Multiple sequence alignment - TraesCS3B01G086000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G086000 chr3B 100.000 5890 0 0 1 5890 54507058 54501169 0.000000e+00 10877
1 TraesCS3B01G086000 chr3B 92.400 1329 63 16 3642 4950 53961720 53960410 0.000000e+00 1860
2 TraesCS3B01G086000 chr3B 91.710 772 54 4 1045 1806 53963987 53963216 0.000000e+00 1062
3 TraesCS3B01G086000 chr3B 87.517 745 70 9 1035 1759 54328339 54327598 0.000000e+00 839
4 TraesCS3B01G086000 chr3B 90.219 593 54 4 4359 4950 54316438 54315849 0.000000e+00 771
5 TraesCS3B01G086000 chr3B 82.000 900 93 43 5049 5890 54303211 54304099 0.000000e+00 701
6 TraesCS3B01G086000 chr3B 87.458 590 53 10 2245 2818 54327387 54326803 0.000000e+00 660
7 TraesCS3B01G086000 chr3B 80.023 886 115 40 5049 5890 53950358 53951225 3.040000e-167 599
8 TraesCS3B01G086000 chr3B 81.961 765 76 26 2922 3643 53962589 53961844 5.080000e-165 592
9 TraesCS3B01G086000 chr3B 84.630 514 44 17 2789 3277 54326779 54326276 4.130000e-131 479
10 TraesCS3B01G086000 chr3B 80.496 605 101 9 3 603 766013917 766014508 1.160000e-121 448
11 TraesCS3B01G086000 chr3B 89.908 327 27 4 3555 3877 54325925 54325601 3.280000e-112 416
12 TraesCS3B01G086000 chr3B 86.667 360 41 6 5049 5403 54069333 54068976 5.530000e-105 392
13 TraesCS3B01G086000 chr3B 94.141 256 14 1 3995 4250 54325564 54325310 7.160000e-104 388
14 TraesCS3B01G086000 chr3B 86.351 359 43 5 5049 5403 54145527 54145171 2.570000e-103 387
15 TraesCS3B01G086000 chr3B 81.075 465 72 14 276 730 738680115 738680573 2.020000e-94 357
16 TraesCS3B01G086000 chr3B 98.964 193 2 0 1809 2001 784525043 784524851 4.370000e-91 346
17 TraesCS3B01G086000 chr3B 98.446 193 2 1 1809 2001 784453905 784453714 7.310000e-89 339
18 TraesCS3B01G086000 chr3B 95.192 208 10 0 1803 2010 769208885 769209092 4.400000e-86 329
19 TraesCS3B01G086000 chr3B 94.712 208 11 0 1803 2010 769153031 769152824 2.050000e-84 324
20 TraesCS3B01G086000 chr3B 96.875 128 4 0 4236 4363 54325292 54325165 1.290000e-51 215
21 TraesCS3B01G086000 chr3B 85.644 202 25 4 5205 5403 53996302 53996102 5.980000e-50 209
22 TraesCS3B01G086000 chr3B 85.965 171 12 5 3400 3558 54326175 54326005 7.850000e-39 172
23 TraesCS3B01G086000 chr3B 85.294 102 9 6 5433 5533 54071034 54070938 3.760000e-17 100
24 TraesCS3B01G086000 chr3B 85.294 102 9 6 5433 5533 54147270 54147174 3.760000e-17 100
25 TraesCS3B01G086000 chr2A 92.742 1557 81 15 3420 4950 528106483 528108033 0.000000e+00 2220
26 TraesCS3B01G086000 chr2A 89.147 774 67 10 1039 1806 528104352 528105114 0.000000e+00 948
27 TraesCS3B01G086000 chr2A 86.599 888 80 25 2028 2893 528105147 528106017 0.000000e+00 944
28 TraesCS3B01G086000 chr2A 90.438 251 20 4 3447 3696 528102919 528103166 1.580000e-85 327
29 TraesCS3B01G086000 chr2A 80.429 373 34 11 2924 3274 528106017 528106372 1.270000e-61 248
30 TraesCS3B01G086000 chr2A 78.275 313 28 17 850 1147 528104089 528104376 1.310000e-36 165
31 TraesCS3B01G086000 chr3D 92.946 1446 80 10 3523 4950 31804672 31803231 0.000000e+00 2085
32 TraesCS3B01G086000 chr3D 93.715 1066 52 8 3890 4950 31965096 31966151 0.000000e+00 1583
33 TraesCS3B01G086000 chr3D 92.463 1088 47 12 4832 5890 31848531 31847450 0.000000e+00 1522
34 TraesCS3B01G086000 chr3D 86.078 1099 91 31 2204 3276 31963645 31964707 0.000000e+00 1125
35 TraesCS3B01G086000 chr3D 90.637 769 49 8 1045 1806 31806938 31806186 0.000000e+00 1000
36 TraesCS3B01G086000 chr3D 81.940 897 97 35 5049 5890 31775168 31776054 0.000000e+00 699
37 TraesCS3B01G086000 chr3D 88.581 578 45 12 2245 2805 31806011 31805438 0.000000e+00 682
38 TraesCS3B01G086000 chr3D 84.507 710 51 23 2789 3450 31805399 31804701 0.000000e+00 647
39 TraesCS3B01G086000 chr3D 79.534 772 107 23 7 752 522296219 522296965 2.450000e-138 503
40 TraesCS3B01G086000 chr3D 90.494 263 21 4 3447 3708 31848788 31848529 1.570000e-90 344
41 TraesCS3B01G086000 chr3D 80.242 496 55 24 808 1265 31962923 31963413 3.400000e-87 333
42 TraesCS3B01G086000 chr3D 92.857 210 15 0 1533 1742 31963414 31963623 7.420000e-79 305
43 TraesCS3B01G086000 chr3D 88.803 259 16 6 3407 3653 31964818 31965075 7.420000e-79 305
44 TraesCS3B01G086000 chr2B 85.120 793 63 24 2908 3653 227310766 227311550 0.000000e+00 760
45 TraesCS3B01G086000 chr2B 80.144 418 59 10 348 742 793502197 793501781 2.080000e-74 291
46 TraesCS3B01G086000 chr2B 80.311 386 43 18 2453 2818 227310295 227310667 1.630000e-65 261
47 TraesCS3B01G086000 chr2B 90.306 196 16 2 4433 4628 227311890 227312082 2.720000e-63 254
48 TraesCS3B01G086000 chr4D 83.702 724 102 10 13 730 370305213 370304500 0.000000e+00 669
49 TraesCS3B01G086000 chr4D 80.997 742 122 14 16 751 472941977 472942705 6.620000e-159 571
50 TraesCS3B01G086000 chr4D 81.893 243 39 5 517 755 35361650 35361409 3.600000e-47 200
51 TraesCS3B01G086000 chr6D 81.723 766 117 12 7 757 393928222 393927465 8.390000e-173 617
52 TraesCS3B01G086000 chr2D 82.471 599 80 14 13 608 192667212 192667788 8.810000e-138 501
53 TraesCS3B01G086000 chr2D 82.083 240 40 3 510 746 594470989 594471228 1.000000e-47 202
54 TraesCS3B01G086000 chr4B 81.973 588 92 13 100 679 57805169 57804588 2.470000e-133 486
55 TraesCS3B01G086000 chr7B 78.899 763 121 17 10 745 521201504 521202253 1.150000e-131 481
56 TraesCS3B01G086000 chr7B 98.969 194 2 0 1808 2001 65350297 65350104 1.210000e-91 348
57 TraesCS3B01G086000 chr7B 96.954 197 6 0 1805 2001 696253433 696253237 1.220000e-86 331
58 TraesCS3B01G086000 chr5D 80.060 672 103 17 3 651 391894295 391893632 2.480000e-128 470
59 TraesCS3B01G086000 chr4A 84.664 476 58 7 1045 1508 515589169 515588697 1.500000e-125 460
60 TraesCS3B01G086000 chr4A 77.111 450 96 7 312 756 560962681 560963128 2.720000e-63 254
61 TraesCS3B01G086000 chr4A 78.591 369 40 13 813 1160 515589530 515589180 2.150000e-49 207
62 TraesCS3B01G086000 chr1A 80.560 607 108 4 3 608 12419538 12420135 5.380000e-125 459
63 TraesCS3B01G086000 chr5A 78.947 646 115 15 129 757 491236907 491237548 2.540000e-113 420
64 TraesCS3B01G086000 chr5A 77.477 666 121 20 100 756 682612507 682613152 7.210000e-99 372
65 TraesCS3B01G086000 chr3A 99.482 193 1 0 1809 2001 749184055 749184247 9.390000e-93 351
66 TraesCS3B01G086000 chr6B 75.830 753 143 27 15 757 276748910 276748187 4.370000e-91 346
67 TraesCS3B01G086000 chr1B 96.923 195 6 0 1807 2001 7859704 7859898 1.580000e-85 327
68 TraesCS3B01G086000 chr5B 97.368 190 5 0 1809 1998 8541645 8541834 2.050000e-84 324
