AutoCloner

Multiple sequence alignment - TraesCS3B01G087100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G087100	chr3B	100.000	2894	0	0	1	2894	55372757	55369864	0.000000e+00	5345.0
1	TraesCS3B01G087100	chr3B	87.170	1138	94	20	873	1993	55394337	55393235	0.000000e+00	1245.0
2	TraesCS3B01G087100	chr3B	93.548	124	8	0	2604	2727	55392988	55392865	4.920000e-43	185.0
3	TraesCS3B01G087100	chr3A	90.082	2077	124	29	1	2053	45172334	45170316	0.000000e+00	2619.0
4	TraesCS3B01G087100	chr3A	86.760	287	24	5	1691	1974	45192513	45192238	1.010000e-79	307.0
5	TraesCS3B01G087100	chr3D	93.791	1079	61	5	783	1856	32743799	32742722	0.000000e+00	1616.0
6	TraesCS3B01G087100	chr3D	87.955	797	42	12	1935	2679	32742721	32741927	0.000000e+00	891.0
7	TraesCS3B01G087100	chr3D	97.351	151	4	0	2744	2894	32741927	32741777	1.030000e-64	257.0
8	TraesCS3B01G087100	chr5A	86.683	413	46	9	271	675	342046538	342046127	1.580000e-122	449.0
9	TraesCS3B01G087100	chr5A	83.732	418	53	14	265	674	340476208	340475798	5.850000e-102	381.0
10	TraesCS3B01G087100	chr2B	86.386	404	45	9	267	666	750033766	750033369	1.590000e-117	433.0
11	TraesCS3B01G087100	chr5D	85.330	409	48	10	271	672	338382321	338381918	2.080000e-111	412.0
12	TraesCS3B01G087100	chr5D	80.247	162	22	7	23	184	433119430	433119279	2.360000e-21	113.0
13	TraesCS3B01G087100	chr2A	84.412	417	52	13	265	674	109325458	109325868	5.810000e-107	398.0
14	TraesCS3B01G087100	chr7A	83.981	412	50	12	265	670	725157462	725157863	5.850000e-102	381.0
15	TraesCS3B01G087100	chr7A	81.928	166	21	8	21	181	39240064	39240225	6.510000e-27	132.0
16	TraesCS3B01G087100	chr5B	83.831	402	59	6	265	663	488858902	488859300	7.570000e-101	377.0
17	TraesCS3B01G087100	chr5B	78.846	156	27	5	18	170	707065329	707065481	1.830000e-17	100.0
18	TraesCS3B01G087100	chr1B	83.413	416	53	10	265	675	328153585	328153181	3.520000e-99	372.0
19	TraesCS3B01G087100	chr7D	83.444	151	21	4	20	169	504489646	504489793	1.400000e-28	137.0
20	TraesCS3B01G087100	chr7D	81.871	171	20	7	20	183	80707714	80707880	1.810000e-27	134.0
21	TraesCS3B01G087100	chr7D	79.082	196	26	11	34	224	29716416	29716601	1.410000e-23	121.0
22	TraesCS3B01G087100	chr7D	85.263	95	8	4	19	113	557383675	557383763	3.070000e-15	93.5
23	TraesCS3B01G087100	chr4B	79.878	164	30	3	23	184	637981974	637981812	1.820000e-22	117.0
24	TraesCS3B01G087100	chr4D	78.488	172	25	7	8	176	465749192	465749030	5.100000e-18	102.0
25	TraesCS3B01G087100	chr4D	78.488	172	25	7	8	176	465750177	465750015	5.100000e-18	102.0
