Multiple sequence alignment - TraesCS3B01G086800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G086800 chr3B 100.000 2549 0 0 1 2549 55115398 55117946 0.000000e+00 4708
1 TraesCS3B01G086800 chr3B 98.357 1035 15 1 568 1602 812516877 812515845 0.000000e+00 1816
2 TraesCS3B01G086800 chr3B 98.922 464 4 1 2086 2549 661408826 661409288 0.000000e+00 828
3 TraesCS3B01G086800 chr4A 98.359 1036 15 1 567 1602 36562909 36563942 0.000000e+00 1818
4 TraesCS3B01G086800 chr4A 98.491 464 7 0 2086 2549 36563940 36564403 0.000000e+00 819
5 TraesCS3B01G086800 chr1B 98.177 1042 17 1 561 1602 42162348 42161309 0.000000e+00 1818
6 TraesCS3B01G086800 chr1B 96.907 485 15 0 1602 2086 139318839 139318355 0.000000e+00 813
7 TraesCS3B01G086800 chr1B 89.574 470 39 2 1610 2079 669871198 669870739 2.830000e-164 588
8 TraesCS3B01G086800 chr1B 91.667 108 5 3 467 571 546500818 546500712 2.040000e-31 147
9 TraesCS3B01G086800 chr3A 98.177 1042 15 3 563 1602 65962247 65961208 0.000000e+00 1816
10 TraesCS3B01G086800 chr3A 98.263 1036 18 0 567 1602 722406051 722405016 0.000000e+00 1814
11 TraesCS3B01G086800 chr3A 93.139 481 20 8 1 475 45082376 45082849 0.000000e+00 693
12 TraesCS3B01G086800 chr6A 98.354 1033 15 1 570 1602 616131295 616132325 0.000000e+00 1812
13 TraesCS3B01G086800 chr6A 98.707 464 6 0 2086 2549 617221842 617221379 0.000000e+00 824
14 TraesCS3B01G086800 chr2B 98.263 1036 16 1 567 1602 776222958 776223991 0.000000e+00 1812
15 TraesCS3B01G086800 chr2B 98.707 464 5 1 2086 2549 781095268 781095730 0.000000e+00 822
16 TraesCS3B01G086800 chr2B 90.283 494 37 3 1597 2090 594840712 594841194 9.950000e-179 636
17 TraesCS3B01G086800 chr2B 95.000 100 5 0 472 571 138550075 138550174 9.440000e-35 158
18 TraesCS3B01G086800 chr7B 97.985 1042 18 2 561 1602 552932152 552931114 0.000000e+00 1805
19 TraesCS3B01G086800 chr7B 98.915 461 4 1 2089 2549 485425145 485424686 0.000000e+00 822
20 TraesCS3B01G086800 chr7A 98.256 1032 16 1 571 1602 618102487 618101458 0.000000e+00 1805
21 TraesCS3B01G086800 chr7A 90.734 518 35 4 1600 2115 709149677 709149171 0.000000e+00 678
22 TraesCS3B01G086800 chr7A 90.612 490 34 3 1602 2090 215885230 215885708 7.690000e-180 640
23 TraesCS3B01G086800 chr7A 88.753 409 36 6 55 457 612998746 612998342 2.280000e-135 492
24 TraesCS3B01G086800 chr6B 97.732 485 11 0 1602 2086 288042651 288043135 0.000000e+00 835
25 TraesCS3B01G086800 chr2A 98.491 464 7 0 2086 2549 493266856 493267319 0.000000e+00 819
26 TraesCS3B01G086800 chr2A 98.491 464 7 0 2086 2549 613867485 613867948 0.000000e+00 819
27 TraesCS3B01G086800 chr2A 87.073 410 43 6 55 457 461165307 461165713 2.990000e-124 455
28 TraesCS3B01G086800 chr4B 98.491 464 6 1 2086 2549 26119950 26120412 0.000000e+00 817
29 TraesCS3B01G086800 chr1A 98.491 464 6 1 2086 2549 22792556 22793018 0.000000e+00 817
30 TraesCS3B01G086800 chr1A 92.653 490 36 0 1599 2088 74124916 74125405 0.000000e+00 706
31 TraesCS3B01G086800 chr6D 89.876 484 38 2 1603 2086 62328517 62328045 1.680000e-171 612
32 TraesCS3B01G086800 chr6D 93.939 99 5 1 474 571 75281959 75281861 5.680000e-32 148
33 TraesCS3B01G086800 chr3D 89.051 411 29 10 55 456 339869498 339869901 1.760000e-136 496
34 TraesCS3B01G086800 chr3D 86.429 420 40 6 1667 2084 39615162 39615566 6.470000e-121 444
35 TraesCS3B01G086800 chr2D 89.109 404 30 6 58 457 79071078 79070685 8.200000e-135 490
36 TraesCS3B01G086800 chr2D 93.939 99 6 0 473 571 19380928 19381026 1.580000e-32 150
37 TraesCS3B01G086800 chr5A 87.990 408 34 12 55 457 493818804 493818407 3.840000e-128 468
38 TraesCS3B01G086800 chr5D 87.745 408 32 7 55 456 490946867 490946472 6.430000e-126 460
39 TraesCS3B01G086800 chr5D 84.416 385 49 11 79 457 481422041 481421662 4.010000e-98 368
40 TraesCS3B01G086800 chr5D 92.929 99 5 2 474 571 254524739 254524642 2.640000e-30 143
41 TraesCS3B01G086800 chr5B 89.583 336 29 5 123 458 694305037 694305366 3.030000e-114 422
42 TraesCS3B01G086800 chrUn 95.050 101 4 1 472 571 95766942 95766842 9.440000e-35 158
43 TraesCS3B01G086800 chrUn 94.898 98 5 0 474 571 96036146 96036243 1.220000e-33 154
44 TraesCS3B01G086800 chr4D 94.949 99 5 0 473 571 375142650 375142748 3.400000e-34 156
45 TraesCS3B01G086800 chr7D 93.069 101 6 1 471 571 264303320 264303419 2.040000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G086800 chr3B 55115398 55117946 2548 False 4708.0 4708 100.000 1 2549 1 chr3B.!!$F1 2548
1 TraesCS3B01G086800 chr3B 812515845 812516877 1032 True 1816.0 1816 98.357 568 1602 1 chr3B.!!$R1 1034
2 TraesCS3B01G086800 chr4A 36562909 36564403 1494 False 1318.5 1818 98.425 567 2549 2 chr4A.!!$F1 1982
3 TraesCS3B01G086800 chr1B 42161309 42162348 1039 True 1818.0 1818 98.177 561 1602 1 chr1B.!!$R1 1041
4 TraesCS3B01G086800 chr3A 65961208 65962247 1039 True 1816.0 1816 98.177 563 1602 1 chr3A.!!$R1 1039
5 TraesCS3B01G086800 chr3A 722405016 722406051 1035 True 1814.0 1814 98.263 567 1602 1 chr3A.!!$R2 1035
6 TraesCS3B01G086800 chr6A 616131295 616132325 1030 False 1812.0 1812 98.354 570 1602 1 chr6A.!!$F1 1032
7 TraesCS3B01G086800 chr2B 776222958 776223991 1033 False 1812.0 1812 98.263 567 1602 1 chr2B.!!$F3 1035
8 TraesCS3B01G086800 chr7B 552931114 552932152 1038 True 1805.0 1805 97.985 561 1602 1 chr7B.!!$R2 1041
9 TraesCS3B01G086800 chr7A 618101458 618102487 1029 True 1805.0 1805 98.256 571 1602 1 chr7A.!!$R2 1031
10 TraesCS3B01G086800 chr7A 709149171 709149677 506 True 678.0 678 90.734 1600 2115 1 chr7A.!!$R3 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 451 0.101939 GAGCTTGGCCTTTGCTATGC 59.898 55.0 15.51 3.42 45.64 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1660 1664 0.593773 GCTAGAAGCGAGGAGAAGCG 60.594 60.0 0.0 0.0 38.61 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.909376 GCATTCTGCACTGCAATCTG 58.091 50.000 4.99 3.91 44.26 2.90