69 TraesCS3B01G086000 chr6A 83.740 123 18 2 3755 3876 50118391 50118270 1.340000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G086000 chr3B 54501169 54507058 5889 True 10877.000000 10877 100.000000 1 5890 1 chr3B.!!$R3 5889
1 TraesCS3B01G086000 chr3B 53960410 53963987 3577 True 1171.333333 1860 88.690333 1045 4950 3 chr3B.!!$R7 3905
2 TraesCS3B01G086000 chr3B 54315849 54316438 589 True 771.000000 771 90.219000 4359 4950 1 chr3B.!!$R2 591
3 TraesCS3B01G086000 chr3B 54303211 54304099 888 False 701.000000 701 82.000000 5049 5890 1 chr3B.!!$F2 841
4 TraesCS3B01G086000 chr3B 53950358 53951225 867 False 599.000000 599 80.023000 5049 5890 1 chr3B.!!$F1 841
5 TraesCS3B01G086000 chr3B 54325165 54328339 3174 True 452.714286 839 89.499143 1035 4363 7 chr3B.!!$R10 3328
6 TraesCS3B01G086000 chr3B 766013917 766014508 591 False 448.000000 448 80.496000 3 603 1 chr3B.!!$F4 600
7 TraesCS3B01G086000 chr3B 54068976 54071034 2058 True 246.000000 392 85.980500 5049 5533 2 chr3B.!!$R8 484
8 TraesCS3B01G086000 chr3B 54145171 54147270 2099 True 243.500000 387 85.822500 5049 5533 2 chr3B.!!$R9 484
9 TraesCS3B01G086000 chr2A 528102919 528108033 5114 False 808.666667 2220 86.271667 850 4950 6 chr2A.!!$F1 4100
10 TraesCS3B01G086000 chr3D 31803231 31806938 3707 True 1103.500000 2085 89.167750 1045 4950 4 chr3D.!!$R1 3905
11 TraesCS3B01G086000 chr3D 31847450 31848788 1338 True 933.000000 1522 91.478500 3447 5890 2 chr3D.!!$R2 2443
12 TraesCS3B01G086000 chr3D 31962923 31966151 3228 False 730.200000 1583 88.339000 808 4950 5 chr3D.!!$F3 4142
13 TraesCS3B01G086000 chr3D 31775168 31776054 886 False 699.000000 699 81.940000 5049 5890 1 chr3D.!!$F1 841
14 TraesCS3B01G086000 chr3D 522296219 522296965 746 False 503.000000 503 79.534000 7 752 1 chr3D.!!$F2 745
15 TraesCS3B01G086000 chr2B 227310295 227312082 1787 False 425.000000 760 85.245667 2453 4628 3 chr2B.!!$F1 2175
16 TraesCS3B01G086000 chr4D 370304500 370305213 713 True 669.000000 669 83.702000 13 730 1 chr4D.!!$R2 717
17 TraesCS3B01G086000 chr4D 472941977 472942705 728 False 571.000000 571 80.997000 16 751 1 chr4D.!!$F1 735
18 TraesCS3B01G086000 chr6D 393927465 393928222 757 True 617.000000 617 81.723000 7 757 1 chr6D.!!$R1 750
19 TraesCS3B01G086000 chr2D 192667212 192667788 576 False 501.000000 501 82.471000 13 608 1 chr2D.!!$F1 595
20 TraesCS3B01G086000 chr4B 57804588 57805169 581 True 486.000000 486 81.973000 100 679 1 chr4B.!!$R1 579
21 TraesCS3B01G086000 chr7B 521201504 521202253 749 False 481.000000 481 78.899000 10 745 1 chr7B.!!$F1 735
22 TraesCS3B01G086000 chr5D 391893632 391894295 663 True 470.000000 470 80.060000 3 651 1 chr5D.!!$R1 648
23 TraesCS3B01G086000 chr4A 515588697 515589530 833 True 333.500000 460 81.627500 813 1508 2 chr4A.!!$R1 695
24 TraesCS3B01G086000 chr1A 12419538 12420135 597 False 459.000000 459 80.560000 3 608 1 chr1A.!!$F1 605
25 TraesCS3B01G086000 chr5A 491236907 491237548 641 False 420.000000 420 78.947000 129 757 1 chr5A.!!$F1 628
26 TraesCS3B01G086000 chr5A 682612507 682613152 645 False 372.000000 372 77.477000 100 756 1 chr5A.!!$F2 656
27 TraesCS3B01G086000 chr6B 276748187 276748910 723 True 346.000000 346 75.830000 15 757 1 chr6B.!!$R1 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1321 0.030638 CAACGCAAACCCTCACCAAG 59.969 55.0 0.00 0.00 0.00 3.61 F
1851 2405 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.0 23.99 15.45 42.21 2.97 F
1981 2535 0.032130 TCCGCCGCTAAGATGCTTAG 59.968 55.0 9.30 9.30 0.00 2.18 F
3282 4087 0.104304 AACTTCAGAGTGTCGCGGTT 59.896 50.0 6.13 0.00 35.91 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2516 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.0 9.78 0.00 40.15 5.54 R
3646 4713 0.036858 GGTGGAGAGCTTGGTCTGTC 60.037 60.0 7.09 0.82 0.00 3.51 R
3756 4827 0.108585 TTGCACTCTTCACCTCCCAC 59.891 55.0 0.00 0.00 0.00 4.61 R
5145 6312 0.893727 ATGGCACCCCAGTTTCGTTC 60.894 55.0 0.00 0.00 46.24 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 2.104859 CGACTCCGTCTAGCCGACA 61.105 63.158 0.00 0.00 42.98 4.35
78 79 1.663379 CGTCTAGCCGACATCCACCA 61.663 60.000 0.00 0.00 42.98 4.17
774 836 3.790437 CCCGGCTGTGGATGCTCT 61.790 66.667 0.00 0.00 0.00 4.09
776 838 1.522092 CCGGCTGTGGATGCTCTTA 59.478 57.895 0.00 0.00 0.00 2.10
778 840 1.293924 CGGCTGTGGATGCTCTTAAG 58.706 55.000 0.00 0.00 0.00 1.85
791 853 2.610727 GCTCTTAAGCTTCACGTGGACT 60.611 50.000 17.00 7.89 45.55 3.85
792 854 3.654414 CTCTTAAGCTTCACGTGGACTT 58.346 45.455 17.00 17.73 0.00 3.01
794 856 4.553323 TCTTAAGCTTCACGTGGACTTAC 58.447 43.478 17.00 0.00 0.00 2.34
810 872 4.174762 GACTTACCAGACCTTCTTAAGCG 58.825 47.826 0.00 0.00 0.00 4.68
848 910 6.756299 TGTGCATGAAGATGTTATGCTAAA 57.244 33.333 0.00 0.00 45.53 1.85
915 1250 5.736486 TCGATTGCACTAGTACTACAGAG 57.264 43.478 0.00 0.00 0.00 3.35
947 1314 1.074248 CCTACCCAACGCAAACCCT 59.926 57.895 0.00 0.00 0.00 4.34
948 1315 0.958876 CCTACCCAACGCAAACCCTC 60.959 60.000 0.00 0.00 0.00 4.30
953 1320 1.388065 CCAACGCAAACCCTCACCAA 61.388 55.000 0.00 0.00 0.00 3.67
954 1321 0.030638 CAACGCAAACCCTCACCAAG 59.969 55.000 0.00 0.00 0.00 3.61
956 1323 2.919494 CGCAAACCCTCACCAAGGC 61.919 63.158 0.00 0.00 44.71 4.35
957 1324 1.531602 GCAAACCCTCACCAAGGCT 60.532 57.895 0.00 0.00 44.71 4.58
958 1325 1.115326 GCAAACCCTCACCAAGGCTT 61.115 55.000 0.00 0.00 44.71 4.35
959 1326 0.961753 CAAACCCTCACCAAGGCTTC 59.038 55.000 0.00 0.00 44.71 3.86
960 1327 0.178961 AAACCCTCACCAAGGCTTCC 60.179 55.000 0.00 0.00 44.71 3.46
961 1328 2.045926 CCCTCACCAAGGCTTCCG 60.046 66.667 0.00 0.00 44.71 4.30
1269 1792 4.035102 GGGAGTTTCCTGGCGGCT 62.035 66.667 11.43 0.00 36.57 5.52
1416 1955 1.145803 GCTCGCCGGTAATAATCCAC 58.854 55.000 1.90 0.00 0.00 4.02
1428 1967 6.518493 GGTAATAATCCACAGATTGGTCGTA 58.482 40.000 0.00 0.00 46.97 3.43
1480 2021 9.959749 TTAGTCAAATGTTAATCTTGTTGGTTC 57.040 29.630 0.00 0.00 0.00 3.62
1499 2040 2.447443 TCGTTACCTGTCAGAGCTGAT 58.553 47.619 0.00 0.00 42.18 2.90
1502 2043 3.516615 GTTACCTGTCAGAGCTGATGAC 58.483 50.000 17.84 17.84 45.88 3.06
1510 2051 5.388654 TGTCAGAGCTGATGACCATATCTA 58.611 41.667 20.53 3.37 45.24 1.98
1513 2054 5.835280 TCAGAGCTGATGACCATATCTAACA 59.165 40.000 0.00 0.00 34.14 2.41
1516 2057 5.303971 AGCTGATGACCATATCTAACAAGC 58.696 41.667 0.00 0.00 0.00 4.01
1526 2067 5.641209 CCATATCTAACAAGCTCATACCAGC 59.359 44.000 0.00 0.00 39.99 4.85
1530 2071 1.726853 ACAAGCTCATACCAGCGTTC 58.273 50.000 0.00 0.00 44.82 3.95
