Multiple sequence alignment - TraesCS3B01G087500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G087500 chr3B 100.000 3173 0 0 1 3173 55492709 55489537 0.000000e+00 5860.0
1 TraesCS3B01G087500 chr3B 97.468 2330 57 1 846 3173 811555970 811553641 0.000000e+00 3975.0
2 TraesCS3B01G087500 chr3B 85.235 2323 335 6 849 3166 790654659 790652340 0.000000e+00 2383.0
3 TraesCS3B01G087500 chr3B 84.949 2332 338 10 849 3171 663078747 663076420 0.000000e+00 2350.0
4 TraesCS3B01G087500 chr3B 84.312 2333 349 14 847 3173 125580148 125582469 0.000000e+00 2265.0
5 TraesCS3B01G087500 chr2B 96.661 2336 71 6 842 3173 82854146 82856478 0.000000e+00 3875.0
6 TraesCS3B01G087500 chr2B 85.073 2338 343 5 839 3171 547055365 547053029 0.000000e+00 2379.0
7 TraesCS3B01G087500 chr3A 87.876 2326 274 7 849 3171 697071661 697069341 0.000000e+00 2726.0
8 TraesCS3B01G087500 chr3A 87.473 463 42 10 143 604 45577895 45577448 1.300000e-143 520.0
9 TraesCS3B01G087500 chr3A 91.111 45 4 0 634 678 618583867 618583823 9.500000e-06 62.1
10 TraesCS3B01G087500 chr7B 96.506 1431 48 2 1740 3170 64624647 64626075 0.000000e+00 2364.0
11 TraesCS3B01G087500 chr7B 92.857 42 3 0 636 677 618114561 618114602 9.500000e-06 62.1
12 TraesCS3B01G087500 chr2D 82.065 2325 405 9 843 3162 71929809 71927492 0.000000e+00 1973.0
13 TraesCS3B01G087500 chr2D 93.023 43 3 0 636 678 347474879 347474837 2.640000e-06 63.9
14 TraesCS3B01G087500 chr6B 90.909 990 90 0 1015 2004 658725463 658726452 0.000000e+00 1330.0
15 TraesCS3B01G087500 chr3D 87.987 616 43 8 1 604 33167475 33166879 0.000000e+00 699.0
16 TraesCS3B01G087500 chr3D 94.891 137 7 0 677 813 33166895 33166759 6.890000e-52 215.0
17 TraesCS3B01G087500 chr3D 86.957 92 9 2 677 767 33167145 33167056 2.010000e-17 100.0
18 TraesCS3B01G087500 chr4B 95.455 44 2 0 633 676 51836765 51836722 1.580000e-08 71.3
19 TraesCS3B01G087500 chr5B 93.333 45 3 0 640 684 324309560 324309516 2.040000e-07 67.6
20 TraesCS3B01G087500 chrUn 95.000 40 2 0 636 675 377235103 377235142 2.640000e-06 63.9
21 TraesCS3B01G087500 chr1D 95.000 40 2 0 636 675 461503880 461503841 2.640000e-06 63.9
22 TraesCS3B01G087500 chr1D 95.000 40 2 0 636 675 461556959 461556998 2.640000e-06 63.9
23 TraesCS3B01G087500 chr7D 92.857 42 3 0 636 677 585543303 585543262 9.500000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G087500 chr3B 55489537 55492709 3172 True 5860 5860 100.000 1 3173 1 chr3B.!!$R1 3172
1 TraesCS3B01G087500 chr3B 811553641 811555970 2329 True 3975 3975 97.468 846 3173 1 chr3B.!!$R4 2327
2 TraesCS3B01G087500 chr3B 790652340 790654659 2319 True 2383 2383 85.235 849 3166 1 chr3B.!!$R3 2317
3 TraesCS3B01G087500 chr3B 663076420 663078747 2327 True 2350 2350 84.949 849 3171 1 chr3B.!!$R2 2322
4 TraesCS3B01G087500 chr3B 125580148 125582469 2321 False 2265 2265 84.312 847 3173 1 chr3B.!!$F1 2326
5 TraesCS3B01G087500 chr2B 82854146 82856478 2332 False 3875 3875 96.661 842 3173 1 chr2B.!!$F1 2331
6 TraesCS3B01G087500 chr2B 547053029 547055365 2336 True 2379 2379 85.073 839 3171 1 chr2B.!!$R1 2332
7 TraesCS3B01G087500 chr3A 697069341 697071661 2320 True 2726 2726 87.876 849 3171 1 chr3A.!!$R3 2322
8 TraesCS3B01G087500 chr7B 64624647 64626075 1428 False 2364 2364 96.506 1740 3170 1 chr7B.!!$F1 1430
9 TraesCS3B01G087500 chr2D 71927492 71929809 2317 True 1973 1973 82.065 843 3162 1 chr2D.!!$R1 2319
10 TraesCS3B01G087500 chr6B 658725463 658726452 989 False 1330 1330 90.909 1015 2004 1 chr6B.!!$F1 989
11 TraesCS3B01G087500 chr3D 33166759 33167475 716 True 338 699 89.945 1 813 3 chr3D.!!$R1 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 491 0.026674 CACATTGCGTCATAGTGCCG 59.973 55.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2367 2630 0.535102 CCTCCCAGAACAAAGCACGT 60.535 55.0 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.032681 GCTCCAACGCCCAAGTCT 59.967 61.111 0.00 0.00 0.00 3.24
29 30 0.537188 AACGCCCAAGTCTCGATCAT 59.463 50.000 0.00 0.00 0.00 2.45
52 53 4.071961 TCGATTTCCGAATCATCCATGT 57.928 40.909 0.00 0.00 45.43 3.21
53 54 5.208463 TCGATTTCCGAATCATCCATGTA 57.792 39.130 0.00 0.00 45.43 2.29
54 55 5.230182 TCGATTTCCGAATCATCCATGTAG 58.770 41.667 0.00 0.00 45.43 2.74
55 56 4.991056 CGATTTCCGAATCATCCATGTAGT 59.009 41.667 0.00 0.00 41.43 2.73
56 57 6.015772 TCGATTTCCGAATCATCCATGTAGTA 60.016 38.462 0.00 0.00 45.43 1.82
57 58 6.645003 CGATTTCCGAATCATCCATGTAGTAA 59.355 38.462 0.00 0.00 41.43 2.24
58 59 7.359264 CGATTTCCGAATCATCCATGTAGTAAC 60.359 40.741 0.00 0.00 41.43 2.50
59 60 5.209818 TCCGAATCATCCATGTAGTAACC 57.790 43.478 0.00 0.00 0.00 2.85
60 61 4.899457 TCCGAATCATCCATGTAGTAACCT 59.101 41.667 0.00 0.00 0.00 3.50
61 62 5.365605 TCCGAATCATCCATGTAGTAACCTT 59.634 40.000 0.00 0.00 0.00 3.50
62 63 6.055588 CCGAATCATCCATGTAGTAACCTTT 58.944 40.000 0.00 0.00 0.00 3.11
63 64 6.542370 CCGAATCATCCATGTAGTAACCTTTT 59.458 38.462 0.00 0.00 0.00 2.27
64 65 7.067008 CCGAATCATCCATGTAGTAACCTTTTT 59.933 37.037 0.00 0.00 0.00 1.94
84 85 6.594788 TTTTTCTAGCCATCAAATCAAGCT 57.405 33.333 0.00 0.00 37.58 3.74
85 86 7.701539 TTTTTCTAGCCATCAAATCAAGCTA 57.298 32.000 0.00 0.00 35.03 3.32
86 87 7.701539 TTTTCTAGCCATCAAATCAAGCTAA 57.298 32.000 0.00 0.00 35.74 3.09
87 88 6.683974 TTCTAGCCATCAAATCAAGCTAAC 57.316 37.500 0.00 0.00 35.74 2.34
88 89 5.126067 TCTAGCCATCAAATCAAGCTAACC 58.874 41.667 0.00 0.00 35.74 2.85
89 90 3.700538 AGCCATCAAATCAAGCTAACCA 58.299 40.909 0.00 0.00 30.46 3.67
90 91 4.284178 AGCCATCAAATCAAGCTAACCAT 58.716 39.130 0.00 0.00 30.46 3.55
91 92 4.340381 AGCCATCAAATCAAGCTAACCATC 59.660 41.667 0.00 0.00 30.46 3.51
92 93 4.500375 GCCATCAAATCAAGCTAACCATCC 60.500 45.833 0.00 0.00 0.00 3.51
93 94 4.891756 CCATCAAATCAAGCTAACCATCCT 59.108 41.667 0.00 0.00 0.00 3.24
94 95 5.221185 CCATCAAATCAAGCTAACCATCCTG 60.221 44.000 0.00 0.00 0.00 3.86
95 96 4.922206 TCAAATCAAGCTAACCATCCTGT 58.078 39.130 0.00 0.00 0.00 4.00
96 97 4.943705 TCAAATCAAGCTAACCATCCTGTC 59.056 41.667 0.00 0.00 0.00 3.51
97 98 4.574674 AATCAAGCTAACCATCCTGTCA 57.425 40.909 0.00 0.00 0.00 3.58
98 99 4.574674 ATCAAGCTAACCATCCTGTCAA 57.425 40.909 0.00 0.00 0.00 3.18
99 100 4.365514 TCAAGCTAACCATCCTGTCAAA 57.634 40.909 0.00 0.00 0.00 2.69
100 101 4.724399 TCAAGCTAACCATCCTGTCAAAA 58.276 39.130 0.00 0.00 0.00 2.44
101 102 4.761739 TCAAGCTAACCATCCTGTCAAAAG 59.238 41.667 0.00 0.00 0.00 2.27
102 103 4.373156 AGCTAACCATCCTGTCAAAAGT 57.627 40.909 0.00 0.00 0.00 2.66
103 104 5.499004 AGCTAACCATCCTGTCAAAAGTA 57.501 39.130 0.00 0.00 0.00 2.24
104 105 5.876357 AGCTAACCATCCTGTCAAAAGTAA 58.124 37.500 0.00 0.00 0.00 2.24
105 106 6.303839 AGCTAACCATCCTGTCAAAAGTAAA 58.696 36.000 0.00 0.00 0.00 2.01
106 107 6.948309 AGCTAACCATCCTGTCAAAAGTAAAT 59.052 34.615 0.00 0.00 0.00 1.40
107 108 8.107095 AGCTAACCATCCTGTCAAAAGTAAATA 58.893 33.333 0.00 0.00 0.00 1.40
108 109 8.736244 GCTAACCATCCTGTCAAAAGTAAATAA 58.264 33.333 0.00 0.00 0.00 1.40
112 113 9.308000 ACCATCCTGTCAAAAGTAAATAAATCA 57.692 29.630 0.00 0.00 0.00 2.57
115 116 9.860898 ATCCTGTCAAAAGTAAATAAATCAAGC 57.139 29.630 0.00 0.00 0.00 4.01
116 117 8.303876 TCCTGTCAAAAGTAAATAAATCAAGCC 58.696 33.333 0.00 0.00 0.00 4.35
117 118 7.273381 CCTGTCAAAAGTAAATAAATCAAGCCG 59.727 37.037 0.00 0.00 0.00 5.52
118 119 7.877003 TGTCAAAAGTAAATAAATCAAGCCGA 58.123 30.769 0.00 0.00 0.00 5.54
119 120 7.806014 TGTCAAAAGTAAATAAATCAAGCCGAC 59.194 33.333 0.00 0.00 0.00 4.79
120 121 7.272731 GTCAAAAGTAAATAAATCAAGCCGACC 59.727 37.037 0.00 0.00 0.00 4.79
121 122 6.827586 AAAGTAAATAAATCAAGCCGACCA 57.172 33.333 0.00 0.00 0.00 4.02
122 123 7.404671 AAAGTAAATAAATCAAGCCGACCAT 57.595 32.000 0.00 0.00 0.00 3.55
123 124 6.377327 AGTAAATAAATCAAGCCGACCATG 57.623 37.500 0.00 0.00 0.00 3.66
124 125 6.119536 AGTAAATAAATCAAGCCGACCATGA 58.880 36.000 0.00 0.00 0.00 3.07
125 126 6.772716 AGTAAATAAATCAAGCCGACCATGAT 59.227 34.615 0.00 0.00 35.39 2.45
126 127 5.443185 AATAAATCAAGCCGACCATGATG 57.557 39.130 0.00 0.00 34.21 3.07
127 128 2.715749 AATCAAGCCGACCATGATGA 57.284 45.000 0.00 0.00 34.21 2.92
128 129 2.945080 ATCAAGCCGACCATGATGAT 57.055 45.000 0.00 0.00 32.77 2.45
129 130 2.245159 TCAAGCCGACCATGATGATC 57.755 50.000 0.00 0.00 0.00 2.92
130 131 1.485895 TCAAGCCGACCATGATGATCA 59.514 47.619 0.00 0.00 0.00 2.92
131 132 2.093021 TCAAGCCGACCATGATGATCAA 60.093 45.455 0.00 0.00 0.00 2.57
132 133 2.251409 AGCCGACCATGATGATCAAG 57.749 50.000 0.00 0.00 0.00 3.02
133 134 0.590195 GCCGACCATGATGATCAAGC 59.410 55.000 0.00 0.00 0.00 4.01
