Multiple sequence alignment - TraesCS3B01G085700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G085700 chr3B 100.000 3980 0 0 1627 5606 54306974 54302995 0.000000e+00 7350
1 TraesCS3B01G085700 chr3B 96.964 1746 52 1 1637 3381 740736404 740734659 0.000000e+00 2929
2 TraesCS3B01G085700 chr3B 96.655 1734 53 4 1647 3378 26678921 26680651 0.000000e+00 2876
3 TraesCS3B01G085700 chr3B 92.422 1953 97 13 3678 5606 53952067 53950142 0.000000e+00 2739
4 TraesCS3B01G085700 chr3B 100.000 1419 0 0 1 1419 54308600 54307182 0.000000e+00 2621
5 TraesCS3B01G085700 chr3B 79.300 1628 249 53 3788 5390 54500446 54502010 0.000000e+00 1059
6 TraesCS3B01G085700 chr3B 95.911 587 22 2 5020 5606 54068965 54069549 0.000000e+00 950
7 TraesCS3B01G085700 chr3B 95.400 587 24 3 5020 5606 54145160 54145743 0.000000e+00 931
8 TraesCS3B01G085700 chr3B 95.150 433 9 4 219 642 53953085 53952656 0.000000e+00 673
9 TraesCS3B01G085700 chr3B 89.544 373 25 7 3374 3737 53952408 53952041 1.420000e-125 460
10 TraesCS3B01G085700 chr3B 96.443 253 8 1 864 1115 53952653 53952401 3.120000e-112 416
11 TraesCS3B01G085700 chr3B 95.000 220 10 1 1 220 53958107 53957889 1.500000e-90 344
12 TraesCS3B01G085700 chr3B 93.897 213 13 0 5020 5232 53996091 53996303 7.010000e-84 322
13 TraesCS3B01G085700 chr2B 96.793 1746 51 5 1635 3378 728333562 728335304 0.000000e+00 2909
14 TraesCS3B01G085700 chr2B 96.808 1723 49 5 1657 3378 296455988 296457705 0.000000e+00 2872
15 TraesCS3B01G085700 chr2B 96.158 1744 55 5 1647 3381 594269409 594267669 0.000000e+00 2839
16 TraesCS3B01G085700 chr2B 97.386 306 5 3 1117 1419 537137863 537137558 8.330000e-143 518
17 TraesCS3B01G085700 chr2B 96.154 312 10 2 1109 1419 749056012 749056322 5.010000e-140 508
18 TraesCS3B01G085700 chr6B 96.583 1756 56 4 1627 3378 26519562 26521317 0.000000e+00 2907
19 TraesCS3B01G085700 chr6B 97.049 305 8 1 1116 1419 695761043 695761347 3.870000e-141 512
20 TraesCS3B01G085700 chr5B 96.776 1737 50 3 1643 3378 424455630 424457361 0.000000e+00 2892
21 TraesCS3B01G085700 chr5B 97.368 304 7 1 1117 1419 528605080 528604777 2.990000e-142 516
22 TraesCS3B01G085700 chr1B 96.699 1727 55 2 1657 3381 124194613 124192887 0.000000e+00 2872
23 TraesCS3B01G085700 chr1B 97.377 305 6 2 1117 1419 47212489 47212185 8.330000e-143 518
24 TraesCS3B01G085700 chr1B 97.049 305 7 2 1117 1419 22463881 22464185 3.870000e-141 512
25 TraesCS3B01G085700 chr1B 97.059 306 6 2 1117 1419 631793953 631794258 3.870000e-141 512
26 TraesCS3B01G085700 chr3D 92.810 1961 102 14 3678 5606 31776896 31774943 0.000000e+00 2804
27 TraesCS3B01G085700 chr3D 88.828 913 42 20 219 1115 31778131 31777263 0.000000e+00 1066
28 TraesCS3B01G085700 chr3D 78.905 1626 254 52 3788 5390 31846727 31848286 0.000000e+00 1020
29 TraesCS3B01G085700 chr3D 88.830 376 25 7 3374 3737 31777270 31776900 3.980000e-121 446
30 TraesCS3B01G085700 chr3D 88.182 220 17 5 1 220 532111827 532112037 2.590000e-63 254
31 TraesCS3B01G085700 chr3D 86.344 227 22 5 1 227 406160491 406160274 7.260000e-59 239
32 TraesCS3B01G085700 chr4A 95.853 1712 58 6 1676 3378 659721640 659719933 0.000000e+00 2756
33 TraesCS3B01G085700 chr4A 97.360 303 7 1 1118 1419 713622128 713621826 1.080000e-141 514
34 TraesCS3B01G085700 chr4B 97.059 306 7 2 1116 1419 23312812 23312507 1.080000e-141 514
35 TraesCS3B01G085700 chr5A 88.128 219 17 5 1 219 51552447 51552656 9.320000e-63 252
36 TraesCS3B01G085700 chr2D 87.727 220 18 2 1 220 398649226 398649436 1.210000e-61 248
37 TraesCS3B01G085700 chr2D 86.784 227 19 7 1 227 156554446 156554231 5.610000e-60 243
38 TraesCS3B01G085700 chr5D 86.937 222 16 7 1 220 255950279 255950489 2.610000e-58 237
39 TraesCS3B01G085700 chr7B 86.364 220 21 5 1 220 712868418 712868208 1.210000e-56 231
40 TraesCS3B01G085700 chr6D 86.425 221 19 7 1 220 200483762 200483972 1.210000e-56 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G085700 chr3B 54302995 54308600 5605 True 4985.500000 7350 100.00000 1 5606 2 chr3B.!!$R4 5605
1 TraesCS3B01G085700 chr3B 740734659 740736404 1745 True 2929.000000 2929 96.96400 1637 3381 1 chr3B.!!$R2 1744
2 TraesCS3B01G085700 chr3B 26678921 26680651 1730 False 2876.000000 2876 96.65500 1647 3378 1 chr3B.!!$F1 1731
3 TraesCS3B01G085700 chr3B 53950142 53953085 2943 True 1072.000000 2739 93.38975 219 5606 4 chr3B.!!$R3 5387
4 TraesCS3B01G085700 chr3B 54500446 54502010 1564 False 1059.000000 1059 79.30000 3788 5390 1 chr3B.!!$F5 1602
5 TraesCS3B01G085700 chr3B 54068965 54069549 584 False 950.000000 950 95.91100 5020 5606 1 chr3B.!!$F3 586
