Multiple sequence alignment - TraesCS3B01G086700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G086700 chr3B 100.000 4549 0 0 1 4549 54993484 54998032 0.000000e+00 8401.0
1 TraesCS3B01G086700 chr3B 93.393 1347 51 6 2162 3490 55092752 55091426 0.000000e+00 1960.0
2 TraesCS3B01G086700 chr3A 90.937 2306 129 37 2269 4540 44728878 44731137 0.000000e+00 3027.0
3 TraesCS3B01G086700 chr3A 93.803 1307 69 10 2269 3567 44765478 44764176 0.000000e+00 1954.0
4 TraesCS3B01G086700 chr3A 82.479 1444 142 52 679 2055 44767026 44765627 0.000000e+00 1162.0
5 TraesCS3B01G086700 chr3A 89.218 844 63 11 2379 3222 660435121 660435936 0.000000e+00 1029.0
6 TraesCS3B01G086700 chr3A 84.872 780 61 28 645 1380 44727185 44727951 0.000000e+00 734.0
7 TraesCS3B01G086700 chr3A 82.644 870 75 36 1384 2200 44727921 44728767 0.000000e+00 701.0
8 TraesCS3B01G086700 chr3A 85.484 434 44 11 956 1380 660433729 660434152 6.990000e-118 435.0
9 TraesCS3B01G086700 chr3A 94.915 118 5 1 1913 2030 140593822 140593706 2.800000e-42 183.0
10 TraesCS3B01G086700 chr3A 93.548 124 7 1 1907 2030 215626947 215627069 2.800000e-42 183.0
11 TraesCS3B01G086700 chr3A 93.684 95 6 0 3128 3222 660433726 660433632 4.740000e-30 143.0
12 TraesCS3B01G086700 chr3D 92.385 1602 82 18 2271 3855 32343896 32345474 0.000000e+00 2246.0
13 TraesCS3B01G086700 chr3D 94.401 1268 61 4 2227 3492 32420116 32418857 0.000000e+00 1940.0
14 TraesCS3B01G086700 chr3D 80.871 1699 160 76 400 2017 32341920 32343534 0.000000e+00 1184.0
15 TraesCS3B01G086700 chr3D 86.483 725 52 15 1377 2061 32421044 32420326 0.000000e+00 754.0
16 TraesCS3B01G086700 chr3D 88.026 618 24 20 687 1278 32421696 32421103 0.000000e+00 686.0
17 TraesCS3B01G086700 chr3D 76.863 255 44 13 4246 4494 547617090 547616845 3.690000e-26 130.0
18 TraesCS3B01G086700 chr3D 83.740 123 8 4 3740 3860 32418580 32418468 6.220000e-19 106.0
19 TraesCS3B01G086700 chr2A 95.763 118 4 1 1913 2030 30532304 30532188 6.010000e-44 189.0
20 TraesCS3B01G086700 chr2A 76.587 252 46 12 4257 4507 749101060 749101299 4.780000e-25 126.0
21 TraesCS3B01G086700 chr6A 94.915 118 5 1 1913 2030 118296925 118296809 2.800000e-42 183.0
22 TraesCS3B01G086700 chr6A 93.443 122 6 1 1913 2032 253427705 253427584 3.620000e-41 180.0
23 TraesCS3B01G086700 chr5A 88.276 145 17 0 3094 3238 437245147 437245291 1.680000e-39 174.0
24 TraesCS3B01G086700 chr5A 74.608 319 49 28 4242 4546 635467526 635467826 1.340000e-20 111.0
25 TraesCS3B01G086700 chr1A 87.234 141 18 0 3098 3238 110058755 110058615 1.310000e-35 161.0
26 TraesCS3B01G086700 chr7B 80.829 193 25 9 4302 4494 508349862 508349682 1.710000e-29 141.0
27 TraesCS3B01G086700 chr2D 77.186 263 47 11 4246 4507 618285356 618285606 1.710000e-29 141.0
28 TraesCS3B01G086700 chr2B 78.448 232 37 12 4266 4495 442071843 442071623 6.140000e-29 139.0
29 TraesCS3B01G086700 chr4D 77.143 245 46 9 4251 4493 498012182 498011946 2.860000e-27 134.0
30 TraesCS3B01G086700 chr6B 79.891 184 30 5 4312 4492 719989589 719989768 1.330000e-25 128.0
31 TraesCS3B01G086700 chr6B 74.903 259 55 9 4237 4493 676680212 676680462 4.810000e-20 110.0
32 TraesCS3B01G086700 chr6D 95.349 43 2 0 2614 2656 194855384 194855342 8.170000e-08 69.4
33 TraesCS3B01G086700 chr1D 84.127 63 4 3 355 411 461034458 461034520 6.360000e-04 56.5
34 TraesCS3B01G086700 chr1B 100.000 29 0 0 355 383 585543908 585543936 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G086700 chr3B 54993484 54998032 4548 False 8401.000000 8401 100.0000 1 4549 1 chr3B.!!$F1 4548
1 TraesCS3B01G086700 chr3B 55091426 55092752 1326 True 1960.000000 1960 93.3930 2162 3490 1 chr3B.!!$R1 1328
2 TraesCS3B01G086700 chr3A 44764176 44767026 2850 True 1558.000000 1954 88.1410 679 3567 2 chr3A.!!$R3 2888
3 TraesCS3B01G086700 chr3A 44727185 44731137 3952 False 1487.333333 3027 86.1510 645 4540 3 chr3A.!!$F2 3895
4 TraesCS3B01G086700 chr3A 660433729 660435936 2207 False 732.000000 1029 87.3510 956 3222 2 chr3A.!!$F3 2266
5 TraesCS3B01G086700 chr3D 32341920 32345474 3554 False 1715.000000 2246 86.6280 400 3855 2 chr3D.!!$F1 3455
6 TraesCS3B01G086700 chr3D 32418468 32421696 3228 True 871.500000 1940 88.1625 687 3860 4 chr3D.!!$R2 3173

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 526 0.037326 AGTGGGAGCATGTACACACG 60.037 55.0 16.47 0.0 44.01 4.49 F
1297 1366 0.179097 CCTCCTCCTCTTTACTGCGC 60.179 60.0 0.00 0.0 0.00 6.09 F
1752 1883 0.388263 GGACGAGTGAGACGAAACCC 60.388 60.0 0.00 0.0 34.70 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 1758 0.386838 GCTGCTGCAAGTGAAAAGGT 59.613 50.0 11.11 0.0 39.41 3.50 R
2543 2965 0.241481 GGAACTCAAGCGTCTCGAGT 59.759 55.0 13.13 0.0 41.70 4.18 R
3669 4124 0.458889 GACAGAGCAGAGCAGAGCAG 60.459 60.0 0.00 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.762745 AGTACAAATGTCACGACCACC 58.237 47.619 0.00 0.00 0.00 4.61
21 22 1.802365 GTACAAATGTCACGACCACCC 59.198 52.381 0.00 0.00 0.00 4.61
22 23 0.181587 ACAAATGTCACGACCACCCA 59.818 50.000 0.00 0.00 0.00 4.51
23 24 1.202879 ACAAATGTCACGACCACCCAT 60.203 47.619 0.00 0.00 0.00 4.00
24 25 1.885887 CAAATGTCACGACCACCCATT 59.114 47.619 0.00 0.00 0.00 3.16
25 26 2.286365 AATGTCACGACCACCCATTT 57.714 45.000 0.00 0.00 0.00 2.32
26 27 2.286365 ATGTCACGACCACCCATTTT 57.714 45.000 0.00 0.00 0.00 1.82
27 28 1.600023 TGTCACGACCACCCATTTTC 58.400 50.000 0.00 0.00 0.00 2.29
28 29 0.515564 GTCACGACCACCCATTTTCG 59.484 55.000 0.00 0.00 37.50 3.46
29 30 0.107081 TCACGACCACCCATTTTCGT 59.893 50.000 0.00 0.00 45.24 3.85
30 31 2.624169 ACGACCACCCATTTTCGTG 58.376 52.632 0.00 0.00 42.84 4.35
31 32 0.179040 ACGACCACCCATTTTCGTGT 60.179 50.000 0.00 0.00 42.84 4.49
32 33 0.237235 CGACCACCCATTTTCGTGTG 59.763 55.000 0.00 0.00 0.00 3.82
33 34 0.039527 GACCACCCATTTTCGTGTGC 60.040 55.000 0.00 0.00 0.00 4.57
34 35 0.753479 ACCACCCATTTTCGTGTGCA 60.753 50.000 0.00 0.00 0.00 4.57
35 36 0.602562 CCACCCATTTTCGTGTGCAT 59.397 50.000 0.00 0.00 0.00 3.96
36 37 1.815613 CCACCCATTTTCGTGTGCATA 59.184 47.619 0.00 0.00 0.00 3.14
37 38 2.415357 CCACCCATTTTCGTGTGCATAC 60.415 50.000 3.05 3.05 0.00 2.39
38 39 1.466950 ACCCATTTTCGTGTGCATACG 59.533 47.619 27.64 27.64 44.98 3.06
79 80 7.765695 AGATATGGTGAATTTGTGTTTGAGT 57.234 32.000 0.00 0.00 0.00 3.41
80 81 8.862325 AGATATGGTGAATTTGTGTTTGAGTA 57.138 30.769 0.00 0.00 0.00 2.59
81 82 9.466497 AGATATGGTGAATTTGTGTTTGAGTAT 57.534 29.630 0.00 0.00 0.00 2.12
85 86 7.653647 TGGTGAATTTGTGTTTGAGTATAACC 58.346 34.615 0.00 0.00 0.00 2.85
86 87 7.088272 GGTGAATTTGTGTTTGAGTATAACCC 58.912 38.462 0.00 0.00 0.00 4.11
87 88 7.088272 GTGAATTTGTGTTTGAGTATAACCCC 58.912 38.462 0.00 0.00 0.00 4.95
88 89 6.778069 TGAATTTGTGTTTGAGTATAACCCCA 59.222 34.615 0.00 0.00 0.00 4.96
89 90 6.584185 ATTTGTGTTTGAGTATAACCCCAC 57.416 37.500 0.00 0.00 0.00 4.61
90 91 4.986054 TGTGTTTGAGTATAACCCCACT 57.014 40.909 0.00 0.00 0.00 4.00
91 92 6.436738 TTGTGTTTGAGTATAACCCCACTA 57.563 37.500 0.00 0.00 0.00 2.74
92 93 6.630203 TGTGTTTGAGTATAACCCCACTAT 57.370 37.500 0.00 0.00 0.00 2.12
93 94 7.023171 TGTGTTTGAGTATAACCCCACTATT 57.977 36.000 0.00 0.00 0.00 1.73
94 95 7.463431 TGTGTTTGAGTATAACCCCACTATTT 58.537 34.615 0.00 0.00 0.00 1.40
95 96 7.392113 TGTGTTTGAGTATAACCCCACTATTTG 59.608 37.037 0.00 0.00 0.00 2.32
96 97 6.887545 TGTTTGAGTATAACCCCACTATTTGG 59.112 38.462 0.00 0.00 46.47 3.28
97 98 6.645884 TTGAGTATAACCCCACTATTTGGT 57.354 37.500 0.00 0.00 45.25 3.67
98 99 6.243216 TGAGTATAACCCCACTATTTGGTC 57.757 41.667 0.00 0.00 45.25 4.02
99 100 5.727279 TGAGTATAACCCCACTATTTGGTCA 59.273 40.000 0.00 0.00 45.25 4.02
100 101 6.388689 TGAGTATAACCCCACTATTTGGTCAT 59.611 38.462 0.00 0.00 45.25 3.06
101 102 7.092174 TGAGTATAACCCCACTATTTGGTCATT 60.092 37.037 0.00 0.00 45.25 2.57
102 103 7.648770 AGTATAACCCCACTATTTGGTCATTT 58.351 34.615 0.00 0.00 45.25 2.32
103 104 6.790232 ATAACCCCACTATTTGGTCATTTG 57.210 37.500 0.00 0.00 45.25 2.32
104 105 4.126520 ACCCCACTATTTGGTCATTTGT 57.873 40.909 0.00 0.00 45.25 2.83
105 106 5.263872 ACCCCACTATTTGGTCATTTGTA 57.736 39.130 0.00 0.00 45.25 2.41
106 107 5.837829 ACCCCACTATTTGGTCATTTGTAT 58.162 37.500 0.00 0.00 45.25 2.29
107 108 6.260663 ACCCCACTATTTGGTCATTTGTATT 58.739 36.000 0.00 0.00 45.25 1.89
108 109 6.379988 ACCCCACTATTTGGTCATTTGTATTC 59.620 38.462 0.00 0.00 45.25 1.75
