.75
2814 3113 1.266718 GCGTCTTGGTTGCAAAGATCA 59.733 47.619 0.00 0.00 36.14 2.92
2815 3114 2.287547 GCGTCTTGGTTGCAAAGATCAA 60.288 45.455 0.00 3.30 36.14 2.57
2816 3115 3.795150 GCGTCTTGGTTGCAAAGATCAAA 60.795 43.478 0.00 0.00 36.14 2.69
2817 3116 3.976942 CGTCTTGGTTGCAAAGATCAAAG 59.023 43.478 0.00 0.00 36.14 2.77
2818 3117 4.261155 CGTCTTGGTTGCAAAGATCAAAGA 60.261 41.667 0.00 0.09 36.14 2.52
2819 3118 5.591099 GTCTTGGTTGCAAAGATCAAAGAA 58.409 37.500 0.00 0.00 36.14 2.52
2820 3119 5.689068 GTCTTGGTTGCAAAGATCAAAGAAG 59.311 40.000 0.00 0.00 36.14 2.85
2821 3120 5.593909 TCTTGGTTGCAAAGATCAAAGAAGA 59.406 36.000 0.00 0.00 0.00 2.87
2822 3121 5.850557 TGGTTGCAAAGATCAAAGAAGAA 57.149 34.783 0.00 0.00 0.00 2.52
2823 3122 5.835257 TGGTTGCAAAGATCAAAGAAGAAG 58.165 37.500 0.00 0.00 0.00 2.85
2824 3123 4.683320 GGTTGCAAAGATCAAAGAAGAAGC 59.317 41.667 0.00 0.00 0.00 3.86
2825 3124 5.508657 GGTTGCAAAGATCAAAGAAGAAGCT 60.509 40.000 0.00 0.00 0.00 3.74
2826 3125 5.117355 TGCAAAGATCAAAGAAGAAGCTG 57.883 39.130 0.00 0.00 0.00 4.24
2827 3126 3.919197 GCAAAGATCAAAGAAGAAGCTGC 59.081 43.478 0.00 0.00 0.00 5.25
2828 3127 4.156915 CAAAGATCAAAGAAGAAGCTGCG 58.843 43.478 0.00 0.00 0.00 5.18
2829 3128 1.736681 AGATCAAAGAAGAAGCTGCGC 59.263 47.619 0.00 0.00 0.00 6.09
2830 3129 1.736681 GATCAAAGAAGAAGCTGCGCT 59.263 47.619 9.73 0.00 42.56 5.92
2831 3130 1.151668 TCAAAGAAGAAGCTGCGCTC 58.848 50.000 9.73 0.00 38.25 5.03
2832 3131 1.155042 CAAAGAAGAAGCTGCGCTCT 58.845 50.000 9.73 2.40 38.25 4.09
2833 3132 1.136029 CAAAGAAGAAGCTGCGCTCTG 60.136 52.381 9.73 0.00 38.25 3.35
2834 3133 0.673022 AAGAAGAAGCTGCGCTCTGG 60.673 55.000 9.73 0.00 38.25 3.86
2835 3134 2.046507 AAGAAGCTGCGCTCTGGG 60.047 61.111 9.73 0.00 38.25 4.45
2836 3135 4.774503 AGAAGCTGCGCTCTGGGC 62.775 66.667 9.73 5.38 38.25 5.36
2865 3164 4.056125 CTCGAGGCCTGCGTGTCA 62.056 66.667 12.00 0.00 0.00 3.58
2866 3165 3.362399 CTCGAGGCCTGCGTGTCAT 62.362 63.158 12.00 0.00 0.00 3.06
2867 3166 2.887568 CGAGGCCTGCGTGTCATC 60.888 66.667 12.00 0.00 0.00 2.92
2868 3167 2.512515 GAGGCCTGCGTGTCATCC 60.513 66.667 12.00 0.00 0.00 3.51
2869 3168 3.005539 AGGCCTGCGTGTCATCCT 61.006 61.111 3.11 0.00 0.00 3.24
2870 3169 2.512515 GGCCTGCGTGTCATCCTC 60.513 66.667 0.00 0.00 0.00 3.71
2871 3170 2.512515 GCCTGCGTGTCATCCTCC 60.513 66.667 0.00 0.00 0.00 4.30
2872 3171 2.187946 CCTGCGTGTCATCCTCCC 59.812 66.667 0.00 0.00 0.00 4.30
2873 3172 2.659063 CCTGCGTGTCATCCTCCCA 61.659 63.158 0.00 0.00 0.00 4.37
2874 3173 1.448540 CTGCGTGTCATCCTCCCAC 60.449 63.158 0.00 0.00 0.00 4.61
2875 3174 2.171209 CTGCGTGTCATCCTCCCACA 62.171 60.000 0.00 0.00 0.00 4.17
2876 3175 1.448540 GCGTGTCATCCTCCCACAG 60.449 63.158 0.00 0.00 0.00 3.66
2877 3176 1.888436 GCGTGTCATCCTCCCACAGA 61.888 60.000 0.00 0.00 0.00 3.41
2878 3177 0.108615 CGTGTCATCCTCCCACAGAC 60.109 60.000 0.00 0.00 0.00 3.51
2879 3178 0.250513 GTGTCATCCTCCCACAGACC 59.749 60.000 0.00 0.00 0.00 3.85
2880 3179 0.117140 TGTCATCCTCCCACAGACCT 59.883 55.000 0.00 0.00 0.00 3.85
2881 3180 0.539051 GTCATCCTCCCACAGACCTG 59.461 60.000 0.00 0.00 0.00 4.00
2882 3181 0.618680 TCATCCTCCCACAGACCTGG 60.619 60.000 1.82 0.00 34.19 4.45
2889 3188 1.604378 CCACAGACCTGGGATGTCC 59.396 63.158 0.00 0.00 35.61 4.02
2890 3189 1.200760 CCACAGACCTGGGATGTCCA 61.201 60.000 0.00 0.00 44.79 4.02
2891 3190 0.036010 CACAGACCTGGGATGTCCAC 60.036 60.000 0.00 0.00 41.46 4.02
2892 3191 0.178891 ACAGACCTGGGATGTCCACT 60.179 55.000 0.00 0.00 41.46 4.00
2893 3192 0.251354 CAGACCTGGGATGTCCACTG 59.749 60.000 0.00 0.00 41.46 3.66
2894 3193 0.117140 AGACCTGGGATGTCCACTGA 59.883 55.000 0.00 0.00 41.46 3.41