6 TraesCS3B01G085700 chr3B 54145160 54145743 583 False 931.000000 931 95.40000 5020 5606 1 chr3B.!!$F4 586
7 TraesCS3B01G085700 chr2B 728333562 728335304 1742 False 2909.000000 2909 96.79300 1635 3378 1 chr2B.!!$F2 1743
8 TraesCS3B01G085700 chr2B 296455988 296457705 1717 False 2872.000000 2872 96.80800 1657 3378 1 chr2B.!!$F1 1721
9 TraesCS3B01G085700 chr2B 594267669 594269409 1740 True 2839.000000 2839 96.15800 1647 3381 1 chr2B.!!$R2 1734
10 TraesCS3B01G085700 chr6B 26519562 26521317 1755 False 2907.000000 2907 96.58300 1627 3378 1 chr6B.!!$F1 1751
11 TraesCS3B01G085700 chr5B 424455630 424457361 1731 False 2892.000000 2892 96.77600 1643 3378 1 chr5B.!!$F1 1735
12 TraesCS3B01G085700 chr1B 124192887 124194613 1726 True 2872.000000 2872 96.69900 1657 3381 1 chr1B.!!$R2 1724
13 TraesCS3B01G085700 chr3D 31774943 31778131 3188 True 1438.666667 2804 90.15600 219 5606 3 chr3D.!!$R2 5387
14 TraesCS3B01G085700 chr3D 31846727 31848286 1559 False 1020.000000 1020 78.90500 3788 5390 1 chr3D.!!$F1 1602
15 TraesCS3B01G085700 chr4A 659719933 659721640 1707 True 2756.000000 2756 95.85300 1676 3378 1 chr4A.!!$R1 1702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.029567 CCGACGCTATTCTCTTCGCT 59.970 55.0 0.00 0.00 0.00 4.93 F
1132 1162 0.103208 GGTCACTAGTGCAGGATCGG 59.897 60.0 18.45 0.00 0.00 4.18 F
1174 1204 0.034477 CCCTTTAGTGCCGGTTCCAT 60.034 55.0 1.90 0.00 0.00 3.41 F
1229 1259 0.177373 CCCCTTAGTACCGGTTCAGC 59.823 60.0 15.04 0.59 0.00 4.26 F
2410 2444 0.323629 CAGTTTAGTTCAGCCCCGGA 59.676 55.0 0.73 0.00 0.00 5.14 F
3737 3798 0.178973 TGTGAGGAAGACACGGAGGA 60.179 55.0 0.00 0.00 40.61 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1155 1185 0.034477 ATGGAACCGGCACTAAAGGG 60.034 55.000 0.0 0.0 0.0 3.95 R
2405 2439 0.535797 GGACCTTCTACTGTTCCGGG 59.464 60.000 0.0 0.0 0.0 5.73 R
2689 2724 2.224549 GCACACACGCACACCTATTTTA 59.775 45.455 0.0 0.0 0.0 1.52 R
2701 2736 3.740044 AAGTATACAATGCACACACGC 57.260 42.857 5.5 0.0 0.0 5.34 R
3847 3980 0.036010 ACTTCAGCTTCCATCCGGTG 60.036 55.000 0.0 0.0 0.0 4.94 R
4621 4770 2.175621 CCAGCGCGCAGATCAATCA 61.176 57.895 35.1 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.807538 GTCACCGCCGCGAGTCTA 61.808 66.667 15.93 0.00 0.00 2.59
19 20 3.807538 TCACCGCCGCGAGTCTAC 61.808 66.667 15.93 0.00 0.00 2.59
20 21 4.111016 CACCGCCGCGAGTCTACA 62.111 66.667 15.93 0.00 0.00 2.74
21 22 4.112341 ACCGCCGCGAGTCTACAC 62.112 66.667 15.93 0.00 0.00 2.90
22 23 4.849329 CCGCCGCGAGTCTACACC 62.849 72.222 15.93 0.00 0.00 4.16
23 24 4.111016 CGCCGCGAGTCTACACCA 62.111 66.667 8.23 0.00 0.00 4.17
24 25 2.494918 GCCGCGAGTCTACACCAT 59.505 61.111 8.23 0.00 0.00 3.55
25 26 1.878522 GCCGCGAGTCTACACCATG 60.879 63.158 8.23 0.00 0.00 3.66
26 27 1.226974 CCGCGAGTCTACACCATGG 60.227 63.158 11.19 11.19 0.00 3.66
27 28 1.878522 CGCGAGTCTACACCATGGC 60.879 63.158 13.04 0.00 0.00 4.40
28 29 1.521681 GCGAGTCTACACCATGGCC 60.522 63.158 13.04 0.00 0.00 5.36
29 30 1.226974 CGAGTCTACACCATGGCCG 60.227 63.158 13.04 5.85 0.00 6.13
30 31 1.898154 GAGTCTACACCATGGCCGT 59.102 57.895 13.04 12.32 0.00 5.68
31 32 0.460284 GAGTCTACACCATGGCCGTG 60.460 60.000 18.73 18.73 37.26 4.94
32 33 1.449601 GTCTACACCATGGCCGTGG 60.450 63.158 37.77 37.77 45.04 4.94
33 34 1.610967 TCTACACCATGGCCGTGGA 60.611 57.895 44.12 24.86 42.02 4.02
34 35 1.449601 CTACACCATGGCCGTGGAC 60.450 63.158 44.12 0.00 42.02 4.02
35 36 2.869503 CTACACCATGGCCGTGGACC 62.870 65.000 44.12 0.00 42.02 4.46
36 37 4.343323 CACCATGGCCGTGGACCA 62.343 66.667 44.12 4.79 42.02 4.02
37 38 3.575247 ACCATGGCCGTGGACCAA 61.575 61.111 44.12 3.89 42.02 3.67
38 39 3.061848 CCATGGCCGTGGACCAAC 61.062 66.667 36.99 0.00 42.02 3.77
39 40 3.061848 CATGGCCGTGGACCAACC 61.062 66.667 17.90 0.00 41.49 3.77
40 41 4.715523 ATGGCCGTGGACCAACCG 62.716 66.667 0.00 0.00 41.49 4.44
49 50 4.699522 GACCAACCGGCGCCTTCT 62.700 66.667 26.68 4.84 34.57 2.85
50 51 4.699522 ACCAACCGGCGCCTTCTC 62.700 66.667 26.68 0.00 34.57 2.87
61 62 3.415087 CCTTCTCCCTGGCCCCTG 61.415 72.222 0.00 0.00 0.00 4.45
62 63 4.120755 CTTCTCCCTGGCCCCTGC 62.121 72.222 0.00 0.00 0.00 4.85
63 64 4.682714 TTCTCCCTGGCCCCTGCT 62.683 66.667 0.00 0.00 37.74 4.24
66 67 4.346889 TCCCTGGCCCCTGCTGTA 62.347 66.667 0.00 0.00 37.74 2.74
67 68 4.115199 CCCTGGCCCCTGCTGTAC 62.115 72.222 0.00 0.00 37.74 2.90
68 69 4.473520 CCTGGCCCCTGCTGTACG 62.474 72.222 0.00 0.00 37.74 3.67
69 70 3.390521 CTGGCCCCTGCTGTACGA 61.391 66.667 0.00 0.00 37.74 3.43
70 71 3.665675 CTGGCCCCTGCTGTACGAC 62.666 68.421 0.00 0.00 37.74 4.34