39 40 1.471287 GCATTCTGCACTGCAATCTGA 59.529 47.619 4.99 0.00 44.26 3.27
40 41 2.099263 GCATTCTGCACTGCAATCTGAT 59.901 45.455 4.99 0.00 44.26 2.90
41 42 3.314357 GCATTCTGCACTGCAATCTGATA 59.686 43.478 4.99 0.00 44.26 2.15
42 43 4.201980 GCATTCTGCACTGCAATCTGATAA 60.202 41.667 4.99 0.00 44.26 1.75
43 44 5.507482 GCATTCTGCACTGCAATCTGATAAT 60.507 40.000 4.99 0.00 44.26 1.28
44 45 6.293790 GCATTCTGCACTGCAATCTGATAATA 60.294 38.462 4.99 0.00 44.26 0.98
45 46 7.575155 GCATTCTGCACTGCAATCTGATAATAT 60.575 37.037 4.99 0.00 44.26 1.28
46 47 8.943002 CATTCTGCACTGCAATCTGATAATATA 58.057 33.333 4.99 0.00 38.41 0.86
47 48 7.895975 TCTGCACTGCAATCTGATAATATAC 57.104 36.000 4.99 0.00 38.41 1.47
48 49 6.875726 TCTGCACTGCAATCTGATAATATACC 59.124 38.462 4.99 0.00 38.41 2.73
49 50 5.939883 TGCACTGCAATCTGATAATATACCC 59.060 40.000 0.00 0.00 34.76 3.69
50 51 5.063944 GCACTGCAATCTGATAATATACCCG 59.936 44.000 0.00 0.00 0.00 5.28
51 52 6.398095 CACTGCAATCTGATAATATACCCGA 58.602 40.000 0.00 0.00 0.00 5.14
52 53 6.873605 CACTGCAATCTGATAATATACCCGAA 59.126 38.462 0.00 0.00 0.00 4.30
53 54 6.874134 ACTGCAATCTGATAATATACCCGAAC 59.126 38.462 0.00 0.00 0.00 3.95
54 55 5.867174 TGCAATCTGATAATATACCCGAACG 59.133 40.000 0.00 0.00 0.00 3.95
55 56 6.097356 GCAATCTGATAATATACCCGAACGA 58.903 40.000 0.00 0.00 0.00 3.85
56 57 6.253727 GCAATCTGATAATATACCCGAACGAG 59.746 42.308 0.00 0.00 0.00 4.18
57 58 5.892160 TCTGATAATATACCCGAACGAGG 57.108 43.478 0.00 0.00 0.00 4.63
58 59 4.157289 TCTGATAATATACCCGAACGAGGC 59.843 45.833 0.00 0.00 0.00 4.70
59 60 2.995466 TAATATACCCGAACGAGGCG 57.005 50.000 0.00 0.00 0.00 5.52
60 61 1.035139 AATATACCCGAACGAGGCGT 58.965 50.000 0.00 0.00 43.97 5.68
61 62 0.595095 ATATACCCGAACGAGGCGTC 59.405 55.000 0.00 0.00 39.99 5.19
89 90 2.467962 GGGCTCCAGCTCGTTTTAC 58.532 57.895 0.00 0.00 41.70 2.01
90 91 1.025113 GGGCTCCAGCTCGTTTTACC 61.025 60.000 0.00 0.00 41.70 2.85
91 92 0.321298 GGCTCCAGCTCGTTTTACCA 60.321 55.000 0.00 0.00 41.70 3.25
92 93 1.519408 GCTCCAGCTCGTTTTACCAA 58.481 50.000 0.00 0.00 38.21 3.67
93 94 1.877443 GCTCCAGCTCGTTTTACCAAA 59.123 47.619 0.00 0.00 38.21 3.28
94 95 2.095718 GCTCCAGCTCGTTTTACCAAAG 60.096 50.000 0.00 0.00 38.21 2.77
95 96 3.399330 CTCCAGCTCGTTTTACCAAAGA 58.601 45.455 0.00 0.00 0.00 2.52
96 97 3.811083 TCCAGCTCGTTTTACCAAAGAA 58.189 40.909 0.00 0.00 0.00 2.52
97 98 4.200874 TCCAGCTCGTTTTACCAAAGAAA 58.799 39.130 0.00 0.00 0.00 2.52
98 99 4.641094 TCCAGCTCGTTTTACCAAAGAAAA 59.359 37.500 0.00 0.00 0.00 2.29
99 100 5.125739 TCCAGCTCGTTTTACCAAAGAAAAA 59.874 36.000 0.00 0.00 0.00 1.94
100 101 5.983118 CCAGCTCGTTTTACCAAAGAAAAAT 59.017 36.000 0.00 0.00 0.00 1.82
101 102 6.143919 CCAGCTCGTTTTACCAAAGAAAAATC 59.856 38.462 0.00 0.00 0.00 2.17
102 103 6.695278 CAGCTCGTTTTACCAAAGAAAAATCA 59.305 34.615 0.00 0.00 0.00 2.57
103 104 6.918022 AGCTCGTTTTACCAAAGAAAAATCAG 59.082 34.615 0.00 0.00 0.00 2.90
104 105 6.915843 GCTCGTTTTACCAAAGAAAAATCAGA 59.084 34.615 0.00 0.00 0.00 3.27
105 106 7.434013 GCTCGTTTTACCAAAGAAAAATCAGAA 59.566 33.333 0.00 0.00 0.00 3.02
106 107 9.463443 CTCGTTTTACCAAAGAAAAATCAGAAT 57.537 29.630 0.00 0.00 0.00 2.40
107 108 9.243637 TCGTTTTACCAAAGAAAAATCAGAATG 57.756 29.630 0.00 0.00 37.54 2.67
108 109 9.030301 CGTTTTACCAAAGAAAAATCAGAATGT 57.970 29.630 0.00 0.00 37.40 2.71
168 169 7.899178 ACAAATACATATGACTGTTCGACAA 57.101 32.000 10.38 0.00 0.00 3.18
169 170 7.963981 ACAAATACATATGACTGTTCGACAAG 58.036 34.615 10.38 0.00 0.00 3.16
170 171 7.602644 ACAAATACATATGACTGTTCGACAAGT 59.397 33.333 10.38 0.00 0.00 3.16
171 172 9.083080 CAAATACATATGACTGTTCGACAAGTA 57.917 33.333 10.38 0.00 0.00 2.24
172 173 9.817809 AAATACATATGACTGTTCGACAAGTAT 57.182 29.630 10.38 0.00 0.00 2.12
173 174 8.803201 ATACATATGACTGTTCGACAAGTATG 57.197 34.615 10.38 3.59 0.00 2.39
174 175 6.631016 ACATATGACTGTTCGACAAGTATGT 58.369 36.000 10.38 7.35 44.25 2.29
175 176 7.768240 ACATATGACTGTTCGACAAGTATGTA 58.232 34.615 10.38 2.00 40.74 2.29
176 177 8.248253 ACATATGACTGTTCGACAAGTATGTAA 58.752 33.333 10.38 0.00 40.74 2.41
177 178 9.083080 CATATGACTGTTCGACAAGTATGTAAA 57.917 33.333 0.00 0.00 40.74 2.01
178 179 7.956420 ATGACTGTTCGACAAGTATGTAAAA 57.044 32.000 0.00 0.00 40.74 1.52
179 180 7.773864 TGACTGTTCGACAAGTATGTAAAAA 57.226 32.000 0.00 0.00 40.74 1.94
180 181 7.847487 TGACTGTTCGACAAGTATGTAAAAAG 58.153 34.615 0.00 0.00 40.74 2.27
181 182 7.493320 TGACTGTTCGACAAGTATGTAAAAAGT 59.507 33.333 0.00 0.00 40.74 2.66
182 183 8.205131 ACTGTTCGACAAGTATGTAAAAAGTT 57.795 30.769 0.00 0.00 40.74 2.66
183 184 8.671028 ACTGTTCGACAAGTATGTAAAAAGTTT 58.329 29.630 0.00 0.00 40.74 2.66
184 185 9.155053 CTGTTCGACAAGTATGTAAAAAGTTTC 57.845 33.333 0.00 0.00 40.74 2.78
185 186 8.666573 TGTTCGACAAGTATGTAAAAAGTTTCA 58.333 29.630 0.00 0.00 40.74 2.69
186 187 9.659830 GTTCGACAAGTATGTAAAAAGTTTCAT 57.340 29.630 0.00 0.00 40.74 2.57
187 188 9.872757 TTCGACAAGTATGTAAAAAGTTTCATC 57.127 29.630 0.00 0.00 40.74 2.92
188 189 9.047371 TCGACAAGTATGTAAAAAGTTTCATCA 57.953 29.630 0.00 0.00 40.74 3.07
189 190 9.318041 CGACAAGTATGTAAAAAGTTTCATCAG 57.682 33.333 0.00 0.00 40.74 2.90
190 191 9.612620 GACAAGTATGTAAAAAGTTTCATCAGG 57.387 33.333 0.00 0.00 40.74 3.86
191 192 9.131791 ACAAGTATGTAAAAAGTTTCATCAGGT 57.868 29.630 0.00 0.00 38.24 4.00
197 198 9.840427 ATGTAAAAAGTTTCATCAGGTAATTCG 57.160 29.630 0.00 0.00 0.00 3.34
198 199 9.058174 TGTAAAAAGTTTCATCAGGTAATTCGA 57.942 29.630 0.00 0.00 0.00 3.71