1651 2192 1.439644 GAGCTGGAGAAGGTAGGCG 59.560 63.158 0.00 0.00 36.52 5.52
1755 2301 8.417106 TCTTTTTACAAATTGACACCAGCATTA 58.583 29.630 0.00 0.00 0.00 1.90
1784 2338 7.226128 AGTTCAGTACAGTACCTAACAAAAAGC 59.774 37.037 20.20 1.30 0.00 3.51
1806 2360 1.686587 ACGGATGCTAATGTCGGATGA 59.313 47.619 0.00 0.00 0.00 2.92
1808 2362 2.072298 GGATGCTAATGTCGGATGAGC 58.928 52.381 0.00 0.00 0.00 4.26
1809 2363 2.548707 GGATGCTAATGTCGGATGAGCA 60.549 50.000 9.16 9.16 46.42 4.26
1810 2364 1.939974 TGCTAATGTCGGATGAGCAC 58.060 50.000 3.86 0.00 38.20 4.40
1812 2366 1.863454 GCTAATGTCGGATGAGCACTG 59.137 52.381 0.98 0.00 33.26 3.66
1814 2368 2.479566 AATGTCGGATGAGCACTGTT 57.520 45.000 0.00 0.00 0.00 3.16
1815 2369 2.479566 ATGTCGGATGAGCACTGTTT 57.520 45.000 0.00 0.00 0.00 2.83
1816 2370 2.254546 TGTCGGATGAGCACTGTTTT 57.745 45.000 0.00 0.00 0.00 2.43
1817 2371 3.394674 TGTCGGATGAGCACTGTTTTA 57.605 42.857 0.00 0.00 0.00 1.52
1818 2372 3.734463 TGTCGGATGAGCACTGTTTTAA 58.266 40.909 0.00 0.00 0.00 1.52
1819 2373 4.130857 TGTCGGATGAGCACTGTTTTAAA 58.869 39.130 0.00 0.00 0.00 1.52
1820 2374 4.759693 TGTCGGATGAGCACTGTTTTAAAT 59.240 37.500 0.00 0.00 0.00 1.40
1821 2375 5.935206 TGTCGGATGAGCACTGTTTTAAATA 59.065 36.000 0.00 0.00 0.00 1.40
1822 2376 6.092122 TGTCGGATGAGCACTGTTTTAAATAG 59.908 38.462 0.00 0.00 0.00 1.73
1823 2377 5.064707 TCGGATGAGCACTGTTTTAAATAGC 59.935 40.000 1.36 0.00 0.00 2.97
1824 2378 5.582550 GGATGAGCACTGTTTTAAATAGCC 58.417 41.667 1.36 0.00 0.00 3.93
1825 2379 5.450550 GGATGAGCACTGTTTTAAATAGCCC 60.451 44.000 1.36 0.00 0.00 5.19
1826 2380 3.438781 TGAGCACTGTTTTAAATAGCCCG 59.561 43.478 1.36 0.00 0.00 6.13
1827 2381 2.163613 AGCACTGTTTTAAATAGCCCGC 59.836 45.455 1.36 2.89 0.00 6.13
1828 2382 2.163613 GCACTGTTTTAAATAGCCCGCT 59.836 45.455 1.36 0.00 0.00 5.52
1829 2383 3.375922 GCACTGTTTTAAATAGCCCGCTA 59.624 43.478 0.00 0.00 0.00 4.26
1830 2384 4.036380 GCACTGTTTTAAATAGCCCGCTAT 59.964 41.667 3.31 3.31 40.63 2.97
1831 2385 5.237779 GCACTGTTTTAAATAGCCCGCTATA 59.762 40.000 9.56 0.00 38.20 1.31
1832 2386 6.565999 GCACTGTTTTAAATAGCCCGCTATAG 60.566 42.308 9.56 4.62 38.20 1.31
1833 2387 5.469084 ACTGTTTTAAATAGCCCGCTATAGC 59.531 40.000 15.09 15.09 38.20 2.97
1834 2388 5.617252 TGTTTTAAATAGCCCGCTATAGCT 58.383 37.500 21.98 6.31 43.20 3.32
1835 2389 5.699458 TGTTTTAAATAGCCCGCTATAGCTC 59.301 40.000 21.98 11.04 40.56 4.09
1836 2390 4.467198 TTAAATAGCCCGCTATAGCTCC 57.533 45.455 21.98 10.06 40.56 4.70
1837 2391 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
1838 2392 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
1839 2393 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
1840 2394 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
1848 2402 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
1849 2403 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
1850 2404 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
1851 2405 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
1852 2406 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
1872 2426 7.070183 GCTATAGCGTTTATAAAAGGTCTTGC 58.930 38.462 17.19 15.65 31.10 4.01
1873 2427 4.336532 AGCGTTTATAAAAGGTCTTGCG 57.663 40.909 9.60 3.69 0.00 4.85
1874 2428 2.844223 GCGTTTATAAAAGGTCTTGCGC 59.156 45.455 12.21 0.00 34.65 6.09
1875 2429 3.425758 GCGTTTATAAAAGGTCTTGCGCT 60.426 43.478 9.73 0.00 38.39 5.92
1876 2430 4.201744 GCGTTTATAAAAGGTCTTGCGCTA 60.202 41.667 9.73 0.00 38.39 4.26
1877 2431 5.671825 GCGTTTATAAAAGGTCTTGCGCTAA 60.672 40.000 9.73 0.00 38.39 3.09
1878 2432 5.957796 CGTTTATAAAAGGTCTTGCGCTAAG 59.042 40.000 9.73 11.02 37.76 2.18
1879 2433 6.183360 CGTTTATAAAAGGTCTTGCGCTAAGA 60.183 38.462 9.73 13.31 43.01 2.10
1880 2434 6.903883 TTATAAAAGGTCTTGCGCTAAGAG 57.096 37.500 18.44 8.07 45.71 2.85
1881 2435 3.402628 AAAAGGTCTTGCGCTAAGAGA 57.597 42.857 18.44 9.99 45.71 3.10
1882 2436 2.371910 AAGGTCTTGCGCTAAGAGAC 57.628 50.000 18.44 18.59 45.71 3.36
1883 2437 1.551452 AGGTCTTGCGCTAAGAGACT 58.449 50.000 22.91 18.83 45.71 3.24
1884 2438 1.896465 AGGTCTTGCGCTAAGAGACTT 59.104 47.619 22.91 17.23 45.71 3.01
1885 2439 2.300437 AGGTCTTGCGCTAAGAGACTTT 59.700 45.455 22.91 14.31 45.71 2.66
1886 2440 2.413453 GGTCTTGCGCTAAGAGACTTTG 59.587 50.000 22.91 0.00 45.71 2.77
1887 2441 3.318017 GTCTTGCGCTAAGAGACTTTGA 58.682 45.455 18.44 0.00 45.71 2.69
1888 2442 3.929610 GTCTTGCGCTAAGAGACTTTGAT 59.070 43.478 18.44 0.00 45.71 2.57
1889 2443 4.032331 GTCTTGCGCTAAGAGACTTTGATC 59.968 45.833 18.44 4.68 45.71 2.92
1890 2444 2.893637 TGCGCTAAGAGACTTTGATCC 58.106 47.619 9.73 0.00 0.00 3.36
1891 2445 2.233676 TGCGCTAAGAGACTTTGATCCA 59.766 45.455 9.73 0.00 0.00 3.41
1892 2446 3.262420 GCGCTAAGAGACTTTGATCCAA 58.738 45.455 0.00 0.00 0.00 3.53
1893 2447 3.684788 GCGCTAAGAGACTTTGATCCAAA 59.315 43.478 0.00 0.00 0.00 3.28
1894 2448 4.436183 GCGCTAAGAGACTTTGATCCAAAC 60.436 45.833 0.00 0.00 0.00 2.93
1895 2449 4.690748 CGCTAAGAGACTTTGATCCAAACA 59.309 41.667 0.00 0.00 0.00 2.83
1896 2450 5.179368 CGCTAAGAGACTTTGATCCAAACAA 59.821 40.000 0.00 0.00 0.00 2.83
1897 2451 6.293407 CGCTAAGAGACTTTGATCCAAACAAA 60.293 38.462 0.00 0.00 36.15 2.83
1898 2452 7.573843 CGCTAAGAGACTTTGATCCAAACAAAT 60.574 37.037 0.00 0.00 36.79 2.32
1899 2453 8.084684 GCTAAGAGACTTTGATCCAAACAAATT 58.915 33.333 0.00 0.00 36.79 1.82
1902 2456 9.750125 AAGAGACTTTGATCCAAACAAATTAAC 57.250 29.630 0.00 0.00 36.79 2.01
1903 2457 8.912988 AGAGACTTTGATCCAAACAAATTAACA 58.087 29.630 0.00 0.00 36.79 2.41
1904 2458 9.528018 GAGACTTTGATCCAAACAAATTAACAA 57.472 29.630 0.00 0.00 36.79 2.83
1905 2459 9.883142 AGACTTTGATCCAAACAAATTAACAAA 57.117 25.926 0.00 0.00 36.79 2.83
1906 2460 9.914923 GACTTTGATCCAAACAAATTAACAAAC 57.085 29.630 0.00 0.00 36.79 2.93
1907 2461 9.442047 ACTTTGATCCAAACAAATTAACAAACA 57.558 25.926 0.00 0.00 36.79 2.83
1911 2465 9.829507 TGATCCAAACAAATTAACAAACATTCT 57.170 25.926 0.00 0.00 0.00 2.40
1920 2474 9.885743 CAAATTAACAAACATTCTAAATAGCGC 57.114 29.630 0.00 0.00 0.00 5.92
1921 2475 7.892445 ATTAACAAACATTCTAAATAGCGCG 57.108 32.000 0.00 0.00 0.00 6.86
1922 2476 3.680789 ACAAACATTCTAAATAGCGCGC 58.319 40.909 26.66 26.66 0.00 6.86
1923 2477 3.374058 ACAAACATTCTAAATAGCGCGCT 59.626 39.130 38.01 38.01 0.00 5.92
1924 2478 4.569162 ACAAACATTCTAAATAGCGCGCTA 59.431 37.500 39.72 39.72 0.00 4.26
1925 2479 5.236478 ACAAACATTCTAAATAGCGCGCTAT 59.764 36.000 40.32 40.32 40.63 2.97
