Multiple sequence alignment - TraesCS3B01G087300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G087300 chr3B 100.000 5441 0 0 1 5441 55408022 55402582 0.000000e+00 10048.0
1 TraesCS3B01G087300 chr3B 88.000 150 16 2 4428 4576 20069023 20068875 5.600000e-40 176.0
2 TraesCS3B01G087300 chr3B 89.362 141 13 2 4424 4564 692032658 692032796 5.600000e-40 176.0
3 TraesCS3B01G087300 chr3A 92.782 2674 138 26 1718 4349 45566853 45564193 0.000000e+00 3818.0
4 TraesCS3B01G087300 chr3A 87.719 684 34 22 975 1634 45568250 45567593 0.000000e+00 752.0
5 TraesCS3B01G087300 chr3A 94.565 92 2 1 4341 4429 45564166 45564075 7.350000e-29 139.0
6 TraesCS3B01G087300 chr3D 93.140 1866 87 19 2587 4429 33153310 33151463 0.000000e+00 2699.0
7 TraesCS3B01G087300 chr3D 87.412 1279 107 30 398 1652 33155799 33154551 0.000000e+00 1421.0
8 TraesCS3B01G087300 chr3D 91.406 512 25 4 2083 2588 33153970 33153472 0.000000e+00 684.0
9 TraesCS3B01G087300 chr3D 90.239 461 21 12 1653 2090 33154472 33154013 1.020000e-161 580.0
10 TraesCS3B01G087300 chr2B 91.423 1026 61 12 4428 5441 23988982 23989992 0.000000e+00 1382.0
11 TraesCS3B01G087300 chr2B 92.683 41 2 1 5107 5146 579693709 579693749 2.120000e-04 58.4
12 TraesCS3B01G087300 chr1B 91.220 1025 58 15 4431 5441 407907571 407906565 0.000000e+00 1365.0
13 TraesCS3B01G087300 chr1B 84.188 234 23 6 4424 4649 626691413 626691640 1.190000e-51 215.0
14 TraesCS3B01G087300 chr6B 91.892 407 29 2 1 403 43758536 43758942 2.840000e-157 566.0
15 TraesCS3B01G087300 chr6B 90.773 401 33 2 1 397 35934500 35934900 2.890000e-147 532.0
16 TraesCS3B01G087300 chr6B 86.420 162 21 1 4431 4592 422316394 422316234 5.600000e-40 176.0
17 TraesCS3B01G087300 chr6B 90.385 52 4 1 5020 5071 515092950 515093000 3.520000e-07 67.6
18 TraesCS3B01G087300 chr4A 91.045 402 32 3 1 398 740544771 740544370 1.720000e-149 540.0
19 TraesCS3B01G087300 chr4A 91.045 402 32 2 1 398 742040084 742039683 1.720000e-149 540.0
20 TraesCS3B01G087300 chr4A 90.547 402 34 2 1 398 739634296 739633895 3.730000e-146 529.0
21 TraesCS3B01G087300 chr4A 90.594 404 30 6 1 398 739848100 739847699 3.730000e-146 529.0
22 TraesCS3B01G087300 chr4A 90.299 134 13 0 4431 4564 730695014 730694881 5.600000e-40 176.0
23 TraesCS3B01G087300 chr4B 90.323 403 33 4 1 399 645645321 645644921 1.740000e-144 523.0
24 TraesCS3B01G087300 chr4B 90.323 403 33 4 1 399 645818794 645818394 1.740000e-144 523.0
25 TraesCS3B01G087300 chr4B 90.698 43 2 2 5031 5073 593402369 593402329 7.610000e-04 56.5
26 TraesCS3B01G087300 chr7B 90.274 401 35 2 1 397 721412397 721412797 6.250000e-144 521.0
27 TraesCS3B01G087300 chr7B 96.875 32 1 0 5024 5055 85020084 85020053 3.000000e-03 54.7
28 TraesCS3B01G087300 chr5D 86.364 154 21 0 4431 4584 378333333 378333180 9.370000e-38 169.0
29 TraesCS3B01G087300 chr5D 94.872 39 2 0 5031 5069 480979698 480979736 1.640000e-05 62.1
30 TraesCS3B01G087300 chr4D 89.916 119 12 0 4427 4545 14430493 14430611 2.620000e-33 154.0
31 TraesCS3B01G087300 chr2D 100.000 33 0 0 5034 5066 60075875 60075907 1.640000e-05 62.1
32 TraesCS3B01G087300 chr2A 92.683 41 2 1 5107 5146 640704163 640704123 2.120000e-04 58.4
33 TraesCS3B01G087300 chr5B 100.000 28 0 0 5061 5088 528670150 528670123 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G087300 chr3B 55402582 55408022 5440 True 10048.000000 10048 100.000000 1 5441 1 chr3B.!!$R2 5440
1 TraesCS3B01G087300 chr3A 45564075 45568250 4175 True 1569.666667 3818 91.688667 975 4429 3 chr3A.!!$R1 3454
2 TraesCS3B01G087300 chr3D 33151463 33155799 4336 True 1346.000000 2699 90.549250 398 4429 4 chr3D.!!$R1 4031
3 TraesCS3B01G087300 chr2B 23988982 23989992 1010 False 1382.000000 1382 91.423000 4428 5441 1 chr2B.!!$F1 1013
4 TraesCS3B01G087300 chr1B 407906565 407907571 1006 True 1365.000000 1365 91.220000 4431 5441 1 chr1B.!!$R1 1010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.034574 CCAACCGGGACCAATGATGA 60.035 55.0 6.32 0.0 40.01 2.92 F
1354 1407 0.037160 GGTGGCGGGTTTAAGAAGGA 59.963 55.0 0.00 0.0 0.00 3.36 F
1356 1409 0.322187 TGGCGGGTTTAAGAAGGAGC 60.322 55.0 0.00 0.0 0.00 4.70 F
1810 2530 0.746204 TCGTTGTCTGTTTGCCTGCA 60.746 50.0 0.00 0.0 0.00 4.41 F
3300 4279 0.253610 ACCCGAACTGACCAACACAA 59.746 50.0 0.00 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 2565 0.038599 TGCCACACAGCATTCATCCT 59.961 50.000 0.00 0.00 38.00 3.24 R
2990 3958 0.388263 GGGTGAACTCGACGAACCTC 60.388 60.000 14.39 5.27 0.00 3.85 R
3282 4254 0.944386 CTTGTGTTGGTCAGTTCGGG 59.056 55.000 0.00 0.00 0.00 5.14 R
3538 4528 0.698238 TACCTGCTTGTTGCCCTCAT 59.302 50.000 0.00 0.00 42.00 2.90 R
4683 5726 1.453148 GCAAGACAACGCTTCAATTGC 59.547 47.619 0.00 0.00 35.35 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.272212 GCATAGGAGGTGAGCTAGAGC 59.728 57.143 0.00 0.00 42.49 4.09
21 22 2.591923 CATAGGAGGTGAGCTAGAGCA 58.408 52.381 4.01 0.00 45.16 4.26
22 23 2.060050 TAGGAGGTGAGCTAGAGCAC 57.940 55.000 4.01 0.00 45.16 4.40
27 28 3.914984 GTGAGCTAGAGCACCACAA 57.085 52.632 16.95 0.00 45.16 3.33
28 29 2.169832 GTGAGCTAGAGCACCACAAA 57.830 50.000 16.95 0.00 45.16 2.83
29 30 2.494059 GTGAGCTAGAGCACCACAAAA 58.506 47.619 16.95 0.00 45.16 2.44
30 31 2.224314 GTGAGCTAGAGCACCACAAAAC 59.776 50.000 16.95 0.00 45.16 2.43
31 32 1.807142 GAGCTAGAGCACCACAAAACC 59.193 52.381 4.01 0.00 45.16 3.27
32 33 0.881796 GCTAGAGCACCACAAAACCC 59.118 55.000 0.00 0.00 41.59 4.11
33 34 1.545651 GCTAGAGCACCACAAAACCCT 60.546 52.381 0.00 0.00 41.59 4.34
34 35 2.427506 CTAGAGCACCACAAAACCCTC 58.572 52.381 0.00 0.00 0.00 4.30
35 36 0.846693 AGAGCACCACAAAACCCTCT 59.153 50.000 0.00 0.00 0.00 3.69
36 37 1.202818 AGAGCACCACAAAACCCTCTC 60.203 52.381 0.00 0.00 0.00 3.20
37 38 0.178990 AGCACCACAAAACCCTCTCC 60.179 55.000 0.00 0.00 0.00 3.71
38 39 0.178990 GCACCACAAAACCCTCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
39 40 1.897560 CACCACAAAACCCTCTCCTC 58.102 55.000 0.00 0.00 0.00 3.71
40 41 0.396811 ACCACAAAACCCTCTCCTCG 59.603 55.000 0.00 0.00 0.00 4.63
41 42 0.396811 CCACAAAACCCTCTCCTCGT 59.603 55.000 0.00 0.00 0.00 4.18
42 43 1.608283 CCACAAAACCCTCTCCTCGTC 60.608 57.143 0.00 0.00 0.00 4.20
43 44 0.317479 ACAAAACCCTCTCCTCGTCG 59.683 55.000 0.00 0.00 0.00 5.12
44 45 0.389948 CAAAACCCTCTCCTCGTCGG 60.390 60.000 0.00 0.00 0.00 4.79
45 46 2.168666 AAAACCCTCTCCTCGTCGGC 62.169 60.000 0.00 0.00 0.00 5.54
46 47 3.881019 AACCCTCTCCTCGTCGGCA 62.881 63.158 0.00 0.00 0.00 5.69
47 48 3.068691 CCCTCTCCTCGTCGGCAA 61.069 66.667 0.00 0.00 0.00 4.52
48 49 2.492090 CCTCTCCTCGTCGGCAAG 59.508 66.667 0.00 0.00 0.00 4.01
49 50 2.046864 CCTCTCCTCGTCGGCAAGA 61.047 63.158 0.00 0.00 0.00 3.02
50 51 1.595993 CCTCTCCTCGTCGGCAAGAA 61.596 60.000 0.00 0.00 0.00 2.52
51 52 0.243907 CTCTCCTCGTCGGCAAGAAA 59.756 55.000 0.00 0.00 0.00 2.52
52 53 0.677288 TCTCCTCGTCGGCAAGAAAA 59.323 50.000 0.00 0.00 0.00 2.29
53 54 1.069513 TCTCCTCGTCGGCAAGAAAAA 59.930 47.619 0.00 0.00 0.00 1.94
78 79 2.021355 GCAGTATGAAGTGCTCTGCT 57.979 50.000 7.98 0.00 46.68 4.24
79 80 3.170791 GCAGTATGAAGTGCTCTGCTA 57.829 47.619 7.98 0.00 46.68 3.49
80 81 3.122297 GCAGTATGAAGTGCTCTGCTAG 58.878 50.000 7.98 0.00 46.68 3.42
81 82 3.122297 CAGTATGAAGTGCTCTGCTAGC 58.878 50.000 8.10 8.10 46.69 3.42
82 83 4.044571 CAGTATGAAGTGCTCTGCTAGCC 61.045 52.174 13.29 0.00 46.13 3.93
88 89 4.940593 GCTCTGCTAGCCGGCGAG 62.941 72.222 29.96 29.96 46.25 5.03
89 90 4.277593 CTCTGCTAGCCGGCGAGG 62.278 72.222 33.55 22.19 44.97 4.63
94 95 4.908487 CTAGCCGGCGAGGGGGTA 62.908 72.222 27.18 8.86 41.48 3.69
95 96 4.229073 TAGCCGGCGAGGGGGTAT 62.229 66.667 23.20 1.83 41.48 2.73
96 97 2.776370 CTAGCCGGCGAGGGGGTATA 62.776 65.000 27.18 7.36 41.48 1.47
97 98 2.159101 TAGCCGGCGAGGGGGTATAT 62.159 60.000 23.20 0.33 41.48 0.86
98 99 1.683365 GCCGGCGAGGGGGTATATA 60.683 63.158 12.58 0.00 41.48 0.86
99 100 1.047034 GCCGGCGAGGGGGTATATAT 61.047 60.000 12.58 0.00 41.48 0.86
100 101 1.755265 GCCGGCGAGGGGGTATATATA 60.755 57.143 12.58 0.00 41.48 0.86
101 102 2.236766 CCGGCGAGGGGGTATATATAG 58.763 57.143 9.30 0.00 35.97 1.31
102 103 2.236766 CGGCGAGGGGGTATATATAGG 58.763 57.143 0.00 0.00 0.00 2.57
103 104 1.969208 GGCGAGGGGGTATATATAGGC 59.031 57.143 0.00 0.00 0.00 3.93
104 105 2.674420 GCGAGGGGGTATATATAGGCA 58.326 52.381 0.00 0.00 0.00 4.75
105 106 2.364647 GCGAGGGGGTATATATAGGCAC 59.635 54.545 0.00 0.00 0.00 5.01
106 107 3.638860 CGAGGGGGTATATATAGGCACA 58.361 50.000 0.00 0.00 0.00 4.57
107 108 4.223953 CGAGGGGGTATATATAGGCACAT 58.776 47.826 0.00 0.00 0.00 3.21
108 109 4.281182 CGAGGGGGTATATATAGGCACATC 59.719 50.000 0.00 0.00 0.00 3.06
109 110 5.216622 GAGGGGGTATATATAGGCACATCA 58.783 45.833 0.00 0.00 0.00 3.07
110 111 5.804013 AGGGGGTATATATAGGCACATCAT 58.196 41.667 0.00 0.00 0.00 2.45
111 112 6.220329 AGGGGGTATATATAGGCACATCATT 58.780 40.000 0.00 0.00 0.00 2.57
112 113 6.101734 AGGGGGTATATATAGGCACATCATTG 59.898 42.308 0.00 0.00 0.00 2.82
113 114 6.299141 GGGGTATATATAGGCACATCATTGG 58.701 44.000 0.00 0.00 0.00 3.16
114 115 6.126478 GGGGTATATATAGGCACATCATTGGT 60.126 42.308 0.00 0.00 0.00 3.67