201 202 7.921786 AAAGTTTCATCAGGTAATTCGATCA 57.078 32.000 0.00 0.00 0.00 2.92
202 203 8.511604 AAAGTTTCATCAGGTAATTCGATCAT 57.488 30.769 0.00 0.00 0.00 2.45
203 204 8.511604 AAGTTTCATCAGGTAATTCGATCATT 57.488 30.769 0.00 0.00 0.00 2.57
204 205 8.511604 AGTTTCATCAGGTAATTCGATCATTT 57.488 30.769 0.00 0.00 0.00 2.32
205 206 8.400947 AGTTTCATCAGGTAATTCGATCATTTG 58.599 33.333 0.00 0.00 0.00 2.32
206 207 6.304356 TCATCAGGTAATTCGATCATTTGC 57.696 37.500 0.00 0.00 0.00 3.68
207 208 5.821995 TCATCAGGTAATTCGATCATTTGCA 59.178 36.000 0.00 0.00 0.00 4.08
208 209 6.487668 TCATCAGGTAATTCGATCATTTGCAT 59.512 34.615 0.00 0.00 0.00 3.96
209 210 6.063640 TCAGGTAATTCGATCATTTGCATG 57.936 37.500 0.00 0.00 0.00 4.06
210 211 4.678287 CAGGTAATTCGATCATTTGCATGC 59.322 41.667 11.82 11.82 0.00 4.06
211 212 4.581824 AGGTAATTCGATCATTTGCATGCT 59.418 37.500 20.33 0.00 0.00 3.79
212 213 5.764686 AGGTAATTCGATCATTTGCATGCTA 59.235 36.000 20.33 8.83 0.00 3.49
213 214 5.853282 GGTAATTCGATCATTTGCATGCTAC 59.147 40.000 20.33 7.72 0.00 3.58
214 215 5.503662 AATTCGATCATTTGCATGCTACA 57.496 34.783 20.33 2.63 0.00 2.74
215 216 3.950087 TCGATCATTTGCATGCTACAC 57.050 42.857 20.33 3.30 0.00 2.90
216 217 3.269178 TCGATCATTTGCATGCTACACA 58.731 40.909 20.33 0.13 0.00 3.72
217 218 3.688673 TCGATCATTTGCATGCTACACAA 59.311 39.130 20.33 0.58 0.00 3.33
218 219 4.155644 TCGATCATTTGCATGCTACACAAA 59.844 37.500 20.33 10.86 37.66 2.83
219 220 4.858140 CGATCATTTGCATGCTACACAAAA 59.142 37.500 20.33 10.10 36.90 2.44
220 221 5.345472 CGATCATTTGCATGCTACACAAAAA 59.655 36.000 20.33 9.35 36.90 1.94
246 247 9.830975 AATATAAATATCTGGCCCAAAAACAAC 57.169 29.630 0.00 0.00 0.00 3.32
247 248 5.559148 AAATATCTGGCCCAAAAACAACA 57.441 34.783 0.00 0.00 0.00 3.33
248 249 5.559148 AATATCTGGCCCAAAAACAACAA 57.441 34.783 0.00 0.00 0.00 2.83
249 250 3.922171 ATCTGGCCCAAAAACAACAAA 57.078 38.095 0.00 0.00 0.00 2.83
250 251 3.258971 TCTGGCCCAAAAACAACAAAG 57.741 42.857 0.00 0.00 0.00 2.77
251 252 2.834549 TCTGGCCCAAAAACAACAAAGA 59.165 40.909 0.00 0.00 0.00 2.52
252 253 3.454082 TCTGGCCCAAAAACAACAAAGAT 59.546 39.130 0.00 0.00 0.00 2.40
253 254 4.651503 TCTGGCCCAAAAACAACAAAGATA 59.348 37.500 0.00 0.00 0.00 1.98
254 255 5.129485 TCTGGCCCAAAAACAACAAAGATAA 59.871 36.000 0.00 0.00 0.00 1.75
255 256 5.745227 TGGCCCAAAAACAACAAAGATAAA 58.255 33.333 0.00 0.00 0.00 1.40
256 257 5.819901 TGGCCCAAAAACAACAAAGATAAAG 59.180 36.000 0.00 0.00 0.00 1.85
257 258 5.277779 GGCCCAAAAACAACAAAGATAAAGC 60.278 40.000 0.00 0.00 0.00 3.51
258 259 5.277779 GCCCAAAAACAACAAAGATAAAGCC 60.278 40.000 0.00 0.00 0.00 4.35
259 260 5.238432 CCCAAAAACAACAAAGATAAAGCCC 59.762 40.000 0.00 0.00 0.00 5.19
260 261 5.819901 CCAAAAACAACAAAGATAAAGCCCA 59.180 36.000 0.00 0.00 0.00 5.36
261 262 6.486320 CCAAAAACAACAAAGATAAAGCCCAT 59.514 34.615 0.00 0.00 0.00 4.00
262 263 7.013178 CCAAAAACAACAAAGATAAAGCCCATT 59.987 33.333 0.00 0.00 0.00 3.16
263 264 8.404765 CAAAAACAACAAAGATAAAGCCCATTT 58.595 29.630 0.00 0.00 34.72 2.32
264 265 8.518430 AAAACAACAAAGATAAAGCCCATTTT 57.482 26.923 0.00 0.00 32.01 1.82
265 266 8.518430 AAACAACAAAGATAAAGCCCATTTTT 57.482 26.923 0.00 0.00 32.01 1.94
266 267 9.620259 AAACAACAAAGATAAAGCCCATTTTTA 57.380 25.926 0.00 0.00 32.01 1.52
267 268 9.791801 AACAACAAAGATAAAGCCCATTTTTAT 57.208 25.926 0.00 0.00 34.36 1.40
268 269 9.435688 ACAACAAAGATAAAGCCCATTTTTATC 57.564 29.630 8.83 8.83 43.18 1.75
281 282 9.646522 AGCCCATTTTTATCTGTGTATTTATCT 57.353 29.630 0.00 0.00 0.00 1.98
413 414 9.868277 ATGTGGAAATAATATTTTCGCTGAAAA 57.132 25.926 16.00 15.34 44.04 2.29
414 415 9.698309 TGTGGAAATAATATTTTCGCTGAAAAA 57.302 25.926 16.00 5.95 43.32 1.94
441 442 3.076092 CTCTGTGGAGCTTGGCCT 58.924 61.111 3.32 0.00 32.43 5.19
442 443 1.377994 CTCTGTGGAGCTTGGCCTT 59.622 57.895 3.32 0.00 32.43 4.35
443 444 0.251077 CTCTGTGGAGCTTGGCCTTT 60.251 55.000 3.32 0.00 32.43 3.11
444 445 0.538057 TCTGTGGAGCTTGGCCTTTG 60.538 55.000 3.32 0.00 0.00 2.77
445 446 2.151049 CTGTGGAGCTTGGCCTTTGC 62.151 60.000 3.32 5.63 0.00 3.68
446 447 1.905354 GTGGAGCTTGGCCTTTGCT 60.905 57.895 15.48 15.48 40.02 3.91
447 448 0.609131 GTGGAGCTTGGCCTTTGCTA 60.609 55.000 15.51 1.66 37.16 3.49
448 449 0.332632 TGGAGCTTGGCCTTTGCTAT 59.667 50.000 15.51 0.00 37.16 2.97
449 450 0.743097 GGAGCTTGGCCTTTGCTATG 59.257 55.000 15.51 0.00 37.16 2.23
450 451 0.101939 GAGCTTGGCCTTTGCTATGC 59.898 55.000 15.51 3.42 45.64 3.14
451 452 2.196319 GCTTGGCCTTTGCTATGCT 58.804 52.632 3.32 0.00 43.13 3.79
452 453 0.533951 GCTTGGCCTTTGCTATGCTT 59.466 50.000 3.32 0.00 43.13 3.91
453 454 1.066645 GCTTGGCCTTTGCTATGCTTT 60.067 47.619 3.32 0.00 43.13 3.51
454 455 2.613725 GCTTGGCCTTTGCTATGCTTTT 60.614 45.455 3.32 0.00 43.13 2.27
455 456 3.667360 CTTGGCCTTTGCTATGCTTTTT 58.333 40.909 3.32 0.00 37.74 1.94
456 457 3.317603 TGGCCTTTGCTATGCTTTTTC 57.682 42.857 3.32 0.00 37.74 2.29
457 458 2.632028 TGGCCTTTGCTATGCTTTTTCA 59.368 40.909 3.32 0.00 37.74 2.69
458 459 3.261390 TGGCCTTTGCTATGCTTTTTCAT 59.739 39.130 3.32 0.00 37.74 2.57
459 460 3.619929 GGCCTTTGCTATGCTTTTTCATG 59.380 43.478 0.00 0.00 37.74 3.07
460 461 4.497300 GCCTTTGCTATGCTTTTTCATGA 58.503 39.130 0.00 0.00 33.53 3.07
461 462 5.114081 GCCTTTGCTATGCTTTTTCATGAT 58.886 37.500 0.00 0.00 33.53 2.45
462 463 5.006358 GCCTTTGCTATGCTTTTTCATGATG 59.994 40.000 0.00 0.00 33.53 3.07
463 464 6.103997 CCTTTGCTATGCTTTTTCATGATGT 58.896 36.000 0.00 0.00 0.00 3.06
464 465 7.259882 CCTTTGCTATGCTTTTTCATGATGTA 58.740 34.615 0.00 0.00 0.00 2.29
465 466 7.221452 CCTTTGCTATGCTTTTTCATGATGTAC 59.779 37.037 0.00 0.00 0.00 2.90
466 467 6.135290 TGCTATGCTTTTTCATGATGTACC 57.865 37.500 0.00 0.00 0.00 3.34