109 110 6.607198 CCCCACTATTTGGTCATTTGTATTCT 59.393 38.462 0.00 0.00 45.25 2.40
110 111 7.201821 CCCCACTATTTGGTCATTTGTATTCTC 60.202 40.741 0.00 0.00 45.25 2.87
111 112 7.339212 CCCACTATTTGGTCATTTGTATTCTCA 59.661 37.037 0.00 0.00 45.25 3.27
112 113 8.739039 CCACTATTTGGTCATTTGTATTCTCAA 58.261 33.333 0.00 0.00 41.10 3.02
113 114 9.778993 CACTATTTGGTCATTTGTATTCTCAAG 57.221 33.333 0.00 0.00 0.00 3.02
114 115 8.960591 ACTATTTGGTCATTTGTATTCTCAAGG 58.039 33.333 0.00 0.00 0.00 3.61
115 116 5.643379 TTGGTCATTTGTATTCTCAAGGC 57.357 39.130 0.00 0.00 0.00 4.35
116 117 4.661222 TGGTCATTTGTATTCTCAAGGCA 58.339 39.130 0.00 0.00 0.00 4.75
117 118 5.263599 TGGTCATTTGTATTCTCAAGGCAT 58.736 37.500 0.00 0.00 0.00 4.40
118 119 5.125900 TGGTCATTTGTATTCTCAAGGCATG 59.874 40.000 0.00 0.00 0.00 4.06
119 120 5.450965 GGTCATTTGTATTCTCAAGGCATGG 60.451 44.000 0.00 0.00 0.00 3.66
120 121 5.357878 GTCATTTGTATTCTCAAGGCATGGA 59.642 40.000 0.00 0.00 0.00 3.41
121 122 5.951148 TCATTTGTATTCTCAAGGCATGGAA 59.049 36.000 0.00 0.00 0.00 3.53
122 123 6.436847 TCATTTGTATTCTCAAGGCATGGAAA 59.563 34.615 0.00 0.00 0.00 3.13
123 124 6.662865 TTTGTATTCTCAAGGCATGGAAAA 57.337 33.333 0.00 0.00 0.00 2.29
124 125 6.855763 TTGTATTCTCAAGGCATGGAAAAT 57.144 33.333 0.00 0.00 0.00 1.82
125 126 6.855763 TGTATTCTCAAGGCATGGAAAATT 57.144 33.333 0.00 0.00 0.00 1.82
126 127 7.953005 TGTATTCTCAAGGCATGGAAAATTA 57.047 32.000 0.00 0.00 0.00 1.40
127 128 8.537728 TGTATTCTCAAGGCATGGAAAATTAT 57.462 30.769 0.00 0.00 0.00 1.28
128 129 8.980596 TGTATTCTCAAGGCATGGAAAATTATT 58.019 29.630 0.00 0.00 0.00 1.40
129 130 9.822185 GTATTCTCAAGGCATGGAAAATTATTT 57.178 29.630 0.00 0.00 0.00 1.40
131 132 9.743581 ATTCTCAAGGCATGGAAAATTATTTTT 57.256 25.926 4.32 0.00 37.75 1.94
132 133 8.550710 TCTCAAGGCATGGAAAATTATTTTTG 57.449 30.769 4.32 0.92 35.20 2.44
133 134 7.119553 TCTCAAGGCATGGAAAATTATTTTTGC 59.880 33.333 13.90 13.90 41.86 3.68
134 135 6.941436 TCAAGGCATGGAAAATTATTTTTGCT 59.059 30.769 18.77 7.89 41.98 3.91
135 136 6.990341 AGGCATGGAAAATTATTTTTGCTC 57.010 33.333 18.77 12.21 41.98 4.26
136 137 6.474630 AGGCATGGAAAATTATTTTTGCTCA 58.525 32.000 18.77 10.35 41.98 4.26
137 138 6.941436 AGGCATGGAAAATTATTTTTGCTCAA 59.059 30.769 18.77 0.00 41.98 3.02
138 139 7.120138 AGGCATGGAAAATTATTTTTGCTCAAG 59.880 33.333 18.77 8.85 41.98 3.02
139 140 7.245604 GCATGGAAAATTATTTTTGCTCAAGG 58.754 34.615 14.61 0.00 41.98 3.61
140 141 6.799926 TGGAAAATTATTTTTGCTCAAGGC 57.200 33.333 13.27 0.00 41.98 4.35
141 142 6.532826 TGGAAAATTATTTTTGCTCAAGGCT 58.467 32.000 13.27 0.00 41.98 4.58
142 143 7.675062 TGGAAAATTATTTTTGCTCAAGGCTA 58.325 30.769 13.27 0.00 41.98 3.93
143 144 8.320617 TGGAAAATTATTTTTGCTCAAGGCTAT 58.679 29.630 13.27 0.00 41.98 2.97
144 145 9.166173 GGAAAATTATTTTTGCTCAAGGCTATT 57.834 29.630 4.32 0.00 39.34 1.73
147 148 8.496707 AATTATTTTTGCTCAAGGCTATTTGG 57.503 30.769 0.00 0.00 42.39 3.28
148 149 4.953940 TTTTTGCTCAAGGCTATTTGGT 57.046 36.364 0.00 0.00 42.39 3.67
149 150 4.519540 TTTTGCTCAAGGCTATTTGGTC 57.480 40.909 0.00 0.00 42.39 4.02
150 151 2.877097 TGCTCAAGGCTATTTGGTCA 57.123 45.000 0.00 0.00 42.39 4.02
151 152 3.370840 TGCTCAAGGCTATTTGGTCAT 57.629 42.857 0.00 0.00 42.39 3.06
152 153 3.700538 TGCTCAAGGCTATTTGGTCATT 58.299 40.909 0.00 0.00 42.39 2.57
153 154 4.088634 TGCTCAAGGCTATTTGGTCATTT 58.911 39.130 0.00 0.00 42.39 2.32
154 155 4.527816 TGCTCAAGGCTATTTGGTCATTTT 59.472 37.500 0.00 0.00 42.39 1.82
155 156 5.105063 GCTCAAGGCTATTTGGTCATTTTC 58.895 41.667 0.00 0.00 38.06 2.29
156 157 5.309323 TCAAGGCTATTTGGTCATTTTCG 57.691 39.130 0.00 0.00 0.00 3.46
157 158 4.764823 TCAAGGCTATTTGGTCATTTTCGT 59.235 37.500 0.00 0.00 0.00 3.85
158 159 4.701956 AGGCTATTTGGTCATTTTCGTG 57.298 40.909 0.00 0.00 0.00 4.35
159 160 4.331968 AGGCTATTTGGTCATTTTCGTGA 58.668 39.130 0.00 0.00 0.00 4.35
160 161 4.949856 AGGCTATTTGGTCATTTTCGTGAT 59.050 37.500 0.00 0.00 0.00 3.06
161 162 6.119536 AGGCTATTTGGTCATTTTCGTGATA 58.880 36.000 0.00 0.00 0.00 2.15
162 163 6.601613 AGGCTATTTGGTCATTTTCGTGATAA 59.398 34.615 0.00 0.00 0.00 1.75
163 164 7.285401 AGGCTATTTGGTCATTTTCGTGATAAT 59.715 33.333 0.00 0.00 0.00 1.28
164 165 7.920682 GGCTATTTGGTCATTTTCGTGATAATT 59.079 33.333 0.00 0.00 0.00 1.40
165 166 9.301153 GCTATTTGGTCATTTTCGTGATAATTT 57.699 29.630 0.00 0.00 0.00 1.82
169 170 9.534565 TTTGGTCATTTTCGTGATAATTTTTCA 57.465 25.926 0.00 0.00 0.00 2.69
170 171 9.534565 TTGGTCATTTTCGTGATAATTTTTCAA 57.465 25.926 0.00 0.00 0.00 2.69
171 172 8.973378 TGGTCATTTTCGTGATAATTTTTCAAC 58.027 29.630 0.00 0.00 0.00 3.18
172 173 9.191995 GGTCATTTTCGTGATAATTTTTCAACT 57.808 29.630 0.00 0.00 0.00 3.16
204 205 2.859165 TTTTACCCAGCTGAGACAGG 57.141 50.000 17.39 10.04 31.21 4.00
205 206 0.984230 TTTACCCAGCTGAGACAGGG 59.016 55.000 17.39 9.42 46.96 4.45
206 207 0.909610 TTACCCAGCTGAGACAGGGG 60.910 60.000 17.39 8.57 45.83 4.79
207 208 1.811025 TACCCAGCTGAGACAGGGGA 61.811 60.000 17.39 0.00 45.83 4.81
208 209 2.664081 CCCAGCTGAGACAGGGGAC 61.664 68.421 17.39 0.00 35.76 4.46
209 210 2.575993 CAGCTGAGACAGGGGACG 59.424 66.667 8.42 0.00 31.21 4.79
210 211 1.979155 CAGCTGAGACAGGGGACGA 60.979 63.158 8.42 0.00 31.21 4.20
211 212 1.680651 AGCTGAGACAGGGGACGAG 60.681 63.158 0.00 0.00 31.21 4.18
212 213 1.679305 GCTGAGACAGGGGACGAGA 60.679 63.158 0.00 0.00 31.21 4.04
213 214 1.662438 GCTGAGACAGGGGACGAGAG 61.662 65.000 0.00 0.00 31.21 3.20
214 215 1.662438 CTGAGACAGGGGACGAGAGC 61.662 65.000 0.00 0.00 0.00 4.09
215 216 1.679305 GAGACAGGGGACGAGAGCA 60.679 63.158 0.00 0.00 0.00 4.26
216 217 1.662438 GAGACAGGGGACGAGAGCAG 61.662 65.000 0.00 0.00 0.00 4.24
217 218 3.363844 GACAGGGGACGAGAGCAGC 62.364 68.421 0.00 0.00 0.00 5.25
218 219 3.385384 CAGGGGACGAGAGCAGCA 61.385 66.667 0.00 0.00 0.00 4.41
219 220 2.604686 AGGGGACGAGAGCAGCAA 60.605 61.111 0.00 0.00 0.00 3.91
220 221 2.125350 GGGGACGAGAGCAGCAAG 60.125 66.667 0.00 0.00 0.00 4.01
221 222 2.659610 GGGACGAGAGCAGCAAGT 59.340 61.111 0.00 0.00 0.00 3.16
222 223 1.004440 GGGACGAGAGCAGCAAGTT 60.004 57.895 0.00 0.00 0.00 2.66
223 224 0.603975 GGGACGAGAGCAGCAAGTTT 60.604 55.000 0.00 0.00 0.00 2.66
224 225 1.337823 GGGACGAGAGCAGCAAGTTTA 60.338 52.381 0.00 0.00 0.00 2.01
225 226 2.413837 GGACGAGAGCAGCAAGTTTAA 58.586 47.619 0.00 0.00 0.00 1.52
226 227 2.413453 GGACGAGAGCAGCAAGTTTAAG 59.587 50.000 0.00 0.00 0.00 1.85
227 228 3.060602 GACGAGAGCAGCAAGTTTAAGT 58.939 45.455 0.00 0.00 0.00 2.24
228 229 4.235360 GACGAGAGCAGCAAGTTTAAGTA 58.765 43.478 0.00 0.00 0.00 2.24
229 230 3.988517 ACGAGAGCAGCAAGTTTAAGTAC 59.011 43.478 0.00 0.00 0.00 2.73
230 231 3.059570 CGAGAGCAGCAAGTTTAAGTACG 59.940 47.826 0.00 0.00 0.00 3.67
231 232 4.235360 GAGAGCAGCAAGTTTAAGTACGA 58.765 43.478 0.00 0.00 0.00 3.43
232 233 4.238514 AGAGCAGCAAGTTTAAGTACGAG 58.761 43.478 0.00 0.00 0.00 4.18
233 234 4.022242 AGAGCAGCAAGTTTAAGTACGAGA 60.022 41.667 0.00 0.00 0.00 4.04
234 235 4.238514 AGCAGCAAGTTTAAGTACGAGAG 58.761 43.478 0.00 0.00 0.00 3.20
235 236 3.368236 GCAGCAAGTTTAAGTACGAGAGG 59.632 47.826 0.00 0.00 0.00 3.69
236 237 4.806330 CAGCAAGTTTAAGTACGAGAGGA 58.194 43.478 0.00 0.00 0.00 3.71
237 238 5.227908 CAGCAAGTTTAAGTACGAGAGGAA 58.772 41.667 0.00 0.00 0.00 3.36
238 239 5.694910 CAGCAAGTTTAAGTACGAGAGGAAA 59.305 40.000 0.00 0.00 0.00 3.13
239 240 5.927115 AGCAAGTTTAAGTACGAGAGGAAAG 59.073 40.000 0.00 0.00 0.00 2.62
240 241 5.120363 GCAAGTTTAAGTACGAGAGGAAAGG 59.880 44.000 0.00 0.00 0.00 3.11
241 242 5.402997 AGTTTAAGTACGAGAGGAAAGGG 57.597 43.478 0.00 0.00 0.00 3.95
242 243 4.222366 AGTTTAAGTACGAGAGGAAAGGGG 59.778 45.833 0.00 0.00 0.00 4.79
243 244 1.569653 AAGTACGAGAGGAAAGGGGG 58.430 55.000 0.00 0.00 0.00 5.40
244 245 0.412640 AGTACGAGAGGAAAGGGGGT 59.587 55.000 0.00 0.00 0.00 4.95
245 246 1.203275 AGTACGAGAGGAAAGGGGGTT 60.203 52.381 0.00 0.00 0.00 4.11
246 247 1.206610 GTACGAGAGGAAAGGGGGTTC 59.793 57.143 0.00 0.00 0.00 3.62
247 248 1.218316 CGAGAGGAAAGGGGGTTCG 59.782 63.158 0.00 0.00 0.00 3.95
248 249 1.078356 GAGAGGAAAGGGGGTTCGC 60.078 63.158 0.00 0.00 0.00 4.70
249 250 1.539124 AGAGGAAAGGGGGTTCGCT 60.539 57.895 0.00 0.00 37.82 4.93
250 251 1.134438 AGAGGAAAGGGGGTTCGCTT 61.134 55.000 0.00 0.00 46.26 4.68