115 116 6.992715 GGGTATATATAGGCACATCATTGGTC 59.007 42.308 0.00 0.00 0.00 4.02
116 117 6.992715 GGTATATATAGGCACATCATTGGTCC 59.007 42.308 0.00 0.00 0.00 4.46
117 118 2.664402 ATAGGCACATCATTGGTCCC 57.336 50.000 0.00 0.00 0.00 4.46
118 119 0.180171 TAGGCACATCATTGGTCCCG 59.820 55.000 0.00 0.00 0.00 5.14
119 120 2.120909 GGCACATCATTGGTCCCGG 61.121 63.158 0.00 0.00 0.00 5.73
120 121 1.378514 GCACATCATTGGTCCCGGT 60.379 57.895 0.00 0.00 0.00 5.28
121 122 0.965363 GCACATCATTGGTCCCGGTT 60.965 55.000 0.00 0.00 0.00 4.44
122 123 1.094785 CACATCATTGGTCCCGGTTC 58.905 55.000 0.00 0.00 0.00 3.62
123 124 0.392461 ACATCATTGGTCCCGGTTCG 60.392 55.000 0.00 0.00 0.00 3.95
124 125 0.392461 CATCATTGGTCCCGGTTCGT 60.392 55.000 0.00 0.00 0.00 3.85
125 126 0.392461 ATCATTGGTCCCGGTTCGTG 60.392 55.000 0.00 0.00 0.00 4.35
126 127 2.038269 CATTGGTCCCGGTTCGTGG 61.038 63.158 0.00 0.00 0.00 4.94
127 128 3.912745 ATTGGTCCCGGTTCGTGGC 62.913 63.158 0.00 0.00 0.00 5.01
129 130 4.324991 GGTCCCGGTTCGTGGCTT 62.325 66.667 0.00 0.00 0.00 4.35
130 131 3.047877 GTCCCGGTTCGTGGCTTG 61.048 66.667 0.00 0.00 0.00 4.01
131 132 3.235481 TCCCGGTTCGTGGCTTGA 61.235 61.111 0.00 0.00 0.00 3.02
132 133 2.281208 CCCGGTTCGTGGCTTGAA 60.281 61.111 0.00 0.00 0.00 2.69
133 134 2.613506 CCCGGTTCGTGGCTTGAAC 61.614 63.158 0.00 12.15 43.87 3.18
136 137 4.036977 GTTCGTGGCTTGAACCGA 57.963 55.556 10.16 0.00 39.80 4.69
137 138 1.860078 GTTCGTGGCTTGAACCGAG 59.140 57.895 10.16 0.00 39.80 4.63
138 139 0.599204 GTTCGTGGCTTGAACCGAGA 60.599 55.000 10.16 0.00 39.80 4.04
139 140 0.599204 TTCGTGGCTTGAACCGAGAC 60.599 55.000 0.00 0.00 0.00 3.36
140 141 1.006102 CGTGGCTTGAACCGAGACT 60.006 57.895 0.00 0.00 0.00 3.24
141 142 0.242825 CGTGGCTTGAACCGAGACTA 59.757 55.000 0.00 0.00 0.00 2.59
142 143 1.336517 CGTGGCTTGAACCGAGACTAA 60.337 52.381 0.00 0.00 0.00 2.24
143 144 2.762745 GTGGCTTGAACCGAGACTAAA 58.237 47.619 0.00 0.00 0.00 1.85
144 145 2.737252 GTGGCTTGAACCGAGACTAAAG 59.263 50.000 0.00 0.00 0.00 1.85
145 146 2.289444 TGGCTTGAACCGAGACTAAAGG 60.289 50.000 0.00 0.00 0.00 3.11
146 147 2.028385 GGCTTGAACCGAGACTAAAGGA 60.028 50.000 0.00 0.00 0.00 3.36
147 148 2.994578 GCTTGAACCGAGACTAAAGGAC 59.005 50.000 0.00 0.00 0.00 3.85
148 149 3.554337 GCTTGAACCGAGACTAAAGGACA 60.554 47.826 0.00 0.00 0.00 4.02
149 150 3.655276 TGAACCGAGACTAAAGGACAC 57.345 47.619 0.00 0.00 0.00 3.67
150 151 2.298163 TGAACCGAGACTAAAGGACACC 59.702 50.000 0.00 0.00 0.00 4.16
151 152 1.264295 ACCGAGACTAAAGGACACCC 58.736 55.000 0.00 0.00 0.00 4.61
161 162 2.033602 GGACACCCTTTGGTCCCG 59.966 66.667 0.00 0.00 45.57 5.14
162 163 2.033602 GACACCCTTTGGTCCCGG 59.966 66.667 0.00 0.00 45.57 5.73
163 164 2.775219 ACACCCTTTGGTCCCGGT 60.775 61.111 0.00 0.00 45.57 5.28
164 165 2.347691 GACACCCTTTGGTCCCGGTT 62.348 60.000 0.00 0.00 45.57 4.44
165 166 1.602605 CACCCTTTGGTCCCGGTTC 60.603 63.158 0.00 0.00 45.57 3.62
166 167 2.079911 ACCCTTTGGTCCCGGTTCA 61.080 57.895 0.00 0.00 43.06 3.18
167 168 1.151908 CCCTTTGGTCCCGGTTCAA 59.848 57.895 0.00 0.00 0.00 2.69
168 169 0.893727 CCCTTTGGTCCCGGTTCAAG 60.894 60.000 0.00 0.00 0.00 3.02
169 170 1.524008 CCTTTGGTCCCGGTTCAAGC 61.524 60.000 0.00 0.00 0.00 4.01
170 171 1.524008 CTTTGGTCCCGGTTCAAGCC 61.524 60.000 0.00 0.00 0.00 4.35
171 172 2.285889 TTTGGTCCCGGTTCAAGCCA 62.286 55.000 0.00 0.00 0.00 4.75
172 173 2.671963 GGTCCCGGTTCAAGCCAC 60.672 66.667 0.00 0.00 0.00 5.01
173 174 2.671963 GTCCCGGTTCAAGCCACC 60.672 66.667 0.00 0.00 0.00 4.61
174 175 3.172106 TCCCGGTTCAAGCCACCA 61.172 61.111 0.00 0.00 33.36 4.17
175 176 2.203422 CCCGGTTCAAGCCACCAA 60.203 61.111 0.00 0.00 33.36 3.67
176 177 2.561037 CCCGGTTCAAGCCACCAAC 61.561 63.158 0.00 0.00 33.36 3.77
177 178 2.561037 CCGGTTCAAGCCACCAACC 61.561 63.158 0.00 0.00 36.91 3.77
178 179 3.039134 GGTTCAAGCCACCAACCG 58.961 61.111 0.00 0.00 34.04 4.44
179 180 2.561037 GGTTCAAGCCACCAACCGG 61.561 63.158 0.00 0.00 34.04 5.28
180 181 2.203422 TTCAAGCCACCAACCGGG 60.203 61.111 6.32 0.00 44.81 5.73
181 182 2.758207 TTCAAGCCACCAACCGGGA 61.758 57.895 6.32 0.00 41.15 5.14
182 183 2.969300 TTCAAGCCACCAACCGGGAC 62.969 60.000 6.32 0.00 41.15 4.46
183 184 4.280019 AAGCCACCAACCGGGACC 62.280 66.667 6.32 0.00 41.15 4.46
185 186 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
186 187 2.438795 CCACCAACCGGGACCAAT 59.561 61.111 6.32 0.00 41.15 3.16
187 188 1.976474 CCACCAACCGGGACCAATG 60.976 63.158 6.32 0.00 41.15 2.82
188 189 1.074072 CACCAACCGGGACCAATGA 59.926 57.895 6.32 0.00 41.15 2.57
189 190 0.323360 CACCAACCGGGACCAATGAT 60.323 55.000 6.32 0.00 41.15 2.45
190 191 0.323360 ACCAACCGGGACCAATGATG 60.323 55.000 6.32 0.00 41.15 3.07
191 192 0.034574 CCAACCGGGACCAATGATGA 60.035 55.000 6.32 0.00 40.01 2.92
192 193 1.410083 CCAACCGGGACCAATGATGAT 60.410 52.381 6.32 0.00 40.01 2.45
193 194 1.677576 CAACCGGGACCAATGATGATG 59.322 52.381 6.32 0.00 0.00 3.07
194 195 0.183492 ACCGGGACCAATGATGATGG 59.817 55.000 6.32 0.00 43.84 3.51
195 196 0.538057 CCGGGACCAATGATGATGGG 60.538 60.000 0.00 0.00 42.48 4.00
196 197 1.174712 CGGGACCAATGATGATGGGC 61.175 60.000 0.00 0.00 45.89 5.36
198 199 3.518766 GACCAATGATGATGGGCCA 57.481 52.632 9.61 9.61 40.33 5.36
199 200 1.325355 GACCAATGATGATGGGCCAG 58.675 55.000 13.78 0.00 40.33 4.85
200 201 0.105862 ACCAATGATGATGGGCCAGG 60.106 55.000 13.78 7.57 42.48 4.45
201 202 0.186630 CCAATGATGATGGGCCAGGA 59.813 55.000 13.78 0.00 34.15 3.86
202 203 1.617322 CAATGATGATGGGCCAGGAG 58.383 55.000 13.78 0.00 0.00 3.69
203 204 0.178970 AATGATGATGGGCCAGGAGC 60.179 55.000 13.78 3.87 42.60 4.70
204 205 2.281345 GATGATGGGCCAGGAGCG 60.281 66.667 13.78 0.00 45.17 5.03
205 206 2.769621 ATGATGGGCCAGGAGCGA 60.770 61.111 13.78 0.00 45.17 4.93
206 207 2.728443 GATGATGGGCCAGGAGCGAG 62.728 65.000 13.78 0.00 45.17 5.03
207 208 4.247380 GATGGGCCAGGAGCGAGG 62.247 72.222 13.78 0.00 45.17 4.63
213 214 3.801997 CCAGGAGCGAGGCCCATT 61.802 66.667 0.00 0.00 0.00 3.16
214 215 2.515523 CAGGAGCGAGGCCCATTG 60.516 66.667 0.00 0.00 0.00 2.82
215 216 2.688666 AGGAGCGAGGCCCATTGA 60.689 61.111 0.00 0.00 0.00 2.57
216 217 2.074948 AGGAGCGAGGCCCATTGAT 61.075 57.895 0.00 0.00 0.00 2.57
217 218 1.152881 GGAGCGAGGCCCATTGATT 60.153 57.895 0.00 0.00 0.00 2.57
218 219 1.169034 GGAGCGAGGCCCATTGATTC 61.169 60.000 0.00 0.00 0.00 2.52
219 220 1.152881 AGCGAGGCCCATTGATTCC 60.153 57.895 0.00 0.00 0.00 3.01
220 221 2.546494 GCGAGGCCCATTGATTCCG 61.546 63.158 0.00 0.00 0.00 4.30
221 222 1.893808 CGAGGCCCATTGATTCCGG 60.894 63.158 0.00 0.00 0.00 5.14
222 223 1.227383 GAGGCCCATTGATTCCGGT 59.773 57.895 0.00 0.00 0.00 5.28
223 224 0.395724 GAGGCCCATTGATTCCGGTT 60.396 55.000 0.00 0.00 0.00 4.44
224 225 0.395724 AGGCCCATTGATTCCGGTTC 60.396 55.000 0.00 0.09 0.00 3.62
225 226 1.724582 GGCCCATTGATTCCGGTTCG 61.725 60.000 0.00 0.00 0.00 3.95
226 227 1.029947 GCCCATTGATTCCGGTTCGT 61.030 55.000 0.00 0.00 0.00 3.85
227 228 1.014352 CCCATTGATTCCGGTTCGTC 58.986 55.000 0.00 0.00 0.00 4.20
228 229 1.406887 CCCATTGATTCCGGTTCGTCT 60.407 52.381 0.00 0.00 0.00 4.18
229 230 1.933853 CCATTGATTCCGGTTCGTCTC 59.066 52.381 0.00 0.00 0.00 3.36
230 231 2.616960 CATTGATTCCGGTTCGTCTCA 58.383 47.619 0.00 0.00 0.00 3.27
231 232 2.074547 TTGATTCCGGTTCGTCTCAC 57.925 50.000 0.00 0.00 0.00 3.51
232 233 0.245539 TGATTCCGGTTCGTCTCACC 59.754 55.000 0.00 0.00 0.00 4.02
233 234 0.245539 GATTCCGGTTCGTCTCACCA 59.754 55.000 0.00 0.00 33.36 4.17
234 235 0.682852 ATTCCGGTTCGTCTCACCAA 59.317 50.000 0.00 0.00 33.36 3.67
235 236 0.249573 TTCCGGTTCGTCTCACCAAC 60.250 55.000 0.00 0.00 33.36 3.77
236 237 1.666872 CCGGTTCGTCTCACCAACC 60.667 63.158 0.00 0.00 36.91 3.77
237 238 3.946907 GGTTCGTCTCACCAACCG 58.053 61.111 0.00 0.00 34.04 4.44
238 239 1.666872 GGTTCGTCTCACCAACCGG 60.667 63.158 0.00 0.00 34.04 5.28
239 240 1.666872 GTTCGTCTCACCAACCGGG 60.667 63.158 6.32 0.00 44.81 5.73
240 241 1.833492 TTCGTCTCACCAACCGGGA 60.833 57.895 6.32 0.00 41.15 5.14
241 242 2.048503 CGTCTCACCAACCGGGAC 60.049 66.667 6.32 0.00 41.15 4.46
242 243 2.346365 GTCTCACCAACCGGGACC 59.654 66.667 6.32 0.00 41.15 4.46
243 244 2.122769 TCTCACCAACCGGGACCA 60.123 61.111 6.32 0.00 41.15 4.02
244 245 1.766864 TCTCACCAACCGGGACCAA 60.767 57.895 6.32 0.00 41.15 3.67
245 246 1.149627 CTCACCAACCGGGACCAAA 59.850 57.895 6.32 0.00 41.15 3.28
246 247 0.466555 CTCACCAACCGGGACCAAAA 60.467 55.000 6.32 0.00 41.15 2.44
247 248 0.466555 TCACCAACCGGGACCAAAAG 60.467 55.000 6.32 0.00 41.15 2.27
248 249 1.152631 ACCAACCGGGACCAAAAGG 60.153 57.895 6.32 0.00 41.15 3.11
249 250 1.906333 CCAACCGGGACCAAAAGGG 60.906 63.158 6.32 0.00 44.81 3.95
250 251 2.203582 AACCGGGACCAAAAGGGC 60.204 61.111 6.32 0.00 42.05 5.19
251 252 3.820825 AACCGGGACCAAAAGGGCC 62.821 63.158 6.32 0.00 42.05 5.80
252 253 4.293671 CCGGGACCAAAAGGGCCA 62.294 66.667 8.96 0.00 42.05 5.36
253 254 2.676471 CGGGACCAAAAGGGCCAG 60.676 66.667 8.96 0.00 42.05 4.85
254 255 2.851045 GGGACCAAAAGGGCCAGA 59.149 61.111 8.96 0.00 42.05 3.86
255 256 1.155155 GGGACCAAAAGGGCCAGAA 59.845 57.895 8.96 0.00 42.05 3.02