1926 2480 6.422701 ACAAACATTCTAAATAGCGCGCTATA 59.577 34.615 43.81 31.73 38.20 1.31
1927 2481 6.633668 AACATTCTAAATAGCGCGCTATAG 57.366 37.500 43.81 37.11 38.20 1.31
1928 2482 4.563184 ACATTCTAAATAGCGCGCTATAGC 59.437 41.667 43.81 15.09 38.20 2.97
1929 2483 4.436242 TTCTAAATAGCGCGCTATAGCT 57.564 40.909 43.81 33.17 46.53 3.32
1930 2484 4.017380 TCTAAATAGCGCGCTATAGCTC 57.983 45.455 43.81 13.77 43.44 4.09
1931 2485 1.997669 AAATAGCGCGCTATAGCTCC 58.002 50.000 43.81 10.26 43.44 4.70
1932 2486 0.179161 AATAGCGCGCTATAGCTCCG 60.179 55.000 43.81 22.32 43.44 4.63
1935 2489 2.868196 CGCGCTATAGCTCCGCTA 59.132 61.111 21.98 0.00 45.55 4.26
1943 2497 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
1944 2498 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
1945 2499 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
1946 2500 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
1947 2501 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
1956 2510 6.951256 CTATAGCACGCTATAGCATTTGAA 57.049 37.500 25.42 9.81 46.26 2.69
1957 2511 7.351414 CTATAGCACGCTATAGCATTTGAAA 57.649 36.000 25.42 9.51 46.26 2.69
1958 2512 4.542662 AGCACGCTATAGCATTTGAAAG 57.457 40.909 23.99 7.87 42.21 2.62
1959 2513 4.191544 AGCACGCTATAGCATTTGAAAGA 58.808 39.130 23.99 0.00 42.21 2.52
1960 2514 4.272018 AGCACGCTATAGCATTTGAAAGAG 59.728 41.667 23.99 6.48 42.21 2.85
1961 2515 4.553547 GCACGCTATAGCATTTGAAAGAGG 60.554 45.833 23.99 5.98 42.21 3.69
1962 2516 4.572389 CACGCTATAGCATTTGAAAGAGGT 59.428 41.667 23.99 6.60 42.21 3.85
1963 2517 4.811557 ACGCTATAGCATTTGAAAGAGGTC 59.188 41.667 23.99 0.00 42.21 3.85
1964 2518 4.212214 CGCTATAGCATTTGAAAGAGGTCC 59.788 45.833 23.99 0.00 42.21 4.46
1965 2519 4.212214 GCTATAGCATTTGAAAGAGGTCCG 59.788 45.833 20.01 0.00 41.59 4.79
1966 2520 1.168714 AGCATTTGAAAGAGGTCCGC 58.831 50.000 0.00 0.00 0.00 5.54
1967 2521 0.171231 GCATTTGAAAGAGGTCCGCC 59.829 55.000 0.00 0.00 0.00 6.13
1968 2522 0.447801 CATTTGAAAGAGGTCCGCCG 59.552 55.000 0.00 0.00 40.50 6.46
1969 2523 1.305930 ATTTGAAAGAGGTCCGCCGC 61.306 55.000 0.00 0.00 40.50 6.53
1971 2525 1.537814 TTGAAAGAGGTCCGCCGCTA 61.538 55.000 0.00 0.00 44.34 4.26
1972 2526 1.217244 GAAAGAGGTCCGCCGCTAA 59.783 57.895 0.00 0.00 44.34 3.09
1973 2527 0.806492 GAAAGAGGTCCGCCGCTAAG 60.806 60.000 0.00 0.00 44.34 2.18
1974 2528 1.255667 AAAGAGGTCCGCCGCTAAGA 61.256 55.000 0.00 0.00 44.34 2.10
1975 2529 1.043673 AAGAGGTCCGCCGCTAAGAT 61.044 55.000 0.00 0.00 44.34 2.40
1976 2530 1.300233 GAGGTCCGCCGCTAAGATG 60.300 63.158 0.00 0.00 40.50 2.90
1977 2531 2.967615 GGTCCGCCGCTAAGATGC 60.968 66.667 0.00 0.00 0.00 3.91
1978 2532 2.107141 GTCCGCCGCTAAGATGCT 59.893 61.111 0.00 0.00 0.00 3.79
1979 2533 1.521681 GTCCGCCGCTAAGATGCTT 60.522 57.895 0.00 0.00 0.00 3.91
1980 2534 0.249322 GTCCGCCGCTAAGATGCTTA 60.249 55.000 0.00 0.00 0.00 3.09
1981 2535 0.032130 TCCGCCGCTAAGATGCTTAG 59.968 55.000 9.30 9.30 0.00 2.18
1982 2536 1.560860 CCGCCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
1986 2540 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
1987 2541 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
1988 2542 0.506080 CTAAGATGCTTAGCGCGCTG 59.494 55.000 41.85 27.73 43.27 5.18
1989 2543 0.179111 TAAGATGCTTAGCGCGCTGT 60.179 50.000 41.85 21.52 43.27 4.40
1990 2544 1.021390 AAGATGCTTAGCGCGCTGTT 61.021 50.000 41.85 20.69 43.27 3.16
1991 2545 1.021390 AGATGCTTAGCGCGCTGTTT 61.021 50.000 41.85 21.98 43.27 2.83
1992 2546 0.650512 GATGCTTAGCGCGCTGTTTA 59.349 50.000 41.85 25.38 43.27 2.01
1993 2547 1.062002 GATGCTTAGCGCGCTGTTTAA 59.938 47.619 41.85 26.89 43.27 1.52
1994 2548 0.869068 TGCTTAGCGCGCTGTTTAAA 59.131 45.000 41.85 26.51 43.27 1.52
1995 2549 1.264557 TGCTTAGCGCGCTGTTTAAAA 59.735 42.857 41.85 25.77 43.27 1.52
1996 2550 1.642360 GCTTAGCGCGCTGTTTAAAAC 59.358 47.619 41.85 20.06 0.00 2.43
1997 2551 2.664698 GCTTAGCGCGCTGTTTAAAACT 60.665 45.455 41.85 15.79 0.00 2.66
1998 2552 3.423907 GCTTAGCGCGCTGTTTAAAACTA 60.424 43.478 41.85 16.73 0.00 2.24
1999 2553 4.726876 GCTTAGCGCGCTGTTTAAAACTAT 60.727 41.667 41.85 15.00 0.00 2.12
2000 2554 3.117434 AGCGCGCTGTTTAAAACTATG 57.883 42.857 36.13 0.00 0.00 2.23
2001 2555 1.577578 GCGCGCTGTTTAAAACTATGC 59.422 47.619 26.67 0.00 0.00 3.14
2002 2556 1.831812 CGCGCTGTTTAAAACTATGCG 59.168 47.619 5.56 13.38 43.31 4.73
2032 2586 4.082081 TGAGGCCTGAATTGCAAGTTTATG 60.082 41.667 12.00 0.00 0.00 1.90
2076 2631 9.467258 CATGTCAAATTTTGTTACTGAAGTGAT 57.533 29.630 8.89 0.00 0.00 3.06
2081 2636 9.132521 CAAATTTTGTTACTGAAGTGATCATCC 57.867 33.333 0.00 0.00 37.44 3.51
2104 2659 6.435591 TCCACATCATATATGTCCAGAGAGAC 59.564 42.308 12.42 0.00 37.28 3.36
2140 2715 4.046462 CACACTGAAATGAAGCAACCAAG 58.954 43.478 0.00 0.00 0.00 3.61
2206 2792 7.970061 TCAGTTTTCAGAGTGTTGAATTTTCAG 59.030 33.333 0.00 0.00 38.61 3.02
2240 2826 8.034215 TCAGTTTTCAGTGTGTTGAATTTTCAT 58.966 29.630 0.00 0.00 36.97 2.57
2254 2868 7.572523 TGAATTTTCATGTCTTCAGAGTGTT 57.427 32.000 0.00 0.00 31.01 3.32
2276 2890 3.801050 TGTTTTGCAAATGAACACCGATG 59.199 39.130 13.65 0.00 0.00 3.84
2304 2919 9.868277 CAGCAGTTATCAAAATAAATGGGTTAA 57.132 29.630 7.47 0.00 41.50 2.01
2417 3049 2.472723 GCAGCGGCATTTCGAATTTTTG 60.473 45.455 3.18 0.00 40.72 2.44
2424 3057 6.672836 GCGGCATTTCGAATTTTTGATTGAAT 60.673 34.615 0.00 0.00 0.00 2.57
2448 3081 7.987268 TTGATAGTTATCGTACTGAAGCTTG 57.013 36.000 2.10 0.00 35.48 4.01
2550 3184 8.050778 TCAGTGTCAGTTTACATTCAGTTTTT 57.949 30.769 0.00 0.00 0.00 1.94
2558 3192 3.733443 ACATTCAGTTTTTCAGGGTGC 57.267 42.857 0.00 0.00 0.00 5.01
2567 3201 6.097554 TCAGTTTTTCAGGGTGCTGAATTTTA 59.902 34.615 0.00 0.00 42.14 1.52
2594 3228 5.270083 TCAACTTCATAGTGTTGTTTTGCG 58.730 37.500 0.00 0.00 42.71 4.85
2601 3235 6.556212 TCATAGTGTTGTTTTGCGAAAGAAA 58.444 32.000 10.39 0.97 30.87 2.52
2604 3238 5.227152 AGTGTTGTTTTGCGAAAGAAAACT 58.773 33.333 21.17 21.17 40.09 2.66
2619 3253 7.201376 CGAAAGAAAACTGATATCGACCGTTAA 60.201 37.037 0.00 0.00 0.00 2.01
2620 3254 6.882458 AGAAAACTGATATCGACCGTTAAC 57.118 37.500 0.00 0.00 0.00 2.01
2625 3260 6.642683 ACTGATATCGACCGTTAACAAAAG 57.357 37.500 6.39 0.00 0.00 2.27
2626 3261 6.161381 ACTGATATCGACCGTTAACAAAAGT 58.839 36.000 6.39 0.00 0.00 2.66
2627 3262 6.647895 ACTGATATCGACCGTTAACAAAAGTT 59.352 34.615 6.39 0.00 0.00 2.66
2628 3263 7.172019 ACTGATATCGACCGTTAACAAAAGTTT 59.828 33.333 6.39 0.00 0.00 2.66
2639 3289 7.279090 CCGTTAACAAAAGTTTTGGAATTTCCT 59.721 33.333 27.46 5.78 37.46 3.36