2895 3194 0.984230 GACCTGGGATGTCCACTGAA 59.016 55.000 0.00 0.00 41.46 3.02
2896 3195 0.987294 ACCTGGGATGTCCACTGAAG 59.013 55.000 0.00 0.00 41.46 3.02
2897 3196 0.987294 CCTGGGATGTCCACTGAAGT 59.013 55.000 0.86 0.00 41.46 3.01
2898 3197 1.352352 CCTGGGATGTCCACTGAAGTT 59.648 52.381 0.86 0.00 41.46 2.66
2899 3198 2.571653 CCTGGGATGTCCACTGAAGTTA 59.428 50.000 0.86 0.00 41.46 2.24
2900 3199 3.200825 CCTGGGATGTCCACTGAAGTTAT 59.799 47.826 0.86 0.00 41.46 1.89
2901 3200 4.324563 CCTGGGATGTCCACTGAAGTTATT 60.325 45.833 0.86 0.00 41.46 1.40
2902 3201 5.255397 TGGGATGTCCACTGAAGTTATTT 57.745 39.130 0.86 0.00 41.46 1.40
2903 3202 5.640147 TGGGATGTCCACTGAAGTTATTTT 58.360 37.500 0.86 0.00 41.46 1.82
2904 3203 5.476599 TGGGATGTCCACTGAAGTTATTTTG 59.523 40.000 0.86 0.00 41.46 2.44
2905 3204 5.476945 GGGATGTCCACTGAAGTTATTTTGT 59.523 40.000 0.86 0.00 37.91 2.83
2906 3205 6.381801 GGATGTCCACTGAAGTTATTTTGTG 58.618 40.000 0.00 0.00 35.64 3.33
2907 3206 6.016276 GGATGTCCACTGAAGTTATTTTGTGT 60.016 38.462 0.00 0.00 35.64 3.72
2908 3207 6.767524 TGTCCACTGAAGTTATTTTGTGTT 57.232 33.333 0.00 0.00 0.00 3.32
2909 3208 7.164230 TGTCCACTGAAGTTATTTTGTGTTT 57.836 32.000 0.00 0.00 0.00 2.83
2910 3209 7.254852 TGTCCACTGAAGTTATTTTGTGTTTC 58.745 34.615 0.00 0.00 0.00 2.78
2911 3210 7.122055 TGTCCACTGAAGTTATTTTGTGTTTCT 59.878 33.333 0.00 0.00 0.00 2.52
2912 3211 7.644157 GTCCACTGAAGTTATTTTGTGTTTCTC 59.356 37.037 0.00 0.00 0.00 2.87
2913 3212 6.632834 CCACTGAAGTTATTTTGTGTTTCTCG 59.367 38.462 0.00 0.00 0.00 4.04
2914 3213 6.140737 CACTGAAGTTATTTTGTGTTTCTCGC 59.859 38.462 0.00 0.00 0.00 5.03
2915 3214 5.516090 TGAAGTTATTTTGTGTTTCTCGCC 58.484 37.500 0.00 0.00 0.00 5.54
2916 3215 5.298276 TGAAGTTATTTTGTGTTTCTCGCCT 59.702 36.000 0.00 0.00 0.00 5.52
2917 3216 5.108385 AGTTATTTTGTGTTTCTCGCCTG 57.892 39.130 0.00 0.00 0.00 4.85
2918 3217 4.578928 AGTTATTTTGTGTTTCTCGCCTGT 59.421 37.500 0.00 0.00 0.00 4.00
2919 3218 5.761234 AGTTATTTTGTGTTTCTCGCCTGTA 59.239 36.000 0.00 0.00 0.00 2.74
2920 3219 6.261381 AGTTATTTTGTGTTTCTCGCCTGTAA 59.739 34.615 0.00 0.00 0.00 2.41
2921 3220 5.705609 ATTTTGTGTTTCTCGCCTGTAAT 57.294 34.783 0.00 0.00 0.00 1.89
2922 3221 4.481930 TTTGTGTTTCTCGCCTGTAATG 57.518 40.909 0.00 0.00 0.00 1.90
2923 3222 2.422597 TGTGTTTCTCGCCTGTAATGG 58.577 47.619 0.00 0.00 0.00 3.16
2924 3223 2.224426 TGTGTTTCTCGCCTGTAATGGT 60.224 45.455 0.00 0.00 0.00 3.55
2925 3224 2.159627 GTGTTTCTCGCCTGTAATGGTG 59.840 50.000 0.00 0.00 38.85 4.17
2926 3225 1.130561 GTTTCTCGCCTGTAATGGTGC 59.869 52.381 0.00 0.00 37.51 5.01
2927 3226 0.392461 TTCTCGCCTGTAATGGTGCC 60.392 55.000 0.00 0.00 37.51 5.01
2928 3227 1.221840 CTCGCCTGTAATGGTGCCT 59.778 57.895 0.00 0.00 37.51 4.75
2929 3228 0.811616 CTCGCCTGTAATGGTGCCTC 60.812 60.000 0.00 0.00 37.51 4.70
2930 3229 1.819632 CGCCTGTAATGGTGCCTCC 60.820 63.158 0.00 0.00 0.00 4.30
2931 3230 1.609783 GCCTGTAATGGTGCCTCCT 59.390 57.895 0.00 0.00 37.07 3.69
2932 3231 0.837272 GCCTGTAATGGTGCCTCCTA 59.163 55.000 0.00 0.00 37.07 2.94
2933 3232 1.202698 GCCTGTAATGGTGCCTCCTAG 60.203 57.143 0.00 0.00 37.07 3.02
2934 3233 1.417890 CCTGTAATGGTGCCTCCTAGG 59.582 57.143 0.82 0.82 38.80 3.02
2935 3234 2.398588 CTGTAATGGTGCCTCCTAGGA 58.601 52.381 11.98 11.98 37.67 2.94
2936 3235 2.366916 CTGTAATGGTGCCTCCTAGGAG 59.633 54.545 29.27 29.27 37.67 3.69
2949 3248 5.941555 CTCCTAGGAGGATGTAACAAACT 57.058 43.478 28.68 0.00 44.81 2.66
2951 3250 7.604657 CTCCTAGGAGGATGTAACAAACTAT 57.395 40.000 28.68 0.00 44.81 2.12
2952 3251 7.598759 TCCTAGGAGGATGTAACAAACTATC 57.401 40.000 7.62 0.00 40.06 2.08