26	TraesCS3B01G087100	chr6B	95.918	49	2	0	1093	1141	8997156	8997204	2.390000e-11	80.5
27	TraesCS3B01G087100	chr6A	91.525	59	3	2	1093	1150	3855964	3855907	2.390000e-11	80.5
28	TraesCS3B01G087100	chr6D	93.878	49	3	0	1093	1141	4779144	4779096	1.110000e-09	75.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G087100	chr3B	55369864	55372757	2893	True	5345.000000	5345	100.000000	1	2894	1	chr3B.!!$R1	2893
1	TraesCS3B01G087100	chr3B	55392865	55394337	1472	True	715.000000	1245	90.359000	873	2727	2	chr3B.!!$R2	1854
2	TraesCS3B01G087100	chr3A	45170316	45172334	2018	True	2619.000000	2619	90.082000	1	2053	1	chr3A.!!$R1	2052
3	TraesCS3B01G087100	chr3D	32741777	32743799	2022	True	921.333333	1616	93.032333	783	2894	3	chr3D.!!$R1	2111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
559	565	1.001378	CTTGGACCTTTTGAGGTTGCG	60.001	52.381	0.0	0.0	43.24	4.85	F
1410	1431	0.109272	CGCTGCCATCGGTATCGTAT	60.109	55.000	0.0	0.0	37.69	3.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1547	1571	0.040425	GACGTTTGACATGGGTGTGC	60.040	55.0	0.0	0.0	39.09	4.57	R
2320	2404	0.101219	GAAGATGCCCGAACCAATGC	59.899	55.0	0.0	0.0	0.00	3.56	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
153	154	2.311688	AATTCGGAGGTAGCGCCCAG	62.312	60.000	2.29	0.00	38.26	4.45
220	223	3.031660	GCGCTCGCTAACTAGTTGT	57.968	52.632	18.56	0.00	38.26	3.32
225	228	3.426426	CGCTCGCTAACTAGTTGTTCTCT	60.426	47.826	18.56	0.00	39.89	3.10
242	245	5.477291	TGTTCTCTTCCTTGAGTAGTTCGAT	59.523	40.000	0.00	0.00	35.68	3.59
244	247	6.928979	TCTCTTCCTTGAGTAGTTCGATAG	57.071	41.667	0.00	0.00	35.68	2.08
317	320	8.442632	TCATGAGATCAGACACCAAAATTATC	57.557	34.615	0.00	0.00	0.00	1.75
381	386	8.762426	CAACATTCATGTGAGATATGTCTACAG	58.238	37.037	1.10	0.65	41.61	2.74
457	463	9.599866	AGTCAAATTCGAATGTGAATAGTATCA	57.400	29.630	28.36	4.73	37.59	2.15
546	552	5.966742	AAGTTGAATTAGAAGCTTGGACC	57.033	39.130	2.10	0.00	0.00	4.46
559	565	1.001378	CTTGGACCTTTTGAGGTTGCG	60.001	52.381	0.00	0.00	43.24	4.85
560	566	1.285950	GGACCTTTTGAGGTTGCGC	59.714	57.895	0.00	0.00	43.24	6.09
573	579	4.032703	AGGTTGCGCATCAAATATTGAC	57.967	40.909	12.75	1.14	43.48	3.18
675	682	3.588842	AGATCTCACACAAATCTTCCCCA	59.411	43.478	0.00	0.00	0.00	4.96
677	684	3.754965	TCTCACACAAATCTTCCCCAAG	58.245	45.455	0.00	0.00	0.00	3.61
746	753	4.695791	GGGGGAGAGGGGTTGGGT	62.696	72.222	0.00	0.00	0.00	4.51
760	767	4.887190	GGGTGTGCGGGTGGTGTT	62.887	66.667	0.00	0.00	0.00	3.32