256 257 1.185618 GGGACCAAAAGGGCCAGAAC 61.186 60.000 8.96 0.00 42.05 3.01
257 258 1.185618 GGACCAAAAGGGCCAGAACC 61.186 60.000 6.18 0.00 42.05 3.62
258 259 1.524008 GACCAAAAGGGCCAGAACCG 61.524 60.000 6.18 0.00 42.05 4.44
259 260 2.275380 CCAAAAGGGCCAGAACCGG 61.275 63.158 6.18 0.00 0.00 5.28
260 261 2.117423 AAAAGGGCCAGAACCGGG 59.883 61.111 6.32 0.00 0.00 5.73
261 262 2.466186 AAAAGGGCCAGAACCGGGA 61.466 57.895 6.32 0.00 0.00 5.14
262 263 2.708593 AAAAGGGCCAGAACCGGGAC 62.709 60.000 6.32 0.00 0.00 4.46
265 266 3.961414 GGCCAGAACCGGGACCAA 61.961 66.667 6.32 0.00 0.00 3.67
266 267 2.355115 GCCAGAACCGGGACCAAT 59.645 61.111 6.32 0.00 0.00 3.16
267 268 2.046285 GCCAGAACCGGGACCAATG 61.046 63.158 6.32 0.00 0.00 2.82
268 269 2.046285 CCAGAACCGGGACCAATGC 61.046 63.158 6.32 0.00 0.00 3.56
269 270 2.046285 CAGAACCGGGACCAATGCC 61.046 63.158 6.32 0.00 0.00 4.40
270 271 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
271 272 4.376170 AACCGGGACCAATGCCCC 62.376 66.667 6.32 0.00 42.92 5.80
276 277 4.041762 GGACCAATGCCCCCACGA 62.042 66.667 0.00 0.00 0.00 4.35
277 278 2.438434 GACCAATGCCCCCACGAG 60.438 66.667 0.00 0.00 0.00 4.18
278 279 3.995506 GACCAATGCCCCCACGAGG 62.996 68.421 0.00 0.00 0.00 4.63
305 306 4.410400 CCCCCTGGCCTCACGAAC 62.410 72.222 3.32 0.00 0.00 3.95
306 307 4.410400 CCCCTGGCCTCACGAACC 62.410 72.222 3.32 0.00 0.00 3.62
307 308 4.760047 CCCTGGCCTCACGAACCG 62.760 72.222 3.32 0.00 0.00 4.44
308 309 4.760047 CCTGGCCTCACGAACCGG 62.760 72.222 3.32 0.00 0.00 5.28
309 310 4.760047 CTGGCCTCACGAACCGGG 62.760 72.222 6.32 0.00 0.00 5.73
311 312 4.754667 GGCCTCACGAACCGGGAC 62.755 72.222 6.32 0.00 32.99 4.46
312 313 4.754667 GCCTCACGAACCGGGACC 62.755 72.222 6.32 0.00 32.99 4.46
313 314 3.307906 CCTCACGAACCGGGACCA 61.308 66.667 6.32 0.00 32.99 4.02
314 315 2.738480 CTCACGAACCGGGACCAA 59.262 61.111 6.32 0.00 32.99 3.67
315 316 1.295423 CTCACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 32.99 3.16
316 317 1.004320 TCACGAACCGGGACCAATG 60.004 57.895 6.32 0.00 32.99 2.82
317 318 2.359478 ACGAACCGGGACCAATGC 60.359 61.111 6.32 0.00 0.00 3.56
318 319 3.131478 CGAACCGGGACCAATGCC 61.131 66.667 6.32 0.00 0.00 4.40
319 320 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
320 321 3.264845 AACCGGGACCAATGCCCT 61.265 61.111 6.32 0.00 43.72 5.19
321 322 1.917336 GAACCGGGACCAATGCCCTA 61.917 60.000 6.32 0.00 43.72 3.53
322 323 1.286305 AACCGGGACCAATGCCCTAT 61.286 55.000 6.32 0.00 43.72 2.57
323 324 1.228245 CCGGGACCAATGCCCTATG 60.228 63.158 0.00 0.00 43.72 2.23
324 325 1.705002 CCGGGACCAATGCCCTATGA 61.705 60.000 0.00 0.00 43.72 2.15
325 326 0.182537 CGGGACCAATGCCCTATGAA 59.817 55.000 0.00 0.00 43.72 2.57
326 327 1.202927 CGGGACCAATGCCCTATGAAT 60.203 52.381 0.00 0.00 43.72 2.57
327 328 2.519013 GGGACCAATGCCCTATGAATC 58.481 52.381 0.00 0.00 42.56 2.52
328 329 2.519013 GGACCAATGCCCTATGAATCC 58.481 52.381 0.00 0.00 0.00 3.01
329 330 2.519013 GACCAATGCCCTATGAATCCC 58.481 52.381 0.00 0.00 0.00 3.85
330 331 1.202927 ACCAATGCCCTATGAATCCCG 60.203 52.381 0.00 0.00 0.00 5.14
331 332 1.538047 CAATGCCCTATGAATCCCGG 58.462 55.000 0.00 0.00 0.00 5.73
332 333 1.149101 AATGCCCTATGAATCCCGGT 58.851 50.000 0.00 0.00 0.00 5.28
333 334 1.149101 ATGCCCTATGAATCCCGGTT 58.851 50.000 0.00 0.00 0.00 4.44
334 335 0.472471 TGCCCTATGAATCCCGGTTC 59.528 55.000 0.00 0.00 0.00 3.62
335 336 0.602905 GCCCTATGAATCCCGGTTCG 60.603 60.000 0.00 0.00 0.00 3.95
336 337 0.756903 CCCTATGAATCCCGGTTCGT 59.243 55.000 0.00 2.43 0.00 3.85
337 338 1.965643 CCCTATGAATCCCGGTTCGTA 59.034 52.381 0.00 3.61 0.00 3.43
338 339 2.366266 CCCTATGAATCCCGGTTCGTAA 59.634 50.000 0.00 0.00 31.25 3.18
339 340 3.387397 CCTATGAATCCCGGTTCGTAAC 58.613 50.000 0.00 0.00 31.25 2.50
340 341 3.069158 CCTATGAATCCCGGTTCGTAACT 59.931 47.826 0.00 0.00 31.25 2.24
341 342 2.373540 TGAATCCCGGTTCGTAACTG 57.626 50.000 0.00 0.00 37.52 3.16
342 343 1.894466 TGAATCCCGGTTCGTAACTGA 59.106 47.619 0.00 0.00 40.26 3.41
343 344 2.299582 TGAATCCCGGTTCGTAACTGAA 59.700 45.455 0.00 0.00 40.26 3.02
344 345 2.375173 ATCCCGGTTCGTAACTGAAC 57.625 50.000 0.00 0.00 45.91 3.18
349 350 3.892200 GTTCGTAACTGAACCGGGA 57.108 52.632 6.32 0.00 41.88 5.14
350 351 1.422388 GTTCGTAACTGAACCGGGAC 58.578 55.000 6.32 0.00 41.88 4.46
351 352 1.000171 GTTCGTAACTGAACCGGGACT 60.000 52.381 6.32 0.00 41.88 3.85
352 353 2.198827 TCGTAACTGAACCGGGACTA 57.801 50.000 6.32 0.00 0.00 2.59
353 354 2.513753 TCGTAACTGAACCGGGACTAA 58.486 47.619 6.32 0.00 0.00 2.24
354 355 3.091545 TCGTAACTGAACCGGGACTAAT 58.908 45.455 6.32 0.00 0.00 1.73
355 356 3.119388 TCGTAACTGAACCGGGACTAATG 60.119 47.826 6.32 0.00 0.00 1.90
356 357 2.781681 AACTGAACCGGGACTAATGG 57.218 50.000 6.32 0.00 0.00 3.16
357 358 0.909623 ACTGAACCGGGACTAATGGG 59.090 55.000 6.32 0.00 0.00 4.00
358 359 0.909623 CTGAACCGGGACTAATGGGT 59.090 55.000 6.32 0.00 0.00 4.51
359 360 1.280998 CTGAACCGGGACTAATGGGTT 59.719 52.381 6.32 0.00 45.02 4.11
360 361 1.706305 TGAACCGGGACTAATGGGTTT 59.294 47.619 6.32 0.00 42.54 3.27
361 362 2.911636 TGAACCGGGACTAATGGGTTTA 59.088 45.455 6.32 0.00 42.54 2.01
362 363 3.524380 TGAACCGGGACTAATGGGTTTAT 59.476 43.478 6.32 0.00 42.54 1.40
363 364 3.851458 ACCGGGACTAATGGGTTTATC 57.149 47.619 6.32 0.00 0.00 1.75
364 365 3.390819 ACCGGGACTAATGGGTTTATCT 58.609 45.455 6.32 0.00 0.00 1.98
365 366 3.135895 ACCGGGACTAATGGGTTTATCTG 59.864 47.826 6.32 0.00 0.00 2.90
366 367 3.496160 CCGGGACTAATGGGTTTATCTGG 60.496 52.174 0.00 0.00 0.00 3.86
367 368 3.487372 GGGACTAATGGGTTTATCTGGC 58.513 50.000 0.00 0.00 0.00 4.85
368 369 3.487372 GGACTAATGGGTTTATCTGGCC 58.513 50.000 0.00 0.00 0.00 5.36
369 370 3.138468 GGACTAATGGGTTTATCTGGCCT 59.862 47.826 3.32 0.00 0.00 5.19
370 371 4.137543 GACTAATGGGTTTATCTGGCCTG 58.862 47.826 3.32 2.92 0.00 4.85
371 372 3.785887 ACTAATGGGTTTATCTGGCCTGA 59.214 43.478 15.40 15.40 0.00 3.86
372 373 3.756082 AATGGGTTTATCTGGCCTGAA 57.244 42.857 17.04 3.58 0.00 3.02
373 374 2.507407 TGGGTTTATCTGGCCTGAAC 57.493 50.000 17.04 10.18 0.00 3.18
374 375 1.339631 TGGGTTTATCTGGCCTGAACG 60.340 52.381 17.04 0.00 0.00 3.95
375 376 1.065709 GGGTTTATCTGGCCTGAACGA 60.066 52.381 17.04 2.36 0.00 3.85
376 377 2.617021 GGGTTTATCTGGCCTGAACGAA 60.617 50.000 17.04 8.45 0.00 3.85
377 378 3.078837 GGTTTATCTGGCCTGAACGAAA 58.921 45.455 17.04 13.56 0.00 3.46
378 379 3.694566 GGTTTATCTGGCCTGAACGAAAT 59.305 43.478 17.04 1.31 0.00 2.17
379 380 4.201920 GGTTTATCTGGCCTGAACGAAATC 60.202 45.833 17.04 12.99 0.00 2.17
380 381 2.044123 ATCTGGCCTGAACGAAATCC 57.956 50.000 17.04 0.00 0.00 3.01
381 382 0.984230 TCTGGCCTGAACGAAATCCT 59.016 50.000 10.32 0.00 0.00 3.24
382 383 1.351017 TCTGGCCTGAACGAAATCCTT 59.649 47.619 10.32 0.00 0.00 3.36
383 384 1.470098 CTGGCCTGAACGAAATCCTTG 59.530 52.381 3.32 0.00 0.00 3.61
384 385 1.202879 TGGCCTGAACGAAATCCTTGT 60.203 47.619 3.32 0.00 0.00 3.16
385 386 1.886542 GGCCTGAACGAAATCCTTGTT 59.113 47.619 0.00 0.00 0.00 2.83
386 387 2.296190 GGCCTGAACGAAATCCTTGTTT 59.704 45.455 0.00 0.00 0.00 2.83
387 388 3.243737 GGCCTGAACGAAATCCTTGTTTT 60.244 43.478 0.00 0.00 0.00 2.43
388 389 3.981416 GCCTGAACGAAATCCTTGTTTTC 59.019 43.478 0.00 0.00 0.00 2.29
389 390 4.261614 GCCTGAACGAAATCCTTGTTTTCT 60.262 41.667 0.00 0.00 32.18 2.52
390 391 5.048991 GCCTGAACGAAATCCTTGTTTTCTA 60.049 40.000 0.00 0.00 32.18 2.10
391 392 6.371389 CCTGAACGAAATCCTTGTTTTCTAC 58.629 40.000 0.00 0.00 32.18 2.59
392 393 6.204882 CCTGAACGAAATCCTTGTTTTCTACT 59.795 38.462 0.00 0.00 32.18 2.57
393 394 7.386848 CCTGAACGAAATCCTTGTTTTCTACTA 59.613 37.037 0.00 0.00 32.18 1.82
394 395 8.306680 TGAACGAAATCCTTGTTTTCTACTAG 57.693 34.615 0.00 0.00 32.18 2.57
395 396 7.929785 TGAACGAAATCCTTGTTTTCTACTAGT 59.070 33.333 0.00 0.00 32.18 2.57
396 397 7.653767 ACGAAATCCTTGTTTTCTACTAGTG 57.346 36.000 5.39 0.00 32.18 2.74
427 428 5.620738 TGCTGATTGAGTAGCTAATCCTT 57.379 39.130 17.93 5.77 40.52 3.36
430 431 6.051717 GCTGATTGAGTAGCTAATCCTTCAA 58.948 40.000 17.93 11.97 36.99 2.69
490 491 3.759618 AGAGGAGAGTTCAGGTAAGTTCG 59.240 47.826 0.00 0.00 0.00 3.95
492 493 2.561858 GGAGAGTTCAGGTAAGTTCGGT 59.438 50.000 0.00 0.00 0.00 4.69
543 544 3.595173 TGCACACTACATACATCCACAC 58.405 45.455 0.00 0.00 0.00 3.82
547 557 5.344066 CACACTACATACATCCACACTCTC 58.656 45.833 0.00 0.00 0.00 3.20
552 562 5.489792 ACATACATCCACACTCTCTGTTT 57.510 39.130 0.00 0.00 0.00 2.83
569 579 9.178758 CTCTCTGTTTTACATTTTAGCCCTTAT 57.821 33.333 0.00 0.00 0.00 1.73
572 582 9.969001 TCTGTTTTACATTTTAGCCCTTATACT 57.031 29.630 0.00 0.00 0.00 2.12
578 588 7.447510 ACATTTTAGCCCTTATACTACACCT 57.552 36.000 0.00 0.00 0.00 4.00
585 595 6.827727 AGCCCTTATACTACACCTAACAATG 58.172 40.000 0.00 0.00 0.00 2.82
586 596 6.614087 AGCCCTTATACTACACCTAACAATGA 59.386 38.462 0.00 0.00 0.00 2.57
595 605 5.036117 ACACCTAACAATGACACTCAACT 57.964 39.130 0.00 0.00 0.00 3.16
609 619 5.894807 ACACTCAACTCTCCAACAAAAATG 58.105 37.500 0.00 0.00 0.00 2.32
610 620 5.163519 ACACTCAACTCTCCAACAAAAATGG 60.164 40.000 0.00 0.00 39.41 3.16