2646 3296 7.533289 AAAGTTTTGGAATTTCCTAATCCGA 57.467 32.000 16.25 0.00 37.46 4.55
2665 3315 2.733227 CGACTGGGCTTGAAATGCATTC 60.733 50.000 13.38 7.13 39.01 2.67
2794 3447 1.212935 ACAGGCCACCATAGTTCATCC 59.787 52.381 5.01 0.00 0.00 3.51
2795 3448 0.469917 AGGCCACCATAGTTCATCCG 59.530 55.000 5.01 0.00 0.00 4.18
2807 3460 4.830826 AGTTCATCCGAAAAGGTTTGAC 57.169 40.909 0.00 0.00 41.99 3.18
2808 3461 4.204012 AGTTCATCCGAAAAGGTTTGACA 58.796 39.130 0.00 0.00 41.99 3.58
2889 3609 1.227793 GAGGGAGTATGCTGCAGCC 60.228 63.158 34.64 20.05 41.18 4.85
2972 3711 7.009174 CACACGAATGTTTGTTCTTTTTAGCTT 59.991 33.333 0.00 0.00 36.72 3.74
2996 3778 5.815222 TGATTGTTGGTACATTGATACTCCG 59.185 40.000 0.00 0.00 39.30 4.63
3036 3818 2.368011 AAAGCTACCTCCCCTCGCC 61.368 63.158 0.00 0.00 0.00 5.54
3074 3856 2.161855 TGCTTTCGCCATCTTGACATT 58.838 42.857 0.00 0.00 34.43 2.71
3081 3863 2.159476 CGCCATCTTGACATTGTCTTGG 60.159 50.000 17.26 17.15 33.15 3.61
3088 3870 4.338118 TCTTGACATTGTCTTGGGTTGTTC 59.662 41.667 17.26 0.00 33.15 3.18
3135 3939 0.473755 AACACACTGGACATGGCAGA 59.526 50.000 0.00 0.00 0.00 4.26
3153 3957 0.540923 GATGGAGAGAGCAAGCTGGT 59.459 55.000 0.00 0.00 0.00 4.00
3193 3997 2.114616 CATGAGCTGGAGAAGGTAGGT 58.885 52.381 0.00 0.00 36.52 3.08
3268 4073 4.978580 GTGCTGAATTTTCACCTCAACTTC 59.021 41.667 0.00 0.00 32.90 3.01
3277 4082 2.034685 TCACCTCAACTTCAGAGTGTCG 59.965 50.000 0.00 0.00 35.91 4.35
3278 4083 1.269831 ACCTCAACTTCAGAGTGTCGC 60.270 52.381 0.00 0.00 35.91 5.19
3279 4084 1.056103 CTCAACTTCAGAGTGTCGCG 58.944 55.000 0.00 0.00 35.91 5.87
3280 4085 0.318699 TCAACTTCAGAGTGTCGCGG 60.319 55.000 6.13 0.00 35.91 6.46
3282 4087 0.104304 AACTTCAGAGTGTCGCGGTT 59.896 50.000 6.13 0.00 35.91 4.44
3284 4089 1.544691 ACTTCAGAGTGTCGCGGTTAT 59.455 47.619 6.13 0.00 33.99 1.89
3398 4231 2.102757 ACATATGCTCAGAGAGGCAGTG 59.897 50.000 0.00 0.00 41.88 3.66
3478 4315 9.852091 CAATGTCGAATTCAGATCATCTATCTA 57.148 33.333 6.22 0.00 43.42 1.98
3646 4713 8.802856 GCTAGATTATCGCTACATTCATAACTG 58.197 37.037 0.00 0.00 0.00 3.16
3654 4721 5.419542 GCTACATTCATAACTGACAGACCA 58.580 41.667 10.08 0.00 0.00 4.02
3685 4752 2.951642 CCGCAATATGACCCTGTTCATT 59.048 45.455 0.00 0.00 37.42 2.57
3747 4818 0.804989 GGGTGCTTTGGAGATCAACG 59.195 55.000 0.00 0.00 34.67 4.10
3756 4827 0.598680 GGAGATCAACGCATCGGAGG 60.599 60.000 0.00 0.00 0.00 4.30
3877 4948 6.915544 TCTGCATCAAATTCTTAGTAGCTG 57.084 37.500 0.00 0.00 0.00 4.24
3878 4949 6.643388 TCTGCATCAAATTCTTAGTAGCTGA 58.357 36.000 0.00 0.00 0.00 4.26
3879 4950 6.536582 TCTGCATCAAATTCTTAGTAGCTGAC 59.463 38.462 0.00 0.00 0.00 3.51
3881 4952 6.314648 TGCATCAAATTCTTAGTAGCTGACTG 59.685 38.462 0.00 0.00 39.39 3.51
3887 4973 5.977489 TTCTTAGTAGCTGACTGTGCTAA 57.023 39.130 0.00 0.00 43.50 3.09
3981 5070 2.485657 GGGATAAAGCCCTAGTGCTCAC 60.486 54.545 0.00 0.00 45.12 3.51
4199 5288 5.451354 TGGTTCAGGTAAAAGTAAAAGCCT 58.549 37.500 0.00 0.00 0.00 4.58
4200 5289 5.894964 TGGTTCAGGTAAAAGTAAAAGCCTT 59.105 36.000 0.00 0.00 0.00 4.35
4202 5291 6.921857 GGTTCAGGTAAAAGTAAAAGCCTTTC 59.078 38.462 0.00 0.00 31.11 2.62
4242 5366 3.507162 TGCTCTGTTTTCCTCATTGGA 57.493 42.857 0.00 0.00 44.51 3.53
4305 5429 7.336161 TGATGATGATAATGTGCAAATGTGA 57.664 32.000 0.00 0.00 0.00 3.58
4324 5448 3.319122 GTGAAGGGTTTTGAGAACATGCT 59.681 43.478 0.00 0.00 0.00 3.79
4335 5459 3.519107 TGAGAACATGCTGATTAGTGGGA 59.481 43.478 0.00 0.00 0.00 4.37
4392 5522 3.784845 GAAAATCCTTTTCGCGCCA 57.215 47.368 0.00 0.00 39.56 5.69
4532 5667 8.138712 GTCGATGAAGAAGATAAGGTGTCTATT 58.861 37.037 0.00 0.00 0.00 1.73
4654 5790 2.643551 TCCAATACTAAGCAAGCTGCC 58.356 47.619 0.00 0.00 46.52 4.85
4655 5791 2.026356 TCCAATACTAAGCAAGCTGCCA 60.026 45.455 0.00 0.00 46.52 4.92
4728 5864 3.377485 GCTCAACGAGTATAGTCCTGACA 59.623 47.826 1.88 0.00 31.39 3.58
4772 5908 2.926242 AACTTCCGGGAAGGGCGA 60.926 61.111 33.73 2.72 43.25 5.54
5013 6176 6.831868 GGTTTGCTTCCTAATAATAACTGGGA 59.168 38.462 0.00 0.00 0.00 4.37
5051 6217 7.740805 TGGCCTTAAAACACCTAATGAAATTT 58.259 30.769 3.32 0.00 37.87 1.82
5145 6312 1.000827 AGTTCATATCTCTCAGCGCCG 60.001 52.381 2.29 0.00 0.00 6.46
5160 6327 2.613506 GCCGAACGAAACTGGGGTG 61.614 63.158 0.00 0.00 0.00 4.61
5165 6332 0.469144 AACGAAACTGGGGTGCCATT 60.469 50.000 0.00 0.00 0.00 3.16
5167 6334 0.038343 CGAAACTGGGGTGCCATTTG 60.038 55.000 0.00 0.00 0.00 2.32
5225 6394 4.949856 AGAGAACACACACAAAGTCCAAAT 59.050 37.500 0.00 0.00 0.00 2.32
5286 6456 6.652053 TGTGATCATCAGATGGATTAACACA 58.348 36.000 10.67 9.18 37.25 3.72
5299 6469 4.449068 GGATTAACACATCGCCACTCTATG 59.551 45.833 0.00 0.00 0.00 2.23
5303 6473 0.031314 ACATCGCCACTCTATGCTCG 59.969 55.000 0.00 0.00 0.00 5.03
5371 6541 2.867624 TGCACAGAATCCTCAAGCTTT 58.132 42.857 0.00 0.00 0.00 3.51
5389 6560 3.306225 GCTTTTGGATGTTCAGCAATCCA 60.306 43.478 0.23 0.23 41.05 3.41
5467 6666 8.156820 CACTGGATTTGGACCTGAACATATATA 58.843 37.037 0.00 0.00 0.00 0.86
5468 6667 8.894592 ACTGGATTTGGACCTGAACATATATAT 58.105 33.333 0.00 0.00 0.00 0.86
5469 6668 9.745018 CTGGATTTGGACCTGAACATATATATT 57.255 33.333 0.00 0.00 0.00 1.28
5470 6669 9.519191 TGGATTTGGACCTGAACATATATATTG 57.481 33.333 0.00 0.00 0.00 1.90
5671 6875 6.957920 ATAGCGCTAGAGATATCATGTCAT 57.042 37.500 23.37 0.00 0.00 3.06
5704 6917 7.832769 TGCTTCAAACTAAACTTTACAAAGGT 58.167 30.769 6.66 0.00 40.31 3.50
5710 6923 9.292846 CAAACTAAACTTTACAAAGGTTACACC 57.707 33.333 7.89 0.00 43.71 4.16
5716 6929 6.362248 ACTTTACAAAGGTTACACCATCACT 58.638 36.000 6.66 0.00 41.95 3.41
5803 7026 2.951229 TCAGAAACTTGGGGAACTCC 57.049 50.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
381 384 0.034380 AGGAGGAGATGAACGTCCGA 60.034 55.000 0.00 0.00 44.03 4.55
514 559 1.877443 CAAACCCTAACCACTTCACCG 59.123 52.381 0.00 0.00 0.00 4.94
668 728 1.202722 TCAAACGGGTCTCAAACTCCC 60.203 52.381 0.00 0.00 37.98 4.30
696 757 4.217550 GGGTCACAAAATTTCGATCCAGAA 59.782 41.667 8.80 0.00 0.00 3.02
757 819 1.971505 TAAGAGCATCCACAGCCGGG 61.972 60.000 2.18 0.00 33.66 5.73
758 820 0.107703 TTAAGAGCATCCACAGCCGG 60.108 55.000 0.00 0.00 33.66 6.13
759 821 1.293924 CTTAAGAGCATCCACAGCCG 58.706 55.000 0.00 0.00 33.66 5.52
771 833 3.305398 AGTCCACGTGAAGCTTAAGAG 57.695 47.619 19.30 0.00 0.00 2.85
772 834 3.746045 AAGTCCACGTGAAGCTTAAGA 57.254 42.857 19.30 0.00 0.00 2.10
773 835 3.678548 GGTAAGTCCACGTGAAGCTTAAG 59.321 47.826 19.30 0.00 35.97 1.85
774 836 3.069872 TGGTAAGTCCACGTGAAGCTTAA 59.930 43.478 19.30 5.74 41.93 1.85