71 72 4.814294 GGCCCCTGCTGTACGACG 62.814 72.222 0.00 0.00 37.74 5.12
72 73 4.814294 GCCCCTGCTGTACGACGG 62.814 72.222 0.00 0.00 33.53 4.79
73 74 4.143333 CCCCTGCTGTACGACGGG 62.143 72.222 0.00 5.93 34.62 5.28
74 75 4.814294 CCCTGCTGTACGACGGGC 62.814 72.222 0.00 0.00 0.00 6.13
75 76 4.814294 CCTGCTGTACGACGGGCC 62.814 72.222 0.00 0.00 0.00 5.80
76 77 4.814294 CTGCTGTACGACGGGCCC 62.814 72.222 13.57 13.57 0.00 5.80
78 79 4.509737 GCTGTACGACGGGCCCTC 62.510 72.222 22.43 15.34 0.00 4.30
79 80 3.834799 CTGTACGACGGGCCCTCC 61.835 72.222 22.43 10.39 0.00 4.30
93 94 4.394712 CTCCGGCTCTGCGGGTTT 62.395 66.667 14.22 0.00 46.84 3.27
94 95 4.388499 TCCGGCTCTGCGGGTTTC 62.388 66.667 14.22 0.00 46.84 2.78
96 97 4.697756 CGGCTCTGCGGGTTTCCA 62.698 66.667 0.00 0.00 0.00 3.53
97 98 3.056328 GGCTCTGCGGGTTTCCAC 61.056 66.667 0.00 0.00 0.00 4.02
98 99 3.423154 GCTCTGCGGGTTTCCACG 61.423 66.667 0.00 0.00 0.00 4.94
105 106 3.365265 GGGTTTCCACGCTGGCTG 61.365 66.667 0.00 0.00 37.47 4.85
106 107 2.594592 GGTTTCCACGCTGGCTGT 60.595 61.111 0.00 0.00 37.47 4.40
107 108 2.639286 GTTTCCACGCTGGCTGTG 59.361 61.111 3.19 3.19 37.47 3.66
108 109 3.286751 TTTCCACGCTGGCTGTGC 61.287 61.111 4.74 0.00 37.47 4.57
126 127 4.659172 CAGGCCACCGCTTCCCAA 62.659 66.667 5.01 0.00 34.44 4.12
127 128 4.660938 AGGCCACCGCTTCCCAAC 62.661 66.667 5.01 0.00 34.44 3.77
128 129 4.966787 GGCCACCGCTTCCCAACA 62.967 66.667 0.00 0.00 34.44 3.33
129 130 3.365265 GCCACCGCTTCCCAACAG 61.365 66.667 0.00 0.00 0.00 3.16
130 131 2.429930 CCACCGCTTCCCAACAGA 59.570 61.111 0.00 0.00 0.00 3.41
131 132 1.966451 CCACCGCTTCCCAACAGAC 60.966 63.158 0.00 0.00 0.00 3.51
132 133 1.966451 CACCGCTTCCCAACAGACC 60.966 63.158 0.00 0.00 0.00 3.85
133 134 2.429930 CCGCTTCCCAACAGACCA 59.570 61.111 0.00 0.00 0.00 4.02
134 135 1.966451 CCGCTTCCCAACAGACCAC 60.966 63.158 0.00 0.00 0.00 4.16
135 136 1.966451 CGCTTCCCAACAGACCACC 60.966 63.158 0.00 0.00 0.00 4.61
136 137 1.456287 GCTTCCCAACAGACCACCT 59.544 57.895 0.00 0.00 0.00 4.00
144 145 3.736483 CAGACCACCTGTGCACAC 58.264 61.111 17.42 4.95 38.10 3.82
145 146 1.893808 CAGACCACCTGTGCACACC 60.894 63.158 17.42 1.15 38.10 4.16
146 147 2.972505 GACCACCTGTGCACACCG 60.973 66.667 17.42 11.57 0.00 4.94
147 148 4.562425 ACCACCTGTGCACACCGG 62.562 66.667 17.42 19.28 40.90 5.28
148 149 4.248842 CCACCTGTGCACACCGGA 62.249 66.667 26.97 2.92 37.84 5.14
149 150 2.972505 CACCTGTGCACACCGGAC 60.973 66.667 26.97 0.00 37.84 4.79
150 151 4.250305 ACCTGTGCACACCGGACC 62.250 66.667 26.97 0.00 37.84 4.46
152 153 4.293648 CTGTGCACACCGGACCGA 62.294 66.667 17.42 0.00 34.43 4.69
153 154 4.595538 TGTGCACACCGGACCGAC 62.596 66.667 17.42 4.68 34.43 4.79
157 158 3.740397 CACACCGGACCGACGCTA 61.740 66.667 17.49 0.00 0.00 4.26
158 159 2.753043 ACACCGGACCGACGCTAT 60.753 61.111 17.49 0.00 0.00 2.97
159 160 2.345760 ACACCGGACCGACGCTATT 61.346 57.895 17.49 0.00 0.00 1.73
160 161 1.588139 CACCGGACCGACGCTATTC 60.588 63.158 17.49 0.00 0.00 1.75
161 162 1.751927 ACCGGACCGACGCTATTCT 60.752 57.895 17.49 0.00 0.00 2.40
162 163 1.008767 CCGGACCGACGCTATTCTC 60.009 63.158 17.49 0.00 0.00 2.87
163 164 1.445716 CCGGACCGACGCTATTCTCT 61.446 60.000 17.49 0.00 0.00 3.10
164 165 0.381089 CGGACCGACGCTATTCTCTT 59.619 55.000 8.64 0.00 0.00 2.85
165 166 1.597445 CGGACCGACGCTATTCTCTTC 60.597 57.143 8.64 0.00 0.00 2.87
166 167 1.597445 GGACCGACGCTATTCTCTTCG 60.597 57.143 0.00 0.00 0.00 3.79
167 168 0.248539 ACCGACGCTATTCTCTTCGC 60.249 55.000 0.00 0.00 0.00 4.70
168 169 0.029567 CCGACGCTATTCTCTTCGCT 59.970 55.000 0.00 0.00 0.00 4.93
169 170 1.116436 CGACGCTATTCTCTTCGCTG 58.884 55.000 0.00 0.00 0.00 5.18
170 171 0.849579 GACGCTATTCTCTTCGCTGC 59.150 55.000 0.00 0.00 0.00 5.25
171 172 0.457851 ACGCTATTCTCTTCGCTGCT 59.542 50.000 0.00 0.00 0.00 4.24
172 173 1.127701 CGCTATTCTCTTCGCTGCTC 58.872 55.000 0.00 0.00 0.00 4.26
173 174 1.496934 GCTATTCTCTTCGCTGCTCC 58.503 55.000 0.00 0.00 0.00 4.70
174 175 1.764851 CTATTCTCTTCGCTGCTCCG 58.235 55.000 0.00 0.00 0.00 4.63
175 176 1.066303 CTATTCTCTTCGCTGCTCCGT 59.934 52.381 0.00 0.00 0.00 4.69
176 177 1.103803 ATTCTCTTCGCTGCTCCGTA 58.896 50.000 0.00 0.00 0.00 4.02
177 178 0.170561 TTCTCTTCGCTGCTCCGTAC 59.829 55.000 0.00 0.00 0.00 3.67
178 179 1.226717 CTCTTCGCTGCTCCGTACC 60.227 63.158 0.00 0.00 0.00 3.34
179 180 2.579787 CTTCGCTGCTCCGTACCG 60.580 66.667 0.00 0.00 0.00 4.02
180 181 4.789075 TTCGCTGCTCCGTACCGC 62.789 66.667 0.00 0.00 0.00 5.68
184 185 4.554363 CTGCTCCGTACCGCCGAG 62.554 72.222 0.00 0.00 0.00 4.63
190 191 4.894203 CGTACCGCCGAGCCGTAC 62.894 72.222 13.40 13.40 38.91 3.67