2953 3252 7.363031 TCCTAGGAGGATGTAACAAACTATCT 58.637 38.462 7.62 0.00 40.06 1.98
2954 3253 7.506261 TCCTAGGAGGATGTAACAAACTATCTC 59.494 40.741 7.62 0.00 40.06 2.75
2955 3254 7.507616 CCTAGGAGGATGTAACAAACTATCTCT 59.492 40.741 1.05 0.00 37.67 3.10
2956 3255 7.354751 AGGAGGATGTAACAAACTATCTCTC 57.645 40.000 0.00 0.00 0.00 3.20
2957 3256 7.129425 AGGAGGATGTAACAAACTATCTCTCT 58.871 38.462 0.00 0.00 0.00 3.10
2958 3257 7.286775 AGGAGGATGTAACAAACTATCTCTCTC 59.713 40.741 0.00 0.00 0.00 3.20
2959 3258 7.286775 GGAGGATGTAACAAACTATCTCTCTCT 59.713 40.741 0.00 0.00 0.00 3.10
2960 3259 8.602472 AGGATGTAACAAACTATCTCTCTCTT 57.398 34.615 0.00 0.00 0.00 2.85
2961 3260 9.041354 AGGATGTAACAAACTATCTCTCTCTTT 57.959 33.333 0.00 0.00 0.00 2.52
2962 3261 9.660180 GGATGTAACAAACTATCTCTCTCTTTT 57.340 33.333 0.00 0.00 0.00 2.27
2978 3277 9.643652 CTCTCTCTTTTCAATATAATGAAACGC 57.356 33.333 14.21 0.00 46.06 4.84
2979 3278 9.161629 TCTCTCTTTTCAATATAATGAAACGCA 57.838 29.630 14.21 1.69 46.06 5.24
2980 3279 9.773328 CTCTCTTTTCAATATAATGAAACGCAA 57.227 29.630 14.21 1.38 46.06 4.85
2984 3283 9.464248 CTTTTCAATATAATGAAACGCAAAAGC 57.536 29.630 14.21 0.00 46.06 3.51
2985 3284 7.518731 TTCAATATAATGAAACGCAAAAGCC 57.481 32.000 0.55 0.00 36.42 4.35
2986 3285 6.862209 TCAATATAATGAAACGCAAAAGCCT 58.138 32.000 0.00 0.00 0.00 4.58
2987 3286 7.319646 TCAATATAATGAAACGCAAAAGCCTT 58.680 30.769 0.00 0.00 0.00 4.35
2988 3287 7.816995 TCAATATAATGAAACGCAAAAGCCTTT 59.183 29.630 0.00 0.00 0.00 3.11
2989 3288 8.442384 CAATATAATGAAACGCAAAAGCCTTTT 58.558 29.630 0.00 0.00 0.00 2.27
2990 3289 6.859420 ATAATGAAACGCAAAAGCCTTTTT 57.141 29.167 0.00 0.00 36.97 1.94
2999 3298 4.598406 CAAAAGCCTTTTTGCGTTTTCT 57.402 36.364 0.00 0.00 44.59 2.52
3000 3299 4.577639 CAAAAGCCTTTTTGCGTTTTCTC 58.422 39.130 0.00 0.00 44.59 2.87
3001 3300 3.518634 AAGCCTTTTTGCGTTTTCTCA 57.481 38.095 0.00 0.00 36.02 3.27
3002 3301 3.518634 AGCCTTTTTGCGTTTTCTCAA 57.481 38.095 0.00 0.00 36.02 3.02
3003 3302 3.855858 AGCCTTTTTGCGTTTTCTCAAA 58.144 36.364 0.00 0.00 33.49 2.69
3004 3303 4.249661 AGCCTTTTTGCGTTTTCTCAAAA 58.750 34.783 0.00 0.00 40.97 2.44
3005 3304 4.693095 AGCCTTTTTGCGTTTTCTCAAAAA 59.307 33.333 10.97 10.97 45.75 1.94
3040 3339 1.694150 TCTTGGTTCTCAGTGGGACAG 59.306 52.381 0.00 0.00 41.80 3.51
3085 3384 2.232696 GTGGGAAACTTGGTGTTGTTGT 59.767 45.455 0.00 0.00 39.13 3.32
3112 3411 3.625764 GCTAGATCTGAGCTATACCGAGG 59.374 52.174 5.18 0.00 36.96 4.63
3288 3587 6.176183 TCCAAAAGGAATTGCAAAGTTTCAA 58.824 32.000 1.71 3.89 0.00 2.69
3299 3598 6.241207 TGCAAAGTTTCAACAGCTCTATAC 57.759 37.500 0.00 0.00 0.00 1.47
3369 3668 1.611673 CGATGCCTCCCCAATATCCAC 60.612 57.143 0.00 0.00 0.00 4.02
3519 3824 3.007398 AGACTGGTGTGGTTGAGAGAATC 59.993 47.826 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 438 2.467826 CGCTAGCTTCTTGGCTGCC 61.468 63.158 12.87 12.87 43.01 4.85
170 442 1.790387 CACACGCTAGCTTCTTGGC 59.210 57.895 13.93 0.00 0.00 4.52
183 455 1.859427 ATCTTGCTTGGCTGCACACG 61.859 55.000 0.50 0.00 43.20 4.49
343 623 9.123902 TGTGGAGACATCTGAATAAATAAATGG 57.876 33.333 0.00 0.00 46.14 3.16
413 693 1.601759 ACAGCATATGATGGCGGCC 60.602 57.895 23.87 13.32 35.42 6.13
425 705 1.985473 TGAACAAAGGAGCACAGCAT 58.015 45.000 0.00 0.00 0.00 3.79
562 842 7.230849 TGTGTGGCAGATTTTCTAAATCAAT 57.769 32.000 13.00 0.00 0.00 2.57
571 851 4.504097 GTGAAACTTGTGTGGCAGATTTTC 59.496 41.667 0.00 0.00 0.00 2.29
620 904 7.552687 AGAATAAATAAGGCTCGTCACATTTCA 59.447 33.333 0.00 0.00 0.00 2.69
621 905 7.920738 AGAATAAATAAGGCTCGTCACATTTC 58.079 34.615 0.00 0.00 0.00 2.17
622 906 7.865706 AGAATAAATAAGGCTCGTCACATTT 57.134 32.000 0.00 0.00 0.00 2.32