776 838 1.414919 TGGTAAGTCCACGTGAAGCTT 59.585 47.619 19.30 18.51 41.93 3.74
778 840 1.000506 TCTGGTAAGTCCACGTGAAGC 59.999 52.381 19.30 6.49 41.93 3.86
779 841 2.609737 GGTCTGGTAAGTCCACGTGAAG 60.610 54.545 19.30 0.34 41.93 3.02
780 842 1.342174 GGTCTGGTAAGTCCACGTGAA 59.658 52.381 19.30 0.00 41.93 3.18
782 844 0.966920 AGGTCTGGTAAGTCCACGTG 59.033 55.000 9.08 9.08 41.93 4.49
783 845 1.617357 GAAGGTCTGGTAAGTCCACGT 59.383 52.381 0.00 0.00 41.93 4.49
784 846 1.893801 AGAAGGTCTGGTAAGTCCACG 59.106 52.381 0.00 0.00 41.93 4.94
787 849 4.505808 GCTTAAGAAGGTCTGGTAAGTCC 58.494 47.826 6.67 0.00 32.27 3.85
788 850 4.174762 CGCTTAAGAAGGTCTGGTAAGTC 58.825 47.826 6.67 0.00 0.00 3.01
791 853 4.612264 AACGCTTAAGAAGGTCTGGTAA 57.388 40.909 6.67 0.00 0.00 2.85
792 854 5.012239 TCTAACGCTTAAGAAGGTCTGGTA 58.988 41.667 6.67 0.00 0.00 3.25
794 856 4.451629 TCTAACGCTTAAGAAGGTCTGG 57.548 45.455 6.67 0.00 0.00 3.86
839 901 7.731054 TCCAAAGCCTTTTCTTTTTAGCATAA 58.269 30.769 0.00 0.00 34.31 1.90
848 910 7.415541 GCATTTCTTTTCCAAAGCCTTTTCTTT 60.416 33.333 0.00 0.00 36.78 2.52
856 1176 3.495753 CAGTGCATTTCTTTTCCAAAGCC 59.504 43.478 0.00 0.00 0.00 4.35
900 1220 5.881777 TTGCACTCTCTGTAGTACTAGTG 57.118 43.478 14.32 14.32 37.87 2.74
915 1250 2.092429 TGGGTAGGATGGATTTGCACTC 60.092 50.000 0.00 0.00 0.00 3.51
1327 1850 4.020617 CCTCCTCGCACCTTGCCA 62.021 66.667 0.00 0.00 41.12 4.92
1416 1955 2.792890 CGAGCTCACTACGACCAATCTG 60.793 54.545 15.40 0.00 0.00 2.90
1428 1967 5.981088 ATCAGATCATTATCGAGCTCACT 57.019 39.130 15.40 2.13 37.19 3.41
1458 1999 7.033530 ACGAACCAACAAGATTAACATTTGA 57.966 32.000 0.00 0.00 0.00 2.69
1478 2019 2.235891 TCAGCTCTGACAGGTAACGAA 58.764 47.619 1.81 0.00 36.64 3.85
1480 2021 2.164422 TCATCAGCTCTGACAGGTAACG 59.836 50.000 1.81 0.00 43.11 3.18
1489 2030 5.835280 TGTTAGATATGGTCATCAGCTCTGA 59.165 40.000 1.67 1.67 44.59 3.27
1499 2040 6.326323 TGGTATGAGCTTGTTAGATATGGTCA 59.674 38.462 0.00 0.00 39.05 4.02
1502 2043 5.641209 GCTGGTATGAGCTTGTTAGATATGG 59.359 44.000 0.00 0.00 35.95 2.74
1510 2051 2.076863 GAACGCTGGTATGAGCTTGTT 58.923 47.619 0.00 0.00 36.77 2.83
1513 2054 2.076863 GTTGAACGCTGGTATGAGCTT 58.923 47.619 0.00 0.00 36.77 3.74
1516 2057 2.413112 CACAGTTGAACGCTGGTATGAG 59.587 50.000 0.00 0.00 38.22 2.90
1526 2067 1.350193 CGGATCCTCACAGTTGAACG 58.650 55.000 10.75 0.00 0.00 3.95
1530 2071 0.176680 CCTCCGGATCCTCACAGTTG 59.823 60.000 3.57 0.00 0.00 3.16
1651 2192 3.056322 AGTTCAGGAAAGAAATGGCATGC 60.056 43.478 9.90 9.90 0.00 4.06
1665 2210 5.489792 AGACAGCATTTTAGAGTTCAGGA 57.510 39.130 0.00 0.00 0.00 3.86
1755 2301 8.469309 TTTGTTAGGTACTGTACTGAACTACT 57.531 34.615 23.29 12.94 41.52 2.57
1784 2338 3.057526 TCATCCGACATTAGCATCCGTAG 60.058 47.826 0.00 0.00 0.00 3.51
1806 2360 2.163613 GCGGGCTATTTAAAACAGTGCT 59.836 45.455 0.00 0.00 0.00 4.40
1808 2362 5.751243 ATAGCGGGCTATTTAAAACAGTG 57.249 39.130 7.36 0.00 35.92 3.66
1809 2363 5.469084 GCTATAGCGGGCTATTTAAAACAGT 59.531 40.000 17.49 0.00 39.65 3.55
1810 2364 5.928153 GCTATAGCGGGCTATTTAAAACAG 58.072 41.667 17.49 8.76 39.65 3.16
1832 2386 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
1833 2387 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1847 2401 7.070183 GCAAGACCTTTTATAAACGCTATAGC 58.930 38.462 15.09 15.09 37.78 2.97
1848 2402 7.281484 CGCAAGACCTTTTATAAACGCTATAG 58.719 38.462 0.00 0.00 43.02 1.31
1849 2403 6.292488 GCGCAAGACCTTTTATAAACGCTATA 60.292 38.462 0.30 0.00 39.52 1.31
1850 2404 5.503520 GCGCAAGACCTTTTATAAACGCTAT 60.504 40.000 0.30 0.00 39.52 2.97
1851 2405 4.201744 GCGCAAGACCTTTTATAAACGCTA 60.202 41.667 0.30 0.00 39.52 4.26
1852 2406 3.425758 GCGCAAGACCTTTTATAAACGCT 60.426 43.478 0.30 1.99 39.52 5.07
1853 2407 2.844223 GCGCAAGACCTTTTATAAACGC 59.156 45.455 0.30 9.00 43.02 4.84
1854 2408 4.336532 AGCGCAAGACCTTTTATAAACG 57.663 40.909 11.47 0.00 43.02 3.60
1855 2409 7.064253 TCTCTTAGCGCAAGACCTTTTATAAAC 59.936 37.037 11.47 0.00 38.39 2.01
1856 2410 7.064253 GTCTCTTAGCGCAAGACCTTTTATAAA 59.936 37.037 11.47 0.00 38.39 1.40
1857 2411 6.534079 GTCTCTTAGCGCAAGACCTTTTATAA 59.466 38.462 11.47 0.00 38.39 0.98
1858 2412 6.040878 GTCTCTTAGCGCAAGACCTTTTATA 58.959 40.000 11.47 0.00 38.39 0.98
1859 2413 4.870991 GTCTCTTAGCGCAAGACCTTTTAT 59.129 41.667 11.47 0.00 38.39 1.40
1860 2414 4.021368 AGTCTCTTAGCGCAAGACCTTTTA 60.021 41.667 21.13 0.00 40.21 1.52
1861 2415 3.067833 GTCTCTTAGCGCAAGACCTTTT 58.932 45.455 11.47 0.00 38.39 2.27
1862 2416 2.300437 AGTCTCTTAGCGCAAGACCTTT 59.700 45.455 21.13 7.34 40.21 3.11
1863 2417 1.896465 AGTCTCTTAGCGCAAGACCTT 59.104 47.619 21.13 7.87 40.21 3.50
1864 2418 1.551452 AGTCTCTTAGCGCAAGACCT 58.449 50.000 21.13 14.93 40.21 3.85
1865 2419 2.371910 AAGTCTCTTAGCGCAAGACC 57.628 50.000 21.13 13.52 40.21 3.85
1866 2420 3.318017 TCAAAGTCTCTTAGCGCAAGAC 58.682 45.455 11.47 16.26 38.39 3.01
1867 2421 3.660501 TCAAAGTCTCTTAGCGCAAGA 57.339 42.857 11.47 15.40 41.10 3.02
1868 2422 3.308323 GGATCAAAGTCTCTTAGCGCAAG 59.692 47.826 11.47 11.67 35.38 4.01
1869 2423 3.262420 GGATCAAAGTCTCTTAGCGCAA 58.738 45.455 11.47 0.50 0.00 4.85
1870 2424 2.233676 TGGATCAAAGTCTCTTAGCGCA 59.766 45.455 11.47 0.00 0.00 6.09
1871 2425 2.893637 TGGATCAAAGTCTCTTAGCGC 58.106 47.619 0.00 0.00 0.00 5.92
1872 2426 4.690748 TGTTTGGATCAAAGTCTCTTAGCG 59.309 41.667 0.00 0.00 33.82 4.26
1873 2427 6.560253 TTGTTTGGATCAAAGTCTCTTAGC 57.440 37.500 0.00 0.00 33.82 3.09
1876 2430 9.750125 GTTAATTTGTTTGGATCAAAGTCTCTT 57.250 29.630 0.00 0.00 38.02 2.85
1877 2431 8.912988 TGTTAATTTGTTTGGATCAAAGTCTCT 58.087 29.630 0.00 0.00 38.02 3.10
1878 2432 9.528018 TTGTTAATTTGTTTGGATCAAAGTCTC 57.472 29.630 0.00 0.00 38.02 3.36
1879 2433 9.883142 TTTGTTAATTTGTTTGGATCAAAGTCT 57.117 25.926 0.00 0.00 38.02 3.24
1880 2434 9.914923 GTTTGTTAATTTGTTTGGATCAAAGTC 57.085 29.630 0.00 0.00 38.02 3.01
1881 2435 9.442047 TGTTTGTTAATTTGTTTGGATCAAAGT 57.558 25.926 0.00 0.00 38.02 2.66
1885 2439 9.829507 AGAATGTTTGTTAATTTGTTTGGATCA 57.170 25.926 0.00 0.00 0.00 2.92
1894 2448 9.885743 GCGCTATTTAGAATGTTTGTTAATTTG 57.114 29.630 0.00 0.00 0.00 2.32
1895 2449 8.794406 CGCGCTATTTAGAATGTTTGTTAATTT 58.206 29.630 5.56 0.00 0.00 1.82
1896 2450 7.044314 GCGCGCTATTTAGAATGTTTGTTAATT 60.044 33.333 26.67 0.00 0.00 1.40
1897 2451 6.413818 GCGCGCTATTTAGAATGTTTGTTAAT 59.586 34.615 26.67 0.00 0.00 1.40
1898 2452 5.735427 GCGCGCTATTTAGAATGTTTGTTAA 59.265 36.000 26.67 0.00 0.00 2.01
1899 2453 5.064198 AGCGCGCTATTTAGAATGTTTGTTA 59.936 36.000 35.79 0.00 0.00 2.41