134 135 1.813092 GCCGACCATGATGATCAAGCT 60.813 52.381 0.00 0.00 0.00 3.74
135 136 2.569059 CCGACCATGATGATCAAGCTT 58.431 47.619 0.00 0.00 0.00 3.74
136 137 2.289820 CCGACCATGATGATCAAGCTTG 59.710 50.000 20.81 20.81 0.00 4.01
137 138 3.200483 CGACCATGATGATCAAGCTTGA 58.800 45.455 30.23 30.23 42.14 3.02
147 148 2.672961 TCAAGCTTGATAGTGGTCGG 57.327 50.000 25.16 0.00 31.01 4.79
148 149 1.899814 TCAAGCTTGATAGTGGTCGGT 59.100 47.619 25.16 0.00 31.01 4.69
149 150 2.301870 TCAAGCTTGATAGTGGTCGGTT 59.698 45.455 25.16 0.00 31.01 4.44
150 151 2.386661 AGCTTGATAGTGGTCGGTTG 57.613 50.000 0.00 0.00 0.00 3.77
151 152 0.727398 GCTTGATAGTGGTCGGTTGC 59.273 55.000 0.00 0.00 0.00 4.17
152 153 0.999406 CTTGATAGTGGTCGGTTGCG 59.001 55.000 0.00 0.00 0.00 4.85
153 154 0.390603 TTGATAGTGGTCGGTTGCGG 60.391 55.000 0.00 0.00 0.00 5.69
154 155 1.217244 GATAGTGGTCGGTTGCGGT 59.783 57.895 0.00 0.00 0.00 5.68
155 156 1.079405 ATAGTGGTCGGTTGCGGTG 60.079 57.895 0.00 0.00 0.00 4.94
156 157 1.537814 ATAGTGGTCGGTTGCGGTGA 61.538 55.000 0.00 0.00 0.00 4.02
157 158 1.746322 TAGTGGTCGGTTGCGGTGAA 61.746 55.000 0.00 0.00 0.00 3.18
158 159 2.280524 TGGTCGGTTGCGGTGAAG 60.281 61.111 0.00 0.00 0.00 3.02
159 160 2.280592 GGTCGGTTGCGGTGAAGT 60.281 61.111 0.00 0.00 0.00 3.01
160 161 2.315386 GGTCGGTTGCGGTGAAGTC 61.315 63.158 0.00 0.00 0.00 3.01
161 162 2.355363 TCGGTTGCGGTGAAGTCG 60.355 61.111 0.00 0.00 0.00 4.18
162 163 3.411351 CGGTTGCGGTGAAGTCGG 61.411 66.667 0.00 0.00 0.00 4.79
163 164 2.029964 GGTTGCGGTGAAGTCGGA 59.970 61.111 0.00 0.00 0.00 4.55
164 165 2.027625 GGTTGCGGTGAAGTCGGAG 61.028 63.158 0.00 0.00 0.00 4.63
165 166 1.300697 GTTGCGGTGAAGTCGGAGT 60.301 57.895 0.00 0.00 0.00 3.85
166 167 0.878961 GTTGCGGTGAAGTCGGAGTT 60.879 55.000 0.00 0.00 0.00 3.01
167 168 0.878523 TTGCGGTGAAGTCGGAGTTG 60.879 55.000 2.13 0.00 0.00 3.16
168 169 2.668280 GCGGTGAAGTCGGAGTTGC 61.668 63.158 2.13 0.00 0.00 4.17
169 170 1.006102 CGGTGAAGTCGGAGTTGCT 60.006 57.895 2.13 0.00 0.00 3.91
170 171 1.284982 CGGTGAAGTCGGAGTTGCTG 61.285 60.000 2.13 0.00 0.00 4.41
171 172 0.951040 GGTGAAGTCGGAGTTGCTGG 60.951 60.000 2.13 0.00 0.00 4.85
172 173 0.033504 GTGAAGTCGGAGTTGCTGGA 59.966 55.000 2.13 0.00 0.00 3.86
173 174 0.976641 TGAAGTCGGAGTTGCTGGAT 59.023 50.000 2.13 0.00 0.00 3.41
174 175 1.338105 TGAAGTCGGAGTTGCTGGATG 60.338 52.381 2.13 0.00 0.00 3.51
175 176 0.036010 AAGTCGGAGTTGCTGGATGG 60.036 55.000 0.00 0.00 0.00 3.51
176 177 0.904865 AGTCGGAGTTGCTGGATGGA 60.905 55.000 0.00 0.00 0.00 3.41
177 178 0.460987 GTCGGAGTTGCTGGATGGAG 60.461 60.000 0.00 0.00 0.00 3.86
178 179 1.153289 CGGAGTTGCTGGATGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
179 180 1.617018 CGGAGTTGCTGGATGGAGGA 61.617 60.000 0.00 0.00 0.00 3.71
180 181 0.107459 GGAGTTGCTGGATGGAGGAC 60.107 60.000 0.00 0.00 0.00 3.85
181 182 0.615331 GAGTTGCTGGATGGAGGACA 59.385 55.000 0.00 0.00 0.00 4.02
182 183 1.211457 GAGTTGCTGGATGGAGGACAT 59.789 52.381 0.00 0.00 44.18 3.06
189 190 3.616086 ATGGAGGACATCACGCGA 58.384 55.556 15.93 0.00 33.53 5.87
190 191 1.141881 ATGGAGGACATCACGCGAC 59.858 57.895 15.93 0.00 33.53 5.19
191 192 2.579787 GGAGGACATCACGCGACG 60.580 66.667 15.93 2.89 0.00 5.12
192 193 2.483745 GAGGACATCACGCGACGA 59.516 61.111 15.93 9.65 0.00 4.20
193 194 1.064296 GAGGACATCACGCGACGAT 59.936 57.895 15.93 11.87 0.00 3.73
194 195 1.202973 GAGGACATCACGCGACGATG 61.203 60.000 28.89 28.89 44.77 3.84
195 196 1.226575 GGACATCACGCGACGATGA 60.227 57.895 33.74 20.92 42.39 2.92
196 197 1.472276 GGACATCACGCGACGATGAC 61.472 60.000 33.74 29.08 42.39 3.06
197 198 0.523546 GACATCACGCGACGATGACT 60.524 55.000 33.74 20.89 42.39 3.41
198 199 0.109272 ACATCACGCGACGATGACTT 60.109 50.000 33.74 18.59 42.39 3.01
199 200 0.992072 CATCACGCGACGATGACTTT 59.008 50.000 27.66 1.21 42.39 2.66
200 201 1.390123 CATCACGCGACGATGACTTTT 59.610 47.619 27.66 0.89 42.39 2.27
201 202 0.781787 TCACGCGACGATGACTTTTG 59.218 50.000 15.93 0.00 0.00 2.44
202 203 0.785708 CACGCGACGATGACTTTTGC 60.786 55.000 15.93 0.00 0.00 3.68
203 204 1.575132 CGCGACGATGACTTTTGCG 60.575 57.895 0.00 0.00 38.04 4.85
204 205 1.225745 GCGACGATGACTTTTGCGG 60.226 57.895 0.00 0.00 0.00 5.69
205 206 1.623081 GCGACGATGACTTTTGCGGA 61.623 55.000 0.00 0.00 0.00 5.54
206 207 0.366871 CGACGATGACTTTTGCGGAG 59.633 55.000 0.00 0.00 0.00 4.63
207 208 1.710013 GACGATGACTTTTGCGGAGA 58.290 50.000 0.00 0.00 0.00 3.71
208 209 2.271800 GACGATGACTTTTGCGGAGAT 58.728 47.619 0.00 0.00 0.00 2.75
209 210 2.002586 ACGATGACTTTTGCGGAGATG 58.997 47.619 0.00 0.00 0.00 2.90
210 211 2.002586 CGATGACTTTTGCGGAGATGT 58.997 47.619 0.00 0.00 0.00 3.06
211 212 2.416547 CGATGACTTTTGCGGAGATGTT 59.583 45.455 0.00 0.00 0.00 2.71
212 213 3.120199 CGATGACTTTTGCGGAGATGTTT 60.120 43.478 0.00 0.00 0.00 2.83
213 214 4.613622 CGATGACTTTTGCGGAGATGTTTT 60.614 41.667 0.00 0.00 0.00 2.43
214 215 4.223320 TGACTTTTGCGGAGATGTTTTC 57.777 40.909 0.00 0.00 0.00 2.29
215 216 3.882888 TGACTTTTGCGGAGATGTTTTCT 59.117 39.130 0.00 0.00 37.41 2.52
226 227 2.417933 AGATGTTTTCTCAGCGATGTGC 59.582 45.455 0.00 0.00 46.98 4.57
236 237 3.118454 CGATGTGCGCCGGAGTTT 61.118 61.111 5.05 0.00 0.00 2.66
237 238 2.480555 GATGTGCGCCGGAGTTTG 59.519 61.111 5.05 0.00 0.00 2.93
238 239 2.281484 ATGTGCGCCGGAGTTTGT 60.281 55.556 5.05 0.00 0.00 2.83
239 240 2.513065 GATGTGCGCCGGAGTTTGTG 62.513 60.000 5.05 0.00 0.00 3.33
240 241 3.276846 GTGCGCCGGAGTTTGTGT 61.277 61.111 5.05 0.00 0.00 3.72
241 242 1.957186 GTGCGCCGGAGTTTGTGTA 60.957 57.895 5.05 0.00 0.00 2.90
242 243 1.666553 TGCGCCGGAGTTTGTGTAG 60.667 57.895 5.05 0.00 0.00 2.74
243 244 1.666872 GCGCCGGAGTTTGTGTAGT 60.667 57.895 5.05 0.00 0.00 2.73
244 245 1.897398 GCGCCGGAGTTTGTGTAGTG 61.897 60.000 5.05 0.00 0.00 2.74
245 246 0.319211 CGCCGGAGTTTGTGTAGTGA 60.319 55.000 5.05 0.00 0.00 3.41
246 247 1.145803 GCCGGAGTTTGTGTAGTGAC 58.854 55.000 5.05 0.00 0.00 3.67
247 248 1.792006 CCGGAGTTTGTGTAGTGACC 58.208 55.000 0.00 0.00 0.00 4.02
248 249 1.415374 CGGAGTTTGTGTAGTGACCG 58.585 55.000 0.00 0.00 0.00 4.79
249 250 1.001048 CGGAGTTTGTGTAGTGACCGA 60.001 52.381 0.00 0.00 41.30 4.69
250 251 2.544277 CGGAGTTTGTGTAGTGACCGAA 60.544 50.000 0.00 0.00 41.30 4.30
251 252 2.798847 GGAGTTTGTGTAGTGACCGAAC 59.201 50.000 0.00 0.00 0.00 3.95
252 253 3.492137 GGAGTTTGTGTAGTGACCGAACT 60.492 47.826 0.00 0.00 35.15 3.01
253 254 4.261741 GGAGTTTGTGTAGTGACCGAACTA 60.262 45.833 0.00 0.00 33.81 2.24
254 255 5.464030 AGTTTGTGTAGTGACCGAACTAT 57.536 39.130 0.00 0.00 35.20 2.12
255 256 6.349611 GGAGTTTGTGTAGTGACCGAACTATA 60.350 42.308 0.00 0.00 35.20 1.31
256 257 6.618811 AGTTTGTGTAGTGACCGAACTATAG 58.381 40.000 0.00 0.00 35.20 1.31
257 258 6.208204 AGTTTGTGTAGTGACCGAACTATAGT 59.792 38.462 0.00 0.00 35.20 2.12
258 259 5.808042 TGTGTAGTGACCGAACTATAGTC 57.192 43.478 5.70 0.00 35.20 2.59
259 260 5.247862 TGTGTAGTGACCGAACTATAGTCA 58.752 41.667 5.70 0.00 38.17 3.41
266 267 6.525578 TGACCGAACTATAGTCACTGATTT 57.474 37.500 5.70 0.00 35.67 2.17
267 268 6.931838 TGACCGAACTATAGTCACTGATTTT 58.068 36.000 5.70 0.00 35.67 1.82
268 269 7.383687 TGACCGAACTATAGTCACTGATTTTT 58.616 34.615 5.70 0.00 35.67 1.94
269 270 7.330946 TGACCGAACTATAGTCACTGATTTTTG 59.669 37.037 5.70 0.00 35.67 2.44
270 271 6.092259 ACCGAACTATAGTCACTGATTTTTGC 59.908 38.462 5.70 0.00 0.00 3.68
271 272 6.456988 CCGAACTATAGTCACTGATTTTTGCC 60.457 42.308 5.70 0.00 0.00 4.52
272 273 6.092122 CGAACTATAGTCACTGATTTTTGCCA 59.908 38.462 5.70 0.00 0.00 4.92
273 274 6.992063 ACTATAGTCACTGATTTTTGCCAG 57.008 37.500 0.00 0.00 36.53 4.85
274 275 6.476378 ACTATAGTCACTGATTTTTGCCAGT 58.524 36.000 0.00 0.00 43.73 4.00
327 328 9.950680 TTTTCAATTAAATCAATAGATCGAGGC 57.049 29.630 0.00 0.00 31.90 4.70
328 329 8.675705 TTCAATTAAATCAATAGATCGAGGCA 57.324 30.769 0.00 0.00 31.90 4.75
329 330 8.675705 TCAATTAAATCAATAGATCGAGGCAA 57.324 30.769 0.00 0.00 31.90 4.52
330 331 9.119418 TCAATTAAATCAATAGATCGAGGCAAA 57.881 29.630 0.00 0.00 31.90 3.68
331 332 9.734620 CAATTAAATCAATAGATCGAGGCAAAA 57.265 29.630 0.00 0.00 31.90 2.44
332 333 9.956720 AATTAAATCAATAGATCGAGGCAAAAG 57.043 29.630 0.00 0.00 31.90 2.27
333 334 6.382869 AAATCAATAGATCGAGGCAAAAGG 57.617 37.500 0.00 0.00 31.90 3.11
334 335 3.206150 TCAATAGATCGAGGCAAAAGGC 58.794 45.455 0.00 0.00 43.74 4.35
335 336 3.118261 TCAATAGATCGAGGCAAAAGGCT 60.118 43.478 0.00 0.00 44.01 4.58
336 337 2.315925 TAGATCGAGGCAAAAGGCTG 57.684 50.000 0.00 0.00 44.01 4.85