616 626 2.621055 TCTCCAACAAAAATGGTCGTGG 59.379 45.455 0.00 0.00 39.09 4.94
617 627 1.683917 TCCAACAAAAATGGTCGTGGG 59.316 47.619 0.00 0.00 39.09 4.61
619 629 2.623889 CCAACAAAAATGGTCGTGGGTA 59.376 45.455 0.00 0.00 33.08 3.69
622 632 2.619646 ACAAAAATGGTCGTGGGTACAC 59.380 45.455 0.00 0.00 44.23 2.90
640 650 5.163519 GGTACACAATTTTCTCCATGATGGG 60.164 44.000 12.26 2.55 38.32 4.00
646 656 6.896860 ACAATTTTCTCCATGATGGGAATACA 59.103 34.615 12.26 2.78 38.32 2.29
647 657 7.566138 ACAATTTTCTCCATGATGGGAATACAT 59.434 33.333 12.26 4.71 38.32 2.29
678 688 5.422666 CTGACAAGCACACAGTGAATTTA 57.577 39.130 7.81 0.00 35.23 1.40
747 759 8.630037 TGGAAAACAGAAAAGGTAAATCTCTTC 58.370 33.333 0.00 0.00 0.00 2.87
842 862 2.813179 CTCTGGCACGGCAATACGC 61.813 63.158 0.00 0.00 41.28 4.42
847 867 2.394136 CACGGCAATACGCACGTC 59.606 61.111 0.00 0.00 42.93 4.34
890 910 0.039527 AACGCAAGGTCGAAAATGGC 60.040 50.000 0.00 0.00 46.39 4.40
891 911 1.511887 CGCAAGGTCGAAAATGGCG 60.512 57.895 5.56 5.56 36.93 5.69
905 925 1.305930 ATGGCGTCCTTCCTTTTCGC 61.306 55.000 0.00 0.00 44.95 4.70
910 930 0.960861 GTCCTTCCTTTTCGCAGGGG 60.961 60.000 0.00 0.00 34.24 4.79
919 939 2.642154 TTTCGCAGGGGAACAGTAAA 57.358 45.000 0.00 0.00 0.00 2.01
925 945 3.304458 CGCAGGGGAACAGTAAAGTTTTC 60.304 47.826 0.00 0.00 0.00 2.29
926 946 3.304458 GCAGGGGAACAGTAAAGTTTTCG 60.304 47.826 0.00 0.00 0.00 3.46
927 947 2.882761 AGGGGAACAGTAAAGTTTTCGC 59.117 45.455 0.00 0.00 0.00 4.70
964 985 6.616017 AGAAAAGCTTTTTATCAGTAGCAGC 58.384 36.000 24.58 7.92 36.11 5.25
965 986 5.964958 AAAGCTTTTTATCAGTAGCAGCA 57.035 34.783 5.69 0.00 36.11 4.41
966 987 5.557891 AAGCTTTTTATCAGTAGCAGCAG 57.442 39.130 0.00 0.00 36.11 4.24
1021 1042 0.580104 ATAAATTCGCAGCCGTACGC 59.420 50.000 10.49 5.63 35.54 4.42
1108 1135 2.048222 CCGCTGCTTCCGTGAAGA 60.048 61.111 15.23 3.13 41.71 2.87
1117 1152 0.894184 TTCCGTGAAGAGTCCTCGCT 60.894 55.000 1.05 0.00 34.09 4.93
1153 1194 2.442458 GTCCTCCTCCGGTCCTCC 60.442 72.222 0.00 0.00 0.00 4.30
1154 1195 2.617538 TCCTCCTCCGGTCCTCCT 60.618 66.667 0.00 0.00 0.00 3.69
1155 1196 2.123640 CCTCCTCCGGTCCTCCTC 60.124 72.222 0.00 0.00 0.00 3.71
1156 1197 2.123640 CTCCTCCGGTCCTCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
1157 1198 4.124943 TCCTCCGGTCCTCCTCCG 62.125 72.222 0.00 0.00 46.49 4.63
1162 1203 4.444081 CGGTCCTCCTCCGGTCCT 62.444 72.222 0.00 0.00 43.68 3.85
1163 1204 2.442458 GGTCCTCCTCCGGTCCTC 60.442 72.222 0.00 0.00 30.70 3.71
1174 1215 0.828343 CCGGTCCTCCACCTCTATCC 60.828 65.000 0.00 0.00 44.21 2.59
1178 1219 2.491271 GGTCCTCCACCTCTATCCCTAC 60.491 59.091 0.00 0.00 42.84 3.18
1179 1220 2.447811 GTCCTCCACCTCTATCCCTACT 59.552 54.545 0.00 0.00 0.00 2.57
1180 1221 2.717515 TCCTCCACCTCTATCCCTACTC 59.282 54.545 0.00 0.00 0.00 2.59
1182 1223 1.787676 TCCACCTCTATCCCTACTCCC 59.212 57.143 0.00 0.00 0.00 4.30
1183 1224 1.790157 CCACCTCTATCCCTACTCCCT 59.210 57.143 0.00 0.00 0.00 4.20
1184 1225 2.994581 CCACCTCTATCCCTACTCCCTA 59.005 54.545 0.00 0.00 0.00 3.53
1185 1226 3.010808 CCACCTCTATCCCTACTCCCTAG 59.989 56.522 0.00 0.00 0.00 3.02
1186 1227 2.650827 ACCTCTATCCCTACTCCCTAGC 59.349 54.545 0.00 0.00 0.00 3.42
1187 1228 2.024751 CCTCTATCCCTACTCCCTAGCC 60.025 59.091 0.00 0.00 0.00 3.93
1188 1229 2.650322 CTCTATCCCTACTCCCTAGCCA 59.350 54.545 0.00 0.00 0.00 4.75
1189 1230 2.650322 TCTATCCCTACTCCCTAGCCAG 59.350 54.545 0.00 0.00 0.00 4.85
1190 1231 1.246294 ATCCCTACTCCCTAGCCAGT 58.754 55.000 0.00 0.00 0.00 4.00
1191 1232 0.556747 TCCCTACTCCCTAGCCAGTC 59.443 60.000 0.00 0.00 0.00 3.51
1192 1233 0.470268 CCCTACTCCCTAGCCAGTCC 60.470 65.000 0.00 0.00 0.00 3.85
1193 1234 0.558712 CCTACTCCCTAGCCAGTCCT 59.441 60.000 0.00 0.00 0.00 3.85
1198 1239 2.586792 CCTAGCCAGTCCTGTGCC 59.413 66.667 4.74 0.00 0.00 5.01
1230 1271 3.128375 CAACCCGTGGCTTGCTTT 58.872 55.556 0.00 0.00 0.00 3.51
1232 1273 3.150647 AACCCGTGGCTTGCTTTGC 62.151 57.895 0.00 0.00 0.00 3.68
1233 1274 3.297620 CCCGTGGCTTGCTTTGCT 61.298 61.111 0.00 0.00 0.00 3.91
1234 1275 2.730094 CCGTGGCTTGCTTTGCTT 59.270 55.556 0.00 0.00 0.00 3.91
1242 1283 1.035139 CTTGCTTTGCTTGACAGGGT 58.965 50.000 0.00 0.00 0.00 4.34
1322 1375 3.458163 TTACTCCCTGCGCCTCCG 61.458 66.667 4.18 0.00 37.57 4.63
1354 1407 0.037160 GGTGGCGGGTTTAAGAAGGA 59.963 55.000 0.00 0.00 0.00 3.36
1355 1408 1.450025 GTGGCGGGTTTAAGAAGGAG 58.550 55.000 0.00 0.00 0.00 3.69
1356 1409 0.322187 TGGCGGGTTTAAGAAGGAGC 60.322 55.000 0.00 0.00 0.00 4.70
1361 1414 1.271926 GGGTTTAAGAAGGAGCAGGCA 60.272 52.381 0.00 0.00 0.00 4.75
1600 1656 3.874392 AGGTAATTGATTGTGCTTGGC 57.126 42.857 0.00 0.00 0.00 4.52
1634 1690 8.733458 TGAATTTACCTCATTCTCACTTCATTG 58.267 33.333 0.00 0.00 32.63 2.82
1635 1691 8.641498 AATTTACCTCATTCTCACTTCATTGT 57.359 30.769 0.00 0.00 0.00 2.71
1636 1692 7.439157 TTTACCTCATTCTCACTTCATTGTG 57.561 36.000 0.00 0.00 39.15 3.33
1638 1694 4.008330 CCTCATTCTCACTTCATTGTGCT 58.992 43.478 0.00 0.00 37.81 4.40
1639 1695 4.458295 CCTCATTCTCACTTCATTGTGCTT 59.542 41.667 0.00 0.00 37.81 3.91
1640 1696 5.366829 TCATTCTCACTTCATTGTGCTTG 57.633 39.130 0.00 0.00 37.81 4.01
1700 2376 3.138283 TCCAAACATTCAGTCCCAACTCT 59.862 43.478 0.00 0.00 31.71 3.24
1727 2447 4.973168 TGTAGAAACTTGAAGGCAGATGT 58.027 39.130 0.00 0.00 0.00 3.06
1734 2454 4.910195 ACTTGAAGGCAGATGTAACATCA 58.090 39.130 0.00 0.00 0.00 3.07
1810 2530 0.746204 TCGTTGTCTGTTTGCCTGCA 60.746 50.000 0.00 0.00 0.00 4.41
1832 2552 6.255020 TGCAGTATTAGCTAGCTTACGAAAAC 59.745 38.462 24.88 11.50 0.00 2.43
1840 2560 6.094061 AGCTAGCTTACGAAAACTAGTTCTG 58.906 40.000 12.68 4.46 34.96 3.02
1845 2565 5.464389 GCTTACGAAAACTAGTTCTGTGGAA 59.536 40.000 8.95 2.00 0.00 3.53
1916 2655 3.010250 GGAGGACACCCAAAGGACTATTT 59.990 47.826 0.00 0.00 36.73 1.40
1960 2699 2.687935 GGATTTGTCCGCACATAACCAT 59.312 45.455 0.00 0.00 29.88 3.55
1984 2723 1.299541 CATTATCCGCCACACCTCAC 58.700 55.000 0.00 0.00 0.00 3.51
2002 2741 1.049289 ACGTCCTAGGATTCCTGCCC 61.049 60.000 16.27 0.00 34.61 5.36
2128 2919 1.827681 TTTTGTTAGGCGGCATGCTA 58.172 45.000 18.92 0.00 45.43 3.49
2142 2933 3.436015 GGCATGCTAATCTGTGCTCATAG 59.564 47.826 18.92 0.00 37.70 2.23
2143 2934 3.436015 GCATGCTAATCTGTGCTCATAGG 59.564 47.826 11.37 0.00 34.85 2.57
2144 2935 3.117491 TGCTAATCTGTGCTCATAGGC 57.883 47.619 0.00 0.00 0.00 3.93
2145 2936 2.702478 TGCTAATCTGTGCTCATAGGCT 59.298 45.455 0.00 0.00 0.00 4.58
2146 2937 3.244009 TGCTAATCTGTGCTCATAGGCTC 60.244 47.826 0.00 0.00 0.00 4.70
2147 2938 3.244009 GCTAATCTGTGCTCATAGGCTCA 60.244 47.826 0.00 0.00 35.04 4.26
2148 2939 4.563168 GCTAATCTGTGCTCATAGGCTCAT 60.563 45.833 0.00 0.00 35.61 2.90
2149 2940 5.337089 GCTAATCTGTGCTCATAGGCTCATA 60.337 44.000 0.00 0.00 35.61 2.15
2150 2941 4.804868 ATCTGTGCTCATAGGCTCATAG 57.195 45.455 0.00 0.00 35.61 2.23
2176 2975 5.519808 ACCATAGGTAGTTCTGATCACTGA 58.480 41.667 0.00 0.00 32.11 3.41
2195 2994 4.783242 CTGAAAGTGTTGGTTGGTAATCG 58.217 43.478 0.00 0.00 0.00 3.34
2197 2996 3.495434 AAGTGTTGGTTGGTAATCGGA 57.505 42.857 0.00 0.00 0.00 4.55
2506 3311 4.792804 GGCCTCTGCTGGGTCTGC 62.793 72.222 0.00 0.00 37.74 4.26
2572 3377 7.166473 CGCAATTTCAGAATTTATAGGTTGCTC 59.834 37.037 0.00 0.00 36.88 4.26
2669 3637 2.883386 CAGAAGAAGCAGCCACTCTTTT 59.117 45.455 4.04 0.00 0.00 2.27
2726 3694 1.024271 GCAGTCCAAACAAGCTGTCA 58.976 50.000 0.00 0.00 0.00 3.58
2729 3697 2.945008 CAGTCCAAACAAGCTGTCAGAA 59.055 45.455 3.32 0.00 0.00 3.02
2781 3749 1.302033 AAGCTGAGCAGGACAACGG 60.302 57.895 7.39 0.00 0.00 4.44
2793 3761 1.009829 GACAACGGATCATGCAGACC 58.990 55.000 0.00 0.00 0.00 3.85
2871 3839 4.035102 GAAGCCTCGCCCCCAAGT 62.035 66.667 0.00 0.00 0.00 3.16
2876 3844 2.359975 CTCGCCCCCAAGTTGTCC 60.360 66.667 1.45 0.00 0.00 4.02
3105 4073 1.210234 ACCCTGATCATCGTCATTGCA 59.790 47.619 0.00 0.00 0.00 4.08
3142 4110 9.661187 CAAATTTTAATTTGTTGCAATGTAGCA 57.339 25.926 16.19 0.00 46.27 3.49
3279 4251 1.661617 GCGTGATGCATGTACGGTTTA 59.338 47.619 25.45 0.00 45.45 2.01
3282 4254 4.085884 CGTGATGCATGTACGGTTTAAAC 58.914 43.478 19.88 9.98 34.43 2.01
3284 4256 3.440872 TGATGCATGTACGGTTTAAACCC 59.559 43.478 27.75 16.40 46.53 4.11
3287 4259 2.483491 GCATGTACGGTTTAAACCCGAA 59.517 45.455 27.75 13.10 46.53 4.30
3292 4264 2.212652 ACGGTTTAAACCCGAACTGAC 58.787 47.619 27.75 3.94 46.53 3.51
3300 4279 0.253610 ACCCGAACTGACCAACACAA 59.746 50.000 0.00 0.00 0.00 3.33
3311 4290 3.766591 TGACCAACACAAGAACACCATTT 59.233 39.130 0.00 0.00 0.00 2.32
3317 4296 5.376854 ACACAAGAACACCATTTATCAGC 57.623 39.130 0.00 0.00 0.00 4.26
3597 4587 6.530019 AATTCCACATCAATCTTGTAACCC 57.470 37.500 0.00 0.00 0.00 4.11
3611 4601 5.642063 TCTTGTAACCCGATTGATGTTCTTC 59.358 40.000 0.00 0.00 0.00 2.87
3677 4668 7.016072 ACCTGAACATTTTGGATGTATGGAAAA 59.984 33.333 10.03 0.00 0.00 2.29
3804 4795 3.766691 GCTCCTCGCCACCGGTAA 61.767 66.667 6.87 0.00 34.56 2.85
3807 4798 1.001020 TCCTCGCCACCGGTAAGTA 60.001 57.895 6.87 0.00 34.56 2.24
3844 4835 1.177401 GATCCCCAACTGTTCTTGCC 58.823 55.000 0.00 0.00 0.00 4.52
3849 4840 1.576421 CAACTGTTCTTGCCGAGCC 59.424 57.895 0.00 0.00 0.00 4.70