763	770	4.885270	TGTGCGGGTGGTGTTGGG	62.885	66.667	0.00	0.00	0.00	4.12
1074	1086	0.896940	CACCCACCATGAAGCTGCTT	60.897	55.000	15.92	15.92	0.00	3.91
1410	1431	0.109272	CGCTGCCATCGGTATCGTAT	60.109	55.000	0.00	0.00	37.69	3.06
1435	1456	1.883084	CAATACCCGGCTGTCGCTC	60.883	63.158	0.00	0.00	37.59	5.03
1547	1571	0.108615	GTCATGGACGACCTCACCAG	60.109	60.000	5.33	0.00	37.12	4.00
1611	1635	1.205893	CTCAACGGAGAAGAGAAGGGG	59.794	57.143	0.00	0.00	44.26	4.79
1632	1656	2.032377	GCTCATACTCGAGGAGAAGTCG	60.032	54.545	18.41	1.17	38.28	4.18
1678	1702	2.532973	CGTGACGTCGATGCTCAATTTC	60.533	50.000	11.62	0.00	0.00	2.17
1737	1770	3.825014	CCTTGCAGGGATTGGATATTCTG	59.175	47.826	9.80	0.00	0.00	3.02
1844	1877	4.501714	TCGTACATCCGGTGGCGC	62.502	66.667	0.00	0.00	32.77	6.53
1929	1965	1.202710	TGTCGTGTATGTTGGTTGCCT	60.203	47.619	0.00	0.00	0.00	4.75
1939	1975	4.821589	GGTTGCCTCCGCTCCTCG	62.822	72.222	0.00	0.00	35.36	4.63
1989	2039	4.152223	TGCATCTCAAAGTTCATGTGTACG	59.848	41.667	0.00	0.00	0.00	3.67
2000	2050	3.407698	TCATGTGTACGCCAAACAAGAT	58.592	40.909	3.51	0.00	0.00	2.40
2171	2254	3.807553	AGGAGCACAAAATTTTTGGTGG	58.192	40.909	22.27	13.75	41.39	4.61
2178	2261	5.335191	GCACAAAATTTTTGGTGGTGTTTGA	60.335	36.000	22.27	0.00	41.39	2.69
2193	2276	1.734465	GTTTGACCATTCGAGGAGCTG	59.266	52.381	0.00	0.00	0.00	4.24
2231	2314	3.140325	TCAGGTCCCAACAATGTTCTC	57.860	47.619	0.00	0.00	0.00	2.87
2240	2324	5.598005	TCCCAACAATGTTCTCTTTCAATGT	59.402	36.000	0.00	0.00	30.35	2.71
2309	2393	3.566322	TCCAAACACCATGGACTTTTACG	59.434	43.478	21.47	7.80	41.98	3.18
2331	2415	2.023181	CATCGCGCATTGGTTCGG	59.977	61.111	8.75	0.00	0.00	4.30
2340	2424	0.740737	CATTGGTTCGGGCATCTTCC	59.259	55.000	0.00	0.00	0.00	3.46
2345	2429	1.819208	TTCGGGCATCTTCCATGCG	60.819	57.895	0.65	0.00	45.41	4.73
2351	2435	2.159057	GGGCATCTTCCATGCGAAAAAT	60.159	45.455	0.65	0.00	45.41	1.82
2430	2514	2.586079	ATCCGAATCGCCGCACTG	60.586	61.111	0.00	0.00	0.00	3.66
2439	2523	0.739462	TCGCCGCACTGGTTAAGATG	60.739	55.000	0.00	0.00	41.21	2.90
2441	2525	1.305219	GCCGCACTGGTTAAGATGCA	61.305	55.000	0.00	0.00	41.21	3.96
2447	2531	4.808895	CGCACTGGTTAAGATGCATAACTA	59.191	41.667	0.00	0.00	34.50	2.24
2490	2574	3.955471	TGGAAAGGAACAGGAGCTAATG	58.045	45.455	0.00	0.00	0.00	1.90
2497	2581	4.018050	AGGAACAGGAGCTAATGTCCAAAT	60.018	41.667	15.39	0.00	36.43	2.32
2510	2594	6.645790	AATGTCCAAATCTCATCCAATAGC	57.354	37.500	0.00	0.00	0.00	2.97
2513	2597	4.759183	GTCCAAATCTCATCCAATAGCCTC	59.241	45.833	0.00	0.00	0.00	4.70