1900 2454 4.095610 GCGCGCTATTTAGAATGTTTGTT 58.904 39.130 26.67 0.00 0.00 2.83
1901 2455 3.374058 AGCGCGCTATTTAGAATGTTTGT 59.626 39.130 35.79 0.63 0.00 2.83
1902 2456 3.940303 AGCGCGCTATTTAGAATGTTTG 58.060 40.909 35.79 0.00 0.00 2.93
1903 2457 5.924475 ATAGCGCGCTATTTAGAATGTTT 57.076 34.783 40.32 20.33 35.92 2.83
1904 2458 5.062308 GCTATAGCGCGCTATTTAGAATGTT 59.938 40.000 46.76 28.22 39.65 2.71
1905 2459 4.563184 GCTATAGCGCGCTATTTAGAATGT 59.437 41.667 46.76 28.88 39.65 2.71
1906 2460 5.059660 GCTATAGCGCGCTATTTAGAATG 57.940 43.478 46.76 29.61 39.65 2.67
1927 2481 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
1928 2482 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1934 2488 7.151976 TCTTTCAAATGCTATAGCGTGCTATA 58.848 34.615 20.02 17.96 45.83 1.31
1935 2489 5.991606 TCTTTCAAATGCTATAGCGTGCTAT 59.008 36.000 20.02 17.65 45.83 2.97
1936 2490 5.356426 TCTTTCAAATGCTATAGCGTGCTA 58.644 37.500 20.02 3.73 45.83 3.49
1937 2491 4.191544 TCTTTCAAATGCTATAGCGTGCT 58.808 39.130 20.02 7.98 45.83 4.40
1938 2492 4.521943 CTCTTTCAAATGCTATAGCGTGC 58.478 43.478 20.02 0.00 45.83 5.34
1939 2493 4.572389 ACCTCTTTCAAATGCTATAGCGTG 59.428 41.667 20.02 16.47 45.83 5.34
1940 2494 4.770795 ACCTCTTTCAAATGCTATAGCGT 58.229 39.130 19.55 16.84 45.83 5.07
1941 2495 4.212214 GGACCTCTTTCAAATGCTATAGCG 59.788 45.833 19.55 5.67 45.83 4.26
1942 2496 4.212214 CGGACCTCTTTCAAATGCTATAGC 59.788 45.833 18.18 18.18 42.50 2.97
1943 2497 4.212214 GCGGACCTCTTTCAAATGCTATAG 59.788 45.833 0.00 0.00 0.00 1.31
1944 2498 4.127171 GCGGACCTCTTTCAAATGCTATA 58.873 43.478 0.00 0.00 0.00 1.31
1945 2499 2.945668 GCGGACCTCTTTCAAATGCTAT 59.054 45.455 0.00 0.00 0.00 2.97
1946 2500 2.356135 GCGGACCTCTTTCAAATGCTA 58.644 47.619 0.00 0.00 0.00 3.49
1947 2501 1.168714 GCGGACCTCTTTCAAATGCT 58.831 50.000 0.00 0.00 0.00 3.79
1948 2502 0.171231 GGCGGACCTCTTTCAAATGC 59.829 55.000 0.00 0.00 0.00 3.56
1949 2503 0.447801 CGGCGGACCTCTTTCAAATG 59.552 55.000 0.00 0.00 0.00 2.32
1950 2504 1.305930 GCGGCGGACCTCTTTCAAAT 61.306 55.000 9.78 0.00 0.00 2.32
1951 2505 1.964373 GCGGCGGACCTCTTTCAAA 60.964 57.895 9.78 0.00 0.00 2.69
1952 2506 1.537814 TAGCGGCGGACCTCTTTCAA 61.538 55.000 9.78 0.00 31.87 2.69
1953 2507 1.537814 TTAGCGGCGGACCTCTTTCA 61.538 55.000 9.78 0.00 31.87 2.69
1954 2508 0.806492 CTTAGCGGCGGACCTCTTTC 60.806 60.000 9.78 0.00 31.87 2.62
1955 2509 1.218316 CTTAGCGGCGGACCTCTTT 59.782 57.895 9.78 0.00 31.87 2.52
1956 2510 1.043673 ATCTTAGCGGCGGACCTCTT 61.044 55.000 9.78 0.00 31.87 2.85
1957 2511 1.455959 ATCTTAGCGGCGGACCTCT 60.456 57.895 9.78 0.00 34.60 3.69
1958 2512 1.300233 CATCTTAGCGGCGGACCTC 60.300 63.158 9.78 0.00 0.00 3.85
1959 2513 2.815308 CATCTTAGCGGCGGACCT 59.185 61.111 9.78 0.00 0.00 3.85
1960 2514 2.925162 AAGCATCTTAGCGGCGGACC 62.925 60.000 9.78 0.00 40.15 4.46
1961 2515 0.249322 TAAGCATCTTAGCGGCGGAC 60.249 55.000 9.78 0.00 40.15 4.79
1962 2516 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.000 9.78 0.00 40.15 5.54
1963 2517 1.560860 GCTAAGCATCTTAGCGGCGG 61.561 60.000 18.95 0.00 38.12 6.13
1964 2518 1.856012 GCTAAGCATCTTAGCGGCG 59.144 57.895 18.95 0.51 38.12 6.46
1976 2530 1.642360 GTTTTAAACAGCGCGCTAAGC 59.358 47.619 36.02 21.73 43.95 3.09
1977 2531 3.183237 AGTTTTAAACAGCGCGCTAAG 57.817 42.857 36.02 25.15 0.00 2.18
1978 2532 4.643953 CATAGTTTTAAACAGCGCGCTAA 58.356 39.130 36.02 22.12 0.00 3.09
1979 2533 3.484557 GCATAGTTTTAAACAGCGCGCTA 60.485 43.478 36.02 16.53 0.00 4.26
1980 2534 2.727916 GCATAGTTTTAAACAGCGCGCT 60.728 45.455 31.32 31.32 0.00 5.92
1981 2535 1.577578 GCATAGTTTTAAACAGCGCGC 59.422 47.619 26.66 26.66 0.00 6.86
1982 2536 1.831812 CGCATAGTTTTAAACAGCGCG 59.168 47.619 21.54 19.72 40.46 6.86
1983 2537 2.159626 TCCGCATAGTTTTAAACAGCGC 60.160 45.455 25.10 16.28 43.24 5.92
1984 2538 3.733024 TCCGCATAGTTTTAAACAGCG 57.267 42.857 24.22 24.22 43.77 5.18
1985 2539 5.163754 ACTCATCCGCATAGTTTTAAACAGC 60.164 40.000 10.60 9.64 0.00 4.40
1986 2540 6.092122 TCACTCATCCGCATAGTTTTAAACAG 59.908 38.462 10.60 1.13 0.00 3.16
1987 2541 5.935206 TCACTCATCCGCATAGTTTTAAACA 59.065 36.000 10.60 0.00 0.00 2.83
1988 2542 6.417191 TCACTCATCCGCATAGTTTTAAAC 57.583 37.500 0.00 0.00 0.00 2.01
1989 2543 5.584649 CCTCACTCATCCGCATAGTTTTAAA 59.415 40.000 0.00 0.00 0.00 1.52
1990 2544 5.116180 CCTCACTCATCCGCATAGTTTTAA 58.884 41.667 0.00 0.00 0.00 1.52
1991 2545 4.693283 CCTCACTCATCCGCATAGTTTTA 58.307 43.478 0.00 0.00 0.00 1.52
1992 2546 3.535561 CCTCACTCATCCGCATAGTTTT 58.464 45.455 0.00 0.00 0.00 2.43
1993 2547 2.743183 GCCTCACTCATCCGCATAGTTT 60.743 50.000 0.00 0.00 0.00 2.66
1994 2548 1.202580 GCCTCACTCATCCGCATAGTT 60.203 52.381 0.00 0.00 0.00 2.24
1995 2549 0.390860 GCCTCACTCATCCGCATAGT 59.609 55.000 0.00 0.00 0.00 2.12
1996 2550 0.320247 GGCCTCACTCATCCGCATAG 60.320 60.000 0.00 0.00 0.00 2.23
1997 2551 0.760567 AGGCCTCACTCATCCGCATA 60.761 55.000 0.00 0.00 0.00 3.14
1998 2552 2.068821 AGGCCTCACTCATCCGCAT 61.069 57.895 0.00 0.00 0.00 4.73
1999 2553 2.685017 AGGCCTCACTCATCCGCA 60.685 61.111 0.00 0.00 0.00 5.69
2000 2554 2.202987 CAGGCCTCACTCATCCGC 60.203 66.667 0.00 0.00 0.00 5.54
2001 2555 0.467384 ATTCAGGCCTCACTCATCCG 59.533 55.000 0.00 0.00 0.00 4.18
2002 2556 2.295885 CAATTCAGGCCTCACTCATCC 58.704 52.381 0.00 0.00 0.00 3.51
2032 2586 0.037790 TGCCGCTGTAAATTTTGGGC 60.038 50.000 0.00 3.58 39.48 5.36
2076 2631 6.955851 TCTCTGGACATATATGATGTGGATGA 59.044 38.462 19.63 5.18 31.52 2.92
2081 2636 7.039853 ACTGTCTCTCTGGACATATATGATGTG 60.040 40.741 19.63 6.91 43.94 3.21
2104 2659 3.457234 TCAGTGTGCTCACAAGTTACTG 58.543 45.455 20.16 8.40 46.01 2.74
2105 2660 3.819564 TCAGTGTGCTCACAAGTTACT 57.180 42.857 20.16 0.00 46.01 2.24
2106 2661 4.875544 TTTCAGTGTGCTCACAAGTTAC 57.124 40.909 20.16 0.00 46.01 2.50
2107 2662 5.122519 TCATTTCAGTGTGCTCACAAGTTA 58.877 37.500 20.16 3.02 46.01 2.24
2140 2715 8.654230 TGATGCTAGTTCTAGATGATTTGAAC 57.346 34.615 10.58 0.00 39.06 3.18
2225 2811 7.067372 ACTCTGAAGACATGAAAATTCAACACA 59.933 33.333 0.00 0.00 41.13 3.72
2240 2826 3.755905 TGCAAAACAACACTCTGAAGACA 59.244 39.130 0.00 0.00 0.00 3.41
2254 2868 3.510388 TCGGTGTTCATTTGCAAAACA 57.490 38.095 17.19 13.32 0.00 2.83
2276 2890 7.547227 ACCCATTTATTTTGATAACTGCTGAC 58.453 34.615 0.00 0.00 0.00 3.51
2304 2919 6.372659 ACTTGAGCATTCGACATTGTTATCTT 59.627 34.615 0.00 0.00 0.00 2.40
2396 3028 1.349234 AAAATTCGAAATGCCGCTGC 58.651 45.000 0.00 0.00 38.26 5.25
2424 3057 6.475727 GCAAGCTTCAGTACGATAACTATCAA 59.524 38.462 0.00 0.00 32.98 2.57