3855 4846 1.004560 TTCTTGCCGAGCCTGACAG 60.005 57.895 0.00 0.00 0.00 3.51
3981 4972 2.202810 GCGCGAGGAGGAAGAAGG 60.203 66.667 12.10 0.00 0.00 3.46
4264 5255 1.006102 ATATACTGCCGTGCCGAGC 60.006 57.895 0.00 0.00 0.00 5.03
4313 5311 0.966179 TATGGTGTCGTGCTGTCACT 59.034 50.000 6.79 0.00 40.99 3.41
4486 5522 6.515035 CGAAAGCTAAATCAAACCCTGAACTT 60.515 38.462 0.00 0.00 37.67 2.66
4494 5530 6.605471 ATCAAACCCTGAACTTTTAATCCC 57.395 37.500 0.00 0.00 37.67 3.85
4507 5543 4.963276 TTTAATCCCTGAAATCAGCACG 57.037 40.909 4.87 0.00 42.47 5.34
4509 5545 0.254178 ATCCCTGAAATCAGCACGCT 59.746 50.000 4.87 0.00 42.47 5.07
4547 5583 5.404946 CGGTCTATTTTAAACCTCGAGTGA 58.595 41.667 12.31 0.00 0.00 3.41
4683 5726 6.772716 ACCAGGCAAACATAAATATACCAGAG 59.227 38.462 0.00 0.00 0.00 3.35
4707 5750 0.179059 TGAAGCGTTGTCTTGCCTCA 60.179 50.000 0.00 0.00 0.00 3.86
4812 5855 7.759489 ACCTGTTGTTGATAAATAAGAAGCA 57.241 32.000 0.00 0.00 0.00 3.91
4833 5876 7.617533 AGCACGAAAATATTTAACAACACAC 57.382 32.000 0.01 0.00 0.00 3.82
4834 5877 7.197017 AGCACGAAAATATTTAACAACACACA 58.803 30.769 0.01 0.00 0.00 3.72
4854 5897 5.235616 ACACAGAAGCGTCGAGATTTTAAAA 59.764 36.000 2.51 2.51 0.00 1.52
4966 6010 4.207019 CACATTTTGAAAACGTGAAGCCTC 59.793 41.667 10.98 0.00 31.01 4.70
5049 6094 9.535270 TTCGAAACATGAACAAAATTTGAAAAC 57.465 25.926 13.19 1.77 0.00 2.43
5050 6095 8.712363 TCGAAACATGAACAAAATTTGAAAACA 58.288 25.926 13.19 6.97 0.00 2.83
5193 6243 6.944557 AAAACTTCTTTTGGAAACTGTTCG 57.055 33.333 0.00 0.00 34.28 3.95
5199 6249 2.842208 TTGGAAACTGTTCGCACTTG 57.158 45.000 0.00 0.00 34.28 3.16
5208 6258 5.049398 ACTGTTCGCACTTGTTTTGTTTA 57.951 34.783 0.00 0.00 0.00 2.01
5270 6320 7.537991 TCGTGTTTATTTTCAAAAAGTGTTCGT 59.462 29.630 0.00 0.00 0.00 3.85
5271 6321 7.625309 CGTGTTTATTTTCAAAAAGTGTTCGTG 59.375 33.333 0.00 0.00 0.00 4.35
5273 6323 7.116376 TGTTTATTTTCAAAAAGTGTTCGTGCA 59.884 29.630 0.00 0.00 0.00 4.57
5326 6376 9.838975 ATGGTTTGTGTTTTCAAAATTTCTTTC 57.161 25.926 0.00 0.00 38.71 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.295909 GTGCTCTAGCTCACCTCCTATG 59.704 54.545 3.26 0.00 42.66 2.23
3 4 1.410365 GGTGCTCTAGCTCACCTCCTA 60.410 57.143 19.69 0.00 46.90 2.94
5 6 1.819905 GGTGCTCTAGCTCACCTCC 59.180 63.158 19.69 0.00 46.90 4.30
10 11 2.494059 GTTTTGTGGTGCTCTAGCTCA 58.506 47.619 3.26 0.00 42.66 4.26
11 12 1.807142 GGTTTTGTGGTGCTCTAGCTC 59.193 52.381 3.26 0.00 42.66 4.09
12 13 1.545651 GGGTTTTGTGGTGCTCTAGCT 60.546 52.381 3.26 0.00 42.66 3.32
13 14 0.881796 GGGTTTTGTGGTGCTCTAGC 59.118 55.000 0.00 0.00 42.50 3.42
14 15 2.039084 AGAGGGTTTTGTGGTGCTCTAG 59.961 50.000 0.00 0.00 0.00 2.43
15 16 2.038557 GAGAGGGTTTTGTGGTGCTCTA 59.961 50.000 0.00 0.00 0.00 2.43
16 17 0.846693 AGAGGGTTTTGTGGTGCTCT 59.153 50.000 0.00 0.00 0.00 4.09
17 18 1.239347 GAGAGGGTTTTGTGGTGCTC 58.761 55.000 0.00 0.00 0.00 4.26
18 19 0.178990 GGAGAGGGTTTTGTGGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
19 20 0.178990 AGGAGAGGGTTTTGTGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
20 21 1.878102 CGAGGAGAGGGTTTTGTGGTG 60.878 57.143 0.00 0.00 0.00 4.17
21 22 0.396811 CGAGGAGAGGGTTTTGTGGT 59.603 55.000 0.00 0.00 0.00 4.16
22 23 0.396811 ACGAGGAGAGGGTTTTGTGG 59.603 55.000 0.00 0.00 0.00 4.17
23 24 1.797025 GACGAGGAGAGGGTTTTGTG 58.203 55.000 0.00 0.00 0.00 3.33
24 25 0.317479 CGACGAGGAGAGGGTTTTGT 59.683 55.000 0.00 0.00 0.00 2.83
25 26 0.389948 CCGACGAGGAGAGGGTTTTG 60.390 60.000 0.00 0.00 45.00 2.44
26 27 1.972978 CCGACGAGGAGAGGGTTTT 59.027 57.895 0.00 0.00 45.00 2.43
27 28 2.647158 GCCGACGAGGAGAGGGTTT 61.647 63.158 0.00 0.00 45.00 3.27
28 29 3.069318 GCCGACGAGGAGAGGGTT 61.069 66.667 0.00 0.00 45.00 4.11
29 30 3.881019 TTGCCGACGAGGAGAGGGT 62.881 63.158 0.00 0.00 45.00 4.34
30 31 3.068691 TTGCCGACGAGGAGAGGG 61.069 66.667 0.00 0.00 45.00 4.30
31 32 1.595993 TTCTTGCCGACGAGGAGAGG 61.596 60.000 0.00 0.00 45.00 3.69
32 33 0.243907 TTTCTTGCCGACGAGGAGAG 59.756 55.000 0.00 3.03 45.00 3.20
33 34 0.677288 TTTTCTTGCCGACGAGGAGA 59.323 50.000 0.00 0.00 45.00 3.71
34 35 1.508632 TTTTTCTTGCCGACGAGGAG 58.491 50.000 0.00 0.00 45.00 3.69
35 36 3.690487 TTTTTCTTGCCGACGAGGA 57.310 47.368 0.00 0.00 45.00 3.71
50 51 4.823989 AGCACTTCATACTGCTCTGTTTTT 59.176 37.500 0.00 0.00 39.66 1.94
51 52 4.392940 AGCACTTCATACTGCTCTGTTTT 58.607 39.130 0.00 0.00 39.66 2.43
52 53 4.013267 AGCACTTCATACTGCTCTGTTT 57.987 40.909 0.00 0.00 39.66 2.83
53 54 3.692257 AGCACTTCATACTGCTCTGTT 57.308 42.857 0.00 0.00 39.66 3.16
58 59 2.021355 GCAGAGCACTTCATACTGCT 57.979 50.000 0.00 0.00 46.63 4.24
72 73 4.277593 CCTCGCCGGCTAGCAGAG 62.278 72.222 26.68 21.79 34.97 3.35
77 78 2.776370 TATACCCCCTCGCCGGCTAG 62.776 65.000 26.68 23.49 0.00 3.42
78 79 2.159101 ATATACCCCCTCGCCGGCTA 62.159 60.000 26.68 13.77 0.00 3.93
79 80 2.159101 TATATACCCCCTCGCCGGCT 62.159 60.000 26.68 6.03 0.00 5.52
80 81 1.047034 ATATATACCCCCTCGCCGGC 61.047 60.000 19.07 19.07 0.00 6.13
81 82 2.236766 CTATATATACCCCCTCGCCGG 58.763 57.143 0.00 0.00 0.00 6.13
82 83 2.236766 CCTATATATACCCCCTCGCCG 58.763 57.143 0.00 0.00 0.00 6.46
83 84 1.969208 GCCTATATATACCCCCTCGCC 59.031 57.143 0.00 0.00 0.00 5.54
84 85 2.364647 GTGCCTATATATACCCCCTCGC 59.635 54.545 0.00 0.00 0.00 5.03
85 86 3.638860 TGTGCCTATATATACCCCCTCG 58.361 50.000 0.00 0.00 0.00 4.63
86 87 5.216622 TGATGTGCCTATATATACCCCCTC 58.783 45.833 0.00 0.00 0.00 4.30
87 88 5.235003 TGATGTGCCTATATATACCCCCT 57.765 43.478 0.00 0.00 0.00 4.79
88 89 6.299141 CAATGATGTGCCTATATATACCCCC 58.701 44.000 0.00 0.00 0.00 5.40
89 90 6.126478 ACCAATGATGTGCCTATATATACCCC 60.126 42.308 0.00 0.00 0.00 4.95
90 91 6.900194 ACCAATGATGTGCCTATATATACCC 58.100 40.000 0.00 0.00 0.00 3.69
91 92 6.992715 GGACCAATGATGTGCCTATATATACC 59.007 42.308 0.00 0.00 0.00 2.73
92 93 6.992715 GGGACCAATGATGTGCCTATATATAC 59.007 42.308 0.00 0.00 40.70 1.47
93 94 6.183360 CGGGACCAATGATGTGCCTATATATA 60.183 42.308 0.00 0.00 41.62 0.86
94 95 5.396772 CGGGACCAATGATGTGCCTATATAT 60.397 44.000 0.00 0.00 41.62 0.86
95 96 4.081142 CGGGACCAATGATGTGCCTATATA 60.081 45.833 0.00 0.00 41.62 0.86
96 97 3.307691 CGGGACCAATGATGTGCCTATAT 60.308 47.826 0.00 0.00 41.62 0.86
97 98 2.038426 CGGGACCAATGATGTGCCTATA 59.962 50.000 0.00 0.00 41.62 1.31
98 99 1.202806 CGGGACCAATGATGTGCCTAT 60.203 52.381 0.00 0.00 41.62 2.57
99 100 0.180171 CGGGACCAATGATGTGCCTA 59.820 55.000 0.00 0.00 41.62 3.93
100 101 1.077501 CGGGACCAATGATGTGCCT 60.078 57.895 0.00 0.00 41.62 4.75
101 102 2.120909 CCGGGACCAATGATGTGCC 61.121 63.158 0.00 0.00 40.50 5.01
102 103 0.965363 AACCGGGACCAATGATGTGC 60.965 55.000 6.32 0.00 0.00 4.57
103 104 1.094785 GAACCGGGACCAATGATGTG 58.905 55.000 6.32 0.00 0.00 3.21
104 105 0.392461 CGAACCGGGACCAATGATGT 60.392 55.000 6.32 0.00 0.00 3.06
105 106 0.392461 ACGAACCGGGACCAATGATG 60.392 55.000 6.32 0.00 0.00 3.07
106 107 0.392461 CACGAACCGGGACCAATGAT 60.392 55.000 6.32 0.00 28.17 2.45
107 108 1.004320 CACGAACCGGGACCAATGA 60.004 57.895 6.32 0.00 28.17 2.57
108 109 2.038269 CCACGAACCGGGACCAATG 61.038 63.158 6.32 0.00 28.17 2.82
109 110 2.349755 CCACGAACCGGGACCAAT 59.650 61.111 6.32 0.00 28.17 3.16
110 111 4.629523 GCCACGAACCGGGACCAA 62.630 66.667 6.32 0.00 28.17 3.67
112 113 4.324991 AAGCCACGAACCGGGACC 62.325 66.667 6.32 0.00 28.17 4.46
113 114 2.999739 TTCAAGCCACGAACCGGGAC 63.000 60.000 6.32 0.00 28.17 4.46
114 115 2.809307 TTCAAGCCACGAACCGGGA 61.809 57.895 6.32 0.00 28.17 5.14
115 116 2.281208 TTCAAGCCACGAACCGGG 60.281 61.111 6.32 0.00 0.00 5.73
116 117 2.943653 GTTCAAGCCACGAACCGG 59.056 61.111 0.00 0.00 37.40 5.28
119 120 0.599204 TCTCGGTTCAAGCCACGAAC 60.599 55.000 0.00 2.67 41.66 3.95
120 121 0.599204 GTCTCGGTTCAAGCCACGAA 60.599 55.000 0.00 0.00 34.70 3.85
121 122 1.006571 GTCTCGGTTCAAGCCACGA 60.007 57.895 0.00 0.00 0.00 4.35
122 123 0.242825 TAGTCTCGGTTCAAGCCACG 59.757 55.000 0.00 0.00 0.00 4.94
123 124 2.450609 TTAGTCTCGGTTCAAGCCAC 57.549 50.000 0.00 0.00 0.00 5.01
124 125 2.289444 CCTTTAGTCTCGGTTCAAGCCA 60.289 50.000 0.00 0.00 0.00 4.75
125 126 2.028385 TCCTTTAGTCTCGGTTCAAGCC 60.028 50.000 0.00 0.00 0.00 4.35
126 127 2.994578 GTCCTTTAGTCTCGGTTCAAGC 59.005 50.000 0.00 0.00 0.00 4.01
127 128 3.988517 GTGTCCTTTAGTCTCGGTTCAAG 59.011 47.826 0.00 0.00 0.00 3.02
128 129 3.243975 GGTGTCCTTTAGTCTCGGTTCAA 60.244 47.826 0.00 0.00 0.00 2.69
129 130 2.298163 GGTGTCCTTTAGTCTCGGTTCA 59.702 50.000 0.00 0.00 0.00 3.18
130 131 2.353505 GGGTGTCCTTTAGTCTCGGTTC 60.354 54.545 0.00 0.00 0.00 3.62
131 132 1.622312 GGGTGTCCTTTAGTCTCGGTT 59.378 52.381 0.00 0.00 0.00 4.44
132 133 1.203149 AGGGTGTCCTTTAGTCTCGGT 60.203 52.381 0.00 0.00 41.56 4.69
133 134 1.558233 AGGGTGTCCTTTAGTCTCGG 58.442 55.000 0.00 0.00 41.56 4.63
149 150 0.893727 CTTGAACCGGGACCAAAGGG 60.894 60.000 6.32 0.00 41.29 3.95
150 151 1.524008 GCTTGAACCGGGACCAAAGG 61.524 60.000 6.32 0.00 0.00 3.11
151 152 1.524008 GGCTTGAACCGGGACCAAAG 61.524 60.000 6.32 3.29 0.00 2.77
152 153 1.529713 GGCTTGAACCGGGACCAAA 60.530 57.895 6.32 0.00 0.00 3.28
153 154 2.114411 GGCTTGAACCGGGACCAA 59.886 61.111 6.32 5.81 0.00 3.67