467 468 5.067674 TGCTATGCTTTTTCATGATGTACCC 59.932 40.000 0.00 0.00 0.00 3.69
468 469 5.300286 GCTATGCTTTTTCATGATGTACCCT 59.700 40.000 0.00 0.00 0.00 4.34
469 470 5.841957 ATGCTTTTTCATGATGTACCCTC 57.158 39.130 0.00 0.00 0.00 4.30
470 471 4.016444 TGCTTTTTCATGATGTACCCTCC 58.984 43.478 0.00 0.00 0.00 4.30
471 472 3.381590 GCTTTTTCATGATGTACCCTCCC 59.618 47.826 0.00 0.00 0.00 4.30
472 473 4.860022 CTTTTTCATGATGTACCCTCCCT 58.140 43.478 0.00 0.00 0.00 4.20
473 474 4.946160 TTTTCATGATGTACCCTCCCTT 57.054 40.909 0.00 0.00 0.00 3.95
474 475 4.946160 TTTCATGATGTACCCTCCCTTT 57.054 40.909 0.00 0.00 0.00 3.11
475 476 6.395780 TTTTCATGATGTACCCTCCCTTTA 57.604 37.500 0.00 0.00 0.00 1.85
476 477 5.367945 TTCATGATGTACCCTCCCTTTAC 57.632 43.478 0.00 0.00 0.00 2.01
477 478 3.714798 TCATGATGTACCCTCCCTTTACC 59.285 47.826 0.00 0.00 0.00 2.85
478 479 2.112998 TGATGTACCCTCCCTTTACCG 58.887 52.381 0.00 0.00 0.00 4.02
479 480 2.292389 TGATGTACCCTCCCTTTACCGA 60.292 50.000 0.00 0.00 0.00 4.69
480 481 2.323999 TGTACCCTCCCTTTACCGAA 57.676 50.000 0.00 0.00 0.00 4.30
481 482 2.618794 TGTACCCTCCCTTTACCGAAA 58.381 47.619 0.00 0.00 0.00 3.46
482 483 2.978278 TGTACCCTCCCTTTACCGAAAA 59.022 45.455 0.00 0.00 0.00 2.29
483 484 3.393941 TGTACCCTCCCTTTACCGAAAAA 59.606 43.478 0.00 0.00 0.00 1.94
484 485 3.150458 ACCCTCCCTTTACCGAAAAAG 57.850 47.619 3.29 3.29 36.43 2.27
492 493 4.247267 CTTTACCGAAAAAGGGTTTCCC 57.753 45.455 0.00 0.00 45.90 3.97
501 502 2.203582 GGGTTTCCCCCGCTTTGT 60.204 61.111 0.00 0.00 45.80 2.83
502 503 1.075305 GGGTTTCCCCCGCTTTGTA 59.925 57.895 0.00 0.00 45.80 2.41
503 504 0.323999 GGGTTTCCCCCGCTTTGTAT 60.324 55.000 0.00 0.00 45.80 2.29
504 505 1.552578 GGTTTCCCCCGCTTTGTATT 58.447 50.000 0.00 0.00 0.00 1.89
505 506 1.475280 GGTTTCCCCCGCTTTGTATTC 59.525 52.381 0.00 0.00 0.00 1.75
506 507 1.475280 GTTTCCCCCGCTTTGTATTCC 59.525 52.381 0.00 0.00 0.00 3.01
507 508 0.699399 TTCCCCCGCTTTGTATTCCA 59.301 50.000 0.00 0.00 0.00 3.53
508 509 0.699399 TCCCCCGCTTTGTATTCCAA 59.301 50.000 0.00 0.00 0.00 3.53
509 510 1.075698 TCCCCCGCTTTGTATTCCAAA 59.924 47.619 0.00 0.00 40.71 3.28
519 520 5.344743 TTTGTATTCCAAAGCAACCAACA 57.655 34.783 0.00 0.00 38.12 3.33
520 521 4.314740 TGTATTCCAAAGCAACCAACAC 57.685 40.909 0.00 0.00 0.00 3.32
521 522 2.908688 ATTCCAAAGCAACCAACACC 57.091 45.000 0.00 0.00 0.00 4.16
522 523 0.457851 TTCCAAAGCAACCAACACCG 59.542 50.000 0.00 0.00 0.00 4.94
523 524 0.394488 TCCAAAGCAACCAACACCGA 60.394 50.000 0.00 0.00 0.00 4.69
524 525 0.673437 CCAAAGCAACCAACACCGAT 59.327 50.000 0.00 0.00 0.00 4.18
525 526 1.883275 CCAAAGCAACCAACACCGATA 59.117 47.619 0.00 0.00 0.00 2.92
526 527 2.351350 CCAAAGCAACCAACACCGATAC 60.351 50.000 0.00 0.00 0.00 2.24
527 528 2.264005 AAGCAACCAACACCGATACA 57.736 45.000 0.00 0.00 0.00 2.29
528 529 2.264005 AGCAACCAACACCGATACAA 57.736 45.000 0.00 0.00 0.00 2.41
529 530 2.151202 AGCAACCAACACCGATACAAG 58.849 47.619 0.00 0.00 0.00 3.16
530 531 1.199097 GCAACCAACACCGATACAAGG 59.801 52.381 0.00 0.00 0.00 3.61
531 532 2.773487 CAACCAACACCGATACAAGGA 58.227 47.619 0.00 0.00 0.00 3.36
532 533 3.343617 CAACCAACACCGATACAAGGAT 58.656 45.455 0.00 0.00 0.00 3.24
533 534 3.261981 ACCAACACCGATACAAGGATC 57.738 47.619 0.00 0.00 0.00 3.36
534 535 2.201732 CCAACACCGATACAAGGATCG 58.798 52.381 7.70 7.70 46.62 3.69
535 536 2.418197 CCAACACCGATACAAGGATCGT 60.418 50.000 13.16 0.00 45.82 3.73
536 537 3.259064 CAACACCGATACAAGGATCGTT 58.741 45.455 13.16 0.00 45.82 3.85
537 538 2.888594 ACACCGATACAAGGATCGTTG 58.111 47.619 23.09 23.09 45.82 4.10
538 539 2.201732 CACCGATACAAGGATCGTTGG 58.798 52.381 26.86 14.42 45.82 3.77
539 540 1.138266 ACCGATACAAGGATCGTTGGG 59.862 52.381 26.86 20.78 45.82 4.12
540 541 1.540363 CCGATACAAGGATCGTTGGGG 60.540 57.143 26.86 18.92 45.82 4.96
541 542 1.594331 GATACAAGGATCGTTGGGGC 58.406 55.000 26.86 14.23 0.00 5.80
542 543 1.141053 GATACAAGGATCGTTGGGGCT 59.859 52.381 26.86 12.20 0.00 5.19
543 544 1.868713 TACAAGGATCGTTGGGGCTA 58.131 50.000 26.86 11.33 0.00 3.93
544 545 0.541863 ACAAGGATCGTTGGGGCTAG 59.458 55.000 26.86 5.65 0.00 3.42
545 546 0.815615 CAAGGATCGTTGGGGCTAGC 60.816 60.000 18.34 6.04 0.00 3.42
546 547 1.271840 AAGGATCGTTGGGGCTAGCA 61.272 55.000 18.24 0.00 0.00 3.49
547 548 1.227674 GGATCGTTGGGGCTAGCAG 60.228 63.158 18.24 0.27 0.00 4.24
548 549 1.889573 GATCGTTGGGGCTAGCAGC 60.890 63.158 18.24 0.00 41.46 5.25
549 550 2.593468 GATCGTTGGGGCTAGCAGCA 62.593 60.000 18.24 0.00 44.75 4.41
550 551 2.876368 ATCGTTGGGGCTAGCAGCAC 62.876 60.000 18.24 1.01 45.94 4.40
555 556 4.137879 GGGCTAGCAGCACATCAG 57.862 61.111 18.24 0.00 45.95 2.90
556 557 1.525535 GGGCTAGCAGCACATCAGG 60.526 63.158 18.24 0.00 45.95 3.86
557 558 2.185494 GGCTAGCAGCACATCAGGC 61.185 63.158 18.24 0.00 44.75 4.85
558 559 2.185494 GCTAGCAGCACATCAGGCC 61.185 63.158 10.63 0.00 41.89 5.19
559 560 1.525535 CTAGCAGCACATCAGGCCC 60.526 63.158 0.00 0.00 0.00 5.80
591 592 4.295201 AGGGTTAATTATCCTTTTGCCCC 58.705 43.478 11.51 0.00 34.34 5.80
693 695 1.285950 CGTGAACTCTGCCGTCTCA 59.714 57.895 0.00 0.00 0.00 3.27
731 733 4.109675 CGGCCCTTACAGGTGGGG 62.110 72.222 0.00 7.61 43.53 4.96
902 904 1.711060 GACCACGGCGAGAGAGAGAG 61.711 65.000 16.62 0.00 0.00 3.20
903 905 1.450491 CCACGGCGAGAGAGAGAGA 60.450 63.158 16.62 0.00 0.00 3.10
936 940 3.775654 GCTAGCTGTGGAGGGCGT 61.776 66.667 7.70 0.00 0.00 5.68
1014 1018 2.499289 GAGCTCCATGTCTTCCTCAAGA 59.501 50.000 0.87 0.00 36.19 3.02
1227 1231 3.841643 GAGCAATGGGTTGATCTGTTTG 58.158 45.455 0.00 0.00 45.03 2.93
1385 1389 2.114616 AGAAGAGATGGATGGCGAAGT 58.885 47.619 0.00 0.00 0.00 3.01
1503 1507 9.482175 AAATACTTTTGGGCATTTGTAGGTATA 57.518 29.630 0.00 0.00 0.00 1.47