191 192 4.894203 GTACCGCCGAGCCGTACG 62.894 72.222 8.69 8.69 34.78 3.67
209 210 2.887568 CTCACGGCGGTCATGCTC 60.888 66.667 13.24 0.00 34.52 4.26
210 211 3.647649 CTCACGGCGGTCATGCTCA 62.648 63.158 13.24 0.00 34.52 4.26
211 212 3.190849 CACGGCGGTCATGCTCAG 61.191 66.667 13.24 0.00 34.52 3.35
212 213 3.381983 ACGGCGGTCATGCTCAGA 61.382 61.111 13.24 0.00 34.52 3.27
213 214 2.887568 CGGCGGTCATGCTCAGAC 60.888 66.667 0.00 0.00 35.29 3.51
214 215 2.265739 GGCGGTCATGCTCAGACA 59.734 61.111 6.20 0.00 37.74 3.41
215 216 2.103042 GGCGGTCATGCTCAGACAC 61.103 63.158 6.20 0.00 37.74 3.67
216 217 2.103042 GCGGTCATGCTCAGACACC 61.103 63.158 6.20 0.00 37.74 4.16
217 218 1.807165 CGGTCATGCTCAGACACCG 60.807 63.158 5.61 5.61 43.71 4.94
352 353 4.499183 ACTTCGGATGACTCTTTCATGTC 58.501 43.478 0.00 0.00 45.67 3.06
353 354 3.150848 TCGGATGACTCTTTCATGTCG 57.849 47.619 0.00 0.00 45.67 4.35
377 378 0.532640 TTCATCTGCGCGCATACCAT 60.533 50.000 36.48 20.46 0.00 3.55
399 400 1.526917 GCCCATGAAGTAGCGCCAT 60.527 57.895 2.29 0.00 0.00 4.40
435 442 0.317160 ACGTGCGAGAACTTCCATCA 59.683 50.000 0.00 0.00 0.00 3.07
449 456 7.395489 AGAACTTCCATCATAGAAAACAGCAAT 59.605 33.333 0.00 0.00 0.00 3.56
738 748 5.772825 AGAGCAAACTAAGCAATCAACAA 57.227 34.783 0.00 0.00 0.00 2.83
854 883 1.719709 GATCGCCCCGTTTTACTGC 59.280 57.895 0.00 0.00 0.00 4.40
875 904 7.061054 ACTGCTAATACCGCCTCTATATCATA 58.939 38.462 0.00 0.00 0.00 2.15
876 905 7.726291 ACTGCTAATACCGCCTCTATATCATAT 59.274 37.037 0.00 0.00 0.00 1.78
877 906 8.112016 TGCTAATACCGCCTCTATATCATATC 57.888 38.462 0.00 0.00 0.00 1.63
998 1028 2.514592 CTGCGCCGACCCATCATT 60.515 61.111 4.18 0.00 0.00 2.57
1064 1094 0.664166 GACCGTTTCGTCTACCGCAA 60.664 55.000 0.00 0.00 36.19 4.85
1115 1145 0.680921 TTCCCGGACGAATCTACGGT 60.681 55.000 0.73 0.00 44.57 4.83
1116 1146 1.097547 TCCCGGACGAATCTACGGTC 61.098 60.000 0.73 0.00 44.57 4.79
1117 1147 1.378882 CCCGGACGAATCTACGGTCA 61.379 60.000 0.73 0.00 44.57 4.02
1118 1148 0.248377 CCGGACGAATCTACGGTCAC 60.248 60.000 0.00 0.00 41.34 3.67
1119 1149 0.731417 CGGACGAATCTACGGTCACT 59.269 55.000 0.00 0.00 37.61 3.41
1120 1150 1.935873 CGGACGAATCTACGGTCACTA 59.064 52.381 0.00 0.00 37.61 2.74
1121 1151 2.033065 CGGACGAATCTACGGTCACTAG 60.033 54.545 0.00 0.00 37.61 2.57
1122 1152 2.941720 GGACGAATCTACGGTCACTAGT 59.058 50.000 0.00 0.00 37.61 2.57
1123 1153 3.242673 GGACGAATCTACGGTCACTAGTG 60.243 52.174 17.17 17.17 37.61 2.74
1124 1154 2.097142 ACGAATCTACGGTCACTAGTGC 59.903 50.000 18.45 12.70 37.61 4.40
1125 1155 2.096980 CGAATCTACGGTCACTAGTGCA 59.903 50.000 18.45 4.52 0.00 4.57
1126 1156 3.696898 GAATCTACGGTCACTAGTGCAG 58.303 50.000 18.45 15.18 0.00 4.41
1127 1157 1.460504 TCTACGGTCACTAGTGCAGG 58.539 55.000 18.45 11.06 0.00 4.85
1128 1158 1.003928 TCTACGGTCACTAGTGCAGGA 59.996 52.381 18.45 9.65 0.00 3.86
1129 1159 2.025155 CTACGGTCACTAGTGCAGGAT 58.975 52.381 18.45 5.03 0.00 3.24
1130 1160 0.818296 ACGGTCACTAGTGCAGGATC 59.182 55.000 18.45 0.02 0.00 3.36
1131 1161 0.248661 CGGTCACTAGTGCAGGATCG 60.249 60.000 18.45 9.19 0.00 3.69
1132 1162 0.103208 GGTCACTAGTGCAGGATCGG 59.897 60.000 18.45 0.00 0.00 4.18
1133 1163 0.103208 GTCACTAGTGCAGGATCGGG 59.897 60.000 18.45 0.00 0.00 5.14
1134 1164 1.227380 CACTAGTGCAGGATCGGGC 60.227 63.158 10.54 0.61 0.00 6.13
1135 1165 1.685765 ACTAGTGCAGGATCGGGCA 60.686 57.895 5.88 5.88 37.77 5.36
1136 1166 1.264749 ACTAGTGCAGGATCGGGCAA 61.265 55.000 10.99 0.00 42.45 4.52
1137 1167 0.107456 CTAGTGCAGGATCGGGCAAT 59.893 55.000 13.42 13.42 42.45 3.56
1138 1168 1.344438 CTAGTGCAGGATCGGGCAATA 59.656 52.381 10.99 12.72 42.45 1.90
1139 1169 0.107456 AGTGCAGGATCGGGCAATAG 59.893 55.000 10.99 0.00 42.45 1.73
1140 1170 1.227943 TGCAGGATCGGGCAATAGC 60.228 57.895 7.38 0.00 37.03 2.97
1141 1171 1.227943 GCAGGATCGGGCAATAGCA 60.228 57.895 2.66 0.00 44.61 3.49
1142 1172 1.510480 GCAGGATCGGGCAATAGCAC 61.510 60.000 2.66 0.00 44.61 4.40
1143 1173 0.886490 CAGGATCGGGCAATAGCACC 60.886 60.000 0.00 0.00 42.77 5.01
1146 1176 2.660258 GATCGGGCAATAGCACCGGT 62.660 60.000 0.00 0.00 46.11 5.28
1147 1177 2.437716 CGGGCAATAGCACCGGTT 60.438 61.111 2.97 0.00 45.12 4.44
1148 1178 2.469516 CGGGCAATAGCACCGGTTC 61.470 63.158 2.97 0.00 45.12 3.62
1149 1179 2.469516 GGGCAATAGCACCGGTTCG 61.470 63.158 2.97 0.00 44.61 3.95
1150 1180 1.743995 GGCAATAGCACCGGTTCGT 60.744 57.895 2.97 0.00 44.61 3.85
1151 1181 0.460635 GGCAATAGCACCGGTTCGTA 60.461 55.000 2.97 0.00 44.61 3.43
1152 1182 1.361793 GCAATAGCACCGGTTCGTAA 58.638 50.000 2.97 0.00 41.58 3.18