251 252 0.960861 GAGGAAAGGGGGTTCGCTTG 60.961 60.000 0.00 0.00 44.00 4.01
252 253 2.636412 GGAAAGGGGGTTCGCTTGC 61.636 63.158 0.00 0.00 44.00 4.01
253 254 1.901464 GAAAGGGGGTTCGCTTGCA 60.901 57.895 0.00 0.00 44.00 4.08
254 255 1.866853 GAAAGGGGGTTCGCTTGCAG 61.867 60.000 0.00 0.00 44.00 4.41
255 256 3.868200 AAGGGGGTTCGCTTGCAGG 62.868 63.158 0.00 0.00 43.29 4.85
260 261 3.435186 GTTCGCTTGCAGGGGCTC 61.435 66.667 8.11 0.17 41.91 4.70
261 262 3.640407 TTCGCTTGCAGGGGCTCT 61.640 61.111 8.11 0.00 41.91 4.09
262 263 3.196207 TTCGCTTGCAGGGGCTCTT 62.196 57.895 8.11 0.00 41.91 2.85
263 264 2.674380 CGCTTGCAGGGGCTCTTT 60.674 61.111 0.00 0.00 41.91 2.52
264 265 2.694760 CGCTTGCAGGGGCTCTTTC 61.695 63.158 0.00 0.00 41.91 2.62
265 266 2.346541 GCTTGCAGGGGCTCTTTCC 61.347 63.158 0.00 0.00 41.91 3.13
266 267 2.034066 TTGCAGGGGCTCTTTCCG 59.966 61.111 0.00 0.00 41.91 4.30
267 268 2.469465 CTTGCAGGGGCTCTTTCCGA 62.469 60.000 0.00 0.00 41.91 4.55
268 269 2.436824 GCAGGGGCTCTTTCCGAC 60.437 66.667 0.00 0.00 36.96 4.79
269 270 2.125512 CAGGGGCTCTTTCCGACG 60.126 66.667 0.00 0.00 0.00 5.12
270 271 2.283676 AGGGGCTCTTTCCGACGA 60.284 61.111 0.00 0.00 0.00 4.20
271 272 1.911766 AGGGGCTCTTTCCGACGAA 60.912 57.895 0.00 0.00 0.00 3.85
272 273 1.740664 GGGGCTCTTTCCGACGAAC 60.741 63.158 0.00 0.00 0.00 3.95
273 274 1.740664 GGGCTCTTTCCGACGAACC 60.741 63.158 0.00 0.00 0.00 3.62
274 275 1.292541 GGCTCTTTCCGACGAACCT 59.707 57.895 0.00 0.00 0.00 3.50
275 276 0.320508 GGCTCTTTCCGACGAACCTT 60.321 55.000 0.00 0.00 0.00 3.50
276 277 1.069255 GCTCTTTCCGACGAACCTTC 58.931 55.000 0.00 0.00 0.00 3.46
277 278 1.604693 GCTCTTTCCGACGAACCTTCA 60.605 52.381 0.00 0.00 0.00 3.02
278 279 2.059541 CTCTTTCCGACGAACCTTCAC 58.940 52.381 0.00 0.00 0.00 3.18
279 280 1.684983 TCTTTCCGACGAACCTTCACT 59.315 47.619 0.00 0.00 0.00 3.41
280 281 2.059541 CTTTCCGACGAACCTTCACTC 58.940 52.381 0.00 0.00 0.00 3.51
281 282 0.039798 TTCCGACGAACCTTCACTCG 60.040 55.000 0.00 0.00 40.87 4.18
282 283 0.886043 TCCGACGAACCTTCACTCGA 60.886 55.000 0.00 0.00 38.43 4.04
283 284 0.170561 CCGACGAACCTTCACTCGAT 59.829 55.000 0.00 0.00 38.43 3.59
284 285 1.536149 CGACGAACCTTCACTCGATC 58.464 55.000 0.00 0.00 38.43 3.69
285 286 1.135774 CGACGAACCTTCACTCGATCA 60.136 52.381 0.00 0.00 38.43 2.92
286 287 2.667448 CGACGAACCTTCACTCGATCAA 60.667 50.000 0.00 0.00 38.43 2.57
287 288 2.662156 GACGAACCTTCACTCGATCAAC 59.338 50.000 0.00 0.00 38.43 3.18
288 289 1.993370 CGAACCTTCACTCGATCAACC 59.007 52.381 0.00 0.00 37.23 3.77
289 290 2.347731 GAACCTTCACTCGATCAACCC 58.652 52.381 0.00 0.00 0.00 4.11
290 291 0.613777 ACCTTCACTCGATCAACCCC 59.386 55.000 0.00 0.00 0.00 4.95
291 292 0.107654 CCTTCACTCGATCAACCCCC 60.108 60.000 0.00 0.00 0.00 5.40
313 314 3.790152 GGGAACGATTAGTTAGGACGT 57.210 47.619 0.00 0.00 44.35 4.34
314 315 3.442100 GGGAACGATTAGTTAGGACGTG 58.558 50.000 0.00 0.00 44.35 4.49
315 316 2.856557 GGAACGATTAGTTAGGACGTGC 59.143 50.000 0.00 0.00 44.35 5.34
316 317 2.573941 ACGATTAGTTAGGACGTGCC 57.426 50.000 2.38 0.00 35.91 5.01
325 326 4.008933 GGACGTGCCTGCTCCTGT 62.009 66.667 0.00 0.00 0.00 4.00
326 327 2.433318 GACGTGCCTGCTCCTGTC 60.433 66.667 0.00 0.00 0.00 3.51
327 328 3.226429 GACGTGCCTGCTCCTGTCA 62.226 63.158 0.00 0.00 0.00 3.58
328 329 2.267006 CGTGCCTGCTCCTGTCAT 59.733 61.111 0.00 0.00 0.00 3.06
329 330 1.376424 CGTGCCTGCTCCTGTCATT 60.376 57.895 0.00 0.00 0.00 2.57
330 331 0.108186 CGTGCCTGCTCCTGTCATTA 60.108 55.000 0.00 0.00 0.00 1.90
331 332 1.661341 GTGCCTGCTCCTGTCATTAG 58.339 55.000 0.00 0.00 0.00 1.73
332 333 0.543277 TGCCTGCTCCTGTCATTAGG 59.457 55.000 0.00 0.00 39.29 2.69
333 334 0.179034 GCCTGCTCCTGTCATTAGGG 60.179 60.000 0.00 0.00 38.42 3.53
334 335 1.207791 CCTGCTCCTGTCATTAGGGT 58.792 55.000 0.00 0.00 38.42 4.34
335 336 1.139853 CCTGCTCCTGTCATTAGGGTC 59.860 57.143 0.00 0.00 38.42 4.46
336 337 1.139853 CTGCTCCTGTCATTAGGGTCC 59.860 57.143 0.00 0.00 38.42 4.46
337 338 1.273838 TGCTCCTGTCATTAGGGTCCT 60.274 52.381 0.00 0.00 38.42 3.85
338 339 1.840635 GCTCCTGTCATTAGGGTCCTT 59.159 52.381 0.00 0.00 38.42 3.36
339 340 2.420687 GCTCCTGTCATTAGGGTCCTTG 60.421 54.545 0.00 0.00 38.42 3.61
340 341 2.840651 CTCCTGTCATTAGGGTCCTTGT 59.159 50.000 0.00 0.00 38.42 3.16
341 342 3.256704 TCCTGTCATTAGGGTCCTTGTT 58.743 45.455 0.00 0.00 38.42 2.83
342 343 3.655777 TCCTGTCATTAGGGTCCTTGTTT 59.344 43.478 0.00 0.00 38.42 2.83
343 344 4.105697 TCCTGTCATTAGGGTCCTTGTTTT 59.894 41.667 0.00 0.00 38.42 2.43
344 345 4.832823 CCTGTCATTAGGGTCCTTGTTTTT 59.167 41.667 0.00 0.00 34.06 1.94
345 346 5.048013 CCTGTCATTAGGGTCCTTGTTTTTC 60.048 44.000 0.00 0.00 34.06 2.29
346 347 5.701224 TGTCATTAGGGTCCTTGTTTTTCT 58.299 37.500 0.00 0.00 0.00 2.52
347 348 5.534654 TGTCATTAGGGTCCTTGTTTTTCTG 59.465 40.000 0.00 0.00 0.00 3.02
348 349 4.522789 TCATTAGGGTCCTTGTTTTTCTGC 59.477 41.667 0.00 0.00 0.00 4.26
349 350 1.704641 AGGGTCCTTGTTTTTCTGCC 58.295 50.000 0.00 0.00 0.00 4.85
350 351 1.217942 AGGGTCCTTGTTTTTCTGCCT 59.782 47.619 0.00 0.00 0.00 4.75
351 352 2.039418 GGGTCCTTGTTTTTCTGCCTT 58.961 47.619 0.00 0.00 0.00 4.35
352 353 2.224042 GGGTCCTTGTTTTTCTGCCTTG 60.224 50.000 0.00 0.00 0.00 3.61
353 354 2.430694 GGTCCTTGTTTTTCTGCCTTGT 59.569 45.455 0.00 0.00 0.00 3.16
354 355 3.118775 GGTCCTTGTTTTTCTGCCTTGTT 60.119 43.478 0.00 0.00 0.00 2.83
355 356 4.098807 GGTCCTTGTTTTTCTGCCTTGTTA 59.901 41.667 0.00 0.00 0.00 2.41
356 357 5.041287 GTCCTTGTTTTTCTGCCTTGTTAC 58.959 41.667 0.00 0.00 0.00 2.50
357 358 4.953579 TCCTTGTTTTTCTGCCTTGTTACT 59.046 37.500 0.00 0.00 0.00 2.24
358 359 5.067283 TCCTTGTTTTTCTGCCTTGTTACTC 59.933 40.000 0.00 0.00 0.00 2.59
359 360 4.911514 TGTTTTTCTGCCTTGTTACTCC 57.088 40.909 0.00 0.00 0.00 3.85
360 361 4.274147 TGTTTTTCTGCCTTGTTACTCCA 58.726 39.130 0.00 0.00 0.00 3.86
361 362 4.892934 TGTTTTTCTGCCTTGTTACTCCAT 59.107 37.500 0.00 0.00 0.00 3.41
362 363 5.009610 TGTTTTTCTGCCTTGTTACTCCATC 59.990 40.000 0.00 0.00 0.00 3.51
363 364 3.350219 TTCTGCCTTGTTACTCCATCC 57.650 47.619 0.00 0.00 0.00 3.51
364 365 1.207089 TCTGCCTTGTTACTCCATCCG 59.793 52.381 0.00 0.00 0.00 4.18
365 366 0.981183 TGCCTTGTTACTCCATCCGT 59.019 50.000 0.00 0.00 0.00 4.69
366 367 1.066430 TGCCTTGTTACTCCATCCGTC 60.066 52.381 0.00 0.00 0.00 4.79
367 368 1.742750 GCCTTGTTACTCCATCCGTCC 60.743 57.143 0.00 0.00 0.00 4.79
368 369 1.134491 CCTTGTTACTCCATCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
369 370 0.533491 TTGTTACTCCATCCGTCCCG 59.467 55.000 0.00 0.00 0.00 5.14
370 371 0.323633 TGTTACTCCATCCGTCCCGA 60.324 55.000 0.00 0.00 0.00 5.14
371 372 0.819582 GTTACTCCATCCGTCCCGAA 59.180 55.000 0.00 0.00 0.00 4.30
372 373 1.411612 GTTACTCCATCCGTCCCGAAT 59.588 52.381 0.00 0.00 0.00 3.34
373 374 1.784358 TACTCCATCCGTCCCGAATT 58.216 50.000 0.00 0.00 0.00 2.17
374 375 1.784358 ACTCCATCCGTCCCGAATTA 58.216 50.000 0.00 0.00 0.00 1.40
375 376 1.411612 ACTCCATCCGTCCCGAATTAC 59.588 52.381 0.00 0.00 0.00 1.89
376 377 1.687123 CTCCATCCGTCCCGAATTACT 59.313 52.381 0.00 0.00 0.00 2.24
377 378 2.102588 CTCCATCCGTCCCGAATTACTT 59.897 50.000 0.00 0.00 0.00 2.24
378 379 2.159014 TCCATCCGTCCCGAATTACTTG 60.159 50.000 0.00 0.00 0.00 3.16
379 380 2.419574 CCATCCGTCCCGAATTACTTGT 60.420 50.000 0.00 0.00 0.00 3.16
380 381 2.660189 TCCGTCCCGAATTACTTGTC 57.340 50.000 0.00 0.00 0.00 3.18
381 382 1.135315 TCCGTCCCGAATTACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
382 383 0.643820 CGTCCCGAATTACTTGTCGC 59.356 55.000 0.00 0.00 35.93 5.19
383 384 1.734707 CGTCCCGAATTACTTGTCGCT 60.735 52.381 0.00 0.00 35.93 4.93
384 385 1.925185 GTCCCGAATTACTTGTCGCTC 59.075 52.381 0.00 0.00 35.93 5.03
385 386 1.546923 TCCCGAATTACTTGTCGCTCA 59.453 47.619 0.00 0.00 35.93 4.26
386 387 2.028839 TCCCGAATTACTTGTCGCTCAA 60.029 45.455 0.00 0.00 35.93 3.02
387 388 2.739913 CCCGAATTACTTGTCGCTCAAA 59.260 45.455 0.00 0.00 35.93 2.69
388 389 3.374058 CCCGAATTACTTGTCGCTCAAAT 59.626 43.478 0.00 0.00 35.93 2.32
389 390 4.569162 CCCGAATTACTTGTCGCTCAAATA 59.431 41.667 0.00 0.00 35.93 1.40
390 391 5.490213 CCGAATTACTTGTCGCTCAAATAC 58.510 41.667 0.00 0.00 35.93 1.89
391 392 5.062934 CCGAATTACTTGTCGCTCAAATACA 59.937 40.000 0.00 0.00 35.93 2.29
392 393 6.238103 CCGAATTACTTGTCGCTCAAATACAT 60.238 38.462 0.00 0.00 35.93 2.29