1143 1430 1.591059 CAGAGCTTCCGCATCCTCG 60.591 63.158 0.00 0.00 39.10 4.63
1188 1475 3.126001 TCACTCATGTTCTTCCACCAC 57.874 47.619 0.00 0.00 0.00 4.16
1278 1565 3.373439 GCTGATTGAAACAGAGCGATCTT 59.627 43.478 0.00 0.00 37.54 2.40
1427 1714 4.821805 CACTTGTTACCTGGAACTGTTGAT 59.178 41.667 0.00 0.00 0.00 2.57
1599 1886 2.915463 CTGAGCTAACGTTGTCTTACCG 59.085 50.000 11.99 0.00 0.00 4.02
1761 2048 2.745515 AAAGTGGTAGAAGCTCGGTC 57.254 50.000 0.00 0.00 0.00 4.79
1902 2193 3.963428 ACATACAGGTCTCTTGTGGTC 57.037 47.619 0.00 0.00 0.00 4.02
1918 2209 5.780984 TGCATGCATTTCTGACAAAACATA 58.219 33.333 18.46 0.00 0.00 2.29
2364 2655 7.727181 TGATTAGCTCAAGGTAATACTCTTCC 58.273 38.462 12.97 2.40 45.43 3.46
2418 2709 7.211573 TCGTTGACTCACCTTTATCTACAAAA 58.788 34.615 0.00 0.00 0.00 2.44
2470 2761 6.159398 AGGGAGTGATCCTTTGTCAGATATTT 59.841 38.462 0.00 0.00 0.00 1.40
2517 2808 1.066002 CGCAGATTCGGCATGGAATTT 59.934 47.619 9.44 0.00 36.79 1.82
2582 2881 4.480386 CTCCTCAAGCACTTGTTTTCTC 57.520 45.455 10.05 0.00 41.16 2.87
2684 2983 0.038599 TGTGCATCAGCTTGGGTCAT 59.961 50.000 0.00 0.00 42.74 3.06
2685 2984 0.178995 TTGTGCATCAGCTTGGGTCA 60.179 50.000 0.00 0.00 42.74 4.02
2686 2985 0.961019 TTTGTGCATCAGCTTGGGTC 59.039 50.000 0.00 0.00 42.74 4.46
2687 2986 0.963962 CTTTGTGCATCAGCTTGGGT 59.036 50.000 0.00 0.00 42.74 4.51
2688 2987 0.245539 CCTTTGTGCATCAGCTTGGG 59.754 55.000 0.00 0.00 42.74 4.12
2689 2988 1.068055 GTCCTTTGTGCATCAGCTTGG 60.068 52.381 0.00 0.00 42.74 3.61
2690 2989 1.884579 AGTCCTTTGTGCATCAGCTTG 59.115 47.619 0.00 0.00 42.74 4.01
2691 2990 2.283145 AGTCCTTTGTGCATCAGCTT 57.717 45.000 0.00 0.00 42.74 3.74
2692 2991 2.283145 AAGTCCTTTGTGCATCAGCT 57.717 45.000 0.00 0.00 42.74 4.24
2693 2992 2.813754 TGTAAGTCCTTTGTGCATCAGC 59.186 45.455 0.00 0.00 42.57 4.26
2694 2993 4.095483 GGATGTAAGTCCTTTGTGCATCAG 59.905 45.833 0.00 0.00 35.32 2.90
2695 2994 4.009675 GGATGTAAGTCCTTTGTGCATCA 58.990 43.478 0.00 0.00 35.32 3.07
2696 2995 3.063997 CGGATGTAAGTCCTTTGTGCATC 59.936 47.826 0.00 0.00 36.07 3.91
2697 2996 3.009723 CGGATGTAAGTCCTTTGTGCAT 58.990 45.455 0.00 0.00 36.07 3.96
2698 2997 2.422597 CGGATGTAAGTCCTTTGTGCA 58.577 47.619 0.00 0.00 36.07 4.57
2699 2998 1.130561 GCGGATGTAAGTCCTTTGTGC 59.869 52.381 0.00 0.00 36.07 4.57
2700 2999 1.393539 CGCGGATGTAAGTCCTTTGTG 59.606 52.381 0.00 0.00 36.07 3.33
2701 3000 1.274167 TCGCGGATGTAAGTCCTTTGT 59.726 47.619 6.13 0.00 36.07 2.83
2702 3001 1.659098 GTCGCGGATGTAAGTCCTTTG 59.341 52.381 6.13 0.00 36.07 2.77
2703 3002 1.734707 CGTCGCGGATGTAAGTCCTTT 60.735 52.381 6.13 0.00 36.07 3.11
2704 3003 0.179145 CGTCGCGGATGTAAGTCCTT 60.179 55.000 6.13 0.00 36.07 3.36
2705 3004 1.432251 CGTCGCGGATGTAAGTCCT 59.568 57.895 6.13 0.00 36.07 3.85
2706 3005 2.228914 GCGTCGCGGATGTAAGTCC 61.229 63.158 6.13 0.00 34.82 3.85
2707 3006 1.226603 AGCGTCGCGGATGTAAGTC 60.227 57.895 12.30 0.00 0.00 3.01
2708 3007 1.516386 CAGCGTCGCGGATGTAAGT 60.516 57.895 12.26 0.00 0.00 2.24
2709 3008 2.860628 GCAGCGTCGCGGATGTAAG 61.861 63.158 21.72 2.09 0.00 2.34
2710 3009 2.883730 GCAGCGTCGCGGATGTAA 60.884 61.111 21.72 0.00 0.00 2.41
2711 3010 3.822192 AGCAGCGTCGCGGATGTA 61.822 61.111 21.72 0.00 36.85 2.29
2714 3013 4.212913 ATCAGCAGCGTCGCGGAT 62.213 61.111 21.72 12.51 41.21 4.18
2715 3014 4.854784 GATCAGCAGCGTCGCGGA 62.855 66.667 21.72 13.18 40.40 5.54
2718 3017 4.521062 AGGGATCAGCAGCGTCGC 62.521 66.667 9.80 9.80 0.00 5.19
2719 3018 2.169789 CAAGGGATCAGCAGCGTCG 61.170 63.158 0.00 0.00 0.00 5.12
2720 3019 1.817099 CCAAGGGATCAGCAGCGTC 60.817 63.158 0.00 0.00 0.00 5.19