154 155 3.172106 TGGCTTGAACCGGGACCA 61.172 61.111 6.32 0.26 0.00 4.02
155 156 2.671963 GTGGCTTGAACCGGGACC 60.672 66.667 6.32 0.00 0.00 4.46
156 157 2.671963 GGTGGCTTGAACCGGGAC 60.672 66.667 6.32 0.00 0.00 4.46
157 158 2.758207 TTGGTGGCTTGAACCGGGA 61.758 57.895 6.32 0.00 40.86 5.14
158 159 2.203422 TTGGTGGCTTGAACCGGG 60.203 61.111 6.32 0.00 40.86 5.73
159 160 2.561037 GGTTGGTGGCTTGAACCGG 61.561 63.158 0.00 0.00 40.86 5.28
160 161 3.039134 GGTTGGTGGCTTGAACCG 58.961 61.111 0.00 0.00 40.86 4.44
161 162 2.561037 CCGGTTGGTGGCTTGAACC 61.561 63.158 0.00 0.00 38.26 3.62
162 163 2.561037 CCCGGTTGGTGGCTTGAAC 61.561 63.158 0.00 0.00 0.00 3.18
163 164 2.203422 CCCGGTTGGTGGCTTGAA 60.203 61.111 0.00 0.00 0.00 2.69
164 165 3.172106 TCCCGGTTGGTGGCTTGA 61.172 61.111 0.00 0.00 34.77 3.02
165 166 2.983592 GTCCCGGTTGGTGGCTTG 60.984 66.667 0.00 0.00 34.77 4.01
166 167 4.280019 GGTCCCGGTTGGTGGCTT 62.280 66.667 0.00 0.00 34.77 4.35
168 169 3.879180 ATTGGTCCCGGTTGGTGGC 62.879 63.158 0.00 0.00 34.77 5.01
169 170 1.976474 CATTGGTCCCGGTTGGTGG 60.976 63.158 0.00 0.00 34.77 4.61
170 171 0.323360 ATCATTGGTCCCGGTTGGTG 60.323 55.000 0.00 0.00 34.77 4.17
171 172 0.323360 CATCATTGGTCCCGGTTGGT 60.323 55.000 0.00 0.00 34.77 3.67
172 173 0.034574 TCATCATTGGTCCCGGTTGG 60.035 55.000 0.00 0.00 0.00 3.77
173 174 1.677576 CATCATCATTGGTCCCGGTTG 59.322 52.381 0.00 0.00 0.00 3.77
174 175 1.410083 CCATCATCATTGGTCCCGGTT 60.410 52.381 0.00 0.00 0.00 4.44
175 176 0.183492 CCATCATCATTGGTCCCGGT 59.817 55.000 0.00 0.00 0.00 5.28
176 177 0.538057 CCCATCATCATTGGTCCCGG 60.538 60.000 0.00 0.00 31.99 5.73
177 178 1.174712 GCCCATCATCATTGGTCCCG 61.175 60.000 0.00 0.00 31.99 5.14
178 179 0.829182 GGCCCATCATCATTGGTCCC 60.829 60.000 0.00 0.00 31.99 4.46
179 180 0.106066 TGGCCCATCATCATTGGTCC 60.106 55.000 0.00 0.00 31.99 4.46
180 181 1.325355 CTGGCCCATCATCATTGGTC 58.675 55.000 0.00 0.00 31.99 4.02
181 182 0.105862 CCTGGCCCATCATCATTGGT 60.106 55.000 0.00 0.00 31.99 3.67
182 183 0.186630 TCCTGGCCCATCATCATTGG 59.813 55.000 0.00 0.00 0.00 3.16
183 184 1.617322 CTCCTGGCCCATCATCATTG 58.383 55.000 0.00 0.00 0.00 2.82
184 185 0.178970 GCTCCTGGCCCATCATCATT 60.179 55.000 0.00 0.00 34.27 2.57
185 186 1.459369 GCTCCTGGCCCATCATCAT 59.541 57.895 0.00 0.00 34.27 2.45
186 187 2.921435 GCTCCTGGCCCATCATCA 59.079 61.111 0.00 0.00 34.27 3.07
187 188 2.281345 CGCTCCTGGCCCATCATC 60.281 66.667 0.00 0.00 37.74 2.92
188 189 2.769621 TCGCTCCTGGCCCATCAT 60.770 61.111 0.00 0.00 37.74 2.45
189 190 3.473647 CTCGCTCCTGGCCCATCA 61.474 66.667 0.00 0.00 37.74 3.07
190 191 4.247380 CCTCGCTCCTGGCCCATC 62.247 72.222 0.00 0.00 37.74 3.51
196 197 3.801997 AATGGGCCTCGCTCCTGG 61.802 66.667 4.53 0.00 0.00 4.45
197 198 2.335092 ATCAATGGGCCTCGCTCCTG 62.335 60.000 4.53 0.00 0.00 3.86
198 199 1.639635 AATCAATGGGCCTCGCTCCT 61.640 55.000 4.53 0.00 0.00 3.69
199 200 1.152881 AATCAATGGGCCTCGCTCC 60.153 57.895 4.53 0.00 0.00 4.70
200 201 1.169034 GGAATCAATGGGCCTCGCTC 61.169 60.000 4.53 0.00 0.00 5.03
201 202 1.152881 GGAATCAATGGGCCTCGCT 60.153 57.895 4.53 0.00 0.00 4.93
202 203 2.546494 CGGAATCAATGGGCCTCGC 61.546 63.158 4.53 0.00 0.00 5.03
203 204 1.893808 CCGGAATCAATGGGCCTCG 60.894 63.158 4.53 0.00 0.00 4.63
204 205 0.395724 AACCGGAATCAATGGGCCTC 60.396 55.000 9.46 0.00 0.00 4.70
205 206 0.395724 GAACCGGAATCAATGGGCCT 60.396 55.000 9.46 0.00 0.00 5.19
206 207 1.724582 CGAACCGGAATCAATGGGCC 61.725 60.000 9.46 0.00 0.00 5.80
207 208 1.029947 ACGAACCGGAATCAATGGGC 61.030 55.000 9.46 0.00 0.00 5.36
208 209 1.014352 GACGAACCGGAATCAATGGG 58.986 55.000 9.46 0.00 0.00 4.00
209 210 1.933853 GAGACGAACCGGAATCAATGG 59.066 52.381 9.46 0.00 0.00 3.16
210 211 2.348666 GTGAGACGAACCGGAATCAATG 59.651 50.000 9.46 0.00 0.00 2.82
211 212 2.618053 GTGAGACGAACCGGAATCAAT 58.382 47.619 9.46 0.00 0.00 2.57
212 213 1.337447 GGTGAGACGAACCGGAATCAA 60.337 52.381 9.46 0.00 0.00 2.57
213 214 0.245539 GGTGAGACGAACCGGAATCA 59.754 55.000 9.46 0.00 0.00 2.57
214 215 0.245539 TGGTGAGACGAACCGGAATC 59.754 55.000 9.46 5.02 40.86 2.52
215 216 0.682852 TTGGTGAGACGAACCGGAAT 59.317 50.000 9.46 0.00 40.86 3.01
216 217 0.249573 GTTGGTGAGACGAACCGGAA 60.250 55.000 9.46 0.00 40.86 4.30
217 218 1.364901 GTTGGTGAGACGAACCGGA 59.635 57.895 9.46 0.00 40.86 5.14
218 219 1.666872 GGTTGGTGAGACGAACCGG 60.667 63.158 0.00 0.00 44.79 5.28
219 220 3.946907 GGTTGGTGAGACGAACCG 58.053 61.111 5.08 0.00 44.79 4.44
221 222 1.666872 CCCGGTTGGTGAGACGAAC 60.667 63.158 0.00 0.00 36.30 3.95
222 223 1.833492 TCCCGGTTGGTGAGACGAA 60.833 57.895 0.00 0.00 34.77 3.85
223 224 2.203523 TCCCGGTTGGTGAGACGA 60.204 61.111 0.00 0.00 34.77 4.20
224 225 2.048503 GTCCCGGTTGGTGAGACG 60.049 66.667 0.00 0.00 34.77 4.18
225 226 2.047213 TTGGTCCCGGTTGGTGAGAC 62.047 60.000 0.00 0.00 34.77 3.36
226 227 1.346479 TTTGGTCCCGGTTGGTGAGA 61.346 55.000 0.00 0.00 34.77 3.27
227 228 0.466555 TTTTGGTCCCGGTTGGTGAG 60.467 55.000 0.00 0.00 34.77 3.51
228 229 0.466555 CTTTTGGTCCCGGTTGGTGA 60.467 55.000 0.00 0.00 34.77 4.02
229 230 1.460273 CCTTTTGGTCCCGGTTGGTG 61.460 60.000 0.00 0.00 34.77 4.17
230 231 1.152631 CCTTTTGGTCCCGGTTGGT 60.153 57.895 0.00 0.00 34.77 3.67
231 232 1.906333 CCCTTTTGGTCCCGGTTGG 60.906 63.158 0.00 0.00 38.10 3.77
232 233 2.570284 GCCCTTTTGGTCCCGGTTG 61.570 63.158 0.00 0.00 38.10 3.77
233 234 2.203582 GCCCTTTTGGTCCCGGTT 60.204 61.111 0.00 0.00 38.10 4.44
234 235 4.295199 GGCCCTTTTGGTCCCGGT 62.295 66.667 0.00 0.00 38.10 5.28
235 236 4.293671 TGGCCCTTTTGGTCCCGG 62.294 66.667 0.00 0.00 38.27 5.73
236 237 2.676471 CTGGCCCTTTTGGTCCCG 60.676 66.667 0.00 0.00 38.27 5.14
237 238 1.155155 TTCTGGCCCTTTTGGTCCC 59.845 57.895 0.00 0.00 38.27 4.46
238 239 1.185618 GGTTCTGGCCCTTTTGGTCC 61.186 60.000 0.00 0.00 38.27 4.46
239 240 1.524008 CGGTTCTGGCCCTTTTGGTC 61.524 60.000 0.00 0.00 40.11 4.02
240 241 1.530655 CGGTTCTGGCCCTTTTGGT 60.531 57.895 0.00 0.00 38.10 3.67
241 242 2.275380 CCGGTTCTGGCCCTTTTGG 61.275 63.158 0.00 0.00 39.97 3.28
242 243 2.275380 CCCGGTTCTGGCCCTTTTG 61.275 63.158 0.00 0.00 0.00 2.44
243 244 2.117423 CCCGGTTCTGGCCCTTTT 59.883 61.111 0.00 0.00 0.00 2.27
244 245 2.856988 TCCCGGTTCTGGCCCTTT 60.857 61.111 0.00 0.00 0.00 3.11
245 246 3.647771 GTCCCGGTTCTGGCCCTT 61.648 66.667 0.00 0.00 0.00 3.95
248 249 3.282374 ATTGGTCCCGGTTCTGGCC 62.282 63.158 0.00 0.00 0.00 5.36
249 250 2.046285 CATTGGTCCCGGTTCTGGC 61.046 63.158 0.00 0.00 0.00 4.85
250 251 2.046285 GCATTGGTCCCGGTTCTGG 61.046 63.158 0.00 0.00 0.00 3.86
251 252 2.046285 GGCATTGGTCCCGGTTCTG 61.046 63.158 0.00 0.00 0.00 3.02
252 253 2.355115 GGCATTGGTCCCGGTTCT 59.645 61.111 0.00 0.00 0.00 3.01
253 254 2.754254 GGGCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 33.43 3.62
259 260 3.995506 CTCGTGGGGGCATTGGTCC 62.996 68.421 0.00 0.00 38.40 4.46
260 261 2.438434 CTCGTGGGGGCATTGGTC 60.438 66.667 0.00 0.00 0.00 4.02
261 262 4.047125 CCTCGTGGGGGCATTGGT 62.047 66.667 0.00 0.00 0.00 3.67
288 289 4.410400 GTTCGTGAGGCCAGGGGG 62.410 72.222 5.01 0.00 37.18 5.40
289 290 4.410400 GGTTCGTGAGGCCAGGGG 62.410 72.222 5.01 0.00 0.00 4.79
290 291 4.760047 CGGTTCGTGAGGCCAGGG 62.760 72.222 5.01 0.00 0.00 4.45
291 292 4.760047 CCGGTTCGTGAGGCCAGG 62.760 72.222 5.01 0.00 0.00 4.45
292 293 4.760047 CCCGGTTCGTGAGGCCAG 62.760 72.222 5.01 0.00 0.00 4.85
294 295 4.754667 GTCCCGGTTCGTGAGGCC 62.755 72.222 0.00 0.00 0.00 5.19
295 296 4.754667 GGTCCCGGTTCGTGAGGC 62.755 72.222 0.00 0.00 0.00 4.70
296 297 2.180159 ATTGGTCCCGGTTCGTGAGG 62.180 60.000 0.00 0.00 0.00 3.86
297 298 1.019278 CATTGGTCCCGGTTCGTGAG 61.019 60.000 0.00 0.00 0.00 3.51
298 299 1.004320 CATTGGTCCCGGTTCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
299 300 2.686816 GCATTGGTCCCGGTTCGTG 61.687 63.158 0.00 0.00 0.00 4.35
300 301 2.359478 GCATTGGTCCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
301 302 3.131478 GGCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
302 303 2.754254 GGGCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 33.43 3.62
307 308 2.519013 GATTCATAGGGCATTGGTCCC 58.481 52.381 0.00 0.00 40.78 4.46
308 309 2.519013 GGATTCATAGGGCATTGGTCC 58.481 52.381 0.00 0.00 39.90 4.46
309 310 2.519013 GGGATTCATAGGGCATTGGTC 58.481 52.381 0.00 0.00 0.00 4.02
310 311 1.202927 CGGGATTCATAGGGCATTGGT 60.203 52.381 0.00 0.00 0.00 3.67
311 312 1.538047 CGGGATTCATAGGGCATTGG 58.462 55.000 0.00 0.00 0.00 3.16
312 313 1.202927 ACCGGGATTCATAGGGCATTG 60.203 52.381 6.32 0.00 0.00 2.82
313 314 1.149101 ACCGGGATTCATAGGGCATT 58.851 50.000 6.32 0.00 0.00 3.56
314 315 1.073923 GAACCGGGATTCATAGGGCAT 59.926 52.381 6.32 0.00 0.00 4.40
315 316 0.472471 GAACCGGGATTCATAGGGCA 59.528 55.000 6.32 0.00 0.00 5.36
316 317 0.602905 CGAACCGGGATTCATAGGGC 60.603 60.000 6.32 0.00 0.00 5.19
317 318 0.756903 ACGAACCGGGATTCATAGGG 59.243 55.000 6.32 0.00 0.00 3.53
318 319 3.069158 AGTTACGAACCGGGATTCATAGG 59.931 47.826 6.32 0.00 0.00 2.57
319 320 4.049186 CAGTTACGAACCGGGATTCATAG 58.951 47.826 6.32 0.00 0.00 2.23
320 321 3.700539 TCAGTTACGAACCGGGATTCATA 59.299 43.478 6.32 0.00 0.00 2.15