1153 1183 1.326548 GCAATAGCACCGGTTCGTAAG 59.673 52.381 2.97 0.00 41.58 2.34
1154 1184 1.931172 CAATAGCACCGGTTCGTAAGG 59.069 52.381 2.97 0.00 38.47 2.69
1155 1185 0.179092 ATAGCACCGGTTCGTAAGGC 60.179 55.000 2.97 2.83 38.47 4.35
1156 1186 2.229690 TAGCACCGGTTCGTAAGGCC 62.230 60.000 2.97 0.00 38.47 5.19
1157 1187 2.435410 CACCGGTTCGTAAGGCCC 60.435 66.667 2.97 0.00 38.47 5.80
1158 1188 2.605601 ACCGGTTCGTAAGGCCCT 60.606 61.111 0.00 0.00 38.47 5.19
1159 1189 2.219164 ACCGGTTCGTAAGGCCCTT 61.219 57.895 0.00 0.00 38.47 3.95
1160 1190 1.002990 CCGGTTCGTAAGGCCCTTT 60.003 57.895 0.00 0.00 38.47 3.11
1161 1191 0.249955 CCGGTTCGTAAGGCCCTTTA 59.750 55.000 0.00 0.00 38.47 1.85
1162 1192 1.648504 CGGTTCGTAAGGCCCTTTAG 58.351 55.000 0.00 0.00 38.47 1.85
1163 1193 1.066645 CGGTTCGTAAGGCCCTTTAGT 60.067 52.381 0.00 0.00 38.47 2.24
1164 1194 2.353323 GGTTCGTAAGGCCCTTTAGTG 58.647 52.381 0.00 0.00 38.47 2.74
1165 1195 1.736126 GTTCGTAAGGCCCTTTAGTGC 59.264 52.381 0.00 0.00 38.47 4.40
1170 1200 2.035155 GGCCCTTTAGTGCCGGTT 59.965 61.111 1.90 0.00 38.00 4.44
1171 1201 2.044555 GGCCCTTTAGTGCCGGTTC 61.045 63.158 1.90 0.00 38.00 3.62
1172 1202 2.044555 GCCCTTTAGTGCCGGTTCC 61.045 63.158 1.90 0.00 0.00 3.62
1173 1203 1.377229 CCCTTTAGTGCCGGTTCCA 59.623 57.895 1.90 0.00 0.00 3.53
1174 1204 0.034477 CCCTTTAGTGCCGGTTCCAT 60.034 55.000 1.90 0.00 0.00 3.41
1175 1205 1.210967 CCCTTTAGTGCCGGTTCCATA 59.789 52.381 1.90 0.00 0.00 2.74
1176 1206 2.356330 CCCTTTAGTGCCGGTTCCATAA 60.356 50.000 1.90 0.00 0.00 1.90
1177 1207 2.681344 CCTTTAGTGCCGGTTCCATAAC 59.319 50.000 1.90 0.00 34.66 1.89
1186 1216 2.406596 GGTTCCATAACCGGCACTAA 57.593 50.000 0.00 0.00 45.61 2.24
1187 1217 2.713877 GGTTCCATAACCGGCACTAAA 58.286 47.619 0.00 0.00 45.61 1.85
1188 1218 2.681344 GGTTCCATAACCGGCACTAAAG 59.319 50.000 0.00 0.00 45.61 1.85
1189 1219 3.340928 GTTCCATAACCGGCACTAAAGT 58.659 45.455 0.00 0.00 0.00 2.66
1190 1220 5.922080 GGTTCCATAACCGGCACTAAAGTG 61.922 50.000 0.00 5.73 45.61 3.16
1195 1225 0.250166 ACCGGCACTAAAGTGTGGTC 60.250 55.000 17.89 1.49 46.40 4.02
1196 1226 2.920049 ACCGGCACTAAAGTGTGGTCA 61.920 52.381 17.89 0.00 46.40 4.02
1206 1236 2.942641 GTGTGGTCACTAAAGCCCC 58.057 57.895 2.66 0.00 40.98 5.80
1207 1237 0.608308 GTGTGGTCACTAAAGCCCCC 60.608 60.000 2.66 0.00 40.98 5.40
1227 1257 2.995480 CCCCCTTAGTACCGGTTCA 58.005 57.895 15.04 0.00 0.00 3.18
1228 1258 0.828677 CCCCCTTAGTACCGGTTCAG 59.171 60.000 15.04 1.37 0.00 3.02
1229 1259 0.177373 CCCCTTAGTACCGGTTCAGC 59.823 60.000 15.04 0.59 0.00 4.26
1230 1260 0.899720 CCCTTAGTACCGGTTCAGCA 59.100 55.000 15.04 0.00 0.00 4.41
1231 1261 1.405121 CCCTTAGTACCGGTTCAGCAC 60.405 57.143 15.04 3.84 0.00 4.40
1232 1262 1.625616 CTTAGTACCGGTTCAGCACG 58.374 55.000 15.04 0.00 0.00 5.34
1233 1263 1.200716 CTTAGTACCGGTTCAGCACGA 59.799 52.381 15.04 0.00 0.00 4.35
1234 1264 1.246649 TAGTACCGGTTCAGCACGAA 58.753 50.000 15.04 0.00 0.00 3.85
1247 1277 2.159181 CACGAACCGGTGCTAAAGG 58.841 57.895 8.52 0.00 0.00 3.11
1248 1278 1.004200 ACGAACCGGTGCTAAAGGG 60.004 57.895 8.52 0.00 0.00 3.95
1249 1279 2.396157 CGAACCGGTGCTAAAGGGC 61.396 63.158 8.52 0.00 0.00 5.19
1250 1280 1.302993 GAACCGGTGCTAAAGGGCA 60.303 57.895 8.52 0.00 40.15 5.36
1251 1281 0.891904 GAACCGGTGCTAAAGGGCAA 60.892 55.000 8.52 0.00 44.18 4.52
1252 1282 1.176619 AACCGGTGCTAAAGGGCAAC 61.177 55.000 8.52 0.00 45.46 4.17
1265 1295 4.012895 GCAACCACGTGGCACGAG 62.013 66.667 42.65 34.61 46.05 4.18
1266 1296 4.012895 CAACCACGTGGCACGAGC 62.013 66.667 42.65 4.67 46.05 5.03
1284 1314 3.333219 CAGCTCTGGGGGCCTGAA 61.333 66.667 0.84 0.00 31.33 3.02
1285 1315 3.013932 AGCTCTGGGGGCCTGAAG 61.014 66.667 0.84 0.00 31.33 3.02
1286 1316 4.811364 GCTCTGGGGGCCTGAAGC 62.811 72.222 0.84 4.18 42.60 3.86
1297 1327 2.039818 GCCTGAAGCCCTTTAGTACC 57.960 55.000 0.00 0.00 34.35 3.34
1298 1328 1.742750 GCCTGAAGCCCTTTAGTACCG 60.743 57.143 0.00 0.00 34.35 4.02
1299 1329 1.134491 CCTGAAGCCCTTTAGTACCGG 60.134 57.143 0.00 0.00 0.00 5.28
1300 1330 1.553704 CTGAAGCCCTTTAGTACCGGT 59.446 52.381 13.98 13.98 0.00 5.28
1301 1331 1.980036 TGAAGCCCTTTAGTACCGGTT 59.020 47.619 15.04 0.00 0.00 4.44
1302 1332 2.289819 TGAAGCCCTTTAGTACCGGTTG 60.290 50.000 15.04 0.00 0.00 3.77
1303 1333 0.616891 AGCCCTTTAGTACCGGTTGG 59.383 55.000 15.04 5.94 42.84 3.77
1330 1360 4.835678 ACCAACCGGTACTATAAGGTTTG 58.164 43.478 8.00 0.00 46.71 2.93
1331 1361 4.193865 CCAACCGGTACTATAAGGTTTGG 58.806 47.826 8.00 2.77 43.72 3.28
1332 1362 4.193865 CAACCGGTACTATAAGGTTTGGG 58.806 47.826 8.00 0.00 43.72 4.12