337 338 0.615331 AGATCGAGGCAAAAGGCTGA 59.385 50.000 0.00 0.00 44.01 4.26
338 339 1.003580 AGATCGAGGCAAAAGGCTGAA 59.996 47.619 0.00 0.00 44.01 3.02
339 340 2.019984 GATCGAGGCAAAAGGCTGAAT 58.980 47.619 0.00 0.00 44.01 2.57
340 341 2.779755 TCGAGGCAAAAGGCTGAATA 57.220 45.000 0.00 0.00 44.01 1.75
341 342 3.066291 TCGAGGCAAAAGGCTGAATAA 57.934 42.857 0.00 0.00 44.01 1.40
342 343 3.417101 TCGAGGCAAAAGGCTGAATAAA 58.583 40.909 0.00 0.00 44.01 1.40
343 344 4.016444 TCGAGGCAAAAGGCTGAATAAAT 58.984 39.130 0.00 0.00 44.01 1.40
344 345 5.189928 TCGAGGCAAAAGGCTGAATAAATA 58.810 37.500 0.00 0.00 44.01 1.40
345 346 5.650266 TCGAGGCAAAAGGCTGAATAAATAA 59.350 36.000 0.00 0.00 44.01 1.40
346 347 6.151985 TCGAGGCAAAAGGCTGAATAAATAAA 59.848 34.615 0.00 0.00 44.01 1.40
347 348 6.980397 CGAGGCAAAAGGCTGAATAAATAAAT 59.020 34.615 0.00 0.00 44.01 1.40
348 349 7.043192 CGAGGCAAAAGGCTGAATAAATAAATG 60.043 37.037 0.00 0.00 44.01 2.32
349 350 7.049754 AGGCAAAAGGCTGAATAAATAAATGG 58.950 34.615 0.00 0.00 44.01 3.16
350 351 7.047271 GGCAAAAGGCTGAATAAATAAATGGA 58.953 34.615 0.00 0.00 44.01 3.41
351 352 7.552330 GGCAAAAGGCTGAATAAATAAATGGAA 59.448 33.333 0.00 0.00 44.01 3.53
352 353 8.390354 GCAAAAGGCTGAATAAATAAATGGAAC 58.610 33.333 0.00 0.00 40.25 3.62
368 369 4.998671 TGGAACACAATTGAGAAAAGCA 57.001 36.364 13.59 0.00 0.00 3.91
369 370 5.336150 TGGAACACAATTGAGAAAAGCAA 57.664 34.783 13.59 0.00 0.00 3.91
370 371 5.728471 TGGAACACAATTGAGAAAAGCAAA 58.272 33.333 13.59 0.00 0.00 3.68
371 372 6.169094 TGGAACACAATTGAGAAAAGCAAAA 58.831 32.000 13.59 0.00 0.00 2.44
372 373 6.652481 TGGAACACAATTGAGAAAAGCAAAAA 59.348 30.769 13.59 0.00 0.00 1.94
373 374 6.960992 GGAACACAATTGAGAAAAGCAAAAAC 59.039 34.615 13.59 0.00 0.00 2.43
374 375 7.360776 GGAACACAATTGAGAAAAGCAAAAACA 60.361 33.333 13.59 0.00 0.00 2.83
375 376 6.830736 ACACAATTGAGAAAAGCAAAAACAC 58.169 32.000 13.59 0.00 0.00 3.32
376 377 6.426328 ACACAATTGAGAAAAGCAAAAACACA 59.574 30.769 13.59 0.00 0.00 3.72
377 378 7.119553 ACACAATTGAGAAAAGCAAAAACACAT 59.880 29.630 13.59 0.00 0.00 3.21
378 379 8.602328 CACAATTGAGAAAAGCAAAAACACATA 58.398 29.630 13.59 0.00 0.00 2.29
379 380 8.819974 ACAATTGAGAAAAGCAAAAACACATAG 58.180 29.630 13.59 0.00 0.00 2.23
380 381 9.033481 CAATTGAGAAAAGCAAAAACACATAGA 57.967 29.630 0.00 0.00 0.00 1.98
381 382 9.598517 AATTGAGAAAAGCAAAAACACATAGAA 57.401 25.926 0.00 0.00 0.00 2.10
382 383 9.768662 ATTGAGAAAAGCAAAAACACATAGAAT 57.231 25.926 0.00 0.00 0.00 2.40
383 384 9.598517 TTGAGAAAAGCAAAAACACATAGAATT 57.401 25.926 0.00 0.00 0.00 2.17
413 414 9.565090 TTAGATATAACTAGGCTAACAAGTCGA 57.435 33.333 0.00 0.00 0.00 4.20
414 415 8.101654 AGATATAACTAGGCTAACAAGTCGAG 57.898 38.462 0.00 0.00 0.00 4.04
415 416 2.943449 ACTAGGCTAACAAGTCGAGC 57.057 50.000 0.00 0.00 35.39 5.03
423 424 4.872664 GCTAACAAGTCGAGCCATATAGT 58.127 43.478 0.00 0.00 0.00 2.12
424 425 4.681942 GCTAACAAGTCGAGCCATATAGTG 59.318 45.833 0.00 0.00 0.00 2.74
425 426 3.099267 ACAAGTCGAGCCATATAGTGC 57.901 47.619 0.00 0.00 0.00 4.40
426 427 2.430694 ACAAGTCGAGCCATATAGTGCA 59.569 45.455 0.00 0.00 0.00 4.57
427 428 2.797156 CAAGTCGAGCCATATAGTGCAC 59.203 50.000 9.40 9.40 0.00 4.57
428 429 1.341531 AGTCGAGCCATATAGTGCACC 59.658 52.381 14.63 0.00 0.00 5.01
429 430 0.679505 TCGAGCCATATAGTGCACCC 59.320 55.000 14.63 0.00 0.00 4.61
430 431 0.667487 CGAGCCATATAGTGCACCCG 60.667 60.000 14.63 0.00 0.00 5.28
431 432 0.951040 GAGCCATATAGTGCACCCGC 60.951 60.000 14.63 6.27 39.24 6.13
432 433 1.966451 GCCATATAGTGCACCCGCC 60.966 63.158 14.63 0.00 37.32 6.13
433 434 1.449782 CCATATAGTGCACCCGCCA 59.550 57.895 14.63 0.00 37.32 5.69
434 435 0.179032 CCATATAGTGCACCCGCCAA 60.179 55.000 14.63 0.00 37.32 4.52
435 436 0.944386 CATATAGTGCACCCGCCAAC 59.056 55.000 14.63 0.00 37.32 3.77
436 437 0.544223 ATATAGTGCACCCGCCAACA 59.456 50.000 14.63 0.00 37.32 3.33
437 438 0.325272 TATAGTGCACCCGCCAACAA 59.675 50.000 14.63 0.00 37.32 2.83
438 439 0.538516 ATAGTGCACCCGCCAACAAA 60.539 50.000 14.63 0.00 37.32 2.83
439 440 0.752009 TAGTGCACCCGCCAACAAAA 60.752 50.000 14.63 0.00 37.32 2.44
440 441 1.591327 GTGCACCCGCCAACAAAAG 60.591 57.895 5.22 0.00 37.32 2.27
441 442 2.055042 TGCACCCGCCAACAAAAGT 61.055 52.632 0.00 0.00 37.32 2.66
442 443 0.752009 TGCACCCGCCAACAAAAGTA 60.752 50.000 0.00 0.00 37.32 2.24
443 444 0.601057 GCACCCGCCAACAAAAGTAT 59.399 50.000 0.00 0.00 0.00 2.12
444 445 1.668628 GCACCCGCCAACAAAAGTATG 60.669 52.381 0.00 0.00 0.00 2.39
445 446 1.067915 CACCCGCCAACAAAAGTATGG 60.068 52.381 0.00 0.00 37.29 2.74
446 447 1.253100 CCCGCCAACAAAAGTATGGT 58.747 50.000 0.00 0.00 36.57 3.55
447 448 1.067915 CCCGCCAACAAAAGTATGGTG 60.068 52.381 0.00 0.00 42.90 4.17
454 455 4.858935 CAACAAAAGTATGGTGGACAGTG 58.141 43.478 0.00 0.00 34.30 3.66
455 456 2.884639 ACAAAAGTATGGTGGACAGTGC 59.115 45.455 0.00 0.00 0.00 4.40
456 457 2.884012 CAAAAGTATGGTGGACAGTGCA 59.116 45.455 0.00 0.00 0.00 4.57
457 458 3.439857 AAAGTATGGTGGACAGTGCAT 57.560 42.857 0.00 0.00 0.00 3.96
458 459 3.439857 AAGTATGGTGGACAGTGCATT 57.560 42.857 0.00 0.00 0.00 3.56
459 460 3.439857 AGTATGGTGGACAGTGCATTT 57.560 42.857 0.00 0.00 0.00 2.32
460 461 3.347216 AGTATGGTGGACAGTGCATTTC 58.653 45.455 0.00 0.00 0.00 2.17
461 462 1.549203 ATGGTGGACAGTGCATTTCC 58.451 50.000 0.00 0.00 0.00 3.13
462 463 0.478072 TGGTGGACAGTGCATTTCCT 59.522 50.000 0.00 0.00 0.00 3.36
463 464 1.702401 TGGTGGACAGTGCATTTCCTA 59.298 47.619 0.00 0.00 0.00 2.94
464 465 2.308570 TGGTGGACAGTGCATTTCCTAT 59.691 45.455 0.00 0.00 0.00 2.57
465 466 3.245229 TGGTGGACAGTGCATTTCCTATT 60.245 43.478 0.00 0.00 0.00 1.73
466 467 3.763897 GGTGGACAGTGCATTTCCTATTT 59.236 43.478 0.00 0.00 0.00 1.40
467 468 4.380867 GGTGGACAGTGCATTTCCTATTTG 60.381 45.833 0.00 0.00 0.00 2.32
468 469 4.458989 GTGGACAGTGCATTTCCTATTTGA 59.541 41.667 0.00 0.00 0.00 2.69
469 470 4.458989 TGGACAGTGCATTTCCTATTTGAC 59.541 41.667 11.30 0.00 0.00 3.18
470 471 4.437390 GGACAGTGCATTTCCTATTTGACG 60.437 45.833 0.00 0.00 0.00 4.35
471 472 3.119849 ACAGTGCATTTCCTATTTGACGC 60.120 43.478 0.00 0.00 0.00 5.19
472 473 3.081061 AGTGCATTTCCTATTTGACGCA 58.919 40.909 0.00 0.00 0.00 5.24
473 474 3.119849 AGTGCATTTCCTATTTGACGCAC 60.120 43.478 0.00 0.00 46.71 5.34
474 475 2.816672 TGCATTTCCTATTTGACGCACA 59.183 40.909 0.00 0.00 0.00 4.57
475 476 3.443329 TGCATTTCCTATTTGACGCACAT 59.557 39.130 0.00 0.00 0.00 3.21
476 477 4.082300 TGCATTTCCTATTTGACGCACATT 60.082 37.500 0.00 0.00 0.00 2.71
477 478 4.266029 GCATTTCCTATTTGACGCACATTG 59.734 41.667 0.00 0.00 0.00 2.82
478 479 3.485947 TTCCTATTTGACGCACATTGC 57.514 42.857 0.00 0.00 40.69 3.56
489 490 3.903876 CACATTGCGTCATAGTGCC 57.096 52.632 0.00 0.00 0.00 5.01
490 491 0.026674 CACATTGCGTCATAGTGCCG 59.973 55.000 0.00 0.00 0.00 5.69
491 492 1.089481 ACATTGCGTCATAGTGCCGG 61.089 55.000 0.00 0.00 0.00 6.13
492 493 2.180204 ATTGCGTCATAGTGCCGGC 61.180 57.895 22.73 22.73 0.00 6.13
493 494 4.830765 TGCGTCATAGTGCCGGCC 62.831 66.667 26.77 15.80 0.00 6.13
494 495 4.530857 GCGTCATAGTGCCGGCCT 62.531 66.667 26.77 22.36 0.00 5.19
495 496 2.186903 CGTCATAGTGCCGGCCTT 59.813 61.111 26.77 14.91 0.00 4.35
496 497 1.449601 CGTCATAGTGCCGGCCTTT 60.450 57.895 26.77 12.83 0.00 3.11
497 498 1.429148 CGTCATAGTGCCGGCCTTTC 61.429 60.000 26.77 11.91 0.00 2.62
498 499 1.153449 TCATAGTGCCGGCCTTTCG 60.153 57.895 26.77 10.14 0.00 3.46
499 500 2.513897 ATAGTGCCGGCCTTTCGC 60.514 61.111 26.77 7.04 0.00 4.70
500 501 3.323758 ATAGTGCCGGCCTTTCGCA 62.324 57.895 26.77 0.00 40.31 5.10
504 505 3.972276 GCCGGCCTTTCGCACAAA 61.972 61.111 18.11 0.00 40.31 2.83
505 506 2.255252 CCGGCCTTTCGCACAAAG 59.745 61.111 0.00 0.00 40.31 2.77
532 533 4.838152 GAGCGCTCGAATGGGCCA 62.838 66.667 23.61 9.61 45.35 5.36
533 534 4.845580 AGCGCTCGAATGGGCCAG 62.846 66.667 13.78 0.00 45.35 4.85
535 536 4.845580 CGCTCGAATGGGCCAGCT 62.846 66.667 13.78 0.33 0.00 4.24
536 537 2.505982 GCTCGAATGGGCCAGCTA 59.494 61.111 13.78 0.00 0.00 3.32
537 538 1.072159 GCTCGAATGGGCCAGCTAT 59.928 57.895 13.78 0.00 0.00 2.97
538 539 0.536006 GCTCGAATGGGCCAGCTATT 60.536 55.000 13.78 0.00 0.00 1.73
539 540 1.972872 CTCGAATGGGCCAGCTATTT 58.027 50.000 13.78 0.00 0.00 1.40
540 541 2.810400 GCTCGAATGGGCCAGCTATTTA 60.810 50.000 13.78 0.00 0.00 1.40
541 542 3.070018 CTCGAATGGGCCAGCTATTTAG 58.930 50.000 13.78 1.11 0.00 1.85
558 559 8.986929 GCTATTTAGCTATATGGGGATTCAAT 57.013 34.615 6.92 0.00 45.62 2.57
559 560 9.413734 GCTATTTAGCTATATGGGGATTCAATT 57.586 33.333 6.92 0.00 45.62 2.32