321 322 2.498481 TCAGTTACGAACCGGGATTCAT 59.502 45.455 6.32 0.00 0.00 2.57
322 323 1.894466 TCAGTTACGAACCGGGATTCA 59.106 47.619 6.32 0.00 0.00 2.57
323 324 2.660189 TCAGTTACGAACCGGGATTC 57.340 50.000 6.32 0.00 0.00 2.52
324 325 2.691927 GTTCAGTTACGAACCGGGATT 58.308 47.619 6.32 0.00 39.52 3.01
325 326 2.375173 GTTCAGTTACGAACCGGGAT 57.625 50.000 6.32 0.00 39.52 3.85
326 327 3.892200 GTTCAGTTACGAACCGGGA 57.108 52.632 6.32 0.00 39.52 5.14
331 332 1.000171 AGTCCCGGTTCAGTTACGAAC 60.000 52.381 0.00 10.10 43.75 3.95
332 333 1.331214 AGTCCCGGTTCAGTTACGAA 58.669 50.000 0.00 0.00 0.00 3.85
333 334 2.198827 TAGTCCCGGTTCAGTTACGA 57.801 50.000 0.00 0.00 0.00 3.43
334 335 3.184541 CATTAGTCCCGGTTCAGTTACG 58.815 50.000 0.00 0.00 0.00 3.18
335 336 3.528532 CCATTAGTCCCGGTTCAGTTAC 58.471 50.000 0.00 0.00 0.00 2.50
336 337 2.502538 CCCATTAGTCCCGGTTCAGTTA 59.497 50.000 0.00 0.00 0.00 2.24
337 338 1.280998 CCCATTAGTCCCGGTTCAGTT 59.719 52.381 0.00 0.00 0.00 3.16
338 339 0.909623 CCCATTAGTCCCGGTTCAGT 59.090 55.000 0.00 0.00 0.00 3.41
339 340 0.909623 ACCCATTAGTCCCGGTTCAG 59.090 55.000 0.00 0.00 0.00 3.02
340 341 1.364269 AACCCATTAGTCCCGGTTCA 58.636 50.000 0.00 0.00 33.22 3.18
341 342 2.502142 AAACCCATTAGTCCCGGTTC 57.498 50.000 0.00 0.00 37.62 3.62
342 343 3.784202 AGATAAACCCATTAGTCCCGGTT 59.216 43.478 0.00 0.00 40.32 4.44
343 344 3.135895 CAGATAAACCCATTAGTCCCGGT 59.864 47.826 0.00 0.00 0.00 5.28
344 345 3.496160 CCAGATAAACCCATTAGTCCCGG 60.496 52.174 0.00 0.00 0.00 5.73
345 346 3.740115 CCAGATAAACCCATTAGTCCCG 58.260 50.000 0.00 0.00 0.00 5.14
346 347 3.487372 GCCAGATAAACCCATTAGTCCC 58.513 50.000 0.00 0.00 0.00 4.46
347 348 3.138468 AGGCCAGATAAACCCATTAGTCC 59.862 47.826 5.01 0.00 0.00 3.85
348 349 4.137543 CAGGCCAGATAAACCCATTAGTC 58.862 47.826 5.01 0.00 0.00 2.59
349 350 3.785887 TCAGGCCAGATAAACCCATTAGT 59.214 43.478 5.01 0.00 0.00 2.24
350 351 4.437682 TCAGGCCAGATAAACCCATTAG 57.562 45.455 5.01 0.00 0.00 1.73
351 352 4.532834 GTTCAGGCCAGATAAACCCATTA 58.467 43.478 5.01 0.00 0.00 1.90
352 353 3.365472 GTTCAGGCCAGATAAACCCATT 58.635 45.455 5.01 0.00 0.00 3.16
353 354 2.683742 CGTTCAGGCCAGATAAACCCAT 60.684 50.000 5.01 0.00 0.00 4.00
354 355 1.339631 CGTTCAGGCCAGATAAACCCA 60.340 52.381 5.01 0.00 0.00 4.51
355 356 1.065709 TCGTTCAGGCCAGATAAACCC 60.066 52.381 5.01 0.00 0.00 4.11
356 357 2.396590 TCGTTCAGGCCAGATAAACC 57.603 50.000 5.01 0.00 0.00 3.27
357 358 4.201920 GGATTTCGTTCAGGCCAGATAAAC 60.202 45.833 5.01 0.00 0.00 2.01
358 359 3.945285 GGATTTCGTTCAGGCCAGATAAA 59.055 43.478 5.01 4.44 0.00 1.40
359 360 3.199946 AGGATTTCGTTCAGGCCAGATAA 59.800 43.478 5.01 0.00 0.00 1.75
360 361 2.771943 AGGATTTCGTTCAGGCCAGATA 59.228 45.455 5.01 0.00 0.00 1.98
361 362 1.561542 AGGATTTCGTTCAGGCCAGAT 59.438 47.619 5.01 0.00 0.00 2.90
362 363 0.984230 AGGATTTCGTTCAGGCCAGA 59.016 50.000 5.01 0.00 0.00 3.86
363 364 1.470098 CAAGGATTTCGTTCAGGCCAG 59.530 52.381 5.01 0.00 0.00 4.85
364 365 1.202879 ACAAGGATTTCGTTCAGGCCA 60.203 47.619 5.01 0.00 0.00 5.36
365 366 1.534729 ACAAGGATTTCGTTCAGGCC 58.465 50.000 0.00 0.00 0.00 5.19
366 367 3.643159 AAACAAGGATTTCGTTCAGGC 57.357 42.857 0.00 0.00 0.00 4.85
367 368 5.438761 AGAAAACAAGGATTTCGTTCAGG 57.561 39.130 0.00 0.00 40.78 3.86
368 369 7.190920 AGTAGAAAACAAGGATTTCGTTCAG 57.809 36.000 0.00 0.00 40.78 3.02
369 370 7.929785 ACTAGTAGAAAACAAGGATTTCGTTCA 59.070 33.333 3.59 0.00 40.78 3.18
370 371 8.221766 CACTAGTAGAAAACAAGGATTTCGTTC 58.778 37.037 3.59 0.00 40.78 3.95
371 372 7.713942 ACACTAGTAGAAAACAAGGATTTCGTT 59.286 33.333 3.59 0.00 40.78 3.85
372 373 7.170998 CACACTAGTAGAAAACAAGGATTTCGT 59.829 37.037 3.59 0.00 40.78 3.85
373 374 7.384115 TCACACTAGTAGAAAACAAGGATTTCG 59.616 37.037 3.59 0.00 40.78 3.46
374 375 8.603242 TCACACTAGTAGAAAACAAGGATTTC 57.397 34.615 3.59 0.00 37.11 2.17
376 377 9.654663 GTATCACACTAGTAGAAAACAAGGATT 57.345 33.333 3.59 0.00 0.00 3.01
377 378 8.258708 GGTATCACACTAGTAGAAAACAAGGAT 58.741 37.037 3.59 0.00 0.00 3.24
378 379 7.233962 TGGTATCACACTAGTAGAAAACAAGGA 59.766 37.037 3.59 0.00 0.00 3.36
379 380 7.383687 TGGTATCACACTAGTAGAAAACAAGG 58.616 38.462 3.59 0.00 0.00 3.61
380 381 8.873830 CATGGTATCACACTAGTAGAAAACAAG 58.126 37.037 3.59 0.00 0.00 3.16
381 382 7.333423 GCATGGTATCACACTAGTAGAAAACAA 59.667 37.037 3.59 0.00 0.00 2.83
382 383 6.816640 GCATGGTATCACACTAGTAGAAAACA 59.183 38.462 3.59 0.00 0.00 2.83
383 384 7.010552 CAGCATGGTATCACACTAGTAGAAAAC 59.989 40.741 3.59 0.64 0.00 2.43
384 385 7.041721 CAGCATGGTATCACACTAGTAGAAAA 58.958 38.462 3.59 0.00 0.00 2.29
385 386 6.379988 TCAGCATGGTATCACACTAGTAGAAA 59.620 38.462 3.59 0.00 36.16 2.52
386 387 5.891551 TCAGCATGGTATCACACTAGTAGAA 59.108 40.000 3.59 0.00 36.16 2.10
387 388 5.445964 TCAGCATGGTATCACACTAGTAGA 58.554 41.667 3.59 0.00 36.16 2.59
388 389 5.774498 TCAGCATGGTATCACACTAGTAG 57.226 43.478 0.00 0.00 36.16 2.57
389 390 6.323739 TCAATCAGCATGGTATCACACTAGTA 59.676 38.462 0.00 0.00 36.16 1.82
390 391 5.129320 TCAATCAGCATGGTATCACACTAGT 59.871 40.000 0.00 0.00 36.16 2.57
391 392 5.604565 TCAATCAGCATGGTATCACACTAG 58.395 41.667 0.00 0.00 36.16 2.57
392 393 5.129320 ACTCAATCAGCATGGTATCACACTA 59.871 40.000 0.00 0.00 36.16 2.74
393 394 4.080695 ACTCAATCAGCATGGTATCACACT 60.081 41.667 0.00 0.00 36.16 3.55
394 395 4.194640 ACTCAATCAGCATGGTATCACAC 58.805 43.478 0.00 0.00 36.16 3.82
395 396 4.492494 ACTCAATCAGCATGGTATCACA 57.508 40.909 0.00 0.00 36.16 3.58
396 397 4.450419 GCTACTCAATCAGCATGGTATCAC 59.550 45.833 0.00 0.00 37.73 3.06
427 428 4.305989 AGTTGCGCTCAAGAAATTTTGA 57.694 36.364 9.73 0.00 35.83 2.69
430 431 3.253188 TGCTAGTTGCGCTCAAGAAATTT 59.747 39.130 9.73 0.00 46.63 1.82
513 514 2.340210 TGTAGTGTGCAGGCAGAAAA 57.660 45.000 0.00 0.00 0.00 2.29
520 521 3.198068 GTGGATGTATGTAGTGTGCAGG 58.802 50.000 0.00 0.00 0.00 4.85
521 522 3.618594 GTGTGGATGTATGTAGTGTGCAG 59.381 47.826 0.00 0.00 0.00 4.41
529 530 6.605471 AAACAGAGAGTGTGGATGTATGTA 57.395 37.500 0.00 0.00 40.26 2.29
543 544 7.454260 AAGGGCTAAAATGTAAAACAGAGAG 57.546 36.000 0.00 0.00 0.00 3.20
552 562 8.995577 AGGTGTAGTATAAGGGCTAAAATGTAA 58.004 33.333 0.00 0.00 0.00 2.41
569 579 6.904463 TGAGTGTCATTGTTAGGTGTAGTA 57.096 37.500 0.00 0.00 0.00 1.82
570 580 5.801531 TGAGTGTCATTGTTAGGTGTAGT 57.198 39.130 0.00 0.00 0.00 2.73
571 581 6.223852 AGTTGAGTGTCATTGTTAGGTGTAG 58.776 40.000 0.00 0.00 0.00 2.74
572 582 6.041637 AGAGTTGAGTGTCATTGTTAGGTGTA 59.958 38.462 0.00 0.00 0.00 2.90
578 588 5.545063 TGGAGAGTTGAGTGTCATTGTTA 57.455 39.130 0.00 0.00 0.00 2.41
585 595 5.560966 TTTTTGTTGGAGAGTTGAGTGTC 57.439 39.130 0.00 0.00 0.00 3.67
586 596 5.163519 CCATTTTTGTTGGAGAGTTGAGTGT 60.164 40.000 0.00 0.00 36.26 3.55
595 605 2.621055 CCACGACCATTTTTGTTGGAGA 59.379 45.455 0.00 0.00 37.69 3.71
609 619 3.143728 AGAAAATTGTGTACCCACGACC 58.856 45.455 0.00 0.00 44.92 4.79
610 620 3.187842 GGAGAAAATTGTGTACCCACGAC 59.812 47.826 0.00 0.00 44.92 4.34
616 626 5.163519 CCCATCATGGAGAAAATTGTGTACC 60.164 44.000 4.75 0.00 40.96 3.34
617 627 5.652014 TCCCATCATGGAGAAAATTGTGTAC 59.348 40.000 4.75 0.00 40.96 2.90
619 629 4.676109 TCCCATCATGGAGAAAATTGTGT 58.324 39.130 4.75 0.00 40.96 3.72
622 632 7.350744 TGTATTCCCATCATGGAGAAAATTG 57.649 36.000 4.75 0.00 40.96 2.32
625 635 6.710295 CGTATGTATTCCCATCATGGAGAAAA 59.290 38.462 4.75 0.00 40.96 2.29
631 641 3.686241 CAGCGTATGTATTCCCATCATGG 59.314 47.826 0.00 0.00 37.25 3.66
632 642 4.568956 TCAGCGTATGTATTCCCATCATG 58.431 43.478 0.00 0.00 0.00 3.07
640 650 3.706698 TGTCAGCTCAGCGTATGTATTC 58.293 45.455 0.00 0.00 0.00 1.75
646 656 3.056628 GCTTGTCAGCTCAGCGTAT 57.943 52.632 0.00 0.00 43.51 3.06
647 657 4.578913 GCTTGTCAGCTCAGCGTA 57.421 55.556 0.00 0.00 43.51 4.42
666 676 7.920151 TCTTGTGTCCAAAATAAATTCACTGTG 59.080 33.333 0.17 0.17 0.00 3.66
667 677 8.006298 TCTTGTGTCCAAAATAAATTCACTGT 57.994 30.769 0.00 0.00 0.00 3.55
730 741 5.080068 CGTTGCGAAGAGATTTACCTTTTC 58.920 41.667 0.00 0.00 0.00 2.29
744 756 3.579147 TTCTACACAAACGTTGCGAAG 57.421 42.857 0.00 0.00 0.00 3.79
747 759 3.040990 TGTTTCTACACAAACGTTGCG 57.959 42.857 0.00 0.00 38.85 4.85
821 841 0.392461 GTATTGCCGTGCCAGAGGAA 60.392 55.000 0.00 0.00 0.00 3.36
825 845 2.817834 GCGTATTGCCGTGCCAGA 60.818 61.111 0.00 0.00 37.76 3.86
842 862 2.355126 ACTGTGCAGCTCGACGTG 60.355 61.111 0.00 0.00 0.00 4.49
890 910 1.298859 CCCTGCGAAAAGGAAGGACG 61.299 60.000 1.12 0.00 40.02 4.79
891 911 0.960861 CCCCTGCGAAAAGGAAGGAC 60.961 60.000 1.12 0.00 40.02 3.85
905 925 3.304458 GCGAAAACTTTACTGTTCCCCTG 60.304 47.826 0.00 0.00 0.00 4.45
910 930 3.363673 CCGAGGCGAAAACTTTACTGTTC 60.364 47.826 0.00 0.00 0.00 3.18
919 939 0.534203 TCTTTGCCGAGGCGAAAACT 60.534 50.000 16.71 0.00 43.11 2.66
925 945 0.591170 TTTCTTTCTTTGCCGAGGCG 59.409 50.000 9.78 0.00 45.51 5.52
926 946 2.666026 CTTTTCTTTCTTTGCCGAGGC 58.334 47.619 7.26 7.26 42.35 4.70
927 947 2.294512 AGCTTTTCTTTCTTTGCCGAGG 59.705 45.455 0.00 0.00 0.00 4.63
965 986 4.220821 TGATCCGTCTTCTTCAGCTTTACT 59.779 41.667 0.00 0.00 0.00 2.24
966 987 4.327627 GTGATCCGTCTTCTTCAGCTTTAC 59.672 45.833 0.00 0.00 0.00 2.01