2436 3069 2.357637 TGTTGGTTGCAAGCTTCAGTAC 59.642 45.455 27.31 15.60 0.00 2.73
2439 3072 1.134753 TGTGTTGGTTGCAAGCTTCAG 59.865 47.619 27.31 0.00 0.00 3.02
2448 3081 1.627879 CACTGTGTTGTGTTGGTTGC 58.372 50.000 0.00 0.00 33.61 4.17
2550 3184 4.079253 GAGGTTAAAATTCAGCACCCTGA 58.921 43.478 0.00 0.00 46.03 3.86
2558 3192 9.831737 CACTATGAAGTTGAGGTTAAAATTCAG 57.168 33.333 5.47 0.00 42.68 3.02
2567 3201 7.257722 CAAAACAACACTATGAAGTTGAGGTT 58.742 34.615 11.72 1.43 46.01 3.50
2586 3220 6.577055 CGATATCAGTTTTCTTTCGCAAAACA 59.423 34.615 10.77 0.00 43.40 2.83
2594 3228 6.404712 AACGGTCGATATCAGTTTTCTTTC 57.595 37.500 3.12 0.00 0.00 2.62
2601 3235 6.647895 ACTTTTGTTAACGGTCGATATCAGTT 59.352 34.615 3.12 5.93 0.00 3.16
2604 3238 7.424227 AAACTTTTGTTAACGGTCGATATCA 57.576 32.000 3.12 0.00 42.67 2.15
2619 3253 7.655732 CGGATTAGGAAATTCCAAAACTTTTGT 59.344 33.333 15.21 0.00 39.61 2.83
2620 3254 7.870445 TCGGATTAGGAAATTCCAAAACTTTTG 59.130 33.333 15.21 7.21 39.61 2.44
2625 3260 6.322491 CAGTCGGATTAGGAAATTCCAAAAC 58.678 40.000 15.21 3.10 39.61 2.43
2626 3261 5.417580 CCAGTCGGATTAGGAAATTCCAAAA 59.582 40.000 15.21 8.43 39.61 2.44
2627 3262 4.947388 CCAGTCGGATTAGGAAATTCCAAA 59.053 41.667 15.21 0.00 39.61 3.28
2628 3263 4.523083 CCAGTCGGATTAGGAAATTCCAA 58.477 43.478 15.21 7.04 39.61 3.53
2639 3289 3.278574 CATTTCAAGCCCAGTCGGATTA 58.721 45.455 0.00 0.00 38.54 1.75
2646 3296 2.532843 AGAATGCATTTCAAGCCCAGT 58.467 42.857 14.33 0.00 36.75 4.00
2829 3537 9.965824 AAATAAACAAATCTTCAGTGTCGAAAT 57.034 25.926 0.00 0.00 0.00 2.17
2834 3543 8.134895 TGGACAAATAAACAAATCTTCAGTGTC 58.865 33.333 0.00 0.00 0.00 3.67
2889 3609 3.862267 CGGCAGATTTGAGAAGACTACTG 59.138 47.826 0.00 0.00 0.00 2.74
2972 3711 5.815222 CGGAGTATCAATGTACCAACAATCA 59.185 40.000 0.00 0.00 36.35 2.57
3036 3818 1.400500 GCAAACAAACCGGGTCATACG 60.400 52.381 6.32 0.00 0.00 3.06
3074 3856 6.783708 AAACAATAAGAACAACCCAAGACA 57.216 33.333 0.00 0.00 0.00 3.41
3081 3863 5.924254 GCACCCTAAAACAATAAGAACAACC 59.076 40.000 0.00 0.00 0.00 3.77
3088 3870 6.339587 TCCAAAGCACCCTAAAACAATAAG 57.660 37.500 0.00 0.00 0.00 1.73
3135 3939 0.990374 AACCAGCTTGCTCTCTCCAT 59.010 50.000 0.00 0.00 0.00 3.41
3193 3997 9.842775 ATAGAGTTCAGATAAGAAATGCATGAA 57.157 29.630 0.00 0.00 0.00 2.57
3268 4073 4.914312 TTTTTATAACCGCGACACTCTG 57.086 40.909 8.23 0.00 0.00 3.35
3305 4137 0.098552 CAGTGCGCATTCGGCATTAA 59.901 50.000 15.91 0.00 45.17 1.40
3398 4231 1.941668 GCAGGGCAAGTACACTCTGAC 60.942 57.143 12.99 0.00 0.00 3.51
3432 4268 5.637006 TTGTTTAACTCCCACATACATGC 57.363 39.130 0.00 0.00 0.00 4.06
3439 4275 4.074627 TCGACATTGTTTAACTCCCACA 57.925 40.909 0.00 0.00 0.00 4.17
3575 4513 8.966868 TCTAGAGTTTCCACTGAAATTGTTTTT 58.033 29.630 0.00 0.00 42.20 1.94
3646 4713 0.036858 GGTGGAGAGCTTGGTCTGTC 60.037 60.000 7.09 0.82 0.00 3.51
3654 4721 1.486310 TCATATTGCGGTGGAGAGCTT 59.514 47.619 0.00 0.00 0.00 3.74
3694 4761 3.969976 AGGAGAGTTCTGCTAATGCCATA 59.030 43.478 0.93 0.00 43.07 2.74
3699 4766 5.330455 TGTGTAGGAGAGTTCTGCTAATG 57.670 43.478 11.30 0.00 46.14 1.90
3700 4767 6.607600 TGTATGTGTAGGAGAGTTCTGCTAAT 59.392 38.462 11.30 5.56 46.14 1.73
3747 4818 3.083997 ACCTCCCACCTCCGATGC 61.084 66.667 0.00 0.00 0.00 3.91
3756 4827 0.108585 TTGCACTCTTCACCTCCCAC 59.891 55.000 0.00 0.00 0.00 4.61
3877 4948 1.797025 AGGCGAGTTTTAGCACAGTC 58.203 50.000 0.00 0.00 34.54 3.51
3878 4949 1.873591 CAAGGCGAGTTTTAGCACAGT 59.126 47.619 0.00 0.00 34.54 3.55
3879 4950 1.873591 ACAAGGCGAGTTTTAGCACAG 59.126 47.619 0.00 0.00 34.54 3.66
3881 4952 2.159693 GCTACAAGGCGAGTTTTAGCAC 60.160 50.000 9.32 0.00 33.60 4.40
3887 4973 2.037251 TCTCTTGCTACAAGGCGAGTTT 59.963 45.455 7.44 0.00 42.58 2.66
4242 5366 5.013183 ACCTCTAGCAACAATGTAACTCCTT 59.987 40.000 0.00 0.00 0.00 3.36
4305 5429 3.565307 TCAGCATGTTCTCAAAACCCTT 58.435 40.909 0.00 0.00 37.40 3.95
4324 5448 1.895020 AACGGCGCTCCCACTAATCA 61.895 55.000 6.90 0.00 0.00 2.57
4335 5459 1.169661 TTGATTCCAACAACGGCGCT 61.170 50.000 6.90 0.00 0.00 5.92
4389 5519 4.330620 CCTGTATTTCAAATTGCATGTGGC 59.669 41.667 0.00 0.00 45.13 5.01
4390 5520 4.871557 CCCTGTATTTCAAATTGCATGTGG 59.128 41.667 0.00 0.00 0.00 4.17
4391 5521 5.577945 GTCCCTGTATTTCAAATTGCATGTG 59.422 40.000 0.00 0.00 0.00 3.21
4392 5522 5.245751 TGTCCCTGTATTTCAAATTGCATGT 59.754 36.000 0.00 0.00 0.00 3.21
4532 5667 5.840243 CATGAATGCTGTAGGGAAATTGA 57.160 39.130 0.00 0.00 0.00 2.57
4654 5790 2.032054 ACGCTGTCGCCATAATCAAATG 59.968 45.455 0.00 0.00 39.84 2.32
4655 5791 2.287915 GACGCTGTCGCCATAATCAAAT 59.712 45.455 0.00 0.00 39.84 2.32
4728 5864 1.096967 TCATTCATGATGCGCCGCTT 61.097 50.000 11.67 3.10 35.64 4.68
4772 5908 2.549754 CACCTCTGTCATCGTTGCTTTT 59.450 45.455 0.00 0.00 0.00 2.27
4950 6093 1.177401 CAGTCCTCACGAGTCATCCA 58.823 55.000 0.00 0.00 0.00 3.41
4951 6094 1.133407 GACAGTCCTCACGAGTCATCC 59.867 57.143 0.00 0.00 34.44 3.51
4952 6095 1.133407 GGACAGTCCTCACGAGTCATC 59.867 57.143 12.94 0.00 35.39 2.92
5138 6305 2.170985 CAGTTTCGTTCGGCGCTG 59.829 61.111 10.86 10.86 41.07 5.18
5145 6312 0.893727 ATGGCACCCCAGTTTCGTTC 60.894 55.000 0.00 0.00 46.24 3.95
5160 6327 5.293079 TGTTAGTTTTGCAAACTCAAATGGC 59.707 36.000 12.39 0.00 36.04 4.40
5165 6332 6.806249 CAGTCTTGTTAGTTTTGCAAACTCAA 59.194 34.615 12.39 11.84 0.00 3.02
5167 6334 6.469275 GTCAGTCTTGTTAGTTTTGCAAACTC 59.531 38.462 12.39 8.34 0.00 3.01
5225 6394 4.973168 AGATGGTCTGTAGTTTGCTGAAA 58.027 39.130 0.00 0.00 0.00 2.69
5286 6456 0.312416 GTCGAGCATAGAGTGGCGAT 59.688 55.000 0.00 0.00 34.54 4.58
5299 6469 2.285827 ACTATGTTCTGCTGTCGAGC 57.714 50.000 0.00 0.00 46.44 5.03
5303 6473 6.088749 CGATTGCTATACTATGTTCTGCTGTC 59.911 42.308 0.00 0.00 0.00 3.51
5371 6541 3.699413 TCATGGATTGCTGAACATCCAA 58.301 40.909 5.01 0.00 45.18 3.53
5402 6580 7.370383 ACAATTAGCATTTGGTGACTAAAGTG 58.630 34.615 0.00 0.91 33.39 3.16
5468 6667 9.169592 CCTTATTAAGAAATTCGTAAGGTCCAA 57.830 33.333 4.96 3.73 38.47 3.53
5469 6668 7.281549 GCCTTATTAAGAAATTCGTAAGGTCCA 59.718 37.037 19.86 0.00 32.82 4.02
5470 6669 7.281549 TGCCTTATTAAGAAATTCGTAAGGTCC 59.718 37.037 19.86 11.56 32.82 4.46
5665 6869 1.496001 TGAAGCAGCCCCATATGACAT 59.504 47.619 3.65 0.00 0.00 3.06
5671 6875 3.730215 TTAGTTTGAAGCAGCCCCATA 57.270 42.857 0.00 0.00 0.00 2.74
5704 6917 6.605471 AGATACAAGTCAGTGATGGTGTAA 57.395 37.500 14.00 3.30 0.00 2.41
5803 7026 4.720649 TCTCAAGTCCTTCCTTACATCG 57.279 45.455 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.