2721 3020 1.630126 ATCCAAGGGATCAGCAGCGT 61.630 55.000 0.00 0.00 38.09 5.07
2722 3021 1.147824 ATCCAAGGGATCAGCAGCG 59.852 57.895 0.00 0.00 38.09 5.18
2723 3022 0.182061 TCATCCAAGGGATCAGCAGC 59.818 55.000 0.00 0.00 40.98 5.25
2724 3023 1.476471 GGTCATCCAAGGGATCAGCAG 60.476 57.143 0.00 0.00 40.98 4.24
2725 3024 0.548031 GGTCATCCAAGGGATCAGCA 59.452 55.000 0.00 0.00 40.98 4.41
2726 3025 0.842635 AGGTCATCCAAGGGATCAGC 59.157 55.000 0.00 0.00 40.98 4.26
2727 3026 1.142465 CCAGGTCATCCAAGGGATCAG 59.858 57.143 0.00 0.00 40.98 2.90
2728 3027 1.216064 CCAGGTCATCCAAGGGATCA 58.784 55.000 0.00 0.00 40.98 2.92
2729 3028 1.511613 TCCAGGTCATCCAAGGGATC 58.488 55.000 0.00 0.00 40.98 3.36
2730 3029 1.849039 CTTCCAGGTCATCCAAGGGAT 59.151 52.381 0.00 0.00 44.21 3.85
2731 3030 1.289160 CTTCCAGGTCATCCAAGGGA 58.711 55.000 0.00 0.00 35.55 4.20
2732 3031 0.394899 GCTTCCAGGTCATCCAAGGG 60.395 60.000 0.00 0.00 35.89 3.95
2733 3032 0.329261 TGCTTCCAGGTCATCCAAGG 59.671 55.000 0.00 0.00 35.89 3.61
2734 3033 2.295885 GATGCTTCCAGGTCATCCAAG 58.704 52.381 7.47 0.00 35.89 3.61
2735 3034 1.407299 CGATGCTTCCAGGTCATCCAA 60.407 52.381 11.11 0.00 34.63 3.53
2736 3035 0.178767 CGATGCTTCCAGGTCATCCA 59.821 55.000 11.11 0.00 34.63 3.41
2737 3036 1.162800 GCGATGCTTCCAGGTCATCC 61.163 60.000 11.11 0.00 34.63 3.51
2738 3037 0.462581 TGCGATGCTTCCAGGTCATC 60.463 55.000 0.00 8.25 34.74 2.92
2739 3038 0.035152 TTGCGATGCTTCCAGGTCAT 60.035 50.000 0.00 0.00 0.00 3.06
2740 3039 0.955428 GTTGCGATGCTTCCAGGTCA 60.955 55.000 0.00 0.00 0.00 4.02
2741 3040 1.796796 GTTGCGATGCTTCCAGGTC 59.203 57.895 0.00 0.00 0.00 3.85
2742 3041 2.034879 CGTTGCGATGCTTCCAGGT 61.035 57.895 0.00 0.00 0.00 4.00
2743 3042 1.091771 ATCGTTGCGATGCTTCCAGG 61.092 55.000 3.08 0.00 45.24 4.45
2744 3043 0.729116 AATCGTTGCGATGCTTCCAG 59.271 50.000 4.75 0.00 46.30 3.86
2745 3044 0.447406 CAATCGTTGCGATGCTTCCA 59.553 50.000 4.75 0.00 46.30 3.53
2746 3045 0.447801 ACAATCGTTGCGATGCTTCC 59.552 50.000 4.75 0.00 46.30 3.46
2747 3046 1.135972 ACACAATCGTTGCGATGCTTC 60.136 47.619 4.75 0.00 46.30 3.86
2748 3047 0.874390 ACACAATCGTTGCGATGCTT 59.126 45.000 4.75 0.00 46.30 3.91
2749 3048 0.443869 GACACAATCGTTGCGATGCT 59.556 50.000 4.75 0.00 46.30 3.79
2750 3049 0.443869 AGACACAATCGTTGCGATGC 59.556 50.000 4.75 0.00 46.30 3.91
2751 3050 2.157474 TGAAGACACAATCGTTGCGATG 59.843 45.455 4.75 2.87 46.30 3.84
2753 3052 1.859383 TGAAGACACAATCGTTGCGA 58.141 45.000 0.00 0.00 41.13 5.10
2754 3053 2.661504 TTGAAGACACAATCGTTGCG 57.338 45.000 0.00 0.00 0.00 4.85
2755 3054 2.658325 GCATTGAAGACACAATCGTTGC 59.342 45.455 0.00 0.00 38.25 4.17
2756 3055 3.887741 TGCATTGAAGACACAATCGTTG 58.112 40.909 0.00 0.00 38.25 4.10
2757 3056 3.610114 GCTGCATTGAAGACACAATCGTT 60.610 43.478 0.00 0.00 38.25 3.85
2758 3057 2.095567 GCTGCATTGAAGACACAATCGT 60.096 45.455 0.00 0.00 38.25 3.73
2759 3058 2.512885 GCTGCATTGAAGACACAATCG 58.487 47.619 0.00 0.00 38.25 3.34
2760 3059 2.229543 TGGCTGCATTGAAGACACAATC 59.770 45.455 0.00 0.00 38.25 2.67
2761 3060 2.241160 TGGCTGCATTGAAGACACAAT 58.759 42.857 0.00 0.00 40.50 2.71
2762 3061 1.689984 TGGCTGCATTGAAGACACAA 58.310 45.000 0.00 0.00 0.00 3.33
2763 3062 3.418022 TGGCTGCATTGAAGACACA 57.582 47.368 0.00 0.00 0.00 3.72
2764 3063 3.780925 GTGGCTGCATTGAAGACAC 57.219 52.632 15.00 15.00 45.96 3.67
2765 3064 0.895100 GGGTGGCTGCATTGAAGACA 60.895 55.000 0.00 0.00 0.00 3.41
2766 3065 1.598701 GGGGTGGCTGCATTGAAGAC 61.599 60.000 0.50 0.00 0.00 3.01
2767 3066 1.304381 GGGGTGGCTGCATTGAAGA 60.304 57.895 0.50 0.00 0.00 2.87
2768 3067 0.901580 AAGGGGTGGCTGCATTGAAG 60.902 55.000 0.50 0.00 0.00 3.02