571 572 7.686438 TGGGGATTCAATTATCAATACATCG 57.314 36.000 0.00 0.00 0.00 3.84
572 573 7.457561 TGGGGATTCAATTATCAATACATCGA 58.542 34.615 0.00 0.00 0.00 3.59
573 574 7.607607 TGGGGATTCAATTATCAATACATCGAG 59.392 37.037 0.00 0.00 0.00 4.04
574 575 7.066284 GGGGATTCAATTATCAATACATCGAGG 59.934 40.741 0.00 0.00 0.00 4.63
575 576 7.607991 GGGATTCAATTATCAATACATCGAGGT 59.392 37.037 8.21 8.21 0.00 3.85
576 577 9.653287 GGATTCAATTATCAATACATCGAGGTA 57.347 33.333 12.89 12.89 0.00 3.08
637 638 8.925161 TTTAGAAGAAAATGGAACACAGTTTG 57.075 30.769 0.00 0.00 46.27 2.93
638 639 6.530019 AGAAGAAAATGGAACACAGTTTGT 57.470 33.333 0.00 0.00 46.27 2.83
639 640 7.639113 AGAAGAAAATGGAACACAGTTTGTA 57.361 32.000 0.00 0.00 46.27 2.41
640 641 8.062065 AGAAGAAAATGGAACACAGTTTGTAA 57.938 30.769 0.00 0.00 46.27 2.41
641 642 8.527810 AGAAGAAAATGGAACACAGTTTGTAAA 58.472 29.630 0.00 0.00 46.27 2.01
642 643 9.313118 GAAGAAAATGGAACACAGTTTGTAAAT 57.687 29.630 0.00 0.00 46.27 1.40
643 644 9.665719 AAGAAAATGGAACACAGTTTGTAAATT 57.334 25.926 0.00 0.00 46.27 1.82
644 645 9.665719 AGAAAATGGAACACAGTTTGTAAATTT 57.334 25.926 0.00 0.00 46.27 1.82
650 651 9.360093 TGGAACACAGTTTGTAAATTTTTGTAG 57.640 29.630 0.00 0.00 37.51 2.74
651 652 8.813282 GGAACACAGTTTGTAAATTTTTGTAGG 58.187 33.333 0.00 0.00 37.51 3.18
652 653 9.361315 GAACACAGTTTGTAAATTTTTGTAGGT 57.639 29.630 0.00 0.00 37.51 3.08
655 656 8.964150 CACAGTTTGTAAATTTTTGTAGGTAGC 58.036 33.333 0.00 0.00 0.00 3.58
656 657 8.909923 ACAGTTTGTAAATTTTTGTAGGTAGCT 58.090 29.630 0.00 0.00 0.00 3.32
657 658 9.744468 CAGTTTGTAAATTTTTGTAGGTAGCTT 57.256 29.630 0.00 0.00 0.00 3.74
704 705 2.023673 TGGAACACAGTTGAGCAAAGG 58.976 47.619 0.00 0.00 0.00 3.11
705 706 2.297701 GGAACACAGTTGAGCAAAGGA 58.702 47.619 0.00 0.00 0.00 3.36
706 707 2.291741 GGAACACAGTTGAGCAAAGGAG 59.708 50.000 0.00 0.00 0.00 3.69
707 708 3.206150 GAACACAGTTGAGCAAAGGAGA 58.794 45.455 0.00 0.00 0.00 3.71
708 709 3.281727 ACACAGTTGAGCAAAGGAGAA 57.718 42.857 0.00 0.00 0.00 2.87
709 710 3.620488 ACACAGTTGAGCAAAGGAGAAA 58.380 40.909 0.00 0.00 0.00 2.52
710 711 3.378427 ACACAGTTGAGCAAAGGAGAAAC 59.622 43.478 0.00 0.00 0.00 2.78
711 712 3.378112 CACAGTTGAGCAAAGGAGAAACA 59.622 43.478 0.00 0.00 0.00 2.83
712 713 3.378427 ACAGTTGAGCAAAGGAGAAACAC 59.622 43.478 0.00 0.00 0.00 3.32
713 714 3.378112 CAGTTGAGCAAAGGAGAAACACA 59.622 43.478 0.00 0.00 0.00 3.72
714 715 4.037208 CAGTTGAGCAAAGGAGAAACACAT 59.963 41.667 0.00 0.00 0.00 3.21
715 716 5.239306 CAGTTGAGCAAAGGAGAAACACATA 59.761 40.000 0.00 0.00 0.00 2.29
716 717 5.239525 AGTTGAGCAAAGGAGAAACACATAC 59.760 40.000 0.00 0.00 0.00 2.39
717 718 4.713553 TGAGCAAAGGAGAAACACATACA 58.286 39.130 0.00 0.00 0.00 2.29
718 719 5.129634 TGAGCAAAGGAGAAACACATACAA 58.870 37.500 0.00 0.00 0.00 2.41
719 720 5.769662 TGAGCAAAGGAGAAACACATACAAT 59.230 36.000 0.00 0.00 0.00 2.71
720 721 6.265196 TGAGCAAAGGAGAAACACATACAATT 59.735 34.615 0.00 0.00 0.00 2.32
721 722 7.446931 TGAGCAAAGGAGAAACACATACAATTA 59.553 33.333 0.00 0.00 0.00 1.40
722 723 8.353423 AGCAAAGGAGAAACACATACAATTAT 57.647 30.769 0.00 0.00 0.00 1.28
723 724 8.806146 AGCAAAGGAGAAACACATACAATTATT 58.194 29.630 0.00 0.00 0.00 1.40
724 725 9.423061 GCAAAGGAGAAACACATACAATTATTT 57.577 29.630 0.00 0.00 0.00 1.40
752 753 5.959618 ATAACCAACCTAACAAGTTGAGC 57.040 39.130 10.54 0.00 46.03 4.26
753 754 2.583143 ACCAACCTAACAAGTTGAGCC 58.417 47.619 10.54 0.00 46.03 4.70
754 755 1.535462 CCAACCTAACAAGTTGAGCCG 59.465 52.381 10.54 0.00 46.03 5.52
755 756 2.218603 CAACCTAACAAGTTGAGCCGT 58.781 47.619 10.54 0.00 46.03 5.68
756 757 3.395639 CAACCTAACAAGTTGAGCCGTA 58.604 45.455 10.54 0.00 46.03 4.02
757 758 3.314541 ACCTAACAAGTTGAGCCGTAG 57.685 47.619 10.54 3.19 0.00 3.51
758 759 2.895404 ACCTAACAAGTTGAGCCGTAGA 59.105 45.455 10.54 0.00 0.00 2.59
759 760 3.056749 ACCTAACAAGTTGAGCCGTAGAG 60.057 47.826 10.54 1.32 0.00 2.43
760 761 3.192844 CCTAACAAGTTGAGCCGTAGAGA 59.807 47.826 10.54 0.00 0.00 3.10
761 762 3.305398 AACAAGTTGAGCCGTAGAGAG 57.695 47.619 10.54 0.00 0.00 3.20
762 763 2.240279 ACAAGTTGAGCCGTAGAGAGT 58.760 47.619 10.54 0.00 0.00 3.24
763 764 2.029828 ACAAGTTGAGCCGTAGAGAGTG 60.030 50.000 10.54 0.00 0.00 3.51
764 765 0.528470 AGTTGAGCCGTAGAGAGTGC 59.472 55.000 0.00 0.00 0.00 4.40
765 766 0.243907 GTTGAGCCGTAGAGAGTGCA 59.756 55.000 0.00 0.00 0.00 4.57
766 767 0.243907 TTGAGCCGTAGAGAGTGCAC 59.756 55.000 9.40 9.40 0.00 4.57
767 768 1.226435 GAGCCGTAGAGAGTGCACG 60.226 63.158 12.01 0.00 35.50 5.34
768 769 1.924320 GAGCCGTAGAGAGTGCACGT 61.924 60.000 12.01 2.25 33.93 4.49
769 770 1.801913 GCCGTAGAGAGTGCACGTG 60.802 63.158 12.28 12.28 33.93 4.49
770 771 1.801913 CCGTAGAGAGTGCACGTGC 60.802 63.158 33.11 33.11 42.50 5.34
782 783 2.859870 GCACGTGCATTTCCAATTTG 57.140 45.000 34.52 0.00 41.59 2.32
783 784 2.402305 GCACGTGCATTTCCAATTTGA 58.598 42.857 34.52 0.00 41.59 2.69
784 785 2.155539 GCACGTGCATTTCCAATTTGAC 59.844 45.455 34.52 0.00 41.59 3.18
785 786 2.404693 CACGTGCATTTCCAATTTGACG 59.595 45.455 0.82 0.75 0.00 4.35
786 787 1.386412 CGTGCATTTCCAATTTGACGC 59.614 47.619 0.00 0.00 0.00 5.19
787 788 2.402305 GTGCATTTCCAATTTGACGCA 58.598 42.857 0.00 0.00 0.00 5.24
788 789 2.155539 GTGCATTTCCAATTTGACGCAC 59.844 45.455 10.35 10.35 41.32 5.34
789 790 2.223900 TGCATTTCCAATTTGACGCACA 60.224 40.909 0.00 0.00 0.00 4.57
790 791 2.995258 GCATTTCCAATTTGACGCACAT 59.005 40.909 0.00 0.00 0.00 3.21
791 792 3.432933 GCATTTCCAATTTGACGCACATT 59.567 39.130 0.00 0.00 0.00 2.71
792 793 4.624882 GCATTTCCAATTTGACGCACATTA 59.375 37.500 0.00 0.00 0.00 1.90
793 794 5.119898 GCATTTCCAATTTGACGCACATTAA 59.880 36.000 0.00 0.00 0.00 1.40
794 795 6.670452 GCATTTCCAATTTGACGCACATTAAG 60.670 38.462 0.00 0.00 0.00 1.85
795 796 5.446143 TTCCAATTTGACGCACATTAAGT 57.554 34.783 0.00 0.00 0.00 2.24
796 797 5.041951 TCCAATTTGACGCACATTAAGTC 57.958 39.130 0.00 0.00 35.61 3.01
797 798 4.517075 TCCAATTTGACGCACATTAAGTCA 59.483 37.500 0.00 0.00 42.36 3.41
803 804 4.843147 TGACGCACATTAAGTCAAAAGTG 58.157 39.130 0.00 0.00 41.30 3.16
804 805 4.334203 TGACGCACATTAAGTCAAAAGTGT 59.666 37.500 0.00 0.00 41.30 3.55
805 806 5.163703 TGACGCACATTAAGTCAAAAGTGTT 60.164 36.000 0.00 0.00 41.30 3.32
806 807 5.034152 ACGCACATTAAGTCAAAAGTGTTG 58.966 37.500 0.00 0.00 32.03 3.33
807 808 4.440758 CGCACATTAAGTCAAAAGTGTTGG 59.559 41.667 0.00 0.00 32.03 3.77
808 809 4.209080 GCACATTAAGTCAAAAGTGTTGGC 59.791 41.667 0.00 0.00 32.03 4.52
809 810 4.744631 CACATTAAGTCAAAAGTGTTGGCC 59.255 41.667 0.00 0.00 0.00 5.36
810 811 4.404073 ACATTAAGTCAAAAGTGTTGGCCA 59.596 37.500 0.00 0.00 0.00 5.36
811 812 5.070313 ACATTAAGTCAAAAGTGTTGGCCAT 59.930 36.000 6.09 0.00 0.00 4.40
812 813 5.606348 TTAAGTCAAAAGTGTTGGCCATT 57.394 34.783 6.09 0.00 0.00 3.16
813 814 3.457610 AGTCAAAAGTGTTGGCCATTG 57.542 42.857 6.09 7.29 0.00 2.82
814 815 2.765699 AGTCAAAAGTGTTGGCCATTGT 59.234 40.909 6.09 0.00 0.00 2.71
815 816 3.197549 AGTCAAAAGTGTTGGCCATTGTT 59.802 39.130 6.09 0.00 0.00 2.83
816 817 3.555547 GTCAAAAGTGTTGGCCATTGTTC 59.444 43.478 6.09 1.83 0.00 3.18
817 818 2.871633 CAAAAGTGTTGGCCATTGTTCC 59.128 45.455 6.09 0.00 0.00 3.62
818 819 2.086610 AAGTGTTGGCCATTGTTCCT 57.913 45.000 6.09 0.00 0.00 3.36
819 820 1.331214 AGTGTTGGCCATTGTTCCTG 58.669 50.000 6.09 0.00 0.00 3.86
820 821 1.133513 AGTGTTGGCCATTGTTCCTGA 60.134 47.619 6.09 0.00 0.00 3.86
821 822 1.000274 GTGTTGGCCATTGTTCCTGAC 60.000 52.381 6.09 0.00 0.00 3.51
822 823 1.327303 GTTGGCCATTGTTCCTGACA 58.673 50.000 6.09 0.00 36.19 3.58
832 833 2.766313 TGTTCCTGACAATGAAGGACG 58.234 47.619 8.53 0.00 42.35 4.79
833 834 2.367241 TGTTCCTGACAATGAAGGACGA 59.633 45.455 8.53 0.00 42.35 4.20
834 835 2.737252 GTTCCTGACAATGAAGGACGAC 59.263 50.000 8.53 3.39 42.35 4.34
835 836 1.967779 TCCTGACAATGAAGGACGACA 59.032 47.619 5.55 0.00 37.68 4.35
836 837 2.567169 TCCTGACAATGAAGGACGACAT 59.433 45.455 5.55 0.00 37.68 3.06
837 838 3.007940 TCCTGACAATGAAGGACGACATT 59.992 43.478 5.55 0.00 37.68 2.71
925 926 0.397564 GTTCTACCCGGACAACCCAA 59.602 55.000 0.73 0.00 34.14 4.12
1105 1111 3.751175 GGAACAATTGGATCTGAACGACA 59.249 43.478 10.83 0.00 0.00 4.35
1311 1317 3.380004 TCGTTGTCCAAGCATCTTGTTTT 59.620 39.130 5.92 0.00 0.00 2.43
2192 2441 7.392673 GCAATGAATATCCTATCATGGAACTGT 59.607 37.037 0.00 0.00 39.85 3.55
2351 2614 2.095059 GCTTTCATGGTGTTAGCAGTGG 60.095 50.000 0.00 0.00 0.00 4.00
2392 2655 1.344763 CTTTGTTCTGGGAGGAGACGT 59.655 52.381 0.00 0.00 0.00 4.34