2549	2639	3.594134	CACACTTCTGAATCCCTCTGAC	58.406	50.000	0.00	0.00	32.21	3.51
2555	2645	1.330655	TGAATCCCTCTGACCTCGCC	61.331	60.000	0.00	0.00	0.00	5.54
2609	2700	1.542915	GGTAACACCTGTCGCTCACTA	59.457	52.381	0.00	0.00	34.73	2.74
2714	2805	1.032114	GCTCCATGTAACACCTGCCC	61.032	60.000	0.00	0.00	0.00	5.36
2716	2807	1.002624	CCATGTAACACCTGCCCGT	60.003	57.895	0.00	0.00	0.00	5.28
2727	2818	1.418637	ACCTGCCCGTCACTCTTTTTA	59.581	47.619	0.00	0.00	0.00	1.52
2728	2819	2.158726	ACCTGCCCGTCACTCTTTTTAA	60.159	45.455	0.00	0.00	0.00	1.52
2729	2820	3.081804	CCTGCCCGTCACTCTTTTTAAT	58.918	45.455	0.00	0.00	0.00	1.40
2730	2821	3.127030	CCTGCCCGTCACTCTTTTTAATC	59.873	47.826	0.00	0.00	0.00	1.75
2731	2822	4.003648	CTGCCCGTCACTCTTTTTAATCT	58.996	43.478	0.00	0.00	0.00	2.40
2732	2823	5.155278	TGCCCGTCACTCTTTTTAATCTA	57.845	39.130	0.00	0.00	0.00	1.98
2733	2824	5.553123	TGCCCGTCACTCTTTTTAATCTAA	58.447	37.500	0.00	0.00	0.00	2.10
2734	2825	6.177610	TGCCCGTCACTCTTTTTAATCTAAT	58.822	36.000	0.00	0.00	0.00	1.73
2735	2826	7.332557	TGCCCGTCACTCTTTTTAATCTAATA	58.667	34.615	0.00	0.00	0.00	0.98
2736	2827	7.990886	TGCCCGTCACTCTTTTTAATCTAATAT	59.009	33.333	0.00	0.00	0.00	1.28
2737	2828	8.837389	GCCCGTCACTCTTTTTAATCTAATATT	58.163	33.333	0.00	0.00	0.00	1.28
2802	2893	5.115622	GCTATCTTTCGTGTTCAAACAAAGC	59.884	40.000	0.00	0.00	41.21	3.51
2811	2902	4.554973	GTGTTCAAACAAAGCGATATCTGC	59.445	41.667	10.37	10.37	41.21	4.26
2878	2969	2.996621	CTGAGGAATCGGTGTTCAAGAC	59.003	50.000	0.00	0.00	0.00	3.01
2885	2976	5.432885	AATCGGTGTTCAAGACGAATTTT	57.567	34.783	0.00	0.00	38.94	1.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	4.712337	TCCTTAGCTTTTGGACCAAAAACA	59.288	37.500	27.93	15.72	41.77	2.83
23	24	5.270893	TCCTTAGCTTTTGGACCAAAAAC	57.729	39.130	27.93	24.30	41.77	2.43
104	105	3.204170	TTTTTCGCGCGCGTTTTC	58.796	50.000	46.54	13.68	40.74	2.29
130	131	0.248094	GCGCTACCTCCGAATTTTGC	60.248	55.000	0.00	0.00	0.00	3.68
139	140	4.228567	GCTCTGGGCGCTACCTCC	62.229	72.222	7.64	0.00	39.10	4.30
220	223	7.110810	TCTATCGAACTACTCAAGGAAGAGAA	58.889	38.462	0.00	0.00	38.98	2.87
225	228	7.663827	TGTTTTCTATCGAACTACTCAAGGAA	58.336	34.615	0.00	0.00	0.00	3.36
249	252	5.981315	TCTCGTACAACCTAACAAGTCTTTG	59.019	40.000	0.00	0.00	40.24	2.77
257	260	5.008331	AGTGAGATCTCGTACAACCTAACA	58.992	41.667	17.76	0.00	0.00	2.41
261	264	3.958018	AGAGTGAGATCTCGTACAACCT	58.042	45.455	17.76	7.38	39.21	3.50
457	463	7.822822	GTGTCAAAGTACTATTCACCCATAACT	59.177	37.037	0.00	0.00	0.00	2.24