393 394 6.841286 CGAATTACTTGTCGCTCAAATACATC 59.159 38.462 0.00 0.00 35.48 3.06
394 395 7.254117 CGAATTACTTGTCGCTCAAATACATCT 60.254 37.037 0.00 0.00 35.48 2.90
395 396 8.942338 AATTACTTGTCGCTCAAATACATCTA 57.058 30.769 0.00 0.00 35.48 1.98
396 397 9.547753 AATTACTTGTCGCTCAAATACATCTAT 57.452 29.630 0.00 0.00 35.48 1.98
398 399 9.678941 TTACTTGTCGCTCAAATACATCTATAG 57.321 33.333 0.00 0.00 35.48 1.31
423 424 7.716998 AGATACATCCATTTGAGCGAGTAATTT 59.283 33.333 0.00 0.00 0.00 1.82
424 425 5.883661 ACATCCATTTGAGCGAGTAATTTG 58.116 37.500 0.00 0.00 0.00 2.32
425 426 5.647658 ACATCCATTTGAGCGAGTAATTTGA 59.352 36.000 0.00 0.00 0.00 2.69
426 427 5.545658 TCCATTTGAGCGAGTAATTTGAC 57.454 39.130 0.00 0.00 0.00 3.18
428 429 5.122239 TCCATTTGAGCGAGTAATTTGACAG 59.878 40.000 0.00 0.00 0.00 3.51
432 433 3.994392 TGAGCGAGTAATTTGACAGGAAC 59.006 43.478 0.00 0.00 0.00 3.62
439 440 6.105397 AGTAATTTGACAGGAACGGAGTAA 57.895 37.500 0.00 0.00 45.00 2.24
451 452 5.368816 AGGAACGGAGTAATATTTAGCCCTT 59.631 40.000 0.00 0.00 45.00 3.95
486 487 3.068024 TGGAAACAAAAGCCAAGCTACAG 59.932 43.478 0.00 0.00 35.58 2.74
525 526 0.037326 AGTGGGAGCATGTACACACG 60.037 55.000 16.47 0.00 44.01 4.49
540 541 0.389296 ACACGCTGCGCACACTATTA 60.389 50.000 23.51 0.00 0.00 0.98
541 542 0.930310 CACGCTGCGCACACTATTAT 59.070 50.000 23.51 0.00 0.00 1.28
542 543 1.071239 CACGCTGCGCACACTATTATC 60.071 52.381 23.51 0.00 0.00 1.75
543 544 0.508641 CGCTGCGCACACTATTATCC 59.491 55.000 5.66 0.00 0.00 2.59
544 545 0.868406 GCTGCGCACACTATTATCCC 59.132 55.000 5.66 0.00 0.00 3.85
545 546 1.810031 GCTGCGCACACTATTATCCCA 60.810 52.381 5.66 0.00 0.00 4.37
546 547 2.771089 CTGCGCACACTATTATCCCAT 58.229 47.619 5.66 0.00 0.00 4.00
547 548 2.481568 CTGCGCACACTATTATCCCATG 59.518 50.000 5.66 0.00 0.00 3.66
570 572 4.050852 CCATTGGGCATAGCTTTTTCTC 57.949 45.455 0.00 0.00 0.00 2.87
600 602 2.224549 TGTACCGTTGCCATCTTTTTCG 59.775 45.455 0.00 0.00 0.00 3.46
603 605 2.161609 ACCGTTGCCATCTTTTTCGATC 59.838 45.455 0.00 0.00 0.00 3.69
606 608 1.378531 TGCCATCTTTTTCGATCGGG 58.621 50.000 16.41 6.84 0.00 5.14
643 645 1.137872 CCGTCCCATCTCTCTTTCCTG 59.862 57.143 0.00 0.00 0.00 3.86
662 664 1.902508 TGCAAAACCAGACAAACCCAA 59.097 42.857 0.00 0.00 0.00 4.12
663 665 2.276201 GCAAAACCAGACAAACCCAAC 58.724 47.619 0.00 0.00 0.00 3.77
862 896 2.750350 CACACCTCCCCACCTCAC 59.250 66.667 0.00 0.00 0.00 3.51
866 900 0.546747 CACCTCCCCACCTCACCTTA 60.547 60.000 0.00 0.00 0.00 2.69
874 908 3.621558 CCCACCTCACCTTAAATTCCTC 58.378 50.000 0.00 0.00 0.00 3.71
875 909 3.621558 CCACCTCACCTTAAATTCCTCC 58.378 50.000 0.00 0.00 0.00 4.30
876 910 3.267031 CCACCTCACCTTAAATTCCTCCT 59.733 47.826 0.00 0.00 0.00 3.69
906 940 1.133216 CATCGAGAAACGCAGAGGAGA 59.867 52.381 0.00 0.00 42.26 3.71
952 1013 3.307445 CAGGCAGACTGGAGGAGG 58.693 66.667 4.26 0.00 43.70 4.30
953 1014 1.305633 CAGGCAGACTGGAGGAGGA 60.306 63.158 4.26 0.00 43.70 3.71
954 1015 1.001503 AGGCAGACTGGAGGAGGAG 59.998 63.158 4.26 0.00 0.00 3.69
969 1030 0.839853 AGGAGCAGGAGCAGAGGTTT 60.840 55.000 0.00 0.00 45.49 3.27
1256 1317 0.543749 CAGACTCCCATCCAGGTTCC 59.456 60.000 0.00 0.00 34.66 3.62
1278 1345 1.255667 TTCGTCTCCCCCACAGCTAC 61.256 60.000 0.00 0.00 0.00 3.58
1297 1366 0.179097 CCTCCTCCTCTTTACTGCGC 60.179 60.000 0.00 0.00 0.00 6.09
1300 1369 0.460987 CCTCCTCTTTACTGCGCCTG 60.461 60.000 4.18 0.00 0.00 4.85
1322 1391 3.681593 CGGTTCTTGGTTTATTCCTGGA 58.318 45.455 0.00 0.00 0.00 3.86
1348 1432 2.548920 GGTAGAGCAATGGAGGATTCGG 60.549 54.545 0.00 0.00 0.00 4.30
1398 1482 9.703892 TCATGGATAGTAAAACACCAAAATTTG 57.296 29.630 0.00 0.00 34.28 2.32
1399 1483 7.954788 TGGATAGTAAAACACCAAAATTTGC 57.045 32.000 0.00 0.00 0.00 3.68
1400 1484 7.731054 TGGATAGTAAAACACCAAAATTTGCT 58.269 30.769 0.00 0.00 34.22 3.91
1401 1485 7.870445 TGGATAGTAAAACACCAAAATTTGCTC 59.130 33.333 0.00 0.00 32.48 4.26
1402 1486 7.330946 GGATAGTAAAACACCAAAATTTGCTCC 59.669 37.037 0.00 0.00 32.48 4.70
1415 1499 7.302524 CAAAATTTGCTCCTTTTTCATGGATG 58.697 34.615 0.00 0.00 0.00 3.51
1417 1501 5.549742 TTTGCTCCTTTTTCATGGATGTT 57.450 34.783 0.00 0.00 0.00 2.71
1434 1518 4.488879 GATGTTTGCCCAGTCAAATCTTC 58.511 43.478 0.00 0.00 38.12 2.87
1453 1544 5.324409 TCTTCCCTGTTCTGCATTACATTT 58.676 37.500 1.97 0.00 0.00 2.32
1509 1601 4.864247 GGATATGTTTGTTTGCACATCCAC 59.136 41.667 0.00 0.00 35.24 4.02
1596 1701 7.581011 AACATGCTTTTTATCGTCAAATTCC 57.419 32.000 0.00 0.00 0.00 3.01
1639 1744 2.281761 CCCCTGTTCTTGCGTGCT 60.282 61.111 0.00 0.00 0.00 4.40
1642 1747 0.602638 CCCTGTTCTTGCGTGCTACA 60.603 55.000 0.00 0.00 0.00 2.74
1653 1758 2.232696 TGCGTGCTACATCTGTTTCCTA 59.767 45.455 0.00 0.00 0.00 2.94
1752 1883 0.388263 GGACGAGTGAGACGAAACCC 60.388 60.000 0.00 0.00 34.70 4.11
1762 1893 2.037381 GAGACGAAACCCTTGTTCCTCT 59.963 50.000 0.00 0.00 32.15 3.69
1763 1894 2.037381 AGACGAAACCCTTGTTCCTCTC 59.963 50.000 0.00 0.00 32.15 3.20
1764 1895 1.071857 ACGAAACCCTTGTTCCTCTCC 59.928 52.381 0.00 0.00 32.15 3.71
1765 1896 1.348036 CGAAACCCTTGTTCCTCTCCT 59.652 52.381 0.00 0.00 32.15 3.69
1775 1910 0.924823 TTCCTCTCCTACCTACGGCT 59.075 55.000 0.00 0.00 0.00 5.52
1941 2114 2.483491 CTGTCCTCTTGCTCTTTTGCTC 59.517 50.000 0.00 0.00 0.00 4.26
2055 2264 4.765339 AGTTTAACCTGGTTTACATCTGCC 59.235 41.667 18.58 0.00 0.00 4.85
2057 2269 2.969821 ACCTGGTTTACATCTGCCAA 57.030 45.000 0.00 0.00 0.00 4.52
2112 2398 7.661847 CCATGTCTGTTTCTAGTATTTATCCCC 59.338 40.741 0.00 0.00 0.00 4.81
2113 2399 7.989947 TGTCTGTTTCTAGTATTTATCCCCT 57.010 36.000 0.00 0.00 0.00 4.79
2128 2414 6.524101 TTATCCCCTTGTATGTTTTGCTTC 57.476 37.500 0.00 0.00 0.00 3.86
2228 2573 2.423538 GGTTCTTGGATCCCAATTCGTG 59.576 50.000 9.90 0.00 43.07 4.35
2230 2575 3.931907 TCTTGGATCCCAATTCGTGAT 57.068 42.857 9.90 0.00 43.07 3.06
2231 2576 3.544684 TCTTGGATCCCAATTCGTGATG 58.455 45.455 9.90 0.00 43.07 3.07
2318 2740 1.354368 TCTTGGACCCCCATTCTGTTC 59.646 52.381 0.00 0.00 43.12 3.18
2324 2746 3.265995 GGACCCCCATTCTGTTCTTTCTA 59.734 47.826 0.00 0.00 0.00 2.10
2543 2965 3.947459 TACAGGCTTGCCGGCACA 61.947 61.111 32.95 19.43 41.46 4.57
2555 2977 2.049063 GGCACACTCGAGACGCTT 60.049 61.111 21.68 0.00 0.00 4.68
2760 3182 1.210870 GACGCTCGGTAACAACAACA 58.789 50.000 0.00 0.00 0.00 3.33
2761 3183 0.932399 ACGCTCGGTAACAACAACAC 59.068 50.000 0.00 0.00 0.00 3.32
2762 3184 0.233848 CGCTCGGTAACAACAACACC 59.766 55.000 0.00 0.00 0.00 4.16
2763 3185 0.589708 GCTCGGTAACAACAACACCC 59.410 55.000 0.00 0.00 0.00 4.61
2764 3186 1.956297 CTCGGTAACAACAACACCCA 58.044 50.000 0.00 0.00 0.00 4.51
2765 3187 2.290464 CTCGGTAACAACAACACCCAA 58.710 47.619 0.00 0.00 0.00 4.12
2766 3188 2.015587 TCGGTAACAACAACACCCAAC 58.984 47.619 0.00 0.00 0.00 3.77
2767 3189 2.018515 CGGTAACAACAACACCCAACT 58.981 47.619 0.00 0.00 0.00 3.16
2768 3190 3.118482 TCGGTAACAACAACACCCAACTA 60.118 43.478 0.00 0.00 0.00 2.24
2769 3191 3.002553 CGGTAACAACAACACCCAACTAC 59.997 47.826 0.00 0.00 0.00 2.73
2770 3192 3.002553 GGTAACAACAACACCCAACTACG 59.997 47.826 0.00 0.00 0.00 3.51
2771 3193 1.018910 ACAACAACACCCAACTACGC 58.981 50.000 0.00 0.00 0.00 4.42
3176 3613 3.329889 TTCCTGGCGCTGGACCAT 61.330 61.111 19.22 0.00 36.36 3.55
3311 3748 1.000396 GAGGATGGGCAGCAGGTTT 60.000 57.895 0.00 0.00 0.00 3.27
3398 3835 4.393155 TGCAAGGACGCGCAGGAT 62.393 61.111 5.73 0.00 33.34 3.24
3431 3868 1.517832 CGTGAGGGACAGGATGGAC 59.482 63.158 0.00 0.00 43.62 4.02
3595 4044 0.250513 GGTGCAAAGGAGGAGACGAT 59.749 55.000 0.00 0.00 0.00 3.73
3665 4120 2.145536 CTTTTGGCATTTTGGCTGGTC 58.854 47.619 2.66 0.00 44.10 4.02
3666 4121 0.033228 TTTGGCATTTTGGCTGGTCG 59.967 50.000 2.66 0.00 44.10 4.79
3667 4122 0.825425 TTGGCATTTTGGCTGGTCGA 60.825 50.000 2.66 0.00 44.10 4.20
3668 4123 0.611618 TGGCATTTTGGCTGGTCGAT 60.612 50.000 2.66 0.00 44.10 3.59
3669 4124 0.101219 GGCATTTTGGCTGGTCGATC 59.899 55.000 0.00 0.00 40.14 3.69
3670 4125 1.098050 GCATTTTGGCTGGTCGATCT 58.902 50.000 0.00 0.00 0.00 2.75
3717 4187 3.556004 GGTGAAGGAGGAAGAACAGAGTG 60.556 52.174 0.00 0.00 0.00 3.51
3840 4361 4.018050 AGGTTGACAGCCCTCATCTTTATT 60.018 41.667 4.47 0.00 0.00 1.40
3912 4438 3.836949 CACATGTGTGGATTACTTTGGC 58.163 45.455 18.03 0.00 42.10 4.52
3931 4457 2.880890 GGCTGTTGATGAGTTTGTCACT 59.119 45.455 0.00 0.00 38.28 3.41