2515 2778 0.865769 GCGTGTGGAAAATCGTCAGT 59.134 50.000 0.00 0.00 0.00 3.41
3085 3348 4.638421 TGTTGAAAGAGATTGAACGGTTGT 59.362 37.500 0.00 0.00 37.88 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 6.594788 AGCTTGATTTGATGGCTAGAAAAA 57.405 33.333 0.00 0.00 0.00 1.94
62 63 7.362920 GGTTAGCTTGATTTGATGGCTAGAAAA 60.363 37.037 0.00 0.00 36.94 2.29
63 64 6.095440 GGTTAGCTTGATTTGATGGCTAGAAA 59.905 38.462 0.00 0.00 36.94 2.52
64 65 5.590259 GGTTAGCTTGATTTGATGGCTAGAA 59.410 40.000 0.00 0.00 36.94 2.10
65 66 5.126067 GGTTAGCTTGATTTGATGGCTAGA 58.874 41.667 0.00 0.00 36.94 2.43
66 67 4.883585 TGGTTAGCTTGATTTGATGGCTAG 59.116 41.667 0.00 0.00 36.94 3.42
67 68 4.854173 TGGTTAGCTTGATTTGATGGCTA 58.146 39.130 0.00 0.00 34.88 3.93
68 69 3.700538 TGGTTAGCTTGATTTGATGGCT 58.299 40.909 0.00 0.00 37.08 4.75
69 70 4.500375 GGATGGTTAGCTTGATTTGATGGC 60.500 45.833 0.00 0.00 0.00 4.40
70 71 4.891756 AGGATGGTTAGCTTGATTTGATGG 59.108 41.667 0.00 0.00 0.00 3.51
71 72 5.359009 ACAGGATGGTTAGCTTGATTTGATG 59.641 40.000 0.00 0.00 43.62 3.07
72 73 5.513233 ACAGGATGGTTAGCTTGATTTGAT 58.487 37.500 0.00 0.00 43.62 2.57
73 74 4.922206 ACAGGATGGTTAGCTTGATTTGA 58.078 39.130 0.00 0.00 43.62 2.69
74 75 4.701651 TGACAGGATGGTTAGCTTGATTTG 59.298 41.667 0.00 0.00 43.62 2.32
75 76 4.922206 TGACAGGATGGTTAGCTTGATTT 58.078 39.130 0.00 0.00 43.62 2.17
76 77 4.574674 TGACAGGATGGTTAGCTTGATT 57.425 40.909 0.00 0.00 43.62 2.57
77 78 4.574674 TTGACAGGATGGTTAGCTTGAT 57.425 40.909 0.00 0.00 43.62 2.57
78 79 4.365514 TTTGACAGGATGGTTAGCTTGA 57.634 40.909 0.00 0.00 43.62 3.02
79 80 4.520492 ACTTTTGACAGGATGGTTAGCTTG 59.480 41.667 0.00 0.00 43.62 4.01
80 81 4.729868 ACTTTTGACAGGATGGTTAGCTT 58.270 39.130 0.00 0.00 43.62 3.74
81 82 4.373156 ACTTTTGACAGGATGGTTAGCT 57.627 40.909 0.00 0.00 43.62 3.32
82 83 6.569179 TTTACTTTTGACAGGATGGTTAGC 57.431 37.500 0.00 0.00 43.62 3.09
86 87 9.308000 TGATTTATTTACTTTTGACAGGATGGT 57.692 29.630 0.00 0.00 43.62 3.55
89 90 9.860898 GCTTGATTTATTTACTTTTGACAGGAT 57.139 29.630 0.00 0.00 0.00 3.24
90 91 8.303876 GGCTTGATTTATTTACTTTTGACAGGA 58.696 33.333 0.00 0.00 0.00 3.86
91 92 7.273381 CGGCTTGATTTATTTACTTTTGACAGG 59.727 37.037 0.00 0.00 0.00 4.00
92 93 8.020819 TCGGCTTGATTTATTTACTTTTGACAG 58.979 33.333 0.00 0.00 0.00 3.51
93 94 7.806014 GTCGGCTTGATTTATTTACTTTTGACA 59.194 33.333 0.00 0.00 0.00 3.58
94 95 7.272731 GGTCGGCTTGATTTATTTACTTTTGAC 59.727 37.037 0.00 0.00 0.00 3.18
95 96 7.040340 TGGTCGGCTTGATTTATTTACTTTTGA 60.040 33.333 0.00 0.00 0.00 2.69
96 97 7.087639 TGGTCGGCTTGATTTATTTACTTTTG 58.912 34.615 0.00 0.00 0.00 2.44
97 98 7.222000 TGGTCGGCTTGATTTATTTACTTTT 57.778 32.000 0.00 0.00 0.00 2.27
98 99 6.827586 TGGTCGGCTTGATTTATTTACTTT 57.172 33.333 0.00 0.00 0.00 2.66
99 100 6.601613 TCATGGTCGGCTTGATTTATTTACTT 59.398 34.615 0.00 0.00 0.00 2.24
100 101 6.119536 TCATGGTCGGCTTGATTTATTTACT 58.880 36.000 0.00 0.00 0.00 2.24
101 102 6.371809 TCATGGTCGGCTTGATTTATTTAC 57.628 37.500 0.00 0.00 0.00 2.01
102 103 6.770303 TCATCATGGTCGGCTTGATTTATTTA 59.230 34.615 3.71 0.00 0.00 1.40
103 104 5.593909 TCATCATGGTCGGCTTGATTTATTT 59.406 36.000 3.71 0.00 0.00 1.40
104 105 5.132502 TCATCATGGTCGGCTTGATTTATT 58.867 37.500 3.71 0.00 0.00 1.40
105 106 4.717877 TCATCATGGTCGGCTTGATTTAT 58.282 39.130 3.71 0.00 0.00 1.40
106 107 4.149511 TCATCATGGTCGGCTTGATTTA 57.850 40.909 3.71 0.00 0.00 1.40
107 108 3.003394 TCATCATGGTCGGCTTGATTT 57.997 42.857 3.71 0.00 0.00 2.17
108 109 2.715749 TCATCATGGTCGGCTTGATT 57.284 45.000 3.71 0.00 0.00 2.57
109 110 2.105306 TGATCATCATGGTCGGCTTGAT 59.895 45.455 0.00 0.99 27.66 2.57
110 111 1.485895 TGATCATCATGGTCGGCTTGA 59.514 47.619 0.00 0.00 27.66 3.02
111 112 1.957668 TGATCATCATGGTCGGCTTG 58.042 50.000 0.00 0.00 27.66 4.01
112 113 2.569059 CTTGATCATCATGGTCGGCTT 58.431 47.619 0.00 0.00 27.66 4.35
113 114 1.813092 GCTTGATCATCATGGTCGGCT 60.813 52.381 8.03 0.00 27.66 5.52
114 115 0.590195 GCTTGATCATCATGGTCGGC 59.410 55.000 0.00 0.00 27.66 5.54
115 116 2.251409 AGCTTGATCATCATGGTCGG 57.749 50.000 0.00 0.00 27.66 4.79
116 117 3.200483 TCAAGCTTGATCATCATGGTCG 58.800 45.455 25.16 0.00 32.21 4.79
117 118 5.996513 ACTATCAAGCTTGATCATCATGGTC 59.003 40.000 38.37 0.00 44.17 4.02
118 119 5.763698 CACTATCAAGCTTGATCATCATGGT 59.236 40.000 38.37 23.02 44.17 3.55
119 120 5.181433 CCACTATCAAGCTTGATCATCATGG 59.819 44.000 38.37 31.10 44.17 3.66
120 121 5.763698 ACCACTATCAAGCTTGATCATCATG 59.236 40.000 38.37 27.77 44.17 3.07
121 122 5.938279 ACCACTATCAAGCTTGATCATCAT 58.062 37.500 38.37 22.53 44.17 2.45
122 123 5.363101 GACCACTATCAAGCTTGATCATCA 58.637 41.667 38.37 23.36 44.17 3.07
123 124 4.447054 CGACCACTATCAAGCTTGATCATC 59.553 45.833 38.37 26.81 44.17 2.92
124 125 4.375272 CGACCACTATCAAGCTTGATCAT 58.625 43.478 38.37 26.60 44.17 2.45
125 126 3.430790 CCGACCACTATCAAGCTTGATCA 60.431 47.826 38.37 24.66 44.17 2.92
126 127 3.126831 CCGACCACTATCAAGCTTGATC 58.873 50.000 38.37 25.22 44.17 2.92
128 129 1.899814 ACCGACCACTATCAAGCTTGA 59.100 47.619 30.23 30.23 42.14 3.02
129 130 2.386661 ACCGACCACTATCAAGCTTG 57.613 50.000 20.81 20.81 0.00 4.01
130 131 2.699954 CAACCGACCACTATCAAGCTT 58.300 47.619 0.00 0.00 0.00 3.74
131 132 1.676014 GCAACCGACCACTATCAAGCT 60.676 52.381 0.00 0.00 0.00 3.74
132 133 0.727398 GCAACCGACCACTATCAAGC 59.273 55.000 0.00 0.00 0.00 4.01
133 134 0.999406 CGCAACCGACCACTATCAAG 59.001 55.000 0.00 0.00 36.29 3.02
134 135 0.390603 CCGCAACCGACCACTATCAA 60.391 55.000 0.00 0.00 36.29 2.57
135 136 1.216977 CCGCAACCGACCACTATCA 59.783 57.895 0.00 0.00 36.29 2.15
136 137 1.082117 CACCGCAACCGACCACTATC 61.082 60.000 0.00 0.00 36.29 2.08
137 138 1.079405 CACCGCAACCGACCACTAT 60.079 57.895 0.00 0.00 36.29 2.12
138 139 1.746322 TTCACCGCAACCGACCACTA 61.746 55.000 0.00 0.00 36.29 2.74
139 140 2.989055 CTTCACCGCAACCGACCACT 62.989 60.000 0.00 0.00 36.29 4.00
140 141 2.589442 TTCACCGCAACCGACCAC 60.589 61.111 0.00 0.00 36.29 4.16
141 142 2.280524 CTTCACCGCAACCGACCA 60.281 61.111 0.00 0.00 36.29 4.02
142 143 2.280592 ACTTCACCGCAACCGACC 60.281 61.111 0.00 0.00 36.29 4.79
143 144 2.654912 CGACTTCACCGCAACCGAC 61.655 63.158 0.00 0.00 36.29 4.79
144 145 2.355363 CGACTTCACCGCAACCGA 60.355 61.111 0.00 0.00 36.29 4.69
145 146 3.411351 CCGACTTCACCGCAACCG 61.411 66.667 0.00 0.00 0.00 4.44
146 147 2.027625 CTCCGACTTCACCGCAACC 61.028 63.158 0.00 0.00 0.00 3.77
147 148 0.878961 AACTCCGACTTCACCGCAAC 60.879 55.000 0.00 0.00 0.00 4.17
148 149 0.878523 CAACTCCGACTTCACCGCAA 60.879 55.000 0.00 0.00 0.00 4.85
149 150 1.300620 CAACTCCGACTTCACCGCA 60.301 57.895 0.00 0.00 0.00 5.69
150 151 2.668280 GCAACTCCGACTTCACCGC 61.668 63.158 0.00 0.00 0.00 5.68
151 152 1.006102 AGCAACTCCGACTTCACCG 60.006 57.895 0.00 0.00 0.00 4.94
152 153 0.951040 CCAGCAACTCCGACTTCACC 60.951 60.000 0.00 0.00 0.00 4.02
153 154 0.033504 TCCAGCAACTCCGACTTCAC 59.966 55.000 0.00 0.00 0.00 3.18
154 155 0.976641 ATCCAGCAACTCCGACTTCA 59.023 50.000 0.00 0.00 0.00 3.02
155 156 1.363744 CATCCAGCAACTCCGACTTC 58.636 55.000 0.00 0.00 0.00 3.01
156 157 0.036010 CCATCCAGCAACTCCGACTT 60.036 55.000 0.00 0.00 0.00 3.01
157 158 0.904865 TCCATCCAGCAACTCCGACT 60.905 55.000 0.00 0.00 0.00 4.18
158 159 0.460987 CTCCATCCAGCAACTCCGAC 60.461 60.000 0.00 0.00 0.00 4.79
159 160 1.617018 CCTCCATCCAGCAACTCCGA 61.617 60.000 0.00 0.00 0.00 4.55
160 161 1.153289 CCTCCATCCAGCAACTCCG 60.153 63.158 0.00 0.00 0.00 4.63
161 162 0.107459 GTCCTCCATCCAGCAACTCC 60.107 60.000 0.00 0.00 0.00 3.85
162 163 0.615331 TGTCCTCCATCCAGCAACTC 59.385 55.000 0.00 0.00 0.00 3.01
163 164 1.211457 GATGTCCTCCATCCAGCAACT 59.789 52.381 0.00 0.00 43.59 3.16
164 165 1.673168 GATGTCCTCCATCCAGCAAC 58.327 55.000 0.00 0.00 43.59 4.17
172 173 1.141881 GTCGCGTGATGTCCTCCAT 59.858 57.895 5.77 0.00 36.13 3.41
173 174 2.571757 GTCGCGTGATGTCCTCCA 59.428 61.111 5.77 0.00 0.00 3.86
174 175 2.337749 ATCGTCGCGTGATGTCCTCC 62.338 60.000 17.26 0.00 32.69 4.30
175 176 1.064296 ATCGTCGCGTGATGTCCTC 59.936 57.895 17.26 0.00 32.69 3.71
176 177 1.226688 CATCGTCGCGTGATGTCCT 60.227 57.895 25.43 2.03 38.69 3.85
177 178 1.226575 TCATCGTCGCGTGATGTCC 60.227 57.895 29.26 0.00 42.96 4.02
178 179 0.523546 AGTCATCGTCGCGTGATGTC 60.524 55.000 29.26 25.83 42.96 3.06
179 180 0.109272 AAGTCATCGTCGCGTGATGT 60.109 50.000 29.26 17.10 42.96 3.06
180 181 0.992072 AAAGTCATCGTCGCGTGATG 59.008 50.000 26.85 26.85 43.62 3.07
181 182 1.390123 CAAAAGTCATCGTCGCGTGAT 59.610 47.619 5.77 8.47 0.00 3.06