2769 3068 0.899717 GAAGGGGTGGCTGCATTGAA 60.900 55.000 0.50 0.00 0.00 2.69
2770 3069 1.304381 GAAGGGGTGGCTGCATTGA 60.304 57.895 0.50 0.00 0.00 2.57
2771 3070 2.703798 CGAAGGGGTGGCTGCATTG 61.704 63.158 0.50 0.00 0.00 2.82
2772 3071 2.361610 CGAAGGGGTGGCTGCATT 60.362 61.111 0.50 0.00 0.00 3.56
2773 3072 3.329889 TCGAAGGGGTGGCTGCAT 61.330 61.111 0.50 0.00 0.00 3.96
2774 3073 4.329545 GTCGAAGGGGTGGCTGCA 62.330 66.667 0.50 0.00 0.00 4.41
2775 3074 2.579684 CTAGTCGAAGGGGTGGCTGC 62.580 65.000 0.00 0.00 0.00 5.25
2776 3075 1.517832 CTAGTCGAAGGGGTGGCTG 59.482 63.158 0.00 0.00 0.00 4.85
2777 3076 2.359967 GCTAGTCGAAGGGGTGGCT 61.360 63.158 0.00 0.00 0.00 4.75
2778 3077 2.187163 GCTAGTCGAAGGGGTGGC 59.813 66.667 0.00 0.00 0.00 5.01
2779 3078 2.280823 GACGCTAGTCGAAGGGGTGG 62.281 65.000 12.46 0.00 41.67 4.61
2780 3079 1.139095 GACGCTAGTCGAAGGGGTG 59.861 63.158 12.46 0.00 41.67 4.61
2781 3080 3.600843 GACGCTAGTCGAAGGGGT 58.399 61.111 12.46 4.87 41.67 4.95
2790 3089 1.873591 CTTTGCAACCAAGACGCTAGT 59.126 47.619 0.00 0.00 31.52 2.57
2791 3090 2.143122 TCTTTGCAACCAAGACGCTAG 58.857 47.619 0.00 0.00 31.52 3.42
2792 3091 2.248280 TCTTTGCAACCAAGACGCTA 57.752 45.000 0.00 0.00 31.52 4.26
2793 3092 1.537202 GATCTTTGCAACCAAGACGCT 59.463 47.619 0.00 0.00 31.52 5.07
2794 3093 1.266718 TGATCTTTGCAACCAAGACGC 59.733 47.619 0.00 0.00 31.52 5.19
2795 3094 3.624326 TTGATCTTTGCAACCAAGACG 57.376 42.857 0.00 0.00 31.52 4.18
2796 3095 5.186996 TCTTTGATCTTTGCAACCAAGAC 57.813 39.130 0.00 0.00 31.52 3.01
2797 3096 5.593909 TCTTCTTTGATCTTTGCAACCAAGA 59.406 36.000 0.00 0.00 31.52 3.02
2798 3097 5.835257 TCTTCTTTGATCTTTGCAACCAAG 58.165 37.500 0.00 0.00 31.52 3.61
2799 3098 5.850557 TCTTCTTTGATCTTTGCAACCAA 57.149 34.783 0.00 0.00 0.00 3.67
2800 3099 5.737063 GCTTCTTCTTTGATCTTTGCAACCA 60.737 40.000 0.00 0.00 0.00 3.67
2801 3100 4.683320 GCTTCTTCTTTGATCTTTGCAACC 59.317 41.667 0.00 0.00 0.00 3.77
2802 3101 5.401674 CAGCTTCTTCTTTGATCTTTGCAAC 59.598 40.000 0.00 0.00 0.00 4.17
2803 3102 5.526115 CAGCTTCTTCTTTGATCTTTGCAA 58.474 37.500 0.00 0.00 0.00 4.08
2804 3103 4.558095 GCAGCTTCTTCTTTGATCTTTGCA 60.558 41.667 0.00 0.00 0.00 4.08
2805 3104 3.919197 GCAGCTTCTTCTTTGATCTTTGC 59.081 43.478 0.00 0.00 0.00 3.68
2806 3105 4.156915 CGCAGCTTCTTCTTTGATCTTTG 58.843 43.478 0.00 0.00 0.00 2.77
2807 3106 4.416505 CGCAGCTTCTTCTTTGATCTTT 57.583 40.909 0.00 0.00 0.00 2.52
2848 3147 3.362399 ATGACACGCAGGCCTCGAG 62.362 63.158 25.01 20.45 0.00 4.04
2849 3148 3.356639 GATGACACGCAGGCCTCGA 62.357 63.158 25.01 8.38 0.00 4.04
2850 3149 2.887568 GATGACACGCAGGCCTCG 60.888 66.667 19.02 19.02 0.00 4.63
2851 3150 2.512515 GGATGACACGCAGGCCTC 60.513 66.667 0.00 0.00 0.00 4.70
2852 3151 3.005539 AGGATGACACGCAGGCCT 61.006 61.111 0.00 0.00 32.24 5.19
2853 3152 2.512515 GAGGATGACACGCAGGCC 60.513 66.667 0.00 0.00 0.00 5.19
2854 3153 2.512515 GGAGGATGACACGCAGGC 60.513 66.667 0.00 0.00 0.00 4.85
2855 3154 2.187946 GGGAGGATGACACGCAGG 59.812 66.667 0.00 0.00 0.00 4.85
2856 3155 1.448540 GTGGGAGGATGACACGCAG 60.449 63.158 0.00 0.00 0.00 5.18
2857 3156 2.171209 CTGTGGGAGGATGACACGCA 62.171 60.000 0.00 0.00 37.92 5.24
2858 3157 1.448540 CTGTGGGAGGATGACACGC 60.449 63.158 0.00 0.00 37.92 5.34
2859 3158 0.108615 GTCTGTGGGAGGATGACACG 60.109 60.000 0.00 0.00 37.92 4.49
2860 3159 0.250513 GGTCTGTGGGAGGATGACAC 59.749 60.000 0.00 0.00 35.75 3.67
2861 3160 0.117140 AGGTCTGTGGGAGGATGACA 59.883 55.000 0.00 0.00 0.00 3.58
2862 3161 0.539051 CAGGTCTGTGGGAGGATGAC 59.461 60.000 0.00 0.00 0.00 3.06
2863 3162 0.618680 CCAGGTCTGTGGGAGGATGA 60.619 60.000 0.00 0.00 33.46 2.92
2864 3163 1.910722 CCAGGTCTGTGGGAGGATG 59.089 63.158 0.00 0.00 33.46 3.51