1550 1554 8.915654 GTTGAAAATGTATGGAAAGTCATGAAC 58.084 33.333 0.00 0.00 0.00 3.18
1608 1612 6.216868 AGAAATTCACCTAGTTTAAGGGCCTA 59.783 38.462 6.41 0.00 41.32 3.93
1640 1644 2.586425 CCCAGCTTCTCAAAACTCCAA 58.414 47.619 0.00 0.00 0.00 3.53
1661 1665 3.320673 AAAACCAGCTTCTACTCCTCG 57.679 47.619 0.00 0.00 0.00 4.63
1662 1666 0.533032 AACCAGCTTCTACTCCTCGC 59.467 55.000 0.00 0.00 0.00 5.03
1663 1667 0.323908 ACCAGCTTCTACTCCTCGCT 60.324 55.000 0.00 0.00 0.00 4.93
1664 1668 0.820871 CCAGCTTCTACTCCTCGCTT 59.179 55.000 0.00 0.00 0.00 4.68
1695 1699 4.352386 GCTTCAGCTAGCGATCCC 57.648 61.111 9.55 0.00 38.21 3.85
1717 1721 3.253955 GCGTTCGGCTCAATGTGT 58.746 55.556 0.00 0.00 39.11 3.72
1737 1741 2.260869 GCTTCTCCCGTTGCTGCAA 61.261 57.895 11.69 11.69 0.00 4.08
1760 1764 3.346734 TTGGGAGGGGATGTGGCC 61.347 66.667 0.00 0.00 0.00 5.36
1822 1826 2.101770 GGTACCGGTTCGAGCGAG 59.898 66.667 15.04 0.00 42.41 5.03
1834 1838 0.372679 CGAGCGAGACTAGCGTAACA 59.627 55.000 1.63 0.00 40.04 2.41
1838 1842 2.159544 AGCGAGACTAGCGTAACACTTC 60.160 50.000 1.63 0.00 40.04 3.01
1874 1878 2.650813 ATTCGACGAGGGGATGCAGC 62.651 60.000 0.00 0.00 0.00 5.25
1878 1882 2.587194 CGAGGGGATGCAGCGAAG 60.587 66.667 0.00 0.00 0.00 3.79
1933 1937 4.336581 CGAACTCCACGCTTCACA 57.663 55.556 0.00 0.00 0.00 3.58
1937 1941 2.734606 CGAACTCCACGCTTCACATTTA 59.265 45.455 0.00 0.00 0.00 1.40
1982 1986 4.741321 TCCGATTTTTACACTACGGGAT 57.259 40.909 0.00 0.00 40.59 3.85
2009 2013 3.188048 CAGCTTCGTGAATTCAGCTTCTT 59.812 43.478 15.18 0.00 0.00 2.52
2015 2019 3.347216 GTGAATTCAGCTTCTTGGGCTA 58.653 45.455 8.80 0.00 38.03 3.93
2038 2042 4.340950 ACAACCGTTCTGGACAAATTCATT 59.659 37.500 0.00 0.00 42.00 2.57
2062 2066 1.947456 GAAGTTTTGGAAGCGTGGAGT 59.053 47.619 0.00 0.00 0.00 3.85
2080 2084 3.054802 GGAGTTGGAGGACATCAGAACAT 60.055 47.826 4.65 0.00 0.00 2.71
2133 2137 7.761651 ATGTTGAAACAAAAAGAGAAGAAGC 57.238 32.000 0.00 0.00 43.03 3.86
2231 2235 0.035881 CTGCTCTGCCTTTCTGTCCA 59.964 55.000 0.00 0.00 0.00 4.02
2343 2347 4.684242 CAGGGGTTTTCTTGCGTATTTTTC 59.316 41.667 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.494632 TTATCAGATTGCAGTGCAGAATG 57.505 39.130 18.81 16.83 40.61 2.67
21 22 7.997773 ATATTATCAGATTGCAGTGCAGAAT 57.002 32.000 18.81 10.13 40.61 2.40
22 23 7.388776 GGTATATTATCAGATTGCAGTGCAGAA 59.611 37.037 18.81 4.71 40.61 3.02
23 24 6.875726 GGTATATTATCAGATTGCAGTGCAGA 59.124 38.462 18.81 12.49 40.61 4.26
24 25 6.093219 GGGTATATTATCAGATTGCAGTGCAG 59.907 42.308 18.81 6.84 40.61 4.41
25 26 5.939883 GGGTATATTATCAGATTGCAGTGCA 59.060 40.000 15.37 15.37 36.47 4.57
26 27 5.063944 CGGGTATATTATCAGATTGCAGTGC 59.936 44.000 8.58 8.58 0.00 4.40
27 28 6.398095 TCGGGTATATTATCAGATTGCAGTG 58.602 40.000 0.00 0.00 0.00 3.66
28 29 6.605471 TCGGGTATATTATCAGATTGCAGT 57.395 37.500 0.00 0.00 0.00 4.40
29 30 6.035005 CGTTCGGGTATATTATCAGATTGCAG 59.965 42.308 0.00 0.00 0.00 4.41
30 31 5.867174 CGTTCGGGTATATTATCAGATTGCA 59.133 40.000 0.00 0.00 0.00 4.08
31 32 6.097356 TCGTTCGGGTATATTATCAGATTGC 58.903 40.000 0.00 0.00 0.00 3.56
32 33 6.752351 CCTCGTTCGGGTATATTATCAGATTG 59.248 42.308 0.00 0.00 0.00 2.67
33 34 6.627508 GCCTCGTTCGGGTATATTATCAGATT 60.628 42.308 0.00 0.00 0.00 2.40
34 35 5.163540 GCCTCGTTCGGGTATATTATCAGAT 60.164 44.000 0.00 0.00 0.00 2.90
35 36 4.157289 GCCTCGTTCGGGTATATTATCAGA 59.843 45.833 0.00 0.00 0.00 3.27
36 37 4.421948 GCCTCGTTCGGGTATATTATCAG 58.578 47.826 0.00 0.00 0.00 2.90
37 38 3.119743 CGCCTCGTTCGGGTATATTATCA 60.120 47.826 0.00 0.00 0.00 2.15
38 39 3.119708 ACGCCTCGTTCGGGTATATTATC 60.120 47.826 0.00 0.00 36.35 1.75
39 40 2.821969 ACGCCTCGTTCGGGTATATTAT 59.178 45.455 0.00 0.00 36.35 1.28
40 41 2.226437 GACGCCTCGTTCGGGTATATTA 59.774 50.000 0.00 0.00 41.37 0.98
41 42 1.000938 GACGCCTCGTTCGGGTATATT 60.001 52.381 0.00 0.00 41.37 1.28
42 43 0.595095 GACGCCTCGTTCGGGTATAT 59.405 55.000 0.00 0.00 41.37 0.86
43 44 1.775039 CGACGCCTCGTTCGGGTATA 61.775 60.000 0.00 0.00 41.37 1.47
44 45 2.803479 GACGCCTCGTTCGGGTAT 59.197 61.111 0.00 0.00 41.37 2.73
45 46 3.803082 CGACGCCTCGTTCGGGTA 61.803 66.667 0.00 0.00 41.37 3.69
69 70 2.515996 TAAAACGAGCTGGAGCCCGG 62.516 60.000 7.49 0.00 46.74 5.73
71 72 1.025113 GGTAAAACGAGCTGGAGCCC 61.025 60.000 1.44 0.00 43.38 5.19
72 73 0.321298 TGGTAAAACGAGCTGGAGCC 60.321 55.000 1.44 0.00 43.38 4.70
73 74 1.519408 TTGGTAAAACGAGCTGGAGC 58.481 50.000 1.44 0.00 42.49 4.70
74 75 3.399330 TCTTTGGTAAAACGAGCTGGAG 58.601 45.455 1.44 0.00 0.00 3.86
75 76 3.478857 TCTTTGGTAAAACGAGCTGGA 57.521 42.857 1.44 0.00 0.00 3.86
76 77 4.561735 TTTCTTTGGTAAAACGAGCTGG 57.438 40.909 0.00 0.00 0.00 4.85
77 78 6.695278 TGATTTTTCTTTGGTAAAACGAGCTG 59.305 34.615 0.00 0.00 0.00 4.24
78 79 6.801575 TGATTTTTCTTTGGTAAAACGAGCT 58.198 32.000 0.00 0.00 0.00 4.09
79 80 6.915843 TCTGATTTTTCTTTGGTAAAACGAGC 59.084 34.615 0.00 0.00 0.00 5.03
80 81 8.850454 TTCTGATTTTTCTTTGGTAAAACGAG 57.150 30.769 0.00 0.00 0.00 4.18
81 82 9.243637 CATTCTGATTTTTCTTTGGTAAAACGA 57.756 29.630 0.00 0.00 0.00 3.85
82 83 9.030301 ACATTCTGATTTTTCTTTGGTAAAACG 57.970 29.630 0.00 0.00 0.00 3.60
87 88 9.567776 TCAGTACATTCTGATTTTTCTTTGGTA 57.432 29.630 0.00 0.00 39.20 3.25
88 89 8.463930 TCAGTACATTCTGATTTTTCTTTGGT 57.536 30.769 0.00 0.00 39.20 3.67
89 90 9.748708 TTTCAGTACATTCTGATTTTTCTTTGG 57.251 29.630 0.00 0.00 42.84 3.28
142 143 9.594478 TTGTCGAACAGTCATATGTATTTGTAT 57.406 29.630 1.90 0.00 31.70 2.29
143 144 8.989653 TTGTCGAACAGTCATATGTATTTGTA 57.010 30.769 1.90 0.00 31.70 2.41
144 145 7.602644 ACTTGTCGAACAGTCATATGTATTTGT 59.397 33.333 1.90 1.10 31.70 2.83
145 146 7.963981 ACTTGTCGAACAGTCATATGTATTTG 58.036 34.615 1.90 0.50 31.70 2.32