1333 1363 2.773661 ACCGGTACTATAAGGTTTGGGG 59.226 50.000 4.49 0.00 32.17 4.96
1334 1364 2.773661 CCGGTACTATAAGGTTTGGGGT 59.226 50.000 0.00 0.00 0.00 4.95
1335 1365 3.200605 CCGGTACTATAAGGTTTGGGGTT 59.799 47.826 0.00 0.00 0.00 4.11
1336 1366 4.324486 CCGGTACTATAAGGTTTGGGGTTT 60.324 45.833 0.00 0.00 0.00 3.27
1337 1367 5.255687 CGGTACTATAAGGTTTGGGGTTTT 58.744 41.667 0.00 0.00 0.00 2.43
1338 1368 5.355071 CGGTACTATAAGGTTTGGGGTTTTC 59.645 44.000 0.00 0.00 0.00 2.29
1339 1369 6.247676 GGTACTATAAGGTTTGGGGTTTTCA 58.752 40.000 0.00 0.00 0.00 2.69
1340 1370 6.376299 GGTACTATAAGGTTTGGGGTTTTCAG 59.624 42.308 0.00 0.00 0.00 3.02
1341 1371 5.960704 ACTATAAGGTTTGGGGTTTTCAGT 58.039 37.500 0.00 0.00 0.00 3.41
1342 1372 6.378745 ACTATAAGGTTTGGGGTTTTCAGTT 58.621 36.000 0.00 0.00 0.00 3.16
1343 1373 6.842280 ACTATAAGGTTTGGGGTTTTCAGTTT 59.158 34.615 0.00 0.00 0.00 2.66
1344 1374 4.919774 AAGGTTTGGGGTTTTCAGTTTT 57.080 36.364 0.00 0.00 0.00 2.43
1345 1375 7.678207 ATAAGGTTTGGGGTTTTCAGTTTTA 57.322 32.000 0.00 0.00 0.00 1.52
1346 1376 6.569127 AAGGTTTGGGGTTTTCAGTTTTAT 57.431 33.333 0.00 0.00 0.00 1.40
1347 1377 5.924356 AGGTTTGGGGTTTTCAGTTTTATG 58.076 37.500 0.00 0.00 0.00 1.90
1348 1378 5.663556 AGGTTTGGGGTTTTCAGTTTTATGA 59.336 36.000 0.00 0.00 0.00 2.15
1349 1379 6.328934 AGGTTTGGGGTTTTCAGTTTTATGAT 59.671 34.615 0.00 0.00 0.00 2.45
1350 1380 6.995686 GGTTTGGGGTTTTCAGTTTTATGATT 59.004 34.615 0.00 0.00 0.00 2.57
1351 1381 7.500892 GGTTTGGGGTTTTCAGTTTTATGATTT 59.499 33.333 0.00 0.00 0.00 2.17
1352 1382 8.556194 GTTTGGGGTTTTCAGTTTTATGATTTC 58.444 33.333 0.00 0.00 0.00 2.17
1353 1383 7.610580 TGGGGTTTTCAGTTTTATGATTTCT 57.389 32.000 0.00 0.00 0.00 2.52
1354 1384 8.028652 TGGGGTTTTCAGTTTTATGATTTCTT 57.971 30.769 0.00 0.00 0.00 2.52
1355 1385 8.490311 TGGGGTTTTCAGTTTTATGATTTCTTT 58.510 29.630 0.00 0.00 0.00 2.52
1356 1386 9.337396 GGGGTTTTCAGTTTTATGATTTCTTTT 57.663 29.630 0.00 0.00 0.00 2.27
1394 1424 9.372369 TGTGTTTCCATTTTAATTCTTTTTCGT 57.628 25.926 0.00 0.00 0.00 3.85
1398 1428 9.709600 TTTCCATTTTAATTCTTTTTCGTTTGC 57.290 25.926 0.00 0.00 0.00 3.68
1399 1429 8.655651 TCCATTTTAATTCTTTTTCGTTTGCT 57.344 26.923 0.00 0.00 0.00 3.91
1400 1430 8.547069 TCCATTTTAATTCTTTTTCGTTTGCTG 58.453 29.630 0.00 0.00 0.00 4.41
1401 1431 7.798052 CCATTTTAATTCTTTTTCGTTTGCTGG 59.202 33.333 0.00 0.00 0.00 4.85
1402 1432 7.835634 TTTTAATTCTTTTTCGTTTGCTGGT 57.164 28.000 0.00 0.00 0.00 4.00
1403 1433 8.928270 TTTTAATTCTTTTTCGTTTGCTGGTA 57.072 26.923 0.00 0.00 0.00 3.25
1404 1434 9.535878 TTTTAATTCTTTTTCGTTTGCTGGTAT 57.464 25.926 0.00 0.00 0.00 2.73
1405 1435 9.535878 TTTAATTCTTTTTCGTTTGCTGGTATT 57.464 25.926 0.00 0.00 0.00 1.89
1406 1436 9.535878 TTAATTCTTTTTCGTTTGCTGGTATTT 57.464 25.926 0.00 0.00 0.00 1.40
1407 1437 8.432110 AATTCTTTTTCGTTTGCTGGTATTTT 57.568 26.923 0.00 0.00 0.00 1.82
1408 1438 9.535878 AATTCTTTTTCGTTTGCTGGTATTTTA 57.464 25.926 0.00 0.00 0.00 1.52
1409 1439 7.917720 TCTTTTTCGTTTGCTGGTATTTTAC 57.082 32.000 0.00 0.00 0.00 2.01
1410 1440 6.633634 TCTTTTTCGTTTGCTGGTATTTTACG 59.366 34.615 0.00 0.00 0.00 3.18
1411 1441 5.670149 TTTCGTTTGCTGGTATTTTACGA 57.330 34.783 0.00 0.00 35.11 3.43
1412 1442 5.866335 TTCGTTTGCTGGTATTTTACGAT 57.134 34.783 0.00 0.00 36.58 3.73
1413 1443 6.964741 TTCGTTTGCTGGTATTTTACGATA 57.035 33.333 0.00 0.00 36.58 2.92
1414 1444 6.335176 TCGTTTGCTGGTATTTTACGATAC 57.665 37.500 0.00 0.00 32.39 2.24
1415 1445 6.101332 TCGTTTGCTGGTATTTTACGATACT 58.899 36.000 0.00 0.00 33.86 2.12
1416 1446 7.257003 TCGTTTGCTGGTATTTTACGATACTA 58.743 34.615 0.00 0.00 33.86 1.82
1417 1447 7.220683 TCGTTTGCTGGTATTTTACGATACTAC 59.779 37.037 0.00 0.00 33.86 2.73
1418 1448 7.009448 CGTTTGCTGGTATTTTACGATACTACA 59.991 37.037 0.00 0.00 33.86 2.74
1900 1930 5.146298 AGCTCTCCTGATTGATCATACTGA 58.854 41.667 0.00 0.00 36.02 3.41
1959 1989 0.998928 TTCTCATTGCTGCCCCCTAA 59.001 50.000 0.00 0.00 0.00 2.69
1965 1995 3.052944 TCATTGCTGCCCCCTAATACTTT 60.053 43.478 0.00 0.00 0.00 2.66
2031 2062 4.083590 GCATTCATCGCTTCTAGAAATCCC 60.084 45.833 6.63 0.00 0.00 3.85
2035 2066 3.160777 TCGCTTCTAGAAATCCCGAAC 57.839 47.619 6.63 0.00 0.00 3.95
2127 2158 0.678950 TGAGGCACAACTGTCATCGA 59.321 50.000 0.00 0.00 0.00 3.59
2266 2299 8.038862 ACCATCAATCCTAAATAGATGTGACT 57.961 34.615 0.00 0.00 35.50 3.41
2329 2363 5.079643 ACTAACATTTCCAAGTGCAGGAAT 58.920 37.500 6.73 0.00 44.14 3.01
2357 2391 8.908786 TTTTTGTCTTGACAGTATGAAGATCT 57.091 30.769 3.61 0.00 39.69 2.75
2405 2439 1.079503 CCTCGCAGTTTAGTTCAGCC 58.920 55.000 0.00 0.00 0.00 4.85
2410 2444 0.323629 CAGTTTAGTTCAGCCCCGGA 59.676 55.000 0.73 0.00 0.00 5.14