2865 3164 4.488303 CCAGGTCTGTGGGAGGAT 57.512 61.111 0.00 0.00 33.46 3.24
2871 3170 1.200760 TGGACATCCCAGGTCTGTGG 61.201 60.000 0.00 0.00 40.82 4.17
2872 3171 2.376063 TGGACATCCCAGGTCTGTG 58.624 57.895 0.00 0.00 40.82 3.66
2873 3172 4.998839 TGGACATCCCAGGTCTGT 57.001 55.556 0.00 0.00 40.82 3.41
2880 3179 4.927267 AATAACTTCAGTGGACATCCCA 57.073 40.909 0.00 0.00 44.25 4.37
2881 3180 5.476945 ACAAAATAACTTCAGTGGACATCCC 59.523 40.000 0.00 0.00 34.29 3.85
2882 3181 6.016276 ACACAAAATAACTTCAGTGGACATCC 60.016 38.462 0.00 0.00 30.90 3.51
2883 3182 6.970484 ACACAAAATAACTTCAGTGGACATC 58.030 36.000 0.00 0.00 30.90 3.06
2884 3183 6.959639 ACACAAAATAACTTCAGTGGACAT 57.040 33.333 0.00 0.00 30.90 3.06
2885 3184 6.767524 AACACAAAATAACTTCAGTGGACA 57.232 33.333 0.00 0.00 30.90 4.02
2886 3185 7.480810 AGAAACACAAAATAACTTCAGTGGAC 58.519 34.615 0.00 0.00 30.90 4.02
2887 3186 7.466725 CGAGAAACACAAAATAACTTCAGTGGA 60.467 37.037 0.00 0.00 30.90 4.02
2888 3187 6.632834 CGAGAAACACAAAATAACTTCAGTGG 59.367 38.462 0.00 0.00 30.90 4.00
2889 3188 6.140737 GCGAGAAACACAAAATAACTTCAGTG 59.859 38.462 0.00 0.00 0.00 3.66
2890 3189 6.199393 GCGAGAAACACAAAATAACTTCAGT 58.801 36.000 0.00 0.00 0.00 3.41
2891 3190 5.625311 GGCGAGAAACACAAAATAACTTCAG 59.375 40.000 0.00 0.00 0.00 3.02
2892 3191 5.298276 AGGCGAGAAACACAAAATAACTTCA 59.702 36.000 0.00 0.00 0.00 3.02
2893 3192 5.625311 CAGGCGAGAAACACAAAATAACTTC 59.375 40.000 0.00 0.00 0.00 3.01
2894 3193 5.067283 ACAGGCGAGAAACACAAAATAACTT 59.933 36.000 0.00 0.00 0.00 2.66
2895 3194 4.578928 ACAGGCGAGAAACACAAAATAACT 59.421 37.500 0.00 0.00 0.00 2.24
2896 3195 4.855531 ACAGGCGAGAAACACAAAATAAC 58.144 39.130 0.00 0.00 0.00 1.89
2897 3196 6.621316 TTACAGGCGAGAAACACAAAATAA 57.379 33.333 0.00 0.00 0.00 1.40
2898 3197 6.348950 CCATTACAGGCGAGAAACACAAAATA 60.349 38.462 0.00 0.00 0.00 1.40
2899 3198 5.460646 CATTACAGGCGAGAAACACAAAAT 58.539 37.500 0.00 0.00 0.00 1.82
2900 3199 4.261405 CCATTACAGGCGAGAAACACAAAA 60.261 41.667 0.00 0.00 0.00 2.44
2901 3200 3.252215 CCATTACAGGCGAGAAACACAAA 59.748 43.478 0.00 0.00 0.00 2.83
2902 3201 2.811431 CCATTACAGGCGAGAAACACAA 59.189 45.455 0.00 0.00 0.00 3.33
2903 3202 2.224426 ACCATTACAGGCGAGAAACACA 60.224 45.455 0.00 0.00 0.00 3.72
2904 3203 2.159627 CACCATTACAGGCGAGAAACAC 59.840 50.000 0.00 0.00 0.00 3.32
2905 3204 2.422597 CACCATTACAGGCGAGAAACA 58.577 47.619 0.00 0.00 0.00 2.83
2906 3205 1.130561 GCACCATTACAGGCGAGAAAC 59.869 52.381 0.00 0.00 0.00 2.78
2907 3206 1.448985 GCACCATTACAGGCGAGAAA 58.551 50.000 0.00 0.00 0.00 2.52
2908 3207 0.392461 GGCACCATTACAGGCGAGAA 60.392 55.000 0.00 0.00 0.00 2.87
2909 3208 1.220749 GGCACCATTACAGGCGAGA 59.779 57.895 0.00 0.00 0.00 4.04
2910 3209 0.811616 GAGGCACCATTACAGGCGAG 60.812 60.000 0.00 0.00 0.00 5.03
2911 3210 1.220749 GAGGCACCATTACAGGCGA 59.779 57.895 0.00 0.00 0.00 5.54
2912 3211 1.819632 GGAGGCACCATTACAGGCG 60.820 63.158 0.00 0.00 38.79 5.52
2913 3212 0.837272 TAGGAGGCACCATTACAGGC 59.163 55.000 3.18 0.00 42.04 4.85
2914 3213 1.417890 CCTAGGAGGCACCATTACAGG 59.582 57.143 1.05 0.00 42.04 4.00
2915 3214 2.366916 CTCCTAGGAGGCACCATTACAG 59.633 54.545 28.68 1.14 42.04 2.74
2916 3215 2.398588 CTCCTAGGAGGCACCATTACA 58.601 52.381 28.68 0.00 42.04 2.41
2929 3228 7.507616 AGAGATAGTTTGTTACATCCTCCTAGG 59.492 40.741 0.82 0.82 36.46 3.02
2930 3229 8.472007 AGAGATAGTTTGTTACATCCTCCTAG 57.528 38.462 0.00 0.00 0.00 3.02
2931 3230 8.282982 AGAGAGATAGTTTGTTACATCCTCCTA 58.717 37.037 0.00 0.00 0.00 2.94
2932 3231 7.129425 AGAGAGATAGTTTGTTACATCCTCCT 58.871 38.462 0.00 0.00 0.00 3.69