546	552	2.420628	TTGATGCGCAACCTCAAAAG	57.579	45.000	19.64	0.00	0.00	2.27
675	682	3.277416	AACCTCCCTCTCCAACTACTT	57.723	47.619	0.00	0.00	0.00	2.24
677	684	5.695424	AATTAACCTCCCTCTCCAACTAC	57.305	43.478	0.00	0.00	0.00	2.73
725	732	4.040198	AACCCCTCTCCCCCTCCC	62.040	72.222	0.00	0.00	0.00	4.30
746	753	4.885270	CCCAACACCACCCGCACA	62.885	66.667	0.00	0.00	0.00	4.57
763	770	4.779486	ATCTCCCCCACCCCACCC	62.779	72.222	0.00	0.00	0.00	4.61
779	786	5.454062	TCCCAATCCGGTCAATCATTAAAT	58.546	37.500	0.00	0.00	0.00	1.40
1074	1086	1.226859	CTTGGCCTTCGCGTCGATA	60.227	57.895	5.77	0.00	35.23	2.92
1244	1256	0.737367	GCTGCTCTGCATGTACACGA	60.737	55.000	0.00	0.00	38.13	4.35
1247	1259	2.102438	GCGCTGCTCTGCATGTACA	61.102	57.895	0.00	0.00	38.13	2.90
1390	1411	2.742710	TACGATACCGATGGCAGCGC	62.743	60.000	21.25	0.00	39.50	5.92
1404	1425	1.897802	GGGTATTGGGGTCGATACGAT	59.102	52.381	0.00	0.00	39.86	3.73
1410	1431	3.472726	GCCGGGTATTGGGGTCGA	61.473	66.667	2.18	0.00	0.00	4.20
1451	1472	3.923864	AGCCGCGTGGAACTGTCA	61.924	61.111	21.76	0.00	37.49	3.58
1527	1551	0.830023	TGGTGAGGTCGTCCATGACA	60.830	55.000	0.51	0.00	40.72	3.58
1547	1571	0.040425	GACGTTTGACATGGGTGTGC	60.040	55.000	0.00	0.00	39.09	4.57
1611	1635	2.032377	CGACTTCTCCTCGAGTATGAGC	60.032	54.545	12.31	0.00	34.56	4.26
1632	1656	2.996621	CTCTTGTTGACCGATCTTGACC	59.003	50.000	0.00	0.00	0.00	4.02
1737	1770	1.139853	CTGGACTGTAGGGAAGCCATC	59.860	57.143	0.00	0.00	0.00	3.51
1844	1877	6.973843	TCATTTTTCTCCTCAACACTCATTG	58.026	36.000	0.00	0.00	0.00	2.82
1897	1933	7.494625	CCAACATACACGACATCCTACTTAATT	59.505	37.037	0.00	0.00	0.00	1.40
1898	1934	6.984474	CCAACATACACGACATCCTACTTAAT	59.016	38.462	0.00	0.00	0.00	1.40
1899	1935	6.071221	ACCAACATACACGACATCCTACTTAA	60.071	38.462	0.00	0.00	0.00	1.85
1900	1936	5.419788	ACCAACATACACGACATCCTACTTA	59.580	40.000	0.00	0.00	0.00	2.24
1901	1937	4.222145	ACCAACATACACGACATCCTACTT	59.778	41.667	0.00	0.00	0.00	2.24
1902	1938	3.767673	ACCAACATACACGACATCCTACT	59.232	43.478	0.00	0.00	0.00	2.57
1909	1945	1.202710	AGGCAACCAACATACACGACA	60.203	47.619	0.00	0.00	37.17	4.35
1913	1949	0.802494	CGGAGGCAACCAACATACAC	59.198	55.000	2.06	0.00	37.17	2.90
1929	1965	0.966920	AAGAAACTTCGAGGAGCGGA	59.033	50.000	0.00	0.00	41.33	5.54
1939	1975	5.108517	TGTTTGCATGTGGAAAGAAACTTC	58.891	37.500	0.00	0.00	36.05	3.01
1989	2039	4.434713	AACGATTGGTATCTTGTTTGGC	57.565	40.909	0.00	0.00	0.00	4.52
2041	2091	6.595716	AGGGCTTCGATGCAAATTACTATATC	59.404	38.462	22.93	2.81	34.04	1.63