146 147 9.817809 ATACTTGTCGAACAGTCATATGTATTT 57.182 29.630 1.90 0.00 31.70 1.40
147 148 9.249457 CATACTTGTCGAACAGTCATATGTATT 57.751 33.333 1.90 0.00 31.70 1.89
148 149 8.414003 ACATACTTGTCGAACAGTCATATGTAT 58.586 33.333 1.90 0.00 29.69 2.29
149 150 7.768240 ACATACTTGTCGAACAGTCATATGTA 58.232 34.615 1.90 0.00 29.69 2.29
150 151 6.631016 ACATACTTGTCGAACAGTCATATGT 58.369 36.000 1.90 4.27 33.96 2.29
151 152 8.628882 TTACATACTTGTCGAACAGTCATATG 57.371 34.615 1.05 0.00 37.28 1.78
152 153 9.647797 TTTTACATACTTGTCGAACAGTCATAT 57.352 29.630 1.05 0.00 37.28 1.78
153 154 9.478768 TTTTTACATACTTGTCGAACAGTCATA 57.521 29.630 1.05 0.00 37.28 2.15
154 155 7.956420 TTTTACATACTTGTCGAACAGTCAT 57.044 32.000 1.05 0.00 37.28 3.06
155 156 7.493320 ACTTTTTACATACTTGTCGAACAGTCA 59.507 33.333 1.05 0.00 37.28 3.41
156 157 7.848491 ACTTTTTACATACTTGTCGAACAGTC 58.152 34.615 1.05 0.00 37.28 3.51
157 158 7.781548 ACTTTTTACATACTTGTCGAACAGT 57.218 32.000 3.41 3.41 37.28 3.55
158 159 9.155053 GAAACTTTTTACATACTTGTCGAACAG 57.845 33.333 0.00 0.00 37.28 3.16
159 160 8.666573 TGAAACTTTTTACATACTTGTCGAACA 58.333 29.630 0.00 0.00 37.28 3.18
160 161 9.659830 ATGAAACTTTTTACATACTTGTCGAAC 57.340 29.630 0.00 0.00 37.28 3.95
161 162 9.872757 GATGAAACTTTTTACATACTTGTCGAA 57.127 29.630 0.00 0.00 37.28 3.71
162 163 9.047371 TGATGAAACTTTTTACATACTTGTCGA 57.953 29.630 0.00 0.00 37.28 4.20
163 164 9.318041 CTGATGAAACTTTTTACATACTTGTCG 57.682 33.333 0.00 0.00 37.28 4.35
164 165 9.612620 CCTGATGAAACTTTTTACATACTTGTC 57.387 33.333 0.00 0.00 37.28 3.18
165 166 9.131791 ACCTGATGAAACTTTTTACATACTTGT 57.868 29.630 0.00 0.00 39.98 3.16
171 172 9.840427 CGAATTACCTGATGAAACTTTTTACAT 57.160 29.630 0.00 0.00 0.00 2.29
172 173 9.058174 TCGAATTACCTGATGAAACTTTTTACA 57.942 29.630 0.00 0.00 0.00 2.41
175 176 8.792633 TGATCGAATTACCTGATGAAACTTTTT 58.207 29.630 0.00 0.00 0.00 1.94
176 177 8.335532 TGATCGAATTACCTGATGAAACTTTT 57.664 30.769 0.00 0.00 0.00 2.27
177 178 7.921786 TGATCGAATTACCTGATGAAACTTT 57.078 32.000 0.00 0.00 0.00 2.66
178 179 8.511604 AATGATCGAATTACCTGATGAAACTT 57.488 30.769 0.00 0.00 0.00 2.66
179 180 8.400947 CAAATGATCGAATTACCTGATGAAACT 58.599 33.333 0.00 0.00 0.00 2.66
180 181 7.166473 GCAAATGATCGAATTACCTGATGAAAC 59.834 37.037 0.00 0.00 0.00 2.78
181 182 7.148103 TGCAAATGATCGAATTACCTGATGAAA 60.148 33.333 0.00 0.00 0.00 2.69
182 183 6.318396 TGCAAATGATCGAATTACCTGATGAA 59.682 34.615 0.00 0.00 0.00 2.57
183 184 5.821995 TGCAAATGATCGAATTACCTGATGA 59.178 36.000 0.00 0.00 0.00 2.92
184 185 6.063640 TGCAAATGATCGAATTACCTGATG 57.936 37.500 0.00 0.00 0.00 3.07
185 186 6.675026 CATGCAAATGATCGAATTACCTGAT 58.325 36.000 0.00 0.00 0.00 2.90
186 187 5.506151 GCATGCAAATGATCGAATTACCTGA 60.506 40.000 14.21 0.00 0.00 3.86
187 188 4.678287 GCATGCAAATGATCGAATTACCTG 59.322 41.667 14.21 0.00 0.00 4.00
188 189 4.581824 AGCATGCAAATGATCGAATTACCT 59.418 37.500 21.98 0.00 0.00 3.08
189 190 4.863491 AGCATGCAAATGATCGAATTACC 58.137 39.130 21.98 0.00 0.00 2.85
190 191 6.358030 GTGTAGCATGCAAATGATCGAATTAC 59.642 38.462 21.98 9.03 27.52 1.89
191 192 6.038050 TGTGTAGCATGCAAATGATCGAATTA 59.962 34.615 21.98 0.00 27.52 1.40
192 193 5.163632 TGTGTAGCATGCAAATGATCGAATT 60.164 36.000 21.98 0.00 27.52 2.17
193 194 4.336153 TGTGTAGCATGCAAATGATCGAAT 59.664 37.500 21.98 0.00 27.52 3.34
194 195 3.688673 TGTGTAGCATGCAAATGATCGAA 59.311 39.130 21.98 0.00 27.52 3.71
195 196 3.269178 TGTGTAGCATGCAAATGATCGA 58.731 40.909 21.98 0.00 27.52 3.59
196 197 3.678915 TGTGTAGCATGCAAATGATCG 57.321 42.857 21.98 0.00 27.52 3.69
197 198 6.709145 TTTTTGTGTAGCATGCAAATGATC 57.291 33.333 21.98 4.03 33.00 2.92
220 221 9.830975 GTTGTTTTTGGGCCAGATATTTATATT 57.169 29.630 6.23 0.00 0.00 1.28
221 222 8.986991 TGTTGTTTTTGGGCCAGATATTTATAT 58.013 29.630 6.23 0.00 0.00 0.86
222 223 8.367660 TGTTGTTTTTGGGCCAGATATTTATA 57.632 30.769 6.23 0.00 0.00 0.98
223 224 7.251321 TGTTGTTTTTGGGCCAGATATTTAT 57.749 32.000 6.23 0.00 0.00 1.40
224 225 6.672266 TGTTGTTTTTGGGCCAGATATTTA 57.328 33.333 6.23 0.00 0.00 1.40
225 226 5.559148 TGTTGTTTTTGGGCCAGATATTT 57.441 34.783 6.23 0.00 0.00 1.40
226 227 5.559148 TTGTTGTTTTTGGGCCAGATATT 57.441 34.783 6.23 0.00 0.00 1.28
227 228 5.306678 TCTTTGTTGTTTTTGGGCCAGATAT 59.693 36.000 6.23 0.00 0.00 1.63
228 229 4.651503 TCTTTGTTGTTTTTGGGCCAGATA 59.348 37.500 6.23 0.00 0.00 1.98
229 230 3.454082 TCTTTGTTGTTTTTGGGCCAGAT 59.546 39.130 6.23 0.00 0.00 2.90
230 231 2.834549 TCTTTGTTGTTTTTGGGCCAGA 59.165 40.909 6.23 0.00 0.00 3.86
231 232 3.258971 TCTTTGTTGTTTTTGGGCCAG 57.741 42.857 6.23 0.00 0.00 4.85
232 233 3.922171 ATCTTTGTTGTTTTTGGGCCA 57.078 38.095 0.00 0.00 0.00 5.36
233 234 5.277779 GCTTTATCTTTGTTGTTTTTGGGCC 60.278 40.000 0.00 0.00 0.00 5.80
234 235 5.277779 GGCTTTATCTTTGTTGTTTTTGGGC 60.278 40.000 0.00 0.00 0.00 5.36
235 236 5.238432 GGGCTTTATCTTTGTTGTTTTTGGG 59.762 40.000 0.00 0.00 0.00 4.12
236 237 5.819901 TGGGCTTTATCTTTGTTGTTTTTGG 59.180 36.000 0.00 0.00 0.00 3.28
237 238 6.917217 TGGGCTTTATCTTTGTTGTTTTTG 57.083 33.333 0.00 0.00 0.00 2.44
238 239 8.518430 AAATGGGCTTTATCTTTGTTGTTTTT 57.482 26.923 0.00 0.00 0.00 1.94
239 240 8.518430 AAAATGGGCTTTATCTTTGTTGTTTT 57.482 26.923 0.00 0.00 0.00 2.43
240 241 8.518430 AAAAATGGGCTTTATCTTTGTTGTTT 57.482 26.923 0.00 0.00 0.00 2.83
241 242 9.791801 ATAAAAATGGGCTTTATCTTTGTTGTT 57.208 25.926 0.00 0.00 0.00 2.83
242 243 9.435688 GATAAAAATGGGCTTTATCTTTGTTGT 57.564 29.630 8.79 0.00 40.37 3.32
243 244 9.657419 AGATAAAAATGGGCTTTATCTTTGTTG 57.343 29.630 11.57 0.00 46.62 3.33
244 245 9.657419 CAGATAAAAATGGGCTTTATCTTTGTT 57.343 29.630 13.69 0.00 46.62 2.83