182 183 0.781787 CAAAAGTCATCGTCGCGTGA 59.218 50.000 5.77 6.08 0.00 4.35
183 184 0.785708 GCAAAAGTCATCGTCGCGTG 60.786 55.000 5.77 0.00 0.00 5.34
184 185 1.491563 GCAAAAGTCATCGTCGCGT 59.508 52.632 5.77 0.00 0.00 6.01
185 186 1.575132 CGCAAAAGTCATCGTCGCG 60.575 57.895 0.00 0.00 34.89 5.87
186 187 1.225745 CCGCAAAAGTCATCGTCGC 60.226 57.895 0.00 0.00 0.00 5.19
187 188 0.366871 CTCCGCAAAAGTCATCGTCG 59.633 55.000 0.00 0.00 0.00 5.12
188 189 1.710013 TCTCCGCAAAAGTCATCGTC 58.290 50.000 0.00 0.00 0.00 4.20
189 190 2.002586 CATCTCCGCAAAAGTCATCGT 58.997 47.619 0.00 0.00 0.00 3.73
190 191 2.002586 ACATCTCCGCAAAAGTCATCG 58.997 47.619 0.00 0.00 0.00 3.84
191 192 4.425577 AAACATCTCCGCAAAAGTCATC 57.574 40.909 0.00 0.00 0.00 2.92
192 193 4.520492 AGAAAACATCTCCGCAAAAGTCAT 59.480 37.500 0.00 0.00 30.46 3.06
193 194 3.882888 AGAAAACATCTCCGCAAAAGTCA 59.117 39.130 0.00 0.00 30.46 3.41
194 195 4.489679 AGAAAACATCTCCGCAAAAGTC 57.510 40.909 0.00 0.00 30.46 3.01
204 205 6.742144 CGCACATCGCTGAGAAAACATCTC 62.742 50.000 0.00 0.00 44.20 2.75
205 206 2.417933 GCACATCGCTGAGAAAACATCT 59.582 45.455 0.00 0.00 38.37 2.90
206 207 2.778659 GCACATCGCTGAGAAAACATC 58.221 47.619 0.00 0.00 37.77 3.06
207 208 1.129251 CGCACATCGCTGAGAAAACAT 59.871 47.619 0.00 0.00 39.08 2.71
208 209 0.512518 CGCACATCGCTGAGAAAACA 59.487 50.000 0.00 0.00 39.08 2.83
209 210 3.280532 CGCACATCGCTGAGAAAAC 57.719 52.632 0.00 0.00 39.08 2.43
219 220 3.118454 AAACTCCGGCGCACATCG 61.118 61.111 10.83 2.64 42.12 3.84
220 221 2.325082 ACAAACTCCGGCGCACATC 61.325 57.895 10.83 0.00 0.00 3.06
221 222 2.281484 ACAAACTCCGGCGCACAT 60.281 55.556 10.83 0.00 0.00 3.21
222 223 2.646117 TACACAAACTCCGGCGCACA 62.646 55.000 10.83 0.00 0.00 4.57
223 224 1.897398 CTACACAAACTCCGGCGCAC 61.897 60.000 10.83 0.00 0.00 5.34
224 225 1.666553 CTACACAAACTCCGGCGCA 60.667 57.895 10.83 0.00 0.00 6.09
225 226 1.666872 ACTACACAAACTCCGGCGC 60.667 57.895 0.00 0.00 0.00 6.53
226 227 0.319211 TCACTACACAAACTCCGGCG 60.319 55.000 0.00 0.00 0.00 6.46
227 228 1.145803 GTCACTACACAAACTCCGGC 58.854 55.000 0.00 0.00 0.00 6.13
228 229 1.792006 GGTCACTACACAAACTCCGG 58.208 55.000 0.00 0.00 0.00 5.14
229 230 1.001048 TCGGTCACTACACAAACTCCG 60.001 52.381 0.00 0.00 38.36 4.63
230 231 2.798847 GTTCGGTCACTACACAAACTCC 59.201 50.000 0.00 0.00 0.00 3.85
231 232 3.714391 AGTTCGGTCACTACACAAACTC 58.286 45.455 0.00 0.00 0.00 3.01
232 233 3.814005 AGTTCGGTCACTACACAAACT 57.186 42.857 0.00 0.00 0.00 2.66
233 234 6.385033 ACTATAGTTCGGTCACTACACAAAC 58.615 40.000 0.00 0.00 31.92 2.93
234 235 6.207221 TGACTATAGTTCGGTCACTACACAAA 59.793 38.462 6.88 0.00 35.44 2.83
235 236 5.706833 TGACTATAGTTCGGTCACTACACAA 59.293 40.000 6.88 0.00 35.44 3.33
236 237 5.247862 TGACTATAGTTCGGTCACTACACA 58.752 41.667 6.88 0.00 35.44 3.72
237 238 5.808042 TGACTATAGTTCGGTCACTACAC 57.192 43.478 6.88 0.00 35.44 2.90
243 244 6.525578 AAATCAGTGACTATAGTTCGGTCA 57.474 37.500 6.88 0.00 37.60 4.02
244 245 7.674240 GCAAAAATCAGTGACTATAGTTCGGTC 60.674 40.741 6.88 0.00 0.00 4.79
245 246 6.092259 GCAAAAATCAGTGACTATAGTTCGGT 59.908 38.462 6.88 0.00 0.00 4.69
246 247 6.456988 GGCAAAAATCAGTGACTATAGTTCGG 60.457 42.308 6.88 5.05 0.00 4.30
247 248 6.092122 TGGCAAAAATCAGTGACTATAGTTCG 59.908 38.462 6.88 0.00 0.00 3.95
248 249 7.119846 ACTGGCAAAAATCAGTGACTATAGTTC 59.880 37.037 6.88 4.05 42.00 3.01
249 250 6.942576 ACTGGCAAAAATCAGTGACTATAGTT 59.057 34.615 6.88 0.00 42.00 2.24
250 251 6.476378 ACTGGCAAAAATCAGTGACTATAGT 58.524 36.000 4.68 4.68 42.00 2.12
251 252 6.992063 ACTGGCAAAAATCAGTGACTATAG 57.008 37.500 0.00 0.00 42.00 1.31
301 302 9.950680 GCCTCGATCTATTGATTTAATTGAAAA 57.049 29.630 0.00 0.00 34.89 2.29
302 303 9.119418 TGCCTCGATCTATTGATTTAATTGAAA 57.881 29.630 0.00 0.00 34.89 2.69
303 304 8.675705 TGCCTCGATCTATTGATTTAATTGAA 57.324 30.769 0.00 0.00 34.89 2.69
304 305 8.675705 TTGCCTCGATCTATTGATTTAATTGA 57.324 30.769 0.00 0.00 35.52 2.57
305 306 9.734620 TTTTGCCTCGATCTATTGATTTAATTG 57.265 29.630 0.00 0.00 32.19 2.32
306 307 9.956720 CTTTTGCCTCGATCTATTGATTTAATT 57.043 29.630 0.00 0.00 32.19 1.40
307 308 8.571336 CCTTTTGCCTCGATCTATTGATTTAAT 58.429 33.333 0.00 0.00 32.19 1.40
308 309 7.468631 GCCTTTTGCCTCGATCTATTGATTTAA 60.469 37.037 0.00 0.00 32.19 1.52
309 310 6.017109 GCCTTTTGCCTCGATCTATTGATTTA 60.017 38.462 0.00 0.00 32.19 1.40
310 311 5.221126 GCCTTTTGCCTCGATCTATTGATTT 60.221 40.000 0.00 0.00 32.19 2.17
311 312 4.276926 GCCTTTTGCCTCGATCTATTGATT 59.723 41.667 0.00 0.00 32.19 2.57
312 313 3.817647 GCCTTTTGCCTCGATCTATTGAT 59.182 43.478 0.00 0.00 35.26 2.57
313 314 3.118261 AGCCTTTTGCCTCGATCTATTGA 60.118 43.478 0.00 0.00 42.71 2.57
314 315 3.003068 CAGCCTTTTGCCTCGATCTATTG 59.997 47.826 0.00 0.00 42.71 1.90
315 316 3.118261 TCAGCCTTTTGCCTCGATCTATT 60.118 43.478 0.00 0.00 42.71 1.73
316 317 2.435805 TCAGCCTTTTGCCTCGATCTAT 59.564 45.455 0.00 0.00 42.71 1.98
317 318 1.831106 TCAGCCTTTTGCCTCGATCTA 59.169 47.619 0.00 0.00 42.71 1.98
318 319 0.615331 TCAGCCTTTTGCCTCGATCT 59.385 50.000 0.00 0.00 42.71 2.75
319 320 1.453155 TTCAGCCTTTTGCCTCGATC 58.547 50.000 0.00 0.00 42.71 3.69
320 321 2.134789 ATTCAGCCTTTTGCCTCGAT 57.865 45.000 0.00 0.00 42.71 3.59
321 322 2.779755 TATTCAGCCTTTTGCCTCGA 57.220 45.000 0.00 0.00 42.71 4.04
322 323 3.848272 TTTATTCAGCCTTTTGCCTCG 57.152 42.857 0.00 0.00 42.71 4.63
323 324 7.225341 CCATTTATTTATTCAGCCTTTTGCCTC 59.775 37.037 0.00 0.00 42.71 4.70
324 325 7.049754 CCATTTATTTATTCAGCCTTTTGCCT 58.950 34.615 0.00 0.00 42.71 4.75
325 326 7.047271 TCCATTTATTTATTCAGCCTTTTGCC 58.953 34.615 0.00 0.00 42.71 4.52
326 327 8.390354 GTTCCATTTATTTATTCAGCCTTTTGC 58.610 33.333 0.00 0.00 41.71 3.68
327 328 9.434420 TGTTCCATTTATTTATTCAGCCTTTTG 57.566 29.630 0.00 0.00 0.00 2.44
328 329 9.435688 GTGTTCCATTTATTTATTCAGCCTTTT 57.564 29.630 0.00 0.00 0.00 2.27
329 330 8.592809 TGTGTTCCATTTATTTATTCAGCCTTT 58.407 29.630 0.00 0.00 0.00 3.11
330 331 8.133024 TGTGTTCCATTTATTTATTCAGCCTT 57.867 30.769 0.00 0.00 0.00 4.35
331 332 7.716799 TGTGTTCCATTTATTTATTCAGCCT 57.283 32.000 0.00 0.00 0.00 4.58
332 333 8.947055 ATTGTGTTCCATTTATTTATTCAGCC 57.053 30.769 0.00 0.00 0.00 4.85
341 342 8.992073 GCTTTTCTCAATTGTGTTCCATTTATT 58.008 29.630 5.13 0.00 0.00 1.40
342 343 8.149647 TGCTTTTCTCAATTGTGTTCCATTTAT 58.850 29.630 5.13 0.00 0.00 1.40
343 344 7.495901 TGCTTTTCTCAATTGTGTTCCATTTA 58.504 30.769 5.13 0.00 0.00 1.40
344 345 6.347696 TGCTTTTCTCAATTGTGTTCCATTT 58.652 32.000 5.13 0.00 0.00 2.32
345 346 5.916318 TGCTTTTCTCAATTGTGTTCCATT 58.084 33.333 5.13 0.00 0.00 3.16
346 347 5.534207 TGCTTTTCTCAATTGTGTTCCAT 57.466 34.783 5.13 0.00 0.00 3.41
347 348 4.998671 TGCTTTTCTCAATTGTGTTCCA 57.001 36.364 5.13 0.00 0.00 3.53
348 349 6.660887 TTTTGCTTTTCTCAATTGTGTTCC 57.339 33.333 5.13 0.00 0.00 3.62
349 350 7.478355 GTGTTTTTGCTTTTCTCAATTGTGTTC 59.522 33.333 5.13 0.00 0.00 3.18
350 351 7.041508 TGTGTTTTTGCTTTTCTCAATTGTGTT 60.042 29.630 5.13 0.00 0.00 3.32
351 352 6.426328 TGTGTTTTTGCTTTTCTCAATTGTGT 59.574 30.769 5.13 0.00 0.00 3.72
352 353 6.829703 TGTGTTTTTGCTTTTCTCAATTGTG 58.170 32.000 5.13 2.93 0.00 3.33
353 354 7.614124 ATGTGTTTTTGCTTTTCTCAATTGT 57.386 28.000 5.13 0.00 0.00 2.71
354 355 9.033481 TCTATGTGTTTTTGCTTTTCTCAATTG 57.967 29.630 0.00 0.00 0.00 2.32
355 356 9.598517 TTCTATGTGTTTTTGCTTTTCTCAATT 57.401 25.926 0.00 0.00 0.00 2.32
356 357 9.768662 ATTCTATGTGTTTTTGCTTTTCTCAAT 57.231 25.926 0.00 0.00 0.00 2.57
357 358 9.598517 AATTCTATGTGTTTTTGCTTTTCTCAA 57.401 25.926 0.00 0.00 0.00 3.02
387 388 9.565090 TCGACTTGTTAGCCTAGTTATATCTAA 57.435 33.333 0.00 0.00 0.00 2.10
388 389 9.217278 CTCGACTTGTTAGCCTAGTTATATCTA 57.783 37.037 0.00 0.00 0.00 1.98
389 390 7.308710 GCTCGACTTGTTAGCCTAGTTATATCT 60.309 40.741 0.00 0.00 0.00 1.98
390 391 6.802834 GCTCGACTTGTTAGCCTAGTTATATC 59.197 42.308 0.00 0.00 0.00 1.63
391 392 6.679843 GCTCGACTTGTTAGCCTAGTTATAT 58.320 40.000 0.00 0.00 0.00 0.86
392 393 6.069684 GCTCGACTTGTTAGCCTAGTTATA 57.930 41.667 0.00 0.00 0.00 0.98
393 394 4.934515 GCTCGACTTGTTAGCCTAGTTAT 58.065 43.478 0.00 0.00 0.00 1.89
394 395 4.367386 GCTCGACTTGTTAGCCTAGTTA 57.633 45.455 0.00 0.00 0.00 2.24
395 396 3.233684 GCTCGACTTGTTAGCCTAGTT 57.766 47.619 0.00 0.00 0.00 2.24
396 397 2.943449 GCTCGACTTGTTAGCCTAGT 57.057 50.000 0.00 0.00 0.00 2.57
401 402 4.681942 CACTATATGGCTCGACTTGTTAGC 59.318 45.833 0.00 0.00 35.47 3.09
402 403 4.681942 GCACTATATGGCTCGACTTGTTAG 59.318 45.833 0.00 0.00 0.00 2.34