2046	2096	2.684881	CAGGGCTTCGATGCAAATTACT	59.315	45.455	22.93	9.11	34.04	2.24
2047	2097	2.223572	CCAGGGCTTCGATGCAAATTAC	60.224	50.000	22.93	6.10	34.04	1.89
2048	2098	2.023673	CCAGGGCTTCGATGCAAATTA	58.976	47.619	22.93	0.00	34.04	1.40
2062	2129	2.827642	GTGCAGATGAGCCAGGGC	60.828	66.667	0.97	0.97	42.33	5.19
2135	2218	0.322277	CTCCTTGCACACCTGAGCAT	60.322	55.000	0.00	0.00	41.03	3.79
2157	2240	5.635866	GGTCAAACACCACCAAAAATTTTG	58.364	37.500	11.24	11.24	45.98	2.44
2171	2254	1.464997	GCTCCTCGAATGGTCAAACAC	59.535	52.381	0.00	0.00	0.00	3.32
2178	2261	1.115467	CCTACAGCTCCTCGAATGGT	58.885	55.000	0.00	0.00	0.00	3.55
2193	2276	8.464404	GGGACCTGATTTTATTTGTTTACCTAC	58.536	37.037	0.00	0.00	0.00	3.18
2275	2359	3.181459	TGGTGTTTGGACATTCGAGAAGA	60.181	43.478	0.00	0.00	38.23	2.87
2320	2404	0.101219	GAAGATGCCCGAACCAATGC	59.899	55.000	0.00	0.00	0.00	3.56
2326	2410	1.729881	GCATGGAAGATGCCCGAAC	59.270	57.895	0.00	0.00	39.01	3.95
2331	2415	2.652941	TTTTTCGCATGGAAGATGCC	57.347	45.000	0.00	0.00	41.71	4.40
2383	2467	8.240682	CCTGGACGTGAACAATAAATTCAAATA	58.759	33.333	0.00	0.00	37.80	1.40
2459	2543	7.040823	GCTCCTGTTCCTTTCCATAGATAATTG	60.041	40.741	0.00	0.00	0.00	2.32
2479	2563	4.774124	TGAGATTTGGACATTAGCTCCTG	58.226	43.478	0.00	0.00	0.00	3.86
2490	2574	4.723309	AGGCTATTGGATGAGATTTGGAC	58.277	43.478	0.00	0.00	0.00	4.02
2555	2645	0.454957	CGGTTGAATTGGAAGCGCAG	60.455	55.000	11.47	0.00	37.48	5.18
2561	2651	0.539438	AGCAGGCGGTTGAATTGGAA	60.539	50.000	0.00	0.00	0.00	3.53
2609	2700	5.009811	ACAACTACTACTCGAACTTGCTCTT	59.990	40.000	0.00	0.00	0.00	2.85
2736	2827	9.391006	GTTATCTAACCCATGTCACTATTTGAA	57.609	33.333	0.00	0.00	35.39	2.69
2737	2828	8.544622	TGTTATCTAACCCATGTCACTATTTGA	58.455	33.333	0.00	0.00	35.37	2.69
2738	2829	8.612619	GTGTTATCTAACCCATGTCACTATTTG	58.387	37.037	0.00	0.00	35.37	2.32
2739	2830	7.494625	CGTGTTATCTAACCCATGTCACTATTT	59.505	37.037	0.00	0.00	35.37	1.40
2740	2831	6.984474	CGTGTTATCTAACCCATGTCACTATT	59.016	38.462	0.00	0.00	35.37	1.73
2741	2832	6.097839	ACGTGTTATCTAACCCATGTCACTAT	59.902	38.462	0.00	0.00	35.37	2.12
2742	2833	5.419788	ACGTGTTATCTAACCCATGTCACTA	59.580	40.000	0.00	0.00	35.37	2.74
2743	2834	4.222145	ACGTGTTATCTAACCCATGTCACT	59.778	41.667	0.00	0.00	35.37	3.41
2802	2893	4.504461	GGCATTACTTATCGGCAGATATCG	59.496	45.833	7.41	5.03	38.95	2.92
2811	2902	6.877611	ACCAAATAAGGCATTACTTATCGG	57.122	37.500	0.00	0.00	41.50	4.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.