245 246 8.815912 ACAGATAAAAATGGGCTTTATCTTTGT 58.184 29.630 13.69 9.70 46.62 2.83
246 247 9.090692 CACAGATAAAAATGGGCTTTATCTTTG 57.909 33.333 13.69 13.77 46.62 2.77
247 248 8.815912 ACACAGATAAAAATGGGCTTTATCTTT 58.184 29.630 13.69 7.78 46.62 2.52
248 249 8.366359 ACACAGATAAAAATGGGCTTTATCTT 57.634 30.769 13.69 6.40 46.62 2.40
255 256 9.646522 AGATAAATACACAGATAAAAATGGGCT 57.353 29.630 0.00 0.00 0.00 5.19
387 388 9.868277 TTTTCAGCGAAAATATTATTTCCACAT 57.132 25.926 10.89 0.00 36.73 3.21
388 389 9.698309 TTTTTCAGCGAAAATATTATTTCCACA 57.302 25.926 14.24 0.00 40.50 4.17
424 425 0.251077 AAAGGCCAAGCTCCACAGAG 60.251 55.000 5.01 0.00 43.57 3.35
425 426 0.538057 CAAAGGCCAAGCTCCACAGA 60.538 55.000 5.01 0.00 0.00 3.41
426 427 1.962144 CAAAGGCCAAGCTCCACAG 59.038 57.895 5.01 0.00 0.00 3.66
427 428 2.202395 GCAAAGGCCAAGCTCCACA 61.202 57.895 5.01 0.00 0.00 4.17
428 429 0.609131 TAGCAAAGGCCAAGCTCCAC 60.609 55.000 18.21 0.00 42.56 4.02
429 430 0.332632 ATAGCAAAGGCCAAGCTCCA 59.667 50.000 18.21 4.71 42.56 3.86
430 431 0.743097 CATAGCAAAGGCCAAGCTCC 59.257 55.000 18.21 0.00 42.56 4.70
431 432 0.101939 GCATAGCAAAGGCCAAGCTC 59.898 55.000 18.21 3.25 42.56 4.09
432 433 0.324091 AGCATAGCAAAGGCCAAGCT 60.324 50.000 18.60 18.60 42.56 3.74
433 434 0.533951 AAGCATAGCAAAGGCCAAGC 59.466 50.000 5.01 5.62 42.56 4.01
434 435 3.323751 AAAAGCATAGCAAAGGCCAAG 57.676 42.857 5.01 0.00 42.56 3.61
435 436 3.070734 TGAAAAAGCATAGCAAAGGCCAA 59.929 39.130 5.01 0.00 42.56 4.52
436 437 2.632028 TGAAAAAGCATAGCAAAGGCCA 59.368 40.909 5.01 0.00 42.56 5.36
437 438 3.317603 TGAAAAAGCATAGCAAAGGCC 57.682 42.857 0.00 0.00 42.56 5.19
438 439 4.497300 TCATGAAAAAGCATAGCAAAGGC 58.503 39.130 0.00 0.00 41.61 4.35
439 440 6.103997 ACATCATGAAAAAGCATAGCAAAGG 58.896 36.000 0.00 0.00 0.00 3.11
440 441 7.221452 GGTACATCATGAAAAAGCATAGCAAAG 59.779 37.037 0.00 0.00 0.00 2.77
441 442 7.035004 GGTACATCATGAAAAAGCATAGCAAA 58.965 34.615 0.00 0.00 0.00 3.68
442 443 6.405731 GGGTACATCATGAAAAAGCATAGCAA 60.406 38.462 0.00 0.00 0.00 3.91
443 444 5.067674 GGGTACATCATGAAAAAGCATAGCA 59.932 40.000 0.00 0.00 0.00 3.49
444 445 5.300286 AGGGTACATCATGAAAAAGCATAGC 59.700 40.000 0.00 0.00 0.00 2.97
445 446 6.016777 GGAGGGTACATCATGAAAAAGCATAG 60.017 42.308 0.00 0.00 0.00 2.23
446 447 5.827797 GGAGGGTACATCATGAAAAAGCATA 59.172 40.000 0.00 0.00 0.00 3.14
447 448 4.646492 GGAGGGTACATCATGAAAAAGCAT 59.354 41.667 0.00 0.00 0.00 3.79
448 449 4.016444 GGAGGGTACATCATGAAAAAGCA 58.984 43.478 0.00 0.00 0.00 3.91
449 450 3.381590 GGGAGGGTACATCATGAAAAAGC 59.618 47.826 0.00 0.00 0.00 3.51
450 451 4.860022 AGGGAGGGTACATCATGAAAAAG 58.140 43.478 0.00 0.00 0.00 2.27
451 452 4.946160 AGGGAGGGTACATCATGAAAAA 57.054 40.909 0.00 0.00 0.00 1.94
452 453 4.946160 AAGGGAGGGTACATCATGAAAA 57.054 40.909 0.00 0.00 0.00 2.29
453 454 4.946160 AAAGGGAGGGTACATCATGAAA 57.054 40.909 0.00 0.00 0.00 2.69
454 455 4.165372 GGTAAAGGGAGGGTACATCATGAA 59.835 45.833 0.00 0.00 0.00 2.57
455 456 3.714798 GGTAAAGGGAGGGTACATCATGA 59.285 47.826 0.00 0.00 0.00 3.07
456 457 3.494398 CGGTAAAGGGAGGGTACATCATG 60.494 52.174 0.00 0.00 0.00 3.07
457 458 2.704065 CGGTAAAGGGAGGGTACATCAT 59.296 50.000 0.00 0.00 0.00 2.45
458 459 2.112998 CGGTAAAGGGAGGGTACATCA 58.887 52.381 0.00 0.00 0.00 3.07
459 460 2.391678 TCGGTAAAGGGAGGGTACATC 58.608 52.381 0.00 0.00 0.00 3.06
460 461 2.555732 TCGGTAAAGGGAGGGTACAT 57.444 50.000 0.00 0.00 0.00 2.29
461 462 2.323999 TTCGGTAAAGGGAGGGTACA 57.676 50.000 0.00 0.00 0.00 2.90
462 463 3.701205 TTTTCGGTAAAGGGAGGGTAC 57.299 47.619 0.00 0.00 0.00 3.34
463 464 3.009363 CCTTTTTCGGTAAAGGGAGGGTA 59.991 47.826 16.75 0.00 46.81 3.69
464 465 2.224942 CCTTTTTCGGTAAAGGGAGGGT 60.225 50.000 16.75 0.00 46.81 4.34
465 466 2.443416 CCTTTTTCGGTAAAGGGAGGG 58.557 52.381 16.75 0.00 46.81 4.30
486 487 1.475280 GGAATACAAAGCGGGGGAAAC 59.525 52.381 0.00 0.00 0.00 2.78
487 488 1.075698 TGGAATACAAAGCGGGGGAAA 59.924 47.619 0.00 0.00 0.00 3.13
488 489 0.699399 TGGAATACAAAGCGGGGGAA 59.301 50.000 0.00 0.00 0.00 3.97
489 490 0.699399 TTGGAATACAAAGCGGGGGA 59.301 50.000 0.00 0.00 35.79 4.81
490 491 1.551452 TTTGGAATACAAAGCGGGGG 58.449 50.000 0.00 0.00 43.81 5.40
497 498 5.112686 GTGTTGGTTGCTTTGGAATACAAA 58.887 37.500 0.00 0.00 46.34 2.83
498 499 4.442192 GGTGTTGGTTGCTTTGGAATACAA 60.442 41.667 0.00 0.00 37.28 2.41
499 500 3.068873 GGTGTTGGTTGCTTTGGAATACA 59.931 43.478 0.00 0.00 0.00 2.29
500 501 3.649073 GGTGTTGGTTGCTTTGGAATAC 58.351 45.455 0.00 0.00 0.00 1.89
501 502 2.294791 CGGTGTTGGTTGCTTTGGAATA 59.705 45.455 0.00 0.00 0.00 1.75
502 503 1.068434 CGGTGTTGGTTGCTTTGGAAT 59.932 47.619 0.00 0.00 0.00 3.01
503 504 0.457851 CGGTGTTGGTTGCTTTGGAA 59.542 50.000 0.00 0.00 0.00 3.53
504 505 0.394488 TCGGTGTTGGTTGCTTTGGA 60.394 50.000 0.00 0.00 0.00 3.53
505 506 0.673437 ATCGGTGTTGGTTGCTTTGG 59.327 50.000 0.00 0.00 0.00 3.28
506 507 2.292016 TGTATCGGTGTTGGTTGCTTTG 59.708 45.455 0.00 0.00 0.00 2.77
507 508 2.577700 TGTATCGGTGTTGGTTGCTTT 58.422 42.857 0.00 0.00 0.00 3.51
508 509 2.264005 TGTATCGGTGTTGGTTGCTT 57.736 45.000 0.00 0.00 0.00 3.91
509 510 2.151202 CTTGTATCGGTGTTGGTTGCT 58.849 47.619 0.00 0.00 0.00 3.91
510 511 1.199097 CCTTGTATCGGTGTTGGTTGC 59.801 52.381 0.00 0.00 0.00 4.17
511 512 2.773487 TCCTTGTATCGGTGTTGGTTG 58.227 47.619 0.00 0.00 0.00 3.77
512 513 3.606687 GATCCTTGTATCGGTGTTGGTT 58.393 45.455 0.00 0.00 0.00 3.67
513 514 2.418197 CGATCCTTGTATCGGTGTTGGT 60.418 50.000 0.00 0.00 43.92 3.67
514 515 2.201732 CGATCCTTGTATCGGTGTTGG 58.798 52.381 0.00 0.00 43.92 3.77
522 523 1.141053 AGCCCCAACGATCCTTGTATC 59.859 52.381 0.00 0.00 0.00 2.24
523 524 1.213296 AGCCCCAACGATCCTTGTAT 58.787 50.000 0.00 0.00 0.00 2.29