403 404 4.098807 TGCACTATATGGCTCGACTTGTTA 59.901 41.667 0.00 0.00 0.00 2.41
404 405 3.118775 TGCACTATATGGCTCGACTTGTT 60.119 43.478 0.00 0.00 0.00 2.83
405 406 2.430694 TGCACTATATGGCTCGACTTGT 59.569 45.455 0.00 0.00 0.00 3.16
406 407 2.797156 GTGCACTATATGGCTCGACTTG 59.203 50.000 10.32 0.00 0.00 3.16
407 408 2.224066 GGTGCACTATATGGCTCGACTT 60.224 50.000 17.98 0.00 0.00 3.01
408 409 1.341531 GGTGCACTATATGGCTCGACT 59.658 52.381 17.98 0.00 0.00 4.18
409 410 1.605712 GGGTGCACTATATGGCTCGAC 60.606 57.143 17.98 0.00 0.00 4.20
410 411 0.679505 GGGTGCACTATATGGCTCGA 59.320 55.000 17.98 0.00 0.00 4.04
411 412 0.667487 CGGGTGCACTATATGGCTCG 60.667 60.000 17.98 0.00 0.00 5.03
412 413 0.951040 GCGGGTGCACTATATGGCTC 60.951 60.000 17.98 0.00 42.15 4.70
413 414 1.071471 GCGGGTGCACTATATGGCT 59.929 57.895 17.98 0.00 42.15 4.75
414 415 1.966451 GGCGGGTGCACTATATGGC 60.966 63.158 17.98 10.50 45.35 4.40
415 416 0.179032 TTGGCGGGTGCACTATATGG 60.179 55.000 17.98 1.16 45.35 2.74
416 417 0.944386 GTTGGCGGGTGCACTATATG 59.056 55.000 17.98 3.51 45.35 1.78
417 418 0.544223 TGTTGGCGGGTGCACTATAT 59.456 50.000 17.98 0.00 45.35 0.86
418 419 0.325272 TTGTTGGCGGGTGCACTATA 59.675 50.000 17.98 0.00 45.35 1.31
419 420 0.538516 TTTGTTGGCGGGTGCACTAT 60.539 50.000 17.98 0.00 45.35 2.12
420 421 0.752009 TTTTGTTGGCGGGTGCACTA 60.752 50.000 17.98 0.00 45.35 2.74
421 422 2.015227 CTTTTGTTGGCGGGTGCACT 62.015 55.000 17.98 0.00 45.35 4.40
422 423 1.591327 CTTTTGTTGGCGGGTGCAC 60.591 57.895 8.80 8.80 45.35 4.57
423 424 0.752009 TACTTTTGTTGGCGGGTGCA 60.752 50.000 0.00 0.00 45.35 4.57
424 425 0.601057 ATACTTTTGTTGGCGGGTGC 59.399 50.000 0.00 0.00 41.71 5.01
425 426 1.067915 CCATACTTTTGTTGGCGGGTG 60.068 52.381 0.00 0.00 0.00 4.61
426 427 1.253100 CCATACTTTTGTTGGCGGGT 58.747 50.000 0.00 0.00 0.00 5.28
427 428 1.067915 CACCATACTTTTGTTGGCGGG 60.068 52.381 0.00 0.00 35.47 6.13
428 429 1.067915 CCACCATACTTTTGTTGGCGG 60.068 52.381 0.00 0.00 35.47 6.13
429 430 1.883275 TCCACCATACTTTTGTTGGCG 59.117 47.619 0.00 0.00 35.47 5.69
430 431 2.625790 TGTCCACCATACTTTTGTTGGC 59.374 45.455 0.00 0.00 35.47 4.52
431 432 3.888930 ACTGTCCACCATACTTTTGTTGG 59.111 43.478 0.00 0.00 36.96 3.77
432 433 4.792704 GCACTGTCCACCATACTTTTGTTG 60.793 45.833 0.00 0.00 0.00 3.33
433 434 3.317993 GCACTGTCCACCATACTTTTGTT 59.682 43.478 0.00 0.00 0.00 2.83
434 435 2.884639 GCACTGTCCACCATACTTTTGT 59.115 45.455 0.00 0.00 0.00 2.83
435 436 2.884012 TGCACTGTCCACCATACTTTTG 59.116 45.455 0.00 0.00 0.00 2.44
436 437 3.222173 TGCACTGTCCACCATACTTTT 57.778 42.857 0.00 0.00 0.00 2.27
437 438 2.949177 TGCACTGTCCACCATACTTT 57.051 45.000 0.00 0.00 0.00 2.66
438 439 3.439857 AATGCACTGTCCACCATACTT 57.560 42.857 0.00 0.00 0.00 2.24
439 440 3.347216 GAAATGCACTGTCCACCATACT 58.653 45.455 0.00 0.00 0.00 2.12
440 441 2.423538 GGAAATGCACTGTCCACCATAC 59.576 50.000 7.17 0.00 0.00 2.39
441 442 2.308570 AGGAAATGCACTGTCCACCATA 59.691 45.455 13.17 0.00 33.57 2.74
442 443 1.076024 AGGAAATGCACTGTCCACCAT 59.924 47.619 13.17 0.00 33.57 3.55
443 444 0.478072 AGGAAATGCACTGTCCACCA 59.522 50.000 13.17 0.00 33.57 4.17
444 445 2.489938 TAGGAAATGCACTGTCCACC 57.510 50.000 13.17 0.57 33.57 4.61
445 446 4.458989 TCAAATAGGAAATGCACTGTCCAC 59.541 41.667 13.17 0.00 33.57 4.02
446 447 4.458989 GTCAAATAGGAAATGCACTGTCCA 59.541 41.667 13.17 2.20 33.57 4.02
447 448 4.437390 CGTCAAATAGGAAATGCACTGTCC 60.437 45.833 4.33 4.33 0.00 4.02
448 449 4.651994 CGTCAAATAGGAAATGCACTGTC 58.348 43.478 0.00 0.00 0.00 3.51
449 450 3.119849 GCGTCAAATAGGAAATGCACTGT 60.120 43.478 0.00 0.00 0.00 3.55
450 451 3.119884 TGCGTCAAATAGGAAATGCACTG 60.120 43.478 0.00 0.00 0.00 3.66
451 452 3.081061 TGCGTCAAATAGGAAATGCACT 58.919 40.909 0.00 0.00 0.00 4.40
452 453 3.171277 GTGCGTCAAATAGGAAATGCAC 58.829 45.455 0.00 3.14 43.66 4.57
453 454 2.816672 TGTGCGTCAAATAGGAAATGCA 59.183 40.909 0.00 0.00 0.00 3.96
454 455 3.485947 TGTGCGTCAAATAGGAAATGC 57.514 42.857 0.00 0.00 0.00 3.56
455 456 4.266029 GCAATGTGCGTCAAATAGGAAATG 59.734 41.667 0.00 0.00 31.71 2.32
456 457 4.423732 GCAATGTGCGTCAAATAGGAAAT 58.576 39.130 0.00 0.00 31.71 2.17
457 458 3.832276 GCAATGTGCGTCAAATAGGAAA 58.168 40.909 0.00 0.00 31.71 3.13
458 459 3.485947 GCAATGTGCGTCAAATAGGAA 57.514 42.857 0.00 0.00 31.71 3.36
470 471 3.224955 GCACTATGACGCAATGTGC 57.775 52.632 17.10 17.10 45.23 4.57
471 472 0.026674 CGGCACTATGACGCAATGTG 59.973 55.000 0.00 0.00 44.33 3.21
472 473 2.383170 CGGCACTATGACGCAATGT 58.617 52.632 0.00 0.00 44.33 2.71
479 480 1.429148 CGAAAGGCCGGCACTATGAC 61.429 60.000 30.85 8.87 0.00 3.06
480 481 1.153449 CGAAAGGCCGGCACTATGA 60.153 57.895 30.85 0.00 0.00 2.15
481 482 2.823829 GCGAAAGGCCGGCACTATG 61.824 63.158 30.85 15.76 34.80 2.23
482 483 2.513897 GCGAAAGGCCGGCACTAT 60.514 61.111 30.85 11.24 34.80 2.12
483 484 4.010224 TGCGAAAGGCCGGCACTA 62.010 61.111 30.85 4.49 42.61 2.74
487 488 3.896863 CTTTGTGCGAAAGGCCGGC 62.897 63.158 21.18 21.18 42.61 6.13
488 489 2.255252 CTTTGTGCGAAAGGCCGG 59.745 61.111 0.00 0.00 42.61 6.13
489 490 2.187599 CTCCTTTGTGCGAAAGGCCG 62.188 60.000 18.20 10.35 44.92 6.13
490 491 1.581447 CTCCTTTGTGCGAAAGGCC 59.419 57.895 18.20 0.00 44.92 5.19
491 492 1.081175 GCTCCTTTGTGCGAAAGGC 60.081 57.895 18.20 7.53 44.92 4.35
498 499 2.174349 CGCTTCGCTCCTTTGTGC 59.826 61.111 0.00 0.00 0.00 4.57
499 500 1.784062 CTCGCTTCGCTCCTTTGTG 59.216 57.895 0.00 0.00 0.00 3.33
500 501 2.029844 GCTCGCTTCGCTCCTTTGT 61.030 57.895 0.00 0.00 0.00 2.83
501 502 2.781300 GCTCGCTTCGCTCCTTTG 59.219 61.111 0.00 0.00 0.00 2.77
502 503 2.811317 CGCTCGCTTCGCTCCTTT 60.811 61.111 0.00 0.00 0.00 3.11
515 516 4.838152 TGGCCCATTCGAGCGCTC 62.838 66.667 27.64 27.64 0.00 5.03
516 517 4.845580 CTGGCCCATTCGAGCGCT 62.846 66.667 11.27 11.27 0.00 5.92
518 519 2.721971 ATAGCTGGCCCATTCGAGCG 62.722 60.000 0.00 0.00 36.52 5.03
519 520 0.536006 AATAGCTGGCCCATTCGAGC 60.536 55.000 0.00 0.10 0.00 5.03
520 521 1.972872 AAATAGCTGGCCCATTCGAG 58.027 50.000 0.00 0.00 0.00 4.04
521 522 2.810400 GCTAAATAGCTGGCCCATTCGA 60.810 50.000 0.00 0.00 45.62 3.71
522 523 1.537202 GCTAAATAGCTGGCCCATTCG 59.463 52.381 0.00 0.00 45.62 3.34
545 546 9.394767 CGATGTATTGATAATTGAATCCCCATA 57.605 33.333 0.00 0.00 0.00 2.74
546 547 8.108999 TCGATGTATTGATAATTGAATCCCCAT 58.891 33.333 0.00 0.00 0.00 4.00
547 548 7.457561 TCGATGTATTGATAATTGAATCCCCA 58.542 34.615 0.00 0.00 0.00 4.96
548 549 7.066284 CCTCGATGTATTGATAATTGAATCCCC 59.934 40.741 0.00 0.00 0.00 4.81
549 550 7.607991 ACCTCGATGTATTGATAATTGAATCCC 59.392 37.037 0.00 0.00 0.00 3.85
550 551 8.553459 ACCTCGATGTATTGATAATTGAATCC 57.447 34.615 0.00 0.00 0.00 3.01
610 611 9.936759 AAACTGTGTTCCATTTTCTTCTAAAAA 57.063 25.926 0.00 0.00 32.99 1.94
611 612 9.364989 CAAACTGTGTTCCATTTTCTTCTAAAA 57.635 29.630 0.00 0.00 0.00 1.52
612 613 8.527810 ACAAACTGTGTTCCATTTTCTTCTAAA 58.472 29.630 0.00 0.00 37.01 1.85
613 614 8.062065 ACAAACTGTGTTCCATTTTCTTCTAA 57.938 30.769 0.00 0.00 37.01 2.10
614 615 7.639113 ACAAACTGTGTTCCATTTTCTTCTA 57.361 32.000 0.00 0.00 37.01 2.10
615 616 6.530019 ACAAACTGTGTTCCATTTTCTTCT 57.470 33.333 0.00 0.00 37.01 2.85
616 617 8.696410 TTTACAAACTGTGTTCCATTTTCTTC 57.304 30.769 0.00 0.00 41.98 2.87
617 618 9.665719 AATTTACAAACTGTGTTCCATTTTCTT 57.334 25.926 0.00 0.00 41.98 2.52
618 619 9.665719 AAATTTACAAACTGTGTTCCATTTTCT 57.334 25.926 0.00 0.00 41.98 2.52
622 623 9.225436 ACAAAAATTTACAAACTGTGTTCCATT 57.775 25.926 0.00 0.00 41.98 3.16
623 624 8.785329 ACAAAAATTTACAAACTGTGTTCCAT 57.215 26.923 0.00 0.00 41.98 3.41
624 625 9.360093 CTACAAAAATTTACAAACTGTGTTCCA 57.640 29.630 0.00 0.00 41.98 3.53
625 626 8.813282 CCTACAAAAATTTACAAACTGTGTTCC 58.187 33.333 0.00 0.00 41.98 3.62
626 627 9.361315 ACCTACAAAAATTTACAAACTGTGTTC 57.639 29.630 0.00 0.00 41.98 3.18
629 630 8.964150 GCTACCTACAAAAATTTACAAACTGTG 58.036 33.333 0.00 0.00 0.00 3.66
630 631 8.909923 AGCTACCTACAAAAATTTACAAACTGT 58.090 29.630 0.00 0.00 0.00 3.55
631 632 9.744468 AAGCTACCTACAAAAATTTACAAACTG 57.256 29.630 0.00 0.00 0.00 3.16
679 680 4.734398 TGCTCAACTGTGTTCCATTTTT 57.266 36.364 0.00 0.00 0.00 1.94
680 681 4.734398 TTGCTCAACTGTGTTCCATTTT 57.266 36.364 0.00 0.00 0.00 1.82
681 682 4.441913 CCTTTGCTCAACTGTGTTCCATTT 60.442 41.667 0.00 0.00 0.00 2.32
682 683 3.068590 CCTTTGCTCAACTGTGTTCCATT 59.931 43.478 0.00 0.00 0.00 3.16
683 684 2.624838 CCTTTGCTCAACTGTGTTCCAT 59.375 45.455 0.00 0.00 0.00 3.41
684 685 2.023673 CCTTTGCTCAACTGTGTTCCA 58.976 47.619 0.00 0.00 0.00 3.53