2439 2473 1.592223 GTCCTGTCTACCAAGCGCT 59.408 57.895 2.64 2.64 0.00 5.92
2628 2663 4.994907 TCTTCCGGACGAATATCAAAGA 57.005 40.909 8.43 0.00 0.00 2.52
2689 2724 2.355444 GTGCTTGCCAAGTTTTGCATTT 59.645 40.909 6.28 0.00 37.33 2.32
2701 2736 8.281893 CCAAGTTTTGCATTTAAAATAGGTGTG 58.718 33.333 0.00 0.00 32.71 3.82
2725 2760 5.673568 GCGTGTGTGCATTGTATACTTTGAT 60.674 40.000 4.17 0.00 34.15 2.57
2785 2820 6.628644 AGCTCTCTTTACCTCCATAGTTTT 57.371 37.500 0.00 0.00 0.00 2.43
2986 3023 2.149578 GCTTGATGCTGAATCGCCTAT 58.850 47.619 0.00 0.00 38.22 2.57
3382 3428 9.624373 AGCCAATTCAAATATATATCTAGCTGG 57.376 33.333 0.00 0.00 0.00 4.85
3385 3431 9.102757 CAATTCAAATATATATCTAGCTGGCGT 57.897 33.333 0.00 0.00 0.00 5.68
3390 3436 1.261480 ATATCTAGCTGGCGTCCCTG 58.739 55.000 0.00 0.00 0.00 4.45
3411 3457 4.083862 GCCACCTCGTCCACCTCC 62.084 72.222 0.00 0.00 0.00 4.30
3429 3475 2.815647 CTCGGCAGGCCTTTCGAC 60.816 66.667 19.68 3.76 0.00 4.20
3441 3487 1.140407 CTTTCGACGTCGCCATCCTC 61.140 60.000 32.19 0.00 39.60 3.71
3443 3489 4.907034 CGACGTCGCCATCCTCCG 62.907 72.222 26.59 0.00 0.00 4.63
3444 3490 3.823330 GACGTCGCCATCCTCCGT 61.823 66.667 0.00 0.00 0.00 4.69
3566 3624 0.614697 TTCCAGCTCGTCTCCATGGA 60.615 55.000 15.27 15.27 38.26 3.41
3571 3629 0.179097 GCTCGTCTCCATGGAAGGTC 60.179 60.000 17.00 2.04 0.00 3.85
3576 3634 3.967326 TCGTCTCCATGGAAGGTCATATT 59.033 43.478 17.00 0.00 0.00 1.28
3605 3663 1.863454 CCACTTCGTCTGCATAGCATC 59.137 52.381 0.00 0.00 38.13 3.91
3645 3703 1.225854 GCACATCGAGCTCAAACGC 60.226 57.895 15.40 5.47 0.00 4.84
3652 3710 3.249189 AGCTCAAACGCCTCCCCA 61.249 61.111 0.00 0.00 0.00 4.96
3654 3712 2.115291 GCTCAAACGCCTCCCCATC 61.115 63.158 0.00 0.00 0.00 3.51
3684 3745 1.278127 CCCATGGTCTTACCTTCGTGT 59.722 52.381 11.73 0.00 39.58 4.49
3694 3755 1.949465 ACCTTCGTGTTGTGAGGAAC 58.051 50.000 0.00 0.00 0.00 3.62
3695 3756 1.208535 ACCTTCGTGTTGTGAGGAACA 59.791 47.619 0.00 0.00 36.85 3.18
3696 3757 2.285083 CCTTCGTGTTGTGAGGAACAA 58.715 47.619 0.00 0.00 46.66 2.83
3707 3768 0.966920 GAGGAACAAGACACGGAGGA 59.033 55.000 0.00 0.00 0.00 3.71
3737 3798 0.178973 TGTGAGGAAGACACGGAGGA 60.179 55.000 0.00 0.00 40.61 3.71
3738 3799 1.187087 GTGAGGAAGACACGGAGGAT 58.813 55.000 0.00 0.00 0.00 3.24
3739 3800 1.134965 GTGAGGAAGACACGGAGGATG 60.135 57.143 0.00 0.00 0.00 3.51
3776 3897 2.691011 TGTTTTTCCCCAACACTGTAGC 59.309 45.455 0.00 0.00 0.00 3.58
3796 3929 3.083600 CTCATTCGCGGCCGTGAAC 62.084 63.158 45.90 22.17 45.62 3.18
3847 3980 2.280186 CCAAGATACGAGGCGCCC 60.280 66.667 26.15 14.23 0.00 6.13
3851 3984 4.944372 GATACGAGGCGCCCACCG 62.944 72.222 26.15 25.66 40.75 4.94
3893 4029 4.337060 CCGCTCACGTGTGTCGGA 62.337 66.667 31.26 9.31 44.11 4.55
3943 4079 7.500559 AGGTTCAAAAGATACCTATTCAGCATC 59.499 37.037 0.00 0.00 40.42 3.91
3991 4127 0.948623 TTGGTTGACGGATGCTGTCG 60.949 55.000 0.00 0.00 42.18 4.35
4030 4166 4.592485 ATCTGCTGGATTTCCTACTACG 57.408 45.455 0.00 0.00 36.82 3.51
4050 4186 5.708877 ACGCAGGAGGTATTCTATTCTAC 57.291 43.478 0.00 0.00 0.00 2.59
4112 4248 2.174360 ACCTACCAGAAACCGTCCTAC 58.826 52.381 0.00 0.00 0.00 3.18
4115 4251 2.538512 ACCAGAAACCGTCCTACAAC 57.461 50.000 0.00 0.00 0.00 3.32
4116 4252 1.269936 ACCAGAAACCGTCCTACAACG 60.270 52.381 0.00 0.00 42.24 4.10
4117 4253 1.269936 CCAGAAACCGTCCTACAACGT 60.270 52.381 0.00 0.00 41.01 3.99
4118 4254 2.056577 CAGAAACCGTCCTACAACGTC 58.943 52.381 0.00 0.00 41.01 4.34
4119 4255 1.959282 AGAAACCGTCCTACAACGTCT 59.041 47.619 0.00 0.00 41.01 4.18
4143 4279 4.359434 AGAAAGAGGTTTCCTTGAGGTC 57.641 45.455 0.00 0.00 42.84 3.85
4155 4291 1.002087 CTTGAGGTCAACCGTAGCCTT 59.998 52.381 0.00 0.00 42.08 4.35
4164 4300 0.756903 ACCGTAGCCTTTGTGTCACT 59.243 50.000 4.27 0.00 0.00 3.41
4185 4330 4.169508 CTGGTGATCTTCTCAAGTACACG 58.830 47.826 0.00 0.00 36.93 4.49
4187 4332 4.763279 TGGTGATCTTCTCAAGTACACGTA 59.237 41.667 0.00 0.00 36.93 3.57
4189 4334 6.600427 TGGTGATCTTCTCAAGTACACGTATA 59.400 38.462 0.00 0.00 36.93 1.47
4192 4337 9.171701 GTGATCTTCTCAAGTACACGTATATTC 57.828 37.037 0.00 0.00 35.07 1.75
4225 4370 2.170607 GCAAGACTCTATGGCCCACTTA 59.829 50.000 0.00 0.00 0.00 2.24
4249 4394 2.543641 CTCGTACGGGTTTTACCATCC 58.456 52.381 16.52 0.00 41.02 3.51
4277 4422 5.348986 TGATACTTTGAGCATAACGGAGAC 58.651 41.667 0.00 0.00 0.00 3.36
4290 4435 4.553330 AACGGAGACTGGTGACATAAAT 57.447 40.909 0.00 0.00 41.51 1.40
4297 4442 5.316167 AGACTGGTGACATAAATTGCTTCA 58.684 37.500 0.00 0.00 41.51 3.02
4308 4453 3.643159 AATTGCTTCAACGAAAGGGTC 57.357 42.857 0.00 0.00 0.00 4.46