524 525 1.760613 CTAGCCCCAACGATCCTTGTA 59.239 52.381 0.00 0.00 0.00 2.41
525 526 0.541863 CTAGCCCCAACGATCCTTGT 59.458 55.000 0.00 0.00 0.00 3.16
526 527 0.815615 GCTAGCCCCAACGATCCTTG 60.816 60.000 2.29 0.00 0.00 3.61
527 528 1.271840 TGCTAGCCCCAACGATCCTT 61.272 55.000 13.29 0.00 0.00 3.36
528 529 1.689233 TGCTAGCCCCAACGATCCT 60.689 57.895 13.29 0.00 0.00 3.24
529 530 1.227674 CTGCTAGCCCCAACGATCC 60.228 63.158 13.29 0.00 0.00 3.36
530 531 1.889573 GCTGCTAGCCCCAACGATC 60.890 63.158 13.29 0.00 34.48 3.69
531 532 2.190578 GCTGCTAGCCCCAACGAT 59.809 61.111 13.29 0.00 34.48 3.73
532 533 3.318384 TGCTGCTAGCCCCAACGA 61.318 61.111 13.29 0.00 41.51 3.85
533 534 3.127533 GTGCTGCTAGCCCCAACG 61.128 66.667 13.29 0.00 41.51 4.10
534 535 1.379044 ATGTGCTGCTAGCCCCAAC 60.379 57.895 13.29 6.14 41.51 3.77
535 536 1.077501 GATGTGCTGCTAGCCCCAA 60.078 57.895 13.29 0.00 41.51 4.12
536 537 2.261430 CTGATGTGCTGCTAGCCCCA 62.261 60.000 13.29 6.27 41.51 4.96
537 538 1.525535 CTGATGTGCTGCTAGCCCC 60.526 63.158 13.29 3.34 41.51 5.80
538 539 1.525535 CCTGATGTGCTGCTAGCCC 60.526 63.158 13.29 3.74 41.51 5.19
539 540 2.185494 GCCTGATGTGCTGCTAGCC 61.185 63.158 13.29 0.00 41.51 3.93
540 541 2.185494 GGCCTGATGTGCTGCTAGC 61.185 63.158 8.10 8.10 42.82 3.42
541 542 1.525535 GGGCCTGATGTGCTGCTAG 60.526 63.158 0.84 0.00 0.00 3.42
542 543 1.851065 TTGGGCCTGATGTGCTGCTA 61.851 55.000 4.53 0.00 0.00 3.49
543 544 2.718487 TTTGGGCCTGATGTGCTGCT 62.718 55.000 4.53 0.00 0.00 4.24
544 545 1.818959 TTTTGGGCCTGATGTGCTGC 61.819 55.000 4.53 0.00 0.00 5.25
545 546 0.245539 CTTTTGGGCCTGATGTGCTG 59.754 55.000 4.53 0.00 0.00 4.41
546 547 0.112995 TCTTTTGGGCCTGATGTGCT 59.887 50.000 4.53 0.00 0.00 4.40
547 548 0.968405 TTCTTTTGGGCCTGATGTGC 59.032 50.000 4.53 0.00 0.00 4.57
548 549 3.749665 TTTTCTTTTGGGCCTGATGTG 57.250 42.857 4.53 0.00 0.00 3.21
549 550 3.071457 CCTTTTTCTTTTGGGCCTGATGT 59.929 43.478 4.53 0.00 0.00 3.06
550 551 3.557686 CCCTTTTTCTTTTGGGCCTGATG 60.558 47.826 4.53 0.00 32.49 3.07
551 552 2.639347 CCCTTTTTCTTTTGGGCCTGAT 59.361 45.455 4.53 0.00 32.49 2.90
552 553 2.046292 CCCTTTTTCTTTTGGGCCTGA 58.954 47.619 4.53 0.00 32.49 3.86
553 554 1.768275 ACCCTTTTTCTTTTGGGCCTG 59.232 47.619 4.53 0.00 43.25 4.85
554 555 2.190398 ACCCTTTTTCTTTTGGGCCT 57.810 45.000 4.53 0.00 43.25 5.19
555 556 4.425180 TTAACCCTTTTTCTTTTGGGCC 57.575 40.909 0.00 0.00 43.25 5.80
556 557 7.335924 GGATAATTAACCCTTTTTCTTTTGGGC 59.664 37.037 0.24 0.00 43.25 5.36
557 558 8.602424 AGGATAATTAACCCTTTTTCTTTTGGG 58.398 33.333 8.09 0.00 44.89 4.12
591 592 0.957395 GAGCACATGGACACCACTGG 60.957 60.000 0.00 0.00 35.80 4.00
936 940 4.096003 GCTAGCTTCCCACCGCCA 62.096 66.667 7.70 0.00 0.00 5.69
1227 1231 1.200716 CATGTCACCTGCATGAACACC 59.799 52.381 0.00 0.00 44.60 4.16
1385 1389 2.010497 CTAGCTCTCTGTCAGTGCGTA 58.990 52.381 0.00 0.00 44.91 4.42
1503 1507 4.575885 ACATTACAACCAGTGCGATTACT 58.424 39.130 0.00 0.00 0.00 2.24
1608 1612 3.483869 GCTGGGGAGCCTCCGAAT 61.484 66.667 4.29 0.00 37.43 3.34
1621 1625 4.654091 TTTTGGAGTTTTGAGAAGCTGG 57.346 40.909 0.00 0.00 0.00 4.85
1640 1644 3.665190 CGAGGAGTAGAAGCTGGTTTTT 58.335 45.455 0.00 0.00 0.00 1.94
1655 1659 1.662438 AAGCGAGGAGAAGCGAGGAG 61.662 60.000 0.00 0.00 38.61 3.69
1656 1660 1.658686 GAAGCGAGGAGAAGCGAGGA 61.659 60.000 0.00 0.00 38.61 3.71
1657 1661 1.226831 GAAGCGAGGAGAAGCGAGG 60.227 63.158 0.00 0.00 38.61 4.63
1658 1662 1.002900 CTAGAAGCGAGGAGAAGCGAG 60.003 57.143 0.00 0.00 38.61 5.03
1659 1663 1.018148 CTAGAAGCGAGGAGAAGCGA 58.982 55.000 0.00 0.00 38.61 4.93
1660 1664 0.593773 GCTAGAAGCGAGGAGAAGCG 60.594 60.000 0.00 0.00 38.61 4.68
1661 1665 3.266282 GCTAGAAGCGAGGAGAAGC 57.734 57.895 0.00 0.00 0.00 3.86
1711 1715 2.699954 CAACGGGAGAAGCTACACATT 58.300 47.619 0.00 0.00 0.00 2.71
1717 1721 1.079127 GCAGCAACGGGAGAAGCTA 60.079 57.895 0.00 0.00 40.34 3.32
1760 1764 1.014352 GCCCAACATACGCCTAACAG 58.986 55.000 0.00 0.00 0.00 3.16
1783 1787 2.124901 TAATTGGGCCGCGTCCAG 60.125 61.111 9.08 0.00 39.05 3.86
1812 1816 0.649475 TACGCTAGTCTCGCTCGAAC 59.351 55.000 0.00 0.00 0.00 3.95
1822 1826 3.027710 CGATCGAAGTGTTACGCTAGTC 58.972 50.000 10.26 0.00 0.00 2.59
1834 1838 6.418226 CGAATAGAAAAAGGATCGATCGAAGT 59.582 38.462 23.50 6.38 32.38 3.01
1838 1842 5.164273 CGTCGAATAGAAAAAGGATCGATCG 60.164 44.000 18.81 9.36 40.80 3.69
1874 1878 1.193874 ACCGCTAAAGAAAACGCTTCG 59.806 47.619 0.00 0.00 0.00 3.79
1878 1882 0.728129 GCCACCGCTAAAGAAAACGC 60.728 55.000 0.00 0.00 0.00 4.84
1886 1890 2.322081 GCGAACTGCCACCGCTAAA 61.322 57.895 0.00 0.00 44.83 1.85
1932 1936 0.753111 GGCCCAGCTCCACCTAAATG 60.753 60.000 0.00 0.00 0.00 2.32
1933 1937 1.615262 GGCCCAGCTCCACCTAAAT 59.385 57.895 0.00 0.00 0.00 1.40
1955 1959 3.806316 AGTGTAAAAATCGGAAGCACG 57.194 42.857 0.00 0.00 0.00 5.34
1963 1967 4.353737 TCGATCCCGTAGTGTAAAAATCG 58.646 43.478 0.00 0.00 36.89 3.34
1964 1968 5.981315 TGATCGATCCCGTAGTGTAAAAATC 59.019 40.000 22.31 0.00 37.05 2.17
1982 1986 3.182182 CTGAATTCACGAAGCTGATCGA 58.818 45.455 14.48 0.00 45.48 3.59
2009 2013 1.122632 TCCAGAACGGTTGTAGCCCA 61.123 55.000 0.00 0.00 35.57 5.36
2015 2019 3.283751 TGAATTTGTCCAGAACGGTTGT 58.716 40.909 0.00 0.00 35.57 3.32
2038 2042 2.159310 CCACGCTTCCAAAACTTCACAA 60.159 45.455 0.00 0.00 0.00 3.33
2062 2066 2.618816 GGCATGTTCTGATGTCCTCCAA 60.619 50.000 0.00 0.00 0.00 3.53
2080 2084 5.364157 ACAACTTTAACCAACATTTAGGGCA 59.636 36.000 0.00 0.00 0.00 5.36
2124 2128 5.607119 TTAAATGTTGGTCGCTTCTTCTC 57.393 39.130 0.00 0.00 0.00 2.87
2183 2187 7.227910 AGCTGCATTTCATTGATCAAAAGTTTT 59.772 29.630 13.09 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.