1093 1114 1.016653 GGACTCTTCACGGAAGCAGC 61.017 60.000 8.32 0.00 39.29 5.25
1094 1115 0.605589 AGGACTCTTCACGGAAGCAG 59.394 55.000 8.32 8.94 39.29 4.24
1095 1116 0.603569 GAGGACTCTTCACGGAAGCA 59.396 55.000 8.32 0.00 39.29 3.91
1096 1117 0.456995 CGAGGACTCTTCACGGAAGC 60.457 60.000 8.32 0.00 39.29 3.86
1117 1152 2.106938 GAGGCGATCACATGCGGA 59.893 61.111 0.00 0.00 0.00 5.54
1157 1198 0.563672 AGGGATAGAGGTGGAGGACC 59.436 60.000 0.00 0.00 46.58 4.46
1158 1199 2.447811 AGTAGGGATAGAGGTGGAGGAC 59.552 54.545 0.00 0.00 0.00 3.85
1159 1200 2.717515 GAGTAGGGATAGAGGTGGAGGA 59.282 54.545 0.00 0.00 0.00 3.71
1160 1201 2.225167 GGAGTAGGGATAGAGGTGGAGG 60.225 59.091 0.00 0.00 0.00 4.30
1161 1202 2.225167 GGGAGTAGGGATAGAGGTGGAG 60.225 59.091 0.00 0.00 0.00 3.86
1162 1203 1.787676 GGGAGTAGGGATAGAGGTGGA 59.212 57.143 0.00 0.00 0.00 4.02
1163 1204 1.790157 AGGGAGTAGGGATAGAGGTGG 59.210 57.143 0.00 0.00 0.00 4.61
1174 1215 0.558712 AGGACTGGCTAGGGAGTAGG 59.441 60.000 0.85 0.00 0.00 3.18
1178 1219 1.965754 GCACAGGACTGGCTAGGGAG 61.966 65.000 0.85 0.00 34.19 4.30
1179 1220 1.990060 GCACAGGACTGGCTAGGGA 60.990 63.158 0.85 0.00 34.19 4.20
1180 1221 2.586792 GCACAGGACTGGCTAGGG 59.413 66.667 0.85 0.00 34.19 3.53
1182 1223 2.586792 GGGCACAGGACTGGCTAG 59.413 66.667 4.14 0.00 36.92 3.42
1183 1224 3.009115 GGGGCACAGGACTGGCTA 61.009 66.667 4.14 0.00 36.92 3.93
1186 1227 3.721706 GAGGGGGCACAGGACTGG 61.722 72.222 4.14 0.00 34.19 4.00
1187 1228 2.608988 AGAGGGGGCACAGGACTG 60.609 66.667 0.00 0.00 0.00 3.51
1188 1229 2.284995 GAGAGGGGGCACAGGACT 60.285 66.667 0.00 0.00 0.00 3.85
1189 1230 3.403558 GGAGAGGGGGCACAGGAC 61.404 72.222 0.00 0.00 0.00 3.85
1230 1271 2.655090 TTCAATCACCCTGTCAAGCA 57.345 45.000 0.00 0.00 0.00 3.91
1232 1273 2.756760 CCCATTCAATCACCCTGTCAAG 59.243 50.000 0.00 0.00 0.00 3.02
1233 1274 2.557229 CCCCATTCAATCACCCTGTCAA 60.557 50.000 0.00 0.00 0.00 3.18
1234 1275 1.005805 CCCCATTCAATCACCCTGTCA 59.994 52.381 0.00 0.00 0.00 3.58
1242 1283 1.451207 CGGCGACCCCATTCAATCA 60.451 57.895 0.00 0.00 0.00 2.57
1277 1324 2.568031 CGTGATGATGGCGTCGTCG 61.568 63.158 20.80 9.49 44.34 5.12
1278 1325 2.230940 CCGTGATGATGGCGTCGTC 61.231 63.158 19.76 19.76 42.20 4.20
1279 1326 2.202743 CCGTGATGATGGCGTCGT 60.203 61.111 0.00 0.00 32.54 4.34
1575 1631 2.497273 AGCACAATCAATTACCTTGGCC 59.503 45.455 0.00 0.00 35.43 5.36
1600 1656 9.605275 TGAGAATGAGGTAAATTCAGAAGTATG 57.395 33.333 0.00 0.00 36.65 2.39
1634 1690 6.701400 ACAGAAAACAATCAATTACCAAGCAC 59.299 34.615 0.00 0.00 0.00 4.40
1635 1691 6.815089 ACAGAAAACAATCAATTACCAAGCA 58.185 32.000 0.00 0.00 0.00 3.91
1636 1692 6.922957 TGACAGAAAACAATCAATTACCAAGC 59.077 34.615 0.00 0.00 0.00 4.01
1638 1694 7.206687 GGTGACAGAAAACAATCAATTACCAA 58.793 34.615 0.00 0.00 0.00 3.67
1639 1695 6.514212 CGGTGACAGAAAACAATCAATTACCA 60.514 38.462 0.00 0.00 0.00 3.25
1640 1696 5.856455 CGGTGACAGAAAACAATCAATTACC 59.144 40.000 0.00 0.00 0.00 2.85
1700 2376 4.776349 TGCCTTCAAGTTTCTACAGTTCA 58.224 39.130 0.00 0.00 0.00 3.18
1734 2454 2.433145 CTGTGATGCACGGCGAGT 60.433 61.111 16.62 0.00 37.14 4.18
1810 2530 8.901793 ACTAGTTTTCGTAAGCTAGCTAATACT 58.098 33.333 19.70 19.09 44.48 2.12
1832 2552 4.574013 GCATTCATCCTTCCACAGAACTAG 59.426 45.833 0.00 0.00 0.00 2.57
1840 2560 2.163010 CACACAGCATTCATCCTTCCAC 59.837 50.000 0.00 0.00 0.00 4.02
1845 2565 0.038599 TGCCACACAGCATTCATCCT 59.961 50.000 0.00 0.00 38.00 3.24
1916 2655 0.678395 ATTGTGGCGTGCAATTTGGA 59.322 45.000 0.00 0.00 33.24 3.53
1960 2699 1.694525 TGTGGCGGATAATGGGGGA 60.695 57.895 0.00 0.00 0.00 4.81
1984 2723 1.749033 GGGCAGGAATCCTAGGACG 59.251 63.158 15.42 1.56 29.64 4.79
2128 2919 4.563168 GCTATGAGCCTATGAGCACAGATT 60.563 45.833 0.00 0.00 36.78 2.40
2142 2933 2.938956 ACCTATGGTTGCTATGAGCC 57.061 50.000 0.00 0.00 41.51 4.70
2143 2934 4.608948 ACTACCTATGGTTGCTATGAGC 57.391 45.455 0.00 0.00 38.31 4.26
2144 2935 6.040955 TCAGAACTACCTATGGTTGCTATGAG 59.959 42.308 0.00 0.00 37.09 2.90
2145 2936 5.897250 TCAGAACTACCTATGGTTGCTATGA 59.103 40.000 0.00 0.00 37.09 2.15
2146 2937 6.161855 TCAGAACTACCTATGGTTGCTATG 57.838 41.667 0.00 0.00 37.09 2.23
2147 2938 6.554982 TGATCAGAACTACCTATGGTTGCTAT 59.445 38.462 0.00 0.00 37.09 2.97
2148 2939 5.897250 TGATCAGAACTACCTATGGTTGCTA 59.103 40.000 0.00 0.00 37.09 3.49
2149 2940 4.716784 TGATCAGAACTACCTATGGTTGCT 59.283 41.667 0.00 0.00 37.09 3.91
2150 2941 4.811557 GTGATCAGAACTACCTATGGTTGC 59.188 45.833 0.00 0.00 37.09 4.17
2176 2975 3.822940 TCCGATTACCAACCAACACTTT 58.177 40.909 0.00 0.00 0.00 2.66
2243 3042 4.141228 AGGTAGAATATCTCGTCCTCCACA 60.141 45.833 0.00 0.00 29.93 4.17
2506 3311 2.166459 TCATCTGTACCTTGCGAAGAGG 59.834 50.000 0.00 0.00 40.24 3.69
2669 3637 2.269023 TCTGGAGGCCTGAGATTTTCA 58.731 47.619 12.00 0.00 0.00 2.69
2781 3749 0.469070 AGCTCTGGGTCTGCATGATC 59.531 55.000 0.00 0.00 0.00 2.92
2871 3839 1.955663 TCGACGACGACGAGGACAA 60.956 57.895 17.84 0.00 43.81 3.18
2988 3956 1.401278 GGTGAACTCGACGAACCTCTC 60.401 57.143 8.82 2.68 0.00 3.20
2990 3958 0.388263 GGGTGAACTCGACGAACCTC 60.388 60.000 14.39 5.27 0.00 3.85
3279 4251 1.340211 TGTGTTGGTCAGTTCGGGTTT 60.340 47.619 0.00 0.00 0.00 3.27
3282 4254 0.944386 CTTGTGTTGGTCAGTTCGGG 59.056 55.000 0.00 0.00 0.00 5.14
3284 4256 2.675844 TGTTCTTGTGTTGGTCAGTTCG 59.324 45.455 0.00 0.00 0.00 3.95
3287 4259 2.290641 TGGTGTTCTTGTGTTGGTCAGT 60.291 45.455 0.00 0.00 0.00 3.41
3292 4264 6.083098 TGATAAATGGTGTTCTTGTGTTGG 57.917 37.500 0.00 0.00 0.00 3.77
3300 4279 7.338800 CCAATTAGCTGATAAATGGTGTTCT 57.661 36.000 10.82 0.00 38.95 3.01
3357 4344 9.492973 AAAATTCACAGTTAATTTCTTCATGGG 57.507 29.630 6.01 0.00 35.91 4.00
3361 4348 7.984050 TGGCAAAATTCACAGTTAATTTCTTCA 59.016 29.630 6.01 3.26 35.91 3.02
3476 4466 3.322466 AGCACCCTTCCTCCCACG 61.322 66.667 0.00 0.00 0.00 4.94
3538 4528 0.698238 TACCTGCTTGTTGCCCTCAT 59.302 50.000 0.00 0.00 42.00 2.90
3542 4532 2.194201 TAGTTACCTGCTTGTTGCCC 57.806 50.000 0.00 0.00 42.00 5.36
3560 4550 5.880164 TGTGGAATTCGGTGGATAGATTA 57.120 39.130 0.00 0.00 0.00 1.75
3571 4561 4.970662 ACAAGATTGATGTGGAATTCGG 57.029 40.909 0.00 0.00 0.00 4.30
3677 4668 1.600058 TCATCCCCTTCTCAGCCAAT 58.400 50.000 0.00 0.00 0.00 3.16
3800 4791 4.654015 GATCGATCGAGCTGATACTTACC 58.346 47.826 25.17 0.00 37.47 2.85
3825 4816 1.177401 GGCAAGAACAGTTGGGGATC 58.823 55.000 0.00 0.00 0.00 3.36
3828 4819 1.228124 TCGGCAAGAACAGTTGGGG 60.228 57.895 0.00 0.00 0.00 4.96
3829 4820 1.856265 GCTCGGCAAGAACAGTTGGG 61.856 60.000 0.00 0.00 0.00 4.12
3849 4840 1.331138 GTACGTCCTCGATCCTGTCAG 59.669 57.143 0.00 0.00 40.62 3.51
3855 4846 1.012841 ACTTCGTACGTCCTCGATCC 58.987 55.000 16.05 0.00 40.62 3.36
3862 4853 0.731855 GACCTGCACTTCGTACGTCC 60.732 60.000 16.05 1.20 0.00 4.79
4025 5016 3.292159 TGCCAGTGCAGCAGCTTG 61.292 61.111 1.76 0.96 44.23 4.01
4264 5255 6.095021 TGCAGCCTAATCCGTACTACTATATG 59.905 42.308 0.00 0.00 0.00 1.78
4313 5311 1.927268 GCAGCAACACGTACGTACTCA 60.927 52.381 22.34 0.00 0.00 3.41
4486 5522 3.128589 GCGTGCTGATTTCAGGGATTAAA 59.871 43.478 9.49 0.00 43.94 1.52
4507 5543 1.689273 ACCGGGATCAGATAGTTCAGC 59.311 52.381 6.32 0.00 0.00 4.26
4509 5545 3.314307 AGACCGGGATCAGATAGTTCA 57.686 47.619 6.32 0.00 0.00 3.18
4512 5548 7.850935 TTAAAATAGACCGGGATCAGATAGT 57.149 36.000 6.32 0.00 0.00 2.12
4519 5555 4.748600 CGAGGTTTAAAATAGACCGGGATC 59.251 45.833 6.32 0.00 38.48 3.36
4547 5583 1.981256 ACGATCCTTGTTTGGCAACT 58.019 45.000 0.00 0.00 33.58 3.16
4657 5700 7.122715 TCTGGTATATTTATGTTTGCCTGGTT 58.877 34.615 0.00 0.00 0.00 3.67
4674 5717 4.137116 ACGCTTCAATTGCTCTGGTATA 57.863 40.909 0.00 0.00 0.00 1.47
4683 5726 1.453148 GCAAGACAACGCTTCAATTGC 59.547 47.619 0.00 0.00 35.35 3.56
4728 5771 4.319177 AGAGGTTCGAAGTTCAATTCCTG 58.681 43.478 0.00 0.00 0.00 3.86
4729 5772 4.570930 GAGAGGTTCGAAGTTCAATTCCT 58.429 43.478 0.00 0.00 0.00 3.36
4812 5855 9.445786 CTTCTGTGTGTTGTTAAATATTTTCGT 57.554 29.630 5.91 0.00 0.00 3.85
4833 5876 5.675970 TGTTTTAAAATCTCGACGCTTCTG 58.324 37.500 3.52 0.00 0.00 3.02
4834 5877 5.917541 TGTTTTAAAATCTCGACGCTTCT 57.082 34.783 3.52 0.00 0.00 2.85
4930 5974 5.769967 TCAAAATGTGTTTGTGTTTTCCG 57.230 34.783 0.00 0.00 0.00 4.30
4966 6010 6.919721 TCAAAATCGTAGGGGATTTCAAAAG 58.080 36.000 1.47 0.00 43.81 2.27
5177 6227 3.420839 AGTGCGAACAGTTTCCAAAAG 57.579 42.857 0.00 0.00 0.00 2.27
5193 6243 6.713792 TTGAAACCTAAACAAAACAAGTGC 57.286 33.333 0.00 0.00 0.00 4.40
5208 6258 9.447157 TGAAAACAAGAATGATTTTTGAAACCT 57.553 25.926 14.39 0.00 32.38 3.50
5220 6270 9.752274 CGAACAAAATTTTGAAAACAAGAATGA 57.248 25.926 32.20 0.00 40.55 2.57
5221 6271 9.540431 ACGAACAAAATTTTGAAAACAAGAATG 57.460 25.926 32.20 6.98 40.55 2.67
5256 6306 7.329717 AGTTTTTAATGCACGAACACTTTTTGA 59.670 29.630 0.00 0.00 0.00 2.69
5270 6320 3.223435 TCCCCGAACAGTTTTTAATGCA 58.777 40.909 0.00 0.00 0.00 3.96
5271 6321 3.926821 TCCCCGAACAGTTTTTAATGC 57.073 42.857 0.00 0.00 0.00 3.56
5273 6323 9.833917 TTTTAAAATCCCCGAACAGTTTTTAAT 57.166 25.926 0.00 0.00 32.05 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.