4310 4455 1.593196 TGCTTCAACGAAAGGGTCAG 58.407 50.000 0.00 0.00 0.00 3.51
4318 4463 3.028094 ACGAAAGGGTCAGGATAGCTA 57.972 47.619 0.00 0.00 0.00 3.32
4360 4505 2.892425 CTGAATGTCTCCCGCGCC 60.892 66.667 0.00 0.00 0.00 6.53
4394 4542 1.678123 CCCTCTTGTGAGCATGGACAG 60.678 57.143 0.00 0.00 38.93 3.51
4396 4544 0.689055 TCTTGTGAGCATGGACAGCT 59.311 50.000 0.00 0.00 46.82 4.24
4407 4555 5.303971 AGCATGGACAGCTCTAATATTGTC 58.696 41.667 0.00 0.00 38.01 3.18
4621 4770 8.571336 CAAGTTCTTGAATCTCACAAGGTATTT 58.429 33.333 6.71 0.00 43.11 1.40
4723 4874 4.439253 AAGTTCAGTTTGAAGTAGGCCT 57.561 40.909 11.78 11.78 38.97 5.19
4921 5074 8.705594 AGCTATGATAACTTAGTTGCCTTAAGA 58.294 33.333 8.00 0.00 0.00 2.10
5258 5416 3.819564 TGCTGTGTCAGTCTTGTTAGT 57.180 42.857 0.00 0.00 33.43 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.807538 TAGACTCGCGGCGGTGAC 61.808 66.667 23.46 15.15 0.00 3.67
2 3 3.807538 GTAGACTCGCGGCGGTGA 61.808 66.667 23.46 7.35 0.00 4.02
3 4 4.111016 TGTAGACTCGCGGCGGTG 62.111 66.667 23.46 17.42 0.00 4.94
4 5 4.112341 GTGTAGACTCGCGGCGGT 62.112 66.667 23.46 18.55 0.00 5.68
5 6 4.849329 GGTGTAGACTCGCGGCGG 62.849 72.222 23.46 15.35 0.00 6.13
6 7 3.411418 ATGGTGTAGACTCGCGGCG 62.411 63.158 17.70 17.70 0.00 6.46
7 8 1.878522 CATGGTGTAGACTCGCGGC 60.879 63.158 6.13 0.00 0.00 6.53
8 9 1.226974 CCATGGTGTAGACTCGCGG 60.227 63.158 6.13 0.00 0.00 6.46
9 10 1.878522 GCCATGGTGTAGACTCGCG 60.879 63.158 14.67 0.00 0.00 5.87
10 11 1.521681 GGCCATGGTGTAGACTCGC 60.522 63.158 14.67 0.00 0.00 5.03
11 12 1.226974 CGGCCATGGTGTAGACTCG 60.227 63.158 14.67 1.58 0.00 4.18
12 13 0.460284 CACGGCCATGGTGTAGACTC 60.460 60.000 14.67 0.00 0.00 3.36
13 14 1.596934 CACGGCCATGGTGTAGACT 59.403 57.895 14.67 0.00 0.00 3.24
14 15 1.449601 CCACGGCCATGGTGTAGAC 60.450 63.158 10.50 0.00 34.77 2.59
15 16 1.610967 TCCACGGCCATGGTGTAGA 60.611 57.895 19.20 8.37 40.95 2.59
16 17 1.449601 GTCCACGGCCATGGTGTAG 60.450 63.158 19.20 6.00 40.95 2.74
17 18 2.666207 GTCCACGGCCATGGTGTA 59.334 61.111 19.20 0.00 40.95 2.90
18 19 4.344865 GGTCCACGGCCATGGTGT 62.345 66.667 19.20 9.85 40.95 4.16
19 20 3.859118 TTGGTCCACGGCCATGGTG 62.859 63.158 19.20 10.13 40.95 4.17
20 21 3.575247 TTGGTCCACGGCCATGGT 61.575 61.111 19.20 0.00 40.95 3.55
21 22 3.061848 GTTGGTCCACGGCCATGG 61.062 66.667 12.95 12.95 41.57 3.66
22 23 3.061848 GGTTGGTCCACGGCCATG 61.062 66.667 2.24 0.00 35.71 3.66
23 24 4.715523 CGGTTGGTCCACGGCCAT 62.716 66.667 2.24 0.00 35.71 4.40
32 33 4.699522 AGAAGGCGCCGGTTGGTC 62.700 66.667 23.20 12.52 37.67 4.02
33 34 4.699522 GAGAAGGCGCCGGTTGGT 62.700 66.667 23.20 3.31 37.67 3.67
44 45 3.415087 CAGGGGCCAGGGAGAAGG 61.415 72.222 4.39 0.00 0.00 3.46
45 46 4.120755 GCAGGGGCCAGGGAGAAG 62.121 72.222 4.39 0.00 0.00 2.85
46 47 4.682714 AGCAGGGGCCAGGGAGAA 62.683 66.667 4.39 0.00 42.56 2.87
49 50 4.346889 TACAGCAGGGGCCAGGGA 62.347 66.667 4.39 0.00 42.56 4.20
50 51 4.115199 GTACAGCAGGGGCCAGGG 62.115 72.222 4.39 0.00 42.56 4.45
51 52 4.473520 CGTACAGCAGGGGCCAGG 62.474 72.222 4.39 0.00 42.56 4.45
52 53 3.390521 TCGTACAGCAGGGGCCAG 61.391 66.667 4.39 0.00 42.56 4.85
53 54 3.702048 GTCGTACAGCAGGGGCCA 61.702 66.667 4.39 0.00 42.56 5.36
54 55 4.814294 CGTCGTACAGCAGGGGCC 62.814 72.222 0.00 0.00 42.56 5.80
55 56 4.814294 CCGTCGTACAGCAGGGGC 62.814 72.222 0.00 0.00 41.61 5.80
56 57 4.143333 CCCGTCGTACAGCAGGGG 62.143 72.222 5.14 3.09 38.44 4.79
57 58 4.814294 GCCCGTCGTACAGCAGGG 62.814 72.222 7.98 7.98 44.72 4.45
58 59 4.814294 GGCCCGTCGTACAGCAGG 62.814 72.222 0.00 0.00 0.00 4.85
59 60 4.814294 GGGCCCGTCGTACAGCAG 62.814 72.222 5.69 0.00 0.00 4.24
61 62 4.509737 GAGGGCCCGTCGTACAGC 62.510 72.222 18.44 0.00 0.00 4.40
62 63 3.834799 GGAGGGCCCGTCGTACAG 61.835 72.222 18.44 0.00 0.00 2.74
79 80 4.697756 TGGAAACCCGCAGAGCCG 62.698 66.667 0.00 0.00 0.00 5.52
80 81 3.056328 GTGGAAACCCGCAGAGCC 61.056 66.667 0.00 0.00 34.41 4.70
81 82 3.423154 CGTGGAAACCCGCAGAGC 61.423 66.667 0.00 0.00 33.89 4.09
88 89 3.365265 CAGCCAGCGTGGAAACCC 61.365 66.667 8.04 0.00 40.96 4.11
89 90 2.594592 ACAGCCAGCGTGGAAACC 60.595 61.111 8.04 0.00 40.96 3.27
90 91 2.639286 CACAGCCAGCGTGGAAAC 59.361 61.111 8.04 0.00 40.96 2.78
91 92 3.286751 GCACAGCCAGCGTGGAAA 61.287 61.111 13.63 0.00 40.96 3.13
109 110 4.659172 TTGGGAAGCGGTGGCCTG 62.659 66.667 3.32 0.00 41.24 4.85
110 111 4.660938 GTTGGGAAGCGGTGGCCT 62.661 66.667 3.32 0.00 41.24 5.19
111 112 4.966787 TGTTGGGAAGCGGTGGCC 62.967 66.667 0.00 0.00 41.24 5.36
112 113 3.365265 CTGTTGGGAAGCGGTGGC 61.365 66.667 0.00 0.00 40.37 5.01
113 114 1.966451 GTCTGTTGGGAAGCGGTGG 60.