685 686 2.291741 CTCCTTTGCTCAACTGTGTTCC 59.708 50.000 0.00 0.00 0.00 3.62
686 687 3.206150 TCTCCTTTGCTCAACTGTGTTC 58.794 45.455 0.00 0.00 0.00 3.18
687 688 3.281727 TCTCCTTTGCTCAACTGTGTT 57.718 42.857 0.00 0.00 0.00 3.32
688 689 3.281727 TTCTCCTTTGCTCAACTGTGT 57.718 42.857 0.00 0.00 0.00 3.72
689 690 3.378112 TGTTTCTCCTTTGCTCAACTGTG 59.622 43.478 0.00 0.00 0.00 3.66
690 691 3.378427 GTGTTTCTCCTTTGCTCAACTGT 59.622 43.478 0.00 0.00 0.00 3.55
691 692 3.378112 TGTGTTTCTCCTTTGCTCAACTG 59.622 43.478 0.00 0.00 0.00 3.16
692 693 3.620488 TGTGTTTCTCCTTTGCTCAACT 58.380 40.909 0.00 0.00 0.00 3.16
693 694 4.574599 ATGTGTTTCTCCTTTGCTCAAC 57.425 40.909 0.00 0.00 0.00 3.18
694 695 5.129634 TGTATGTGTTTCTCCTTTGCTCAA 58.870 37.500 0.00 0.00 0.00 3.02
695 696 4.713553 TGTATGTGTTTCTCCTTTGCTCA 58.286 39.130 0.00 0.00 0.00 4.26
696 697 5.689383 TTGTATGTGTTTCTCCTTTGCTC 57.311 39.130 0.00 0.00 0.00 4.26
697 698 6.655078 AATTGTATGTGTTTCTCCTTTGCT 57.345 33.333 0.00 0.00 0.00 3.91
698 699 8.986477 AATAATTGTATGTGTTTCTCCTTTGC 57.014 30.769 0.00 0.00 0.00 3.68
726 727 7.553044 GCTCAACTTGTTAGGTTGGTTATATCT 59.447 37.037 6.72 0.00 42.76 1.98
727 728 7.201705 GGCTCAACTTGTTAGGTTGGTTATATC 60.202 40.741 6.72 0.00 42.76 1.63
728 729 6.602009 GGCTCAACTTGTTAGGTTGGTTATAT 59.398 38.462 6.72 0.00 42.76 0.86
729 730 5.941647 GGCTCAACTTGTTAGGTTGGTTATA 59.058 40.000 6.72 0.00 42.76 0.98
730 731 4.765339 GGCTCAACTTGTTAGGTTGGTTAT 59.235 41.667 6.72 0.00 42.76 1.89
731 732 4.139038 GGCTCAACTTGTTAGGTTGGTTA 58.861 43.478 6.72 0.00 42.76 2.85
732 733 2.956333 GGCTCAACTTGTTAGGTTGGTT 59.044 45.455 6.72 0.00 42.76 3.67
733 734 2.583143 GGCTCAACTTGTTAGGTTGGT 58.417 47.619 6.72 0.00 42.76 3.67
734 735 1.535462 CGGCTCAACTTGTTAGGTTGG 59.465 52.381 6.72 0.51 42.76 3.77
735 736 2.218603 ACGGCTCAACTTGTTAGGTTG 58.781 47.619 0.00 0.00 43.57 3.77
736 737 2.632987 ACGGCTCAACTTGTTAGGTT 57.367 45.000 0.00 0.00 0.00 3.50
737 738 2.895404 TCTACGGCTCAACTTGTTAGGT 59.105 45.455 0.00 0.00 0.00 3.08
738 739 3.192844 TCTCTACGGCTCAACTTGTTAGG 59.807 47.826 0.00 0.00 0.00 2.69
739 740 4.082679 ACTCTCTACGGCTCAACTTGTTAG 60.083 45.833 0.00 0.00 0.00 2.34
740 741 3.825014 ACTCTCTACGGCTCAACTTGTTA 59.175 43.478 0.00 0.00 0.00 2.41
741 742 2.628657 ACTCTCTACGGCTCAACTTGTT 59.371 45.455 0.00 0.00 0.00 2.83
742 743 2.029828 CACTCTCTACGGCTCAACTTGT 60.030 50.000 0.00 0.00 0.00 3.16
743 744 2.600731 CACTCTCTACGGCTCAACTTG 58.399 52.381 0.00 0.00 0.00 3.16
744 745 1.067495 GCACTCTCTACGGCTCAACTT 60.067 52.381 0.00 0.00 0.00 2.66
745 746 0.528470 GCACTCTCTACGGCTCAACT 59.472 55.000 0.00 0.00 0.00 3.16
746 747 0.243907 TGCACTCTCTACGGCTCAAC 59.756 55.000 0.00 0.00 0.00 3.18
747 748 0.243907 GTGCACTCTCTACGGCTCAA 59.756 55.000 10.32 0.00 0.00 3.02
748 749 1.883732 GTGCACTCTCTACGGCTCA 59.116 57.895 10.32 0.00 0.00 4.26
749 750 1.226435 CGTGCACTCTCTACGGCTC 60.226 63.158 16.19 0.00 34.43 4.70
750 751 1.972223 ACGTGCACTCTCTACGGCT 60.972 57.895 16.19 0.00 41.74 5.52
751 752 1.801913 CACGTGCACTCTCTACGGC 60.802 63.158 16.19 0.00 41.74 5.68
752 753 1.801913 GCACGTGCACTCTCTACGG 60.802 63.158 34.52 0.00 41.74 4.02
753 754 3.755404 GCACGTGCACTCTCTACG 58.245 61.111 34.52 1.73 42.98 3.51
763 764 2.155539 GTCAAATTGGAAATGCACGTGC 59.844 45.455 33.11 33.11 42.50 5.34
764 765 2.404693 CGTCAAATTGGAAATGCACGTG 59.595 45.455 12.28 12.28 0.00 4.49
765 766 2.660490 CGTCAAATTGGAAATGCACGT 58.340 42.857 0.00 0.00 0.00 4.49
766 767 1.386412 GCGTCAAATTGGAAATGCACG 59.614 47.619 0.00 0.00 0.00 5.34
767 768 2.155539 GTGCGTCAAATTGGAAATGCAC 59.844 45.455 16.04 16.04 43.66 4.57
768 769 2.223900 TGTGCGTCAAATTGGAAATGCA 60.224 40.909 0.00 0.00 0.00 3.96
769 770 2.402305 TGTGCGTCAAATTGGAAATGC 58.598 42.857 0.00 0.00 0.00 3.56
770 771 6.365789 ACTTAATGTGCGTCAAATTGGAAATG 59.634 34.615 5.75 0.00 0.00 2.32
771 772 6.454795 ACTTAATGTGCGTCAAATTGGAAAT 58.545 32.000 5.75 0.00 0.00 2.17
772 773 5.837437 ACTTAATGTGCGTCAAATTGGAAA 58.163 33.333 5.75 0.00 0.00 3.13
773 774 5.009110 TGACTTAATGTGCGTCAAATTGGAA 59.991 36.000 5.75 0.00 34.99 3.53
774 775 4.517075 TGACTTAATGTGCGTCAAATTGGA 59.483 37.500 5.75 0.00 34.99 3.53
775 776 4.793071 TGACTTAATGTGCGTCAAATTGG 58.207 39.130 5.75 2.62 34.99 3.16
776 777 6.746104 TTTGACTTAATGTGCGTCAAATTG 57.254 33.333 13.14 0.00 46.60 2.32
780 781 5.163703 ACACTTTTGACTTAATGTGCGTCAA 60.164 36.000 3.77 3.77 43.56 3.18
781 782 4.334203 ACACTTTTGACTTAATGTGCGTCA 59.666 37.500 0.00 0.00 36.93 4.35
782 783 4.844267 ACACTTTTGACTTAATGTGCGTC 58.156 39.130 0.00 0.00 36.93 5.19
783 784 4.893424 ACACTTTTGACTTAATGTGCGT 57.107 36.364 0.00 0.00 36.93 5.24
784 785 4.440758 CCAACACTTTTGACTTAATGTGCG 59.559 41.667 0.00 0.00 36.93 5.34
785 786 4.209080 GCCAACACTTTTGACTTAATGTGC 59.791 41.667 0.00 0.00 36.93 4.57
786 787 4.744631 GGCCAACACTTTTGACTTAATGTG 59.255 41.667 0.00 0.00 38.45 3.21
787 788 4.404073 TGGCCAACACTTTTGACTTAATGT 59.596 37.500 0.61 0.00 0.00 2.71
788 789 4.942852 TGGCCAACACTTTTGACTTAATG 58.057 39.130 0.61 0.00 0.00 1.90
789 790 5.806654 ATGGCCAACACTTTTGACTTAAT 57.193 34.783 10.96 0.00 0.00 1.40
790 791 5.105146 ACAATGGCCAACACTTTTGACTTAA 60.105 36.000 18.92 0.00 0.00 1.85
791 792 4.404073 ACAATGGCCAACACTTTTGACTTA 59.596 37.500 18.92 0.00 0.00 2.24
792 793 3.197549 ACAATGGCCAACACTTTTGACTT 59.802 39.130 18.92 0.00 0.00 3.01
793 794 2.765699 ACAATGGCCAACACTTTTGACT 59.234 40.909 18.92 0.00 0.00 3.41
794 795 3.177997 ACAATGGCCAACACTTTTGAC 57.822 42.857 18.92 0.00 0.00 3.18
795 796 3.431486 GGAACAATGGCCAACACTTTTGA 60.431 43.478 18.92 0.00 0.00 2.69
796 797 2.871633 GGAACAATGGCCAACACTTTTG 59.128 45.455 10.96 11.62 0.00 2.44
797 798 2.771372 AGGAACAATGGCCAACACTTTT 59.229 40.909 10.96 0.00 0.00 2.27
798 799 2.102925 CAGGAACAATGGCCAACACTTT 59.897 45.455 10.96 0.00 0.00 2.66
799 800 1.688197 CAGGAACAATGGCCAACACTT 59.312 47.619 10.96 0.00 0.00 3.16
800 801 1.133513 TCAGGAACAATGGCCAACACT 60.134 47.619 10.96 0.00 0.00 3.55
801 802 1.000274 GTCAGGAACAATGGCCAACAC 60.000 52.381 10.96 0.00 0.00 3.32
802 803 1.327303 GTCAGGAACAATGGCCAACA 58.673 50.000 10.96 0.00 0.00 3.33
803 804 1.327303 TGTCAGGAACAATGGCCAAC 58.673 50.000 10.96 0.00 34.03 3.77
804 805 2.079170 TTGTCAGGAACAATGGCCAA 57.921 45.000 10.96 0.00 42.95 4.52
805 806 3.837893 TTGTCAGGAACAATGGCCA 57.162 47.368 8.56 8.56 42.95 5.36
812 813 2.367241 TCGTCCTTCATTGTCAGGAACA 59.633 45.455 8.40 0.00 41.05 3.18
813 814 2.737252 GTCGTCCTTCATTGTCAGGAAC 59.263 50.000 8.40 2.79 41.05 3.62
814 815 2.367241 TGTCGTCCTTCATTGTCAGGAA 59.633 45.455 8.40 0.00 41.05 3.36
815 816 1.967779 TGTCGTCCTTCATTGTCAGGA 59.032 47.619 3.93 3.93 36.80 3.86
816 817 2.455674 TGTCGTCCTTCATTGTCAGG 57.544 50.000 0.00 0.00 0.00 3.86
817 818 4.031765 CGTAATGTCGTCCTTCATTGTCAG 59.968 45.833 0.00 0.00 36.06 3.51
818 819 3.924073 CGTAATGTCGTCCTTCATTGTCA 59.076 43.478 0.00 0.00 36.06 3.58
819 820 3.306166 CCGTAATGTCGTCCTTCATTGTC 59.694 47.826 0.00 0.00 36.06 3.18
820 821 3.056393 TCCGTAATGTCGTCCTTCATTGT 60.056 43.478 0.00 0.00 36.06 2.71
821 822 3.517602 TCCGTAATGTCGTCCTTCATTG 58.482 45.455 0.00 0.00 36.06 2.82
822 823 3.880047 TCCGTAATGTCGTCCTTCATT 57.120 42.857 0.00 0.00 37.85 2.57
823 824 3.132289 ACATCCGTAATGTCGTCCTTCAT 59.868 43.478 0.00 0.00 45.78 2.57
824 825 2.494471 ACATCCGTAATGTCGTCCTTCA 59.506 45.455 0.00 0.00 45.78 3.02
825 826 3.160777 ACATCCGTAATGTCGTCCTTC 57.839 47.619 0.00 0.00 45.78 3.46
925 926 1.183549 GTACCAGGGTCGATCAGTGT 58.816 55.000 0.00 0.00 0.00 3.55
1105 1111 5.220989 CGATCTCCACATCAGCAAAATCATT 60.221 40.000 0.00 0.00 0.00 2.57
1311 1317 3.419580 ATGCGCTCCCAATCCCCA 61.420 61.111 9.73 0.00 0.00 4.96
1549 1744 1.583054 CGCAGCCTAACCCTAACATC 58.417 55.000 0.00 0.00 0.00 3.06
1914 2163 6.530120 TCCATCAGTTCTGTTGCTAGTTTTA 58.470 36.000 5.62 0.00 0.00 1.52
2351 2614 1.080974 CGTCCACCACTACGTCCAC 60.081 63.158 0.00 0.00 34.48 4.02
2367 2630 0.535102 CCTCCCAGAACAAAGCACGT 60.535 55.000 0.00 0.00 0.00 4.49
2369 2632 1.072331 TCTCCTCCCAGAACAAAGCAC 59.928 52.381 0.00 0.00 0.00 4.40
2392 2655 2.689553 TCAAGCACTGTCACTGACAA 57.310 45.000 12.92 0.00 42.26 3.18
2515 2778 4.441792 CGACAAAGATGATCCCACATACA 58.558 43.478 0.00 0.00 0.00 2.29
2685 2948 0.616891 GGAGCCCCGAAAAACCTAGA 59.383 55.000 0.00 0.00 0.00 2.43
3043 3306 6.065374 TCAACACATTCCCAAAAGTAGCTTA 58.935 36.000 0.00 0.00 0.00 3.09
3085 3348 2.343758 GTCAGCGAGTTGGCCTCA 59.656 61.111 3.32 0.00 40.48 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.