4000 4534 5.348164 AGTCGTCTGGTTTTTCAAATTTGG 58.652 37.500 17.90 0.00 0.00 3.28
4015 4549 9.672673 TTTCAAATTTGGGTAAGTTGATTTTCA 57.327 25.926 17.90 0.00 46.52 2.69
4016 4550 9.672673 TTCAAATTTGGGTAAGTTGATTTTCAA 57.327 25.926 17.90 0.00 46.52 2.69
4023 4557 4.907582 GGTAAGTTGATTTTCAAACCGTCG 59.092 41.667 0.00 0.00 38.22 5.12
4027 4561 3.612472 TGATTTTCAAACCGTCGGTTC 57.388 42.857 28.96 15.64 46.20 3.62
4029 4563 4.378774 TGATTTTCAAACCGTCGGTTCTA 58.621 39.130 28.96 17.31 46.20 2.10
4038 4572 2.298163 ACCGTCGGTTCTATTGTCAAGT 59.702 45.455 12.23 0.00 27.29 3.16
4049 4583 8.074370 GGTTCTATTGTCAAGTTTTGTACCTTC 58.926 37.037 0.00 0.00 0.00 3.46
4056 4590 7.309920 TGTCAAGTTTTGTACCTTCTTTTGTC 58.690 34.615 0.00 0.00 0.00 3.18
4057 4591 6.750501 GTCAAGTTTTGTACCTTCTTTTGTCC 59.249 38.462 0.00 0.00 0.00 4.02
4058 4592 6.661805 TCAAGTTTTGTACCTTCTTTTGTCCT 59.338 34.615 0.00 0.00 0.00 3.85
4059 4593 6.451064 AGTTTTGTACCTTCTTTTGTCCTG 57.549 37.500 0.00 0.00 0.00 3.86
4060 4594 5.949952 AGTTTTGTACCTTCTTTTGTCCTGT 59.050 36.000 0.00 0.00 0.00 4.00
4061 4595 5.828299 TTTGTACCTTCTTTTGTCCTGTG 57.172 39.130 0.00 0.00 0.00 3.66
4062 4596 4.497291 TGTACCTTCTTTTGTCCTGTGT 57.503 40.909 0.00 0.00 0.00 3.72
4072 4606 8.934023 TTCTTTTGTCCTGTGTTATTATTCCT 57.066 30.769 0.00 0.00 0.00 3.36
4108 4642 9.651718 CCGTATTCTTGTATATTTCAGAAAAGC 57.348 33.333 0.00 0.00 0.00 3.51
4112 4646 7.072177 TCTTGTATATTTCAGAAAAGCGTGG 57.928 36.000 0.00 0.00 0.00 4.94
4117 4651 7.806014 TGTATATTTCAGAAAAGCGTGGTTTTC 59.194 33.333 22.89 22.89 43.81 2.29
4212 4747 9.435688 AATTATGCAAACTCATTTTCCCTTAAC 57.564 29.630 0.00 0.00 0.00 2.01
4284 4820 3.456380 AAGGGTAGTACCGAACCACTA 57.544 47.619 13.27 0.00 39.83 2.74
4285 4821 3.456380 AGGGTAGTACCGAACCACTAA 57.544 47.619 13.27 0.00 39.83 2.24
4290 4826 3.930634 AGTACCGAACCACTAACTCAC 57.069 47.619 0.00 0.00 0.00 3.51
4300 4836 6.748198 CGAACCACTAACTCACTATTTCTCTC 59.252 42.308 0.00 0.00 0.00 3.20
4384 4920 5.351948 GGTATTACCAATGCCACCAATTT 57.648 39.130 8.03 0.00 42.52 1.82
4385 4921 5.739959 GGTATTACCAATGCCACCAATTTT 58.260 37.500 8.03 0.00 42.52 1.82
4386 4922 5.584251 GGTATTACCAATGCCACCAATTTTG 59.416 40.000 8.03 0.00 42.52 2.44
4387 4923 4.963318 TTACCAATGCCACCAATTTTGA 57.037 36.364 0.00 0.00 0.00 2.69
4388 4924 5.495926 TTACCAATGCCACCAATTTTGAT 57.504 34.783 0.00 0.00 0.00 2.57
4389 4925 4.370094 ACCAATGCCACCAATTTTGATT 57.630 36.364 0.00 0.00 0.00 2.57
4390 4926 4.325972 ACCAATGCCACCAATTTTGATTC 58.674 39.130 0.00 0.00 0.00 2.52
4391 4927 3.690628 CCAATGCCACCAATTTTGATTCC 59.309 43.478 0.00 0.00 0.00 3.01
4392 4928 4.566070 CCAATGCCACCAATTTTGATTCCT 60.566 41.667 0.00 0.00 0.00 3.36
4393 4929 4.914177 ATGCCACCAATTTTGATTCCTT 57.086 36.364 0.00 0.00 0.00 3.36
4397 4933 5.541868 TGCCACCAATTTTGATTCCTTCTTA 59.458 36.000 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.549349 GGGTGGTCGTGACATTTGTACT 60.549 50.000 2.00 0.00 0.00 2.73
1 2 1.802365 GGGTGGTCGTGACATTTGTAC 59.198 52.381 2.00 0.00 0.00 2.90
2 3 1.416772 TGGGTGGTCGTGACATTTGTA 59.583 47.619 2.00 0.00 0.00 2.41
3 4 0.181587 TGGGTGGTCGTGACATTTGT 59.818 50.000 2.00 0.00 0.00 2.83
4 5 1.533625 ATGGGTGGTCGTGACATTTG 58.466 50.000 2.00 0.00 0.00 2.32
5 6 2.286365 AATGGGTGGTCGTGACATTT 57.714 45.000 2.00 0.00 0.00 2.32
6 7 2.286365 AAATGGGTGGTCGTGACATT 57.714 45.000 2.00 0.00 33.55 2.71
7 8 2.159382 GAAAATGGGTGGTCGTGACAT 58.841 47.619 2.00 0.00 0.00 3.06
8 9 1.600023 GAAAATGGGTGGTCGTGACA 58.400 50.000 2.00 0.00 0.00 3.58
9 10 0.515564 CGAAAATGGGTGGTCGTGAC 59.484 55.000 0.00 0.00 0.00 3.67
10 11 0.107081 ACGAAAATGGGTGGTCGTGA 59.893 50.000 0.00 0.00 44.48 4.35
11 12 2.624169 ACGAAAATGGGTGGTCGTG 58.376 52.632 0.00 0.00 44.48 4.35
12 13 0.179040 ACACGAAAATGGGTGGTCGT 60.179 50.000 0.00 0.00 46.95 4.34
13 14 0.237235 CACACGAAAATGGGTGGTCG 59.763 55.000 0.00 0.00 38.46 4.79
14 15 0.039527 GCACACGAAAATGGGTGGTC 60.040 55.000 0.00 0.00 38.46 4.02
15 16 0.753479 TGCACACGAAAATGGGTGGT 60.753 50.000 0.00 0.00 38.46 4.16
16 17 0.602562 ATGCACACGAAAATGGGTGG 59.397 50.000 0.00 0.00 38.46 4.61
17 18 2.727607 CGTATGCACACGAAAATGGGTG 60.728 50.000 13.28 0.00 44.69 4.61
18 19 1.466950 CGTATGCACACGAAAATGGGT 59.533 47.619 13.28 0.00 44.69 4.51
19 20 2.172593 CGTATGCACACGAAAATGGG 57.827 50.000 13.28 0.00 44.69 4.00
53 54 9.295825 ACTCAAACACAAATTCACCATATCTAA 57.704 29.630 0.00 0.00 0.00 2.10
54 55 8.862325 ACTCAAACACAAATTCACCATATCTA 57.138 30.769 0.00 0.00 0.00 1.98
55 56 7.765695 ACTCAAACACAAATTCACCATATCT 57.234 32.000 0.00 0.00 0.00 1.98
59 60 8.303876 GGTTATACTCAAACACAAATTCACCAT 58.696 33.333 0.00 0.00 0.00 3.55
60 61 7.255660 GGGTTATACTCAAACACAAATTCACCA 60.256 37.037 0.00 0.00 30.37 4.17
61 62 7.088272 GGGTTATACTCAAACACAAATTCACC 58.912 38.462 0.00 0.00 30.37 4.02
62 63 7.088272 GGGGTTATACTCAAACACAAATTCAC 58.912 38.462 0.00 0.00 31.63 3.18
63 64 6.778069 TGGGGTTATACTCAAACACAAATTCA 59.222 34.615 0.00 0.00 31.63 2.57
64 65 7.039993 AGTGGGGTTATACTCAAACACAAATTC 60.040 37.037 0.00 0.00 31.63 2.17
65 66 6.780522 AGTGGGGTTATACTCAAACACAAATT 59.219 34.615 0.00 0.00 31.63 1.82
66 67 6.311735 AGTGGGGTTATACTCAAACACAAAT 58.688 36.000 0.00 0.00 31.63 2.32
67 68 5.697067 AGTGGGGTTATACTCAAACACAAA 58.303 37.500 0.00 0.00 31.63 2.83
68 69 5.313280 AGTGGGGTTATACTCAAACACAA 57.687 39.130 0.00 0.00 31.63 3.33
69 70 4.986054 AGTGGGGTTATACTCAAACACA 57.014 40.909 0.00 0.00 31.63 3.72
70 71 7.148137 CCAAATAGTGGGGTTATACTCAAACAC 60.148 40.741 0.00 0.00 44.64 3.32
71 72 6.887545 CCAAATAGTGGGGTTATACTCAAACA 59.112 38.462 0.00 0.00 44.64 2.83
72 73 7.329588 CCAAATAGTGGGGTTATACTCAAAC 57.670 40.000 0.00 0.00 44.64 2.93
87 88 9.778993 CTTGAGAATACAAATGACCAAATAGTG 57.221 33.333 0.00 0.00 0.00 2.74
88 89 8.960591 CCTTGAGAATACAAATGACCAAATAGT 58.039 33.333 0.00 0.00 0.00 2.12
89 90 7.917505 GCCTTGAGAATACAAATGACCAAATAG 59.082 37.037 0.00 0.00 0.00 1.73
90 91 7.395772 TGCCTTGAGAATACAAATGACCAAATA 59.604 33.333 0.00 0.00 0.00 1.40
91 92 6.211184 TGCCTTGAGAATACAAATGACCAAAT 59.789 34.615 0.00 0.00 0.00 2.32
92 93 5.538053 TGCCTTGAGAATACAAATGACCAAA 59.462 36.000 0.00 0.00 0.00 3.28
93 94 5.076182 TGCCTTGAGAATACAAATGACCAA 58.924 37.500 0.00 0.00 0.00 3.67
94 95 4.661222 TGCCTTGAGAATACAAATGACCA 58.339 39.130 0.00 0.00 0.00 4.02
95 96 5.450965 CCATGCCTTGAGAATACAAATGACC 60.451 44.000 0.00 0.00 0.00 4.02
96 97 5.357878 TCCATGCCTTGAGAATACAAATGAC 59.642 40.000 0.00 0.00 0.00 3.06
97 98 5.508567 TCCATGCCTTGAGAATACAAATGA 58.491 37.500 0.00 0.00 0.00 2.57
98 99 5.840243 TCCATGCCTTGAGAATACAAATG 57.160 39.130 0.00 0.00 0.00 2.32
99 100 6.855763 TTTCCATGCCTTGAGAATACAAAT 57.144 33.333 0.00 0.00 0.00 2.32
100 101 6.662865 TTTTCCATGCCTTGAGAATACAAA 57.337 33.333 0.00 0.00 0.00 2.83
101 102 6.855763 ATTTTCCATGCCTTGAGAATACAA 57.144 33.333 0.00 0.00 0.00 2.41
102 103 6.855763 AATTTTCCATGCCTTGAGAATACA 57.144 33.333 0.00 0.00 0.00 2.29
103 104 9.822185 AAATAATTTTCCATGCCTTGAGAATAC 57.178 29.630 0.00 0.00 0.00 1.89
105 106 9.743581 AAAAATAATTTTCCATGCCTTGAGAAT 57.256 25.926 0.00 0.00 33.48 2.40
106 107 9.001542 CAAAAATAATTTTCCATGCCTTGAGAA 57.998 29.630 0.00 0.00 36.62 2.87
107 108 7.119553 GCAAAAATAATTTTCCATGCCTTGAGA 59.880 33.333 0.00 0.00 36.62 3.27
108 109 7.120138 AGCAAAAATAATTTTCCATGCCTTGAG 59.880 33.333 0.00 0.00 36.62 3.02
109 110 6.941436 AGCAAAAATAATTTTCCATGCCTTGA 59.059 30.769 0.00 0.00 36.62 3.02
110 111 7.094720 TGAGCAAAAATAATTTTCCATGCCTTG 60.095 33.333 0.00 0.00 36.62 3.61
111 112 6.941436 TGAGCAAAAATAATTTTCCATGCCTT 59.059 30.769 0.00 0.00 36.62 4.35
112 113 6.474630 TGAGCAAAAATAATTTTCCATGCCT 58.525 32.000 0.00 0.00 36.62 4.75
113 114 6.740411 TGAGCAAAAATAATTTTCCATGCC 57.260 33.333 0.00 0.00 36.62 4.40
114 115 7.245604 CCTTGAGCAAAAATAATTTTCCATGC 58.754 34.615 0.00 0.00 36.62 4.06
115 116 7.245604 GCCTTGAGCAAAAATAATTTTCCATG 58.754 34.615 0.00 0.00 42.97 3.66
116 117 7.381766 GCCTTGAGCAAAAATAATTTTCCAT 57.618 32.000 0.00 0.00 42.97 3.41
117 118 6.799926 GCCTTGAGCAAAAATAATTTTCCA 57.200 33.333 0.00 0.00 42.97 3.53
132 133 4.725790 AAATGACCAAATAGCCTTGAGC 57.274 40.909 0.00 0.00 44.25 4.26
133 134 5.106157 ACGAAAATGACCAAATAGCCTTGAG 60.106 40.000 0.00 0.00 0.00 3.02
134 135 4.764823 ACGAAAATGACCAAATAGCCTTGA 59.235 37.500 0.00 0.00 0.00 3.02
135 136 4.858692 CACGAAAATGACCAAATAGCCTTG 59.141 41.667 0.00 0.00 0.00 3.61