2933 3232 7.286775 AGAGAGAGATAGTTTGTTACATCCTCC 59.713 40.741 0.00 0.00 0.00 4.30
2934 3233 8.232913 AGAGAGAGATAGTTTGTTACATCCTC 57.767 38.462 0.00 0.00 0.00 3.71
2935 3234 8.602472 AAGAGAGAGATAGTTTGTTACATCCT 57.398 34.615 0.00 0.00 0.00 3.24
2936 3235 9.660180 AAAAGAGAGAGATAGTTTGTTACATCC 57.340 33.333 0.00 0.00 0.00 3.51
2952 3251 9.643652 GCGTTTCATTATATTGAAAAGAGAGAG 57.356 33.333 26.27 13.76 44.71 3.20
2953 3252 9.161629 TGCGTTTCATTATATTGAAAAGAGAGA 57.838 29.630 26.27 12.49 44.71 3.10
2954 3253 9.773328 TTGCGTTTCATTATATTGAAAAGAGAG 57.227 29.630 26.27 15.95 44.71 3.20
2958 3257 9.464248 GCTTTTGCGTTTCATTATATTGAAAAG 57.536 29.630 21.56 21.56 43.49 2.27
2979 3278 4.249661 TGAGAAAACGCAAAAAGGCTTTT 58.750 34.783 19.14 19.14 36.89 2.27
2980 3279 3.855858 TGAGAAAACGCAAAAAGGCTTT 58.144 36.364 6.68 6.68 0.00 3.51
2981 3280 3.518634 TGAGAAAACGCAAAAAGGCTT 57.481 38.095 0.00 0.00 0.00 4.35
2982 3281 3.518634 TTGAGAAAACGCAAAAAGGCT 57.481 38.095 0.00 0.00 0.00 4.58
2983 3282 4.591998 TTTTGAGAAAACGCAAAAAGGC 57.408 36.364 8.77 0.00 40.02 4.35
3004 3303 8.575649 AGAACCAAGACACGGATATTATTTTT 57.424 30.769 0.00 0.00 0.00 1.94
3005 3304 7.827236 TGAGAACCAAGACACGGATATTATTTT 59.173 33.333 0.00 0.00 0.00 1.82
3006 3305 7.335627 TGAGAACCAAGACACGGATATTATTT 58.664 34.615 0.00 0.00 0.00 1.40
3007 3306 6.884832 TGAGAACCAAGACACGGATATTATT 58.115 36.000 0.00 0.00 0.00 1.40
3008 3307 6.098409 ACTGAGAACCAAGACACGGATATTAT 59.902 38.462 0.00 0.00 0.00 1.28
3009 3308 5.421056 ACTGAGAACCAAGACACGGATATTA 59.579 40.000 0.00 0.00 0.00 0.98
3010 3309 4.223032 ACTGAGAACCAAGACACGGATATT 59.777 41.667 0.00 0.00 0.00 1.28
3011 3310 3.769844 ACTGAGAACCAAGACACGGATAT 59.230 43.478 0.00 0.00 0.00 1.63
3012 3311 3.056821 CACTGAGAACCAAGACACGGATA 60.057 47.826 0.00 0.00 0.00 2.59
3013 3312 1.971357 ACTGAGAACCAAGACACGGAT 59.029 47.619 0.00 0.00 0.00 4.18
3014 3313 1.068588 CACTGAGAACCAAGACACGGA 59.931 52.381 0.00 0.00 0.00 4.69
3015 3314 1.502231 CACTGAGAACCAAGACACGG 58.498 55.000 0.00 0.00 0.00 4.94
3016 3315 1.502231 CCACTGAGAACCAAGACACG 58.498 55.000 0.00 0.00 0.00 4.49
3017 3316 1.416401 TCCCACTGAGAACCAAGACAC 59.584 52.381 0.00 0.00 0.00 3.67
3018 3317 1.416401 GTCCCACTGAGAACCAAGACA 59.584 52.381 0.00 0.00 0.00 3.41
3019 3318 1.416401 TGTCCCACTGAGAACCAAGAC 59.584 52.381 0.00 0.00 0.00 3.01
3020 3319 1.694150 CTGTCCCACTGAGAACCAAGA 59.306 52.381 0.00 0.00 0.00 3.02
3021 3320 1.271054 CCTGTCCCACTGAGAACCAAG 60.271 57.143 0.00 0.00 0.00 3.61
3022 3321 0.764890 CCTGTCCCACTGAGAACCAA 59.235 55.000 0.00 0.00 0.00 3.67
3023 3322 1.768684 GCCTGTCCCACTGAGAACCA 61.769 60.000 0.00 0.00 0.00 3.67
3024 3323 1.003233 GCCTGTCCCACTGAGAACC 60.003 63.158 0.00 0.00 0.00 3.62
3025 3324 0.326264 ATGCCTGTCCCACTGAGAAC 59.674 55.000 0.00 0.00 0.00 3.01
3040 3339 2.171448 AGTCTGGTATGTCCTTGATGCC 59.829 50.000 0.00 0.00 37.07 4.40
3085 3384 4.524714 GGTATAGCTCAGATCTAGCAACCA 59.475 45.833 21.73 10.78 42.62 3.67
3112 3411 3.249320 GTGGACTCCGGAAGTTTGTTAAC 59.751 47.826 5.23 0.00 38.74 2.01
3153 3452 3.600388 ACCAAGCAAAGAGAGGTATTCG 58.400 45.455 0.00 0.00 0.00 3.34
3288 3587 5.530243 ACTCCTTTTAGGGTATAGAGCTGT 58.470 41.667 0.00 0.00 35.59 4.40
3299 3598 4.691216 CACTCTCGAAAACTCCTTTTAGGG 59.309 45.833 0.00 0.00 35.59 3.53
3369 3668 1.293498 CTTCTGGACCCACAGACGG 59.707 63.158 0.00 0.00 46.44 4.79
3420 3719 7.619698 TCCCTTAGATTATGACTGTTCTTCAGA 59.380 37.037 1.79 0.00 46.27 3.27
3441 3740 1.421646 CAACCCAGTCTCAGTTCCCTT 59.578 52.381 0.00 0.00 0.00 3.95
3595 3900 1.419012 TGAGCATAGCCATTCTGGGAG 59.581 52.381 0.00 0.00 38.19 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.