136 137 4.764823 TCACGAAAATGACCAAATAGCCTT 59.235 37.500 0.00 0.00 0.00 4.35
137 138 4.331968 TCACGAAAATGACCAAATAGCCT 58.668 39.130 0.00 0.00 0.00 4.58
138 139 4.695217 TCACGAAAATGACCAAATAGCC 57.305 40.909 0.00 0.00 0.00 3.93
139 140 8.856490 AATTATCACGAAAATGACCAAATAGC 57.144 30.769 0.00 0.00 0.00 2.97
143 144 9.534565 TGAAAAATTATCACGAAAATGACCAAA 57.465 25.926 0.00 0.00 0.00 3.28
144 145 9.534565 TTGAAAAATTATCACGAAAATGACCAA 57.465 25.926 0.00 0.00 0.00 3.67
145 146 8.973378 GTTGAAAAATTATCACGAAAATGACCA 58.027 29.630 0.00 0.00 0.00 4.02
146 147 9.191995 AGTTGAAAAATTATCACGAAAATGACC 57.808 29.630 0.00 0.00 0.00 4.02
184 185 2.224769 CCCTGTCTCAGCTGGGTAAAAA 60.225 50.000 14.66 0.00 41.17 1.94
185 186 1.351017 CCCTGTCTCAGCTGGGTAAAA 59.649 52.381 14.66 0.00 41.17 1.52
186 187 0.984230 CCCTGTCTCAGCTGGGTAAA 59.016 55.000 14.66 0.00 41.17 2.01
187 188 0.909610 CCCCTGTCTCAGCTGGGTAA 60.910 60.000 14.66 1.88 43.58 2.85
188 189 1.306141 CCCCTGTCTCAGCTGGGTA 60.306 63.158 14.66 3.18 43.58 3.69
189 190 2.608988 CCCCTGTCTCAGCTGGGT 60.609 66.667 14.66 0.00 43.58 4.51
190 191 2.284921 TCCCCTGTCTCAGCTGGG 60.285 66.667 15.13 11.57 44.38 4.45
191 192 2.985456 GTCCCCTGTCTCAGCTGG 59.015 66.667 15.13 4.77 0.00 4.85
192 193 1.943116 CTCGTCCCCTGTCTCAGCTG 61.943 65.000 7.63 7.63 0.00 4.24
193 194 1.680651 CTCGTCCCCTGTCTCAGCT 60.681 63.158 0.00 0.00 0.00 4.24
194 195 1.662438 CTCTCGTCCCCTGTCTCAGC 61.662 65.000 0.00 0.00 0.00 4.26
195 196 1.662438 GCTCTCGTCCCCTGTCTCAG 61.662 65.000 0.00 0.00 0.00 3.35
196 197 1.679305 GCTCTCGTCCCCTGTCTCA 60.679 63.158 0.00 0.00 0.00 3.27
197 198 1.662438 CTGCTCTCGTCCCCTGTCTC 61.662 65.000 0.00 0.00 0.00 3.36
198 199 1.680651 CTGCTCTCGTCCCCTGTCT 60.681 63.158 0.00 0.00 0.00 3.41
199 200 2.888863 CTGCTCTCGTCCCCTGTC 59.111 66.667 0.00 0.00 0.00 3.51
200 201 3.386237 GCTGCTCTCGTCCCCTGT 61.386 66.667 0.00 0.00 0.00 4.00
201 202 2.849120 CTTGCTGCTCTCGTCCCCTG 62.849 65.000 0.00 0.00 0.00 4.45
202 203 2.604686 TTGCTGCTCTCGTCCCCT 60.605 61.111 0.00 0.00 0.00 4.79
203 204 2.125350 CTTGCTGCTCTCGTCCCC 60.125 66.667 0.00 0.00 0.00 4.81
204 205 0.603975 AAACTTGCTGCTCTCGTCCC 60.604 55.000 0.00 0.00 0.00 4.46
205 206 2.080286 TAAACTTGCTGCTCTCGTCC 57.920 50.000 0.00 0.00 0.00 4.79
206 207 3.060602 ACTTAAACTTGCTGCTCTCGTC 58.939 45.455 0.00 0.00 0.00 4.20
207 208 3.113260 ACTTAAACTTGCTGCTCTCGT 57.887 42.857 0.00 0.00 0.00 4.18
208 209 3.059570 CGTACTTAAACTTGCTGCTCTCG 59.940 47.826 0.00 0.00 0.00 4.04
209 210 4.235360 TCGTACTTAAACTTGCTGCTCTC 58.765 43.478 0.00 0.00 0.00 3.20
210 211 4.022242 TCTCGTACTTAAACTTGCTGCTCT 60.022 41.667 0.00 0.00 0.00 4.09
211 212 4.235360 TCTCGTACTTAAACTTGCTGCTC 58.765 43.478 0.00 0.00 0.00 4.26
212 213 4.238514 CTCTCGTACTTAAACTTGCTGCT 58.761 43.478 0.00 0.00 0.00 4.24
213 214 3.368236 CCTCTCGTACTTAAACTTGCTGC 59.632 47.826 0.00 0.00 0.00 5.25
214 215 4.806330 TCCTCTCGTACTTAAACTTGCTG 58.194 43.478 0.00 0.00 0.00 4.41
215 216 5.464030 TTCCTCTCGTACTTAAACTTGCT 57.536 39.130 0.00 0.00 0.00 3.91
216 217 5.120363 CCTTTCCTCTCGTACTTAAACTTGC 59.880 44.000 0.00 0.00 0.00 4.01
217 218 5.638234 CCCTTTCCTCTCGTACTTAAACTTG 59.362 44.000 0.00 0.00 0.00 3.16
218 219 5.279859 CCCCTTTCCTCTCGTACTTAAACTT 60.280 44.000 0.00 0.00 0.00 2.66
219 220 4.222366 CCCCTTTCCTCTCGTACTTAAACT 59.778 45.833 0.00 0.00 0.00 2.66
220 221 4.502016 CCCCTTTCCTCTCGTACTTAAAC 58.498 47.826 0.00 0.00 0.00 2.01
221 222 3.516700 CCCCCTTTCCTCTCGTACTTAAA 59.483 47.826 0.00 0.00 0.00 1.52
222 223 3.102204 CCCCCTTTCCTCTCGTACTTAA 58.898 50.000 0.00 0.00 0.00 1.85
223 224 2.043526 ACCCCCTTTCCTCTCGTACTTA 59.956 50.000 0.00 0.00 0.00 2.24
224 225 1.203275 ACCCCCTTTCCTCTCGTACTT 60.203 52.381 0.00 0.00 0.00 2.24
225 226 0.412640 ACCCCCTTTCCTCTCGTACT 59.587 55.000 0.00 0.00 0.00 2.73
226 227 1.206610 GAACCCCCTTTCCTCTCGTAC 59.793 57.143 0.00 0.00 0.00 3.67
227 228 1.565067 GAACCCCCTTTCCTCTCGTA 58.435 55.000 0.00 0.00 0.00 3.43
228 229 1.542187 CGAACCCCCTTTCCTCTCGT 61.542 60.000 0.00 0.00 0.00 4.18
229 230 1.218316 CGAACCCCCTTTCCTCTCG 59.782 63.158 0.00 0.00 0.00 4.04
230 231 1.078356 GCGAACCCCCTTTCCTCTC 60.078 63.158 0.00 0.00 0.00 3.20
231 232 1.134438 AAGCGAACCCCCTTTCCTCT 61.134 55.000 0.00 0.00 0.00 3.69
232 233 0.960861 CAAGCGAACCCCCTTTCCTC 60.961 60.000 0.00 0.00 0.00 3.71
233 234 1.074951 CAAGCGAACCCCCTTTCCT 59.925 57.895 0.00 0.00 0.00 3.36
234 235 2.636412 GCAAGCGAACCCCCTTTCC 61.636 63.158 0.00 0.00 0.00 3.13
235 236 1.866853 CTGCAAGCGAACCCCCTTTC 61.867 60.000 0.00 0.00 0.00 2.62
236 237 1.903404 CTGCAAGCGAACCCCCTTT 60.903 57.895 0.00 0.00 0.00 3.11
237 238 2.282462 CTGCAAGCGAACCCCCTT 60.282 61.111 0.00 0.00 0.00 3.95
238 239 4.351054 CCTGCAAGCGAACCCCCT 62.351 66.667 0.00 0.00 0.00 4.79
243 244 3.435186 GAGCCCCTGCAAGCGAAC 61.435 66.667 0.00 0.00 41.13 3.95
244 245 2.697147 AAAGAGCCCCTGCAAGCGAA 62.697 55.000 0.00 0.00 41.13 4.70
245 246 3.196207 AAAGAGCCCCTGCAAGCGA 62.196 57.895 0.00 0.00 41.13 4.93
246 247 2.674380 AAAGAGCCCCTGCAAGCG 60.674 61.111 0.00 0.00 41.13 4.68
247 248 2.346541 GGAAAGAGCCCCTGCAAGC 61.347 63.158 0.00 0.00 41.13 4.01
248 249 2.042831 CGGAAAGAGCCCCTGCAAG 61.043 63.158 0.00 0.00 41.13 4.01
249 250 2.034066 CGGAAAGAGCCCCTGCAA 59.966 61.111 0.00 0.00 41.13 4.08
250 251 2.927856 TCGGAAAGAGCCCCTGCA 60.928 61.111 0.00 0.00 41.13 4.41
251 252 2.436824 GTCGGAAAGAGCCCCTGC 60.437 66.667 0.00 0.00 37.95 4.85
252 253 2.125512 CGTCGGAAAGAGCCCCTG 60.126 66.667 0.00 0.00 0.00 4.45
253 254 1.911766 TTCGTCGGAAAGAGCCCCT 60.912 57.895 0.00 0.00 0.00 4.79
254 255 1.740664 GTTCGTCGGAAAGAGCCCC 60.741 63.158 0.00 0.00 33.05 5.80
255 256 1.740664 GGTTCGTCGGAAAGAGCCC 60.741 63.158 6.41 0.00 33.05 5.19
256 257 0.320508 AAGGTTCGTCGGAAAGAGCC 60.321 55.000 8.79 8.79 37.92 4.70
257 258 1.069255 GAAGGTTCGTCGGAAAGAGC 58.931 55.000 0.00 0.00 33.05 4.09
258 259 2.059541 GTGAAGGTTCGTCGGAAAGAG 58.940 52.381 0.00 0.00 33.05 2.85
259 260 1.684983 AGTGAAGGTTCGTCGGAAAGA 59.315 47.619 0.00 0.00 33.05 2.52
260 261 2.059541 GAGTGAAGGTTCGTCGGAAAG 58.940 52.381 0.00 0.00 33.05 2.62
261 262 1.601162 CGAGTGAAGGTTCGTCGGAAA 60.601 52.381 6.45 0.00 34.50 3.13
262 263 0.039798 CGAGTGAAGGTTCGTCGGAA 60.040 55.000 6.45 0.00 34.50 4.30
263 264 0.886043 TCGAGTGAAGGTTCGTCGGA 60.886 55.000 12.03 0.00 37.07 4.55
264 265 0.170561 ATCGAGTGAAGGTTCGTCGG 59.829 55.000 12.03 0.00 37.07 4.79
265 266 1.135774 TGATCGAGTGAAGGTTCGTCG 60.136 52.381 7.61 7.61 37.99 5.12
266 267 2.631418 TGATCGAGTGAAGGTTCGTC 57.369 50.000 0.00 0.00 37.99 4.20
267 268 2.609737 GGTTGATCGAGTGAAGGTTCGT 60.610 50.000 0.00 0.00 37.99 3.85
268 269 1.993370 GGTTGATCGAGTGAAGGTTCG 59.007 52.381 0.00 0.00 38.13 3.95
269 270 2.347731 GGGTTGATCGAGTGAAGGTTC 58.652 52.381 0.00 0.00 0.00 3.62
270 271 1.003233 GGGGTTGATCGAGTGAAGGTT 59.997 52.381 0.00 0.00 0.00 3.50
271 272 0.613777 GGGGTTGATCGAGTGAAGGT 59.386 55.000 0.00 0.00 0.00 3.50
272 273 0.107654 GGGGGTTGATCGAGTGAAGG 60.108 60.000 0.00 0.00 0.00 3.46
273 274 3.460648 GGGGGTTGATCGAGTGAAG 57.539 57.895 0.00 0.00 0.00 3.02
288 289 1.069668 CTAACTAATCGTTCCCGGGGG 59.930 57.143 23.50 10.92 37.05 5.40
289 290 1.069668 CCTAACTAATCGTTCCCGGGG 59.930 57.143 23.50 6.77 37.05 5.73
290 291 2.034124 TCCTAACTAATCGTTCCCGGG 58.966 52.381 16.85 16.85 37.05 5.73
291 292 2.542411 CGTCCTAACTAATCGTTCCCGG 60.542 54.545 0.00 0.00 37.05 5.73
292 293 2.098117 ACGTCCTAACTAATCGTTCCCG 59.902 50.000 0.00 0.00 37.05 5.14
293 294 3.442100 CACGTCCTAACTAATCGTTCCC 58.558 50.000 0.00 0.00 37.05 3.97
294 295 2.856557 GCACGTCCTAACTAATCGTTCC 59.143 50.000 0.00 0.00 37.05 3.62
295 296 2.856557 GGCACGTCCTAACTAATCGTTC 59.143 50.000 0.00 0.00 37.05 3.95
296 297 2.494870 AGGCACGTCCTAACTAATCGTT 59.505 45.455 4.93 0.00 45.41 3.85
297 298 2.097825 AGGCACGTCCTAACTAATCGT 58.902 47.619 4.93 0.00 45.41 3.73
298 299 2.460918 CAGGCACGTCCTAACTAATCG 58.539 52.381 6.28 0.00 45.52 3.34
299 300 2.159085 AGCAGGCACGTCCTAACTAATC 60.159 50.000 6.28 0.00 45.52 1.75
300 301 1.831736 AGCAGGCACGTCCTAACTAAT 59.168 47.619 6.28 0.00 45.52 1.73
301 302 1.203994 GAGCAGGCACGTCCTAACTAA 59.796 52.381 6.28 0.00 45.52 2.24
302 303 0.815734 GAGCAGGCACGTCCTAACTA 59.184 55.000 6.28 0.00 45.52 2.24
303 304 1.592223 GAGCAGGCACGTCCTAACT 59.408 57.895 6.28 7.17 45.52 2.24
304 305 1.448013 GGAGCAGGCACGTCCTAAC 60.448 63.158 6.28 3.20 45.52 2.34
305 306 1.609501 AGGAGCAGGCACGTCCTAA 60.610 57.895 6.28 0.00 45.52 2.69
306 307 2.037367 AGGAGCAGGCACGTCCTA 59.963 61.111 6.28 0.00 45.52 2.94
308 309 3.941657 GACAGGAGCAGGCACGTCC 62.942 68.421 0.00 0.00 0.00 4.79
309 310 2.433318 GACAGGAGCAGGCACGTC 60.433 66.667 0.00 0.00 0.00 4.34
310 311 2.116983 AATGACAGGAGCAGGCACGT 62.117 55.000 0.00 0.00 0.00 4.49
311 312 0.108186 TAATGACAGGAGCAGGCACG 60.108 55.000 0.00 0.00 0.00 5.34
312 313 1.661341 CTAATGACAGGAGCAGGCAC 58.339 55.000 0.00 0.00 0.00 5.01
313 314 0.543277 CCTAATGACAGGAGCAGGCA 59.457 55.000 0.00 0.00 38.00 4.75
314 315 0.179034 CCCTAATGACAGGAGCAGGC 60.179 60.000 0.00 0.00 38.00 4.85
315 316 1.139853 GACCCTAATGACAGGAGCAGG 59.860 57.143 0.00 0.00 38.00 4.85
316 317 1.139853 GGACCCTAATGACAGGAGCAG 59.860 57.143 0.00 0.00 38.00 4.24
317 318 1.204146 GGACCCTAATGACAGGAGCA 58.796 55.000 0.00 0.00 38.00 4.26
318 319 1.501582 AGGACCCTAATGACAGGAGC 58.498 55.000 0.00 0.00 38.00 4.70
319 320 2.840651 ACAAGGACCCTAATGACAGGAG 59.159 50.000 0.00 0.00 38.00 3.69
320 321 2.915869 ACAAGGACCCTAATGACAGGA 58.084 47.619 0.00 0.00 38.00 3.86
321 322 3.721087 AACAAGGACCCTAATGACAGG 57.279 47.619 0.00 0.00 35.26 4.00
322 323 5.770162 AGAAAAACAAGGACCCTAATGACAG 59.230 40.000 0.00 0.00 0.00 3.51
323 324 5.534654 CAGAAAAACAAGGACCCTAATGACA 59.465 40.000 0.00 0.00 0.00 3.58
324 325 5.564848 GCAGAAAAACAAGGACCCTAATGAC 60.565 44.000 0.00 0.00 0.00 3.06
325 326 4.522789 GCAGAAAAACAAGGACCCTAATGA 59.477 41.667 0.00 0.00 0.00 2.57
326 327 4.321974 GGCAGAAAAACAAGGACCCTAATG 60.322 45.833 0.00 0.00 0.00 1.90
327 328 3.832490 GGCAGAAAAACAAGGACCCTAAT 59.168 43.478 0.00 0.00 0.00 1.73
328 329 3.117284 AGGCAGAAAAACAAGGACCCTAA 60.117 43.478 0.00 0.00 0.00 2.69
329 330 2.445525 AGGCAGAAAAACAAGGACCCTA 59.554 45.455 0.00 0.00 0.00 3.53
330 331 1.217942 AGGCAGAAAAACAAGGACCCT 59.782 47.619 0.00 0.00 0.00 4.34
331 332 1.704641 AGGCAGAAAAACAAGGACCC 58.295 50.000 0.00 0.00 0.00 4.46
332 333 2.430694 ACAAGGCAGAAAAACAAGGACC 59.569 45.455 0.00 0.00 0.00 4.46
333 334 3.801114 ACAAGGCAGAAAAACAAGGAC 57.199 42.857 0.00 0.00 0.00 3.85
334 335 4.953579 AGTAACAAGGCAGAAAAACAAGGA 59.046 37.500 0.00 0.00 0.00 3.36
335 336 5.262588 AGTAACAAGGCAGAAAAACAAGG 57.737 39.130 0.00 0.00 0.00 3.61
336 337 5.163561 TGGAGTAACAAGGCAGAAAAACAAG 60.164 40.000 0.00 0.00 0.00 3.16
337 338 4.707448 TGGAGTAACAAGGCAGAAAAACAA 59.293 37.500 0.00 0.00 0.00 2.83
338 339 4.274147 TGGAGTAACAAGGCAGAAAAACA 58.726 39.130 0.00 0.00 0.00 2.83
339 340 4.911514 TGGAGTAACAAGGCAGAAAAAC 57.088 40.909 0.00 0.00 0.00 2.43
340 341 4.522789 GGATGGAGTAACAAGGCAGAAAAA 59.477 41.667 0.00 0.00 0.00 1.94
341 342 4.079253 GGATGGAGTAACAAGGCAGAAAA 58.921 43.478 0.00 0.00 0.00 2.29
342 343 3.686016 GGATGGAGTAACAAGGCAGAAA 58.314 45.455 0.00 0.00 0.00 2.52
343 344 2.354704 CGGATGGAGTAACAAGGCAGAA 60.355 50.000 0.00 0.00 0.00 3.02
344 345 1.207089 CGGATGGAGTAACAAGGCAGA 59.793 52.381 0.00 0.00 0.00 4.26
345 346 1.066143 ACGGATGGAGTAACAAGGCAG 60.066 52.381 0.00 0.00 0.00 4.85
346 347 0.981183 ACGGATGGAGTAACAAGGCA 59.019 50.000 0.00 0.00 0.00 4.75
347 348 1.653151 GACGGATGGAGTAACAAGGC 58.347 55.000 0.00 0.00 0.00 4.35
348 349 1.134491 GGGACGGATGGAGTAACAAGG 60.134 57.143 0.00 0.00 0.00 3.61
349 350 2.311124 GGGACGGATGGAGTAACAAG 57.689 55.000 0.00 0.00 0.00 3.16
364 365 1.925185 GAGCGACAAGTAATTCGGGAC 59.075 52.381 0.00 0.00 35.73 4.46
365 366 1.546923 TGAGCGACAAGTAATTCGGGA 59.453 47.619 0.00 0.00 35.73 5.14
366 367 2.004583 TGAGCGACAAGTAATTCGGG 57.995 50.000 0.00 0.00 35.73 5.14
367 368 4.600012 ATTTGAGCGACAAGTAATTCGG 57.400 40.909 0.00 0.00 39.77 4.30
368 369 6.089920 TGTATTTGAGCGACAAGTAATTCG 57.910 37.500 0.00 0.00 39.77 3.34
369 370 7.910304 AGATGTATTTGAGCGACAAGTAATTC 58.090 34.615 0.00 4.96 39.77 2.17
370 371 7.849804 AGATGTATTTGAGCGACAAGTAATT 57.150 32.000 0.00 0.00 39.77 1.40
372 373 9.678941 CTATAGATGTATTTGAGCGACAAGTAA 57.321 33.333 0.00 0.00 39.77 2.24
373 374 9.063615 TCTATAGATGTATTTGAGCGACAAGTA 57.936 33.333 0.00 0.00 39.77 2.24
374 375 7.941919 TCTATAGATGTATTTGAGCGACAAGT 58.058 34.615 0.00 0.00 39.77 3.16
375 376 8.978564 ATCTATAGATGTATTTGAGCGACAAG 57.021 34.615 14.60 0.00 35.16 3.16
376 377 9.841880 GTATCTATAGATGTATTTGAGCGACAA 57.158 33.333 23.03 0.00 36.05 3.18
377 378 9.010029 TGTATCTATAGATGTATTTGAGCGACA 57.990 33.333 23.03 12.50 36.05 4.35
380 381 9.457110 GGATGTATCTATAGATGTATTTGAGCG 57.543 37.037 23.03 0.00 36.05 5.03
389 390 7.978414 CGCTCAAATGGATGTATCTATAGATGT 59.022 37.037 23.03 10.39 36.05 3.06
390 391 8.193438 TCGCTCAAATGGATGTATCTATAGATG 58.807 37.037 23.03 5.99 36.05 2.90
391 392 8.298729 TCGCTCAAATGGATGTATCTATAGAT 57.701 34.615 18.99 18.99 38.51 1.98
392 393 7.394641 ACTCGCTCAAATGGATGTATCTATAGA 59.605 37.037 4.57 4.57 0.00 1.98
393 394 7.542890 ACTCGCTCAAATGGATGTATCTATAG 58.457 38.462 0.00 0.00 0.00 1.31
394 395 7.468141 ACTCGCTCAAATGGATGTATCTATA 57.532 36.000 0.00 0.00 0.00 1.31
395 396 6.352016 ACTCGCTCAAATGGATGTATCTAT 57.648 37.500 0.00 0.00 0.00 1.98
396 397 5.791336 ACTCGCTCAAATGGATGTATCTA 57.209 39.130 0.00 0.00 0.00 1.98
397 398 4.679373 ACTCGCTCAAATGGATGTATCT 57.321 40.909 0.00 0.00 0.00 1.98
398 399 7.426929 AATTACTCGCTCAAATGGATGTATC 57.573 36.000 0.00 0.00 0.00 2.24
423 424 6.278363 GCTAAATATTACTCCGTTCCTGTCA 58.722 40.000 0.00 0.00 0.00 3.58
424 425 5.695363 GGCTAAATATTACTCCGTTCCTGTC 59.305 44.000 0.00 0.00 0.00 3.51
425 426 5.454329 GGGCTAAATATTACTCCGTTCCTGT 60.454 44.000 0.00 0.00 0.00 4.00
426 427 4.995487 GGGCTAAATATTACTCCGTTCCTG 59.005 45.833 0.00 0.00 0.00 3.86
428 429 5.224821 AGGGCTAAATATTACTCCGTTCC 57.775 43.478 0.00 0.00 0.00 3.62
432 433 8.617290 AAATGTAAGGGCTAAATATTACTCCG 57.383 34.615 0.00 0.00 0.00 4.63
459 460 4.949238 AGCTTGGCTTTTGTTTCCAAAAAT 59.051 33.333 2.66 0.00 46.80 1.82
460 461 4.331108 AGCTTGGCTTTTGTTTCCAAAAA 58.669 34.783 2.66 0.00 46.80 1.94
466 467 4.568152 TCTGTAGCTTGGCTTTTGTTTC 57.432 40.909 0.00 0.00 40.44 2.78
474 475 2.406559 AGATGGATCTGTAGCTTGGCT 58.593 47.619 0.00 0.00 38.02 4.75
503 504 2.496070 GTGTGTACATGCTCCCACTCTA 59.504 50.000 0.00 0.00 0.00 2.43
559 560 7.379750 GGTACAAAGAGAGAGAGAAAAAGCTA 58.620 38.462 0.00 0.00 0.00 3.32
570 572 2.288825 TGGCAACGGTACAAAGAGAGAG 60.289 50.000 0.00 0.00 42.51 3.20
600 602 4.095036 GTGGTTTCTGAATTCTTCCCGATC 59.905 45.833 7.05 0.00 0.00 3.69
603 605 2.488153 GGTGGTTTCTGAATTCTTCCCG 59.512 50.000 7.05 0.00 0.00 5.14
606 608 3.188667 GGACGGTGGTTTCTGAATTCTTC 59.811 47.826 7.05 0.00 0.00 2.87
643 645 2.276201 GTTGGGTTTGTCTGGTTTTGC 58.724 47.619 0.00 0.00 0.00 3.68
747 758 3.437795 CAAAGGCCAGCTCTGCGG 61.438 66.667 5.01 0.00 0.00 5.69
749 760 2.273912 AAGCAAAGGCCAGCTCTGC 61.274 57.895 16.31 11.23 40.90 4.26
751 762 2.273912 GCAAGCAAAGGCCAGCTCT 61.274 57.895 16.31 5.96 40.90 4.09
859 893 4.440808 TGGGTAGGAGGAATTTAAGGTGA 58.559 43.478 0.00 0.00 0.00 4.02
862 896 3.435169 GGCTGGGTAGGAGGAATTTAAGG 60.435 52.174 0.00 0.00 0.00 2.69
866 900 0.546598 CGGCTGGGTAGGAGGAATTT 59.453 55.000 0.00 0.00 0.00 1.82
874 908 3.506059 CTCGATGCGGCTGGGTAGG 62.506 68.421 0.00 0.00 0.00 3.18
875 909 2.016393 TTCTCGATGCGGCTGGGTAG 62.016 60.000 0.00 0.00 0.00 3.18
876 910 1.609635 TTTCTCGATGCGGCTGGGTA 61.610 55.000 0.00 0.00 0.00 3.69
906 940 2.418746 CCTCGCTATATAGCCGCCATTT 60.419 50.000 25.48 0.00 46.34 2.32
932 993 4.463879 CCTCCAGTCTGCCTGCCG 62.464 72.222 0.00 0.00 40.06 5.69
950 1011 0.839853 AAACCTCTGCTCCTGCTCCT 60.840 55.000 0.00 0.00 40.48 3.69
951 1012 0.037447 AAAACCTCTGCTCCTGCTCC 59.963 55.000 0.00 0.00 40.48 4.70
952 1013 1.538950 CAAAAACCTCTGCTCCTGCTC 59.461 52.381 0.00 0.00 40.48 4.26
953 1014 1.133668 ACAAAAACCTCTGCTCCTGCT 60.134 47.619 0.00 0.00 40.48 4.24
954 1015 1.322442 ACAAAAACCTCTGCTCCTGC 58.678 50.000 0.00 0.00 40.20 4.85
969 1030 4.442375 TCTCCGCAAGAAAACAAACAAA 57.558 36.364 0.00 0.00 43.02 2.83
1256 1317 1.893786 CTGTGGGGGAGACGAAGAG 59.106 63.158 0.00 0.00 0.00 2.85
1278 1345 0.179097 GCGCAGTAAAGAGGAGGAGG 60.179 60.000 0.30 0.00 0.00 4.30
1300 1369 2.163613 CCAGGAATAAACCAAGAACCGC 59.836 50.000 0.00 0.00 0.00 5.68
1310 1379 6.377146 TGCTCTACCATTTTCCAGGAATAAAC 59.623 38.462 1.58 0.00 0.00 2.01
1322 1391 4.591321 TCCTCCATTGCTCTACCATTTT 57.409 40.909 0.00 0.00 0.00 1.82
1348 1432 5.574891 AAAAGGGCAAATTTTGGTGTTTC 57.425 34.783 10.96 0.00 0.00 2.78
1372 1456 9.703892 CAAATTTTGGTGTTTTACTATCCATGA 57.296 29.630 0.00 0.00 0.00 3.07
1373 1457 8.442384 GCAAATTTTGGTGTTTTACTATCCATG 58.558 33.333 10.96 0.00 0.00 3.66
1374 1458 8.374743 AGCAAATTTTGGTGTTTTACTATCCAT 58.625 29.630 12.73 0.00 40.37 3.41
1375 1459 7.731054 AGCAAATTTTGGTGTTTTACTATCCA 58.269 30.769 12.73 0.00 40.37 3.41
1376 1460 7.330946 GGAGCAAATTTTGGTGTTTTACTATCC 59.669 37.037 17.86 5.75 42.23 2.59
1377 1461 8.088365 AGGAGCAAATTTTGGTGTTTTACTATC 58.912 33.333 17.86 0.57 42.23 2.08
1378 1462 7.962441 AGGAGCAAATTTTGGTGTTTTACTAT 58.038 30.769 17.86 0.00 42.23 2.12
1379 1463 7.354751 AGGAGCAAATTTTGGTGTTTTACTA 57.645 32.000 17.86 0.00 42.23 1.82
1380 1464 6.233905 AGGAGCAAATTTTGGTGTTTTACT 57.766 33.333 17.86 0.48 42.23 2.24
1381 1465 6.918892 AAGGAGCAAATTTTGGTGTTTTAC 57.081 33.333 17.86 3.20 42.23 2.01
1382 1466 7.929941 AAAAGGAGCAAATTTTGGTGTTTTA 57.070 28.000 17.86 0.00 42.23 1.52
1383 1467 6.832520 AAAAGGAGCAAATTTTGGTGTTTT 57.167 29.167 17.86 17.49 42.23 2.43
1384 1468 6.432472 TGAAAAAGGAGCAAATTTTGGTGTTT 59.568 30.769 17.86 13.42 42.23 2.83
1385 1469 5.942826 TGAAAAAGGAGCAAATTTTGGTGTT 59.057 32.000 17.86 8.70 42.23 3.32
1386 1470 5.495640 TGAAAAAGGAGCAAATTTTGGTGT 58.504 33.333 17.86 3.15 42.23 4.16
1387 1471 6.432107 CATGAAAAAGGAGCAAATTTTGGTG 58.568 36.000 17.86 0.00 42.23 4.17
1388 1472 5.532032 CCATGAAAAAGGAGCAAATTTTGGT 59.468 36.000 13.32 13.32 45.34 3.67
1389 1473 5.764192 TCCATGAAAAAGGAGCAAATTTTGG 59.236 36.000 10.96 0.00 0.00 3.28
1390 1474 6.864360 TCCATGAAAAAGGAGCAAATTTTG 57.136 33.333 4.72 4.72 0.00 2.44
1391 1475 6.999871 ACATCCATGAAAAAGGAGCAAATTTT 59.000 30.769 0.00 0.00 37.34 1.82
1392 1476 6.536447 ACATCCATGAAAAAGGAGCAAATTT 58.464 32.000 0.00 0.00 37.34 1.82
1393 1477 6.117975 ACATCCATGAAAAAGGAGCAAATT 57.882 33.333 0.00 0.00 37.34 1.82
1394 1478 5.750352 ACATCCATGAAAAAGGAGCAAAT 57.250 34.783 0.00 0.00 37.34 2.32
1395 1479 5.549742 AACATCCATGAAAAAGGAGCAAA 57.450 34.783 0.00 0.00 37.34 3.68
1396 1480 5.299148 CAAACATCCATGAAAAAGGAGCAA 58.701 37.500 0.00 0.00 37.34 3.91
1397 1481 4.800249 GCAAACATCCATGAAAAAGGAGCA 60.800 41.667 0.00 0.00 37.34 4.26
1398 1482 3.681417 GCAAACATCCATGAAAAAGGAGC 59.319 43.478 0.00 0.00 37.34 4.70
1399 1483 4.248058 GGCAAACATCCATGAAAAAGGAG 58.752 43.478 0.00 0.00 37.34 3.69
1400 1484 3.007831 GGGCAAACATCCATGAAAAAGGA 59.992 43.478 0.00 0.00 38.50 3.36
1401 1485 3.244491 TGGGCAAACATCCATGAAAAAGG 60.244 43.478 0.00 0.00 0.00 3.11
1402 1486 3.998341 CTGGGCAAACATCCATGAAAAAG 59.002 43.478 0.00 0.00 31.95 2.27
1415 1499 2.029020 GGGAAGATTTGACTGGGCAAAC 60.029 50.000 3.55 0.00 40.23 2.93
1417 1501 1.428912 AGGGAAGATTTGACTGGGCAA 59.571 47.619 0.00 0.00 0.00 4.52
1434 1518 5.649782 AGAAAATGTAATGCAGAACAGGG 57.350 39.130 9.48 0.00 0.00 4.45
1453 1544 4.378770 GCGATTTGCAGTGAATCTCAAGAA 60.379 41.667 7.75 0.00 45.45 2.52
1509 1601 8.850156 CCCAAGATAATAAGACAACTAATTGGG 58.150 37.037 0.00 0.00 44.19 4.12
1564 1657 6.381801 ACGATAAAAAGCATGTTTGAGGAAG 58.618 36.000 0.00 0.00 0.00 3.46
1596 1701 1.495878 GAGCGATGATACAGTGCTGG 58.504 55.000 4.11 0.00 35.73 4.85
1639 1744 7.074653 AGTGAAAAGGTAGGAAACAGATGTA 57.925 36.000 0.00 0.00 0.00 2.29
1642 1747 5.241728 GCAAGTGAAAAGGTAGGAAACAGAT 59.758 40.000 0.00 0.00 0.00 2.90
1653 1758 0.386838 GCTGCTGCAAGTGAAAAGGT 59.613 50.000 11.11 0.00 39.41 3.50
1775 1910 3.181501 CCAAATTAGGCAAGAATCGCGAA 60.182 43.478 15.24 0.00 0.00 4.70
1874 2027 4.920640 TGGGATGCGTTTAAGAAAACAA 57.079 36.364 2.33 0.00 44.37 2.83
1957 2130 7.797062 AGTAGTAGTAGTAGTACTTGGTACCC 58.203 42.308 20.24 2.56 41.00 3.69
2055 2264 7.376866 GTCACATGTTCATGTACAACTTTCTTG 59.623 37.037 16.44 4.14 32.74 3.02
2057 2269 6.017109 GGTCACATGTTCATGTACAACTTTCT 60.017 38.462 16.44 0.00 32.74 2.52
2108 2394 4.112634 AGAAGCAAAACATACAAGGGGA 57.887 40.909 0.00 0.00 0.00 4.81
2112 2398 6.308766 GGCATGTAAGAAGCAAAACATACAAG 59.691 38.462 0.00 0.00 31.55 3.16
2113 2399 6.155827 GGCATGTAAGAAGCAAAACATACAA 58.844 36.000 0.00 0.00 31.55 2.41
2128 2414 3.550437 AGTAGAAGCAGGGCATGTAAG 57.450 47.619 0.00 0.00 0.00 2.34
2173 2502 6.442487 TCGTCAGTCAGTTAAATTTGTACG 57.558 37.500 0.00 0.00 0.00 3.67
2259 2675 9.173021 ACTGTATTTGAATATCGATGTCCAAAA 57.827 29.630 10.37 5.28 0.00 2.44
2281 2697 6.215845 GTCCAAGAACAAATTATTGCACTGT 58.784 36.000 0.00 0.00 40.34 3.55
2318 2740 2.305927 ACATGACACCCCCTGTAGAAAG 59.694 50.000 0.00 0.00 31.03 2.62
2324 2746 0.620556 GATCACATGACACCCCCTGT 59.379 55.000 0.00 0.00 34.96 4.00
2526 2948 3.947459 TGTGCCGGCAAGCCTGTA 61.947 61.111 34.66 1.55 0.00 2.74
2534 2956 4.357947 GTCTCGAGTGTGCCGGCA 62.358 66.667 29.03 29.03 0.00 5.69
2543 2965 0.241481 GGAACTCAAGCGTCTCGAGT 59.759 55.000 13.13 0.00 41.70 4.18
2760 3182 4.078516 GAGGCGGCGTAGTTGGGT 62.079 66.667 9.37 0.00 0.00 4.51
2762 3184 4.124351 TCGAGGCGGCGTAGTTGG 62.124 66.667 9.37 0.00 0.00 3.77
2763 3185 2.879462 GTCGAGGCGGCGTAGTTG 60.879 66.667 9.37 0.00 0.00 3.16
3616 4067 3.270027 CACCATGGAAACTAATCGCTCA 58.730 45.455 21.47 0.00 0.00 4.26
3665 4120 0.595567 GAGCAGAGCAGAGCAGATCG 60.596 60.000 0.00 0.00 0.00 3.69
3666 4121 0.748450 AGAGCAGAGCAGAGCAGATC 59.252 55.000 0.00 0.00 0.00 2.75
3667 4122 0.462375 CAGAGCAGAGCAGAGCAGAT 59.538 55.000 0.00 0.00 0.00 2.90
3668 4123 0.899253 ACAGAGCAGAGCAGAGCAGA 60.899 55.000 0.00 0.00 0.00 4.26
3669 4124 0.458889 GACAGAGCAGAGCAGAGCAG 60.459 60.000 0.00 0.00 0.00 4.24
3670 4125 0.899253 AGACAGAGCAGAGCAGAGCA 60.899 55.000 0.00 0.00 0.00 4.26
3717 4187 4.989168 CCTGTCTGTCAGTAACCACTTAAC 59.011 45.833 0.00 0.00 42.19 2.01
3816 4337 1.366319 AGATGAGGGCTGTCAACCTT 58.634 50.000 0.00 0.00 37.18 3.50
3871 4392 8.246180 ACATGTGCTAAAAACATTAGAGAATGG 58.754 33.333 0.00 0.00 45.83 3.16
3873 4394 8.796475 ACACATGTGCTAAAAACATTAGAGAAT 58.204 29.630 25.68 0.00 36.10 2.40
3874 4395 8.075574 CACACATGTGCTAAAAACATTAGAGAA 58.924 33.333 25.68 0.00 39.39 2.87
3878 4399 6.676950 TCCACACATGTGCTAAAAACATTAG 58.323 36.000 25.68 0.00 44.34 1.73
3883 4404 6.677913 AGTAATCCACACATGTGCTAAAAAC 58.322 36.000 25.68 16.33 44.34 2.43
3935 4461 4.746729 TCCATTTAAACATGCATGACAGC 58.253 39.130 32.75 0.00 0.00 4.40
3936 4462 7.837202 AAATCCATTTAAACATGCATGACAG 57.163 32.000 32.75 13.75 0.00 3.51
3937 4463 8.618702 AAAAATCCATTTAAACATGCATGACA 57.381 26.923 32.75 13.89 0.00 3.58
3974 4508 7.489757 CCAAATTTGAAAAACCAGACGACTTAA 59.510 33.333 19.86 0.00 0.00 1.85
3975 4509 6.975772 CCAAATTTGAAAAACCAGACGACTTA 59.024 34.615 19.86 0.00 0.00 2.24
3992 4526 9.715123 GTTTGAAAATCAACTTACCCAAATTTG 57.285 29.630 11.40 11.40 35.89 2.32
4000 4534 4.907582 CGACGGTTTGAAAATCAACTTACC 59.092 41.667 3.43 3.43 35.89 2.85
4013 4547 3.243805 TGACAATAGAACCGACGGTTTGA 60.244 43.478 31.54 22.35 46.95 2.69
4015 4549 3.389925 TGACAATAGAACCGACGGTTT 57.610 42.857 31.54 22.28 46.95 3.27
4023 4557 7.506328 AGGTACAAAACTTGACAATAGAACC 57.494 36.000 0.00 0.00 0.00 3.62
4029 4563 8.311109 ACAAAAGAAGGTACAAAACTTGACAAT 58.689 29.630 0.00 0.00 0.00 2.71
4038 4572 5.712917 ACACAGGACAAAAGAAGGTACAAAA 59.287 36.000 0.00 0.00 0.00 2.44
4049 4583 8.567285 AGAGGAATAATAACACAGGACAAAAG 57.433 34.615 0.00 0.00 0.00 2.27
4082 4616 9.651718 GCTTTTCTGAAATATACAAGAATACGG 57.348 33.333 3.31 0.00 0.00 4.02
4106 4640 1.032014 ATTGCACAGAAAACCACGCT 58.968 45.000 0.00 0.00 0.00 5.07
4108 4642 4.856115 AAAAATTGCACAGAAAACCACG 57.144 36.364 0.00 0.00 0.00 4.94
4189 4724 7.531857 TGTTAAGGGAAAATGAGTTTGCATA 57.468 32.000 0.00 0.00 39.21 3.14
4191 4726 5.860941 TGTTAAGGGAAAATGAGTTTGCA 57.139 34.783 0.00 0.00 39.21 4.08
4276 4812 7.603651 TGAGAGAAATAGTGAGTTAGTGGTTC 58.396 38.462 0.00 0.00 0.00 3.62
4390 4926 9.415544 CAAAGAACATGAAATTTCCTAAGAAGG 57.584 33.333 15.48 0.24 45.21 3.46
4397 4933 9.702494 GAATCTTCAAAGAACATGAAATTTCCT 57.298 29.630 15.48 2.77 38.77 3.36
4435 4971 7.112705 GCTTATCGAAAAGATGCAAGAATAAGC 59.887 37.037 13.23 13.23 40.40 3.09
4443 4979 5.369685 TTGTGCTTATCGAAAAGATGCAA 57.630 34.783 0.00 0.00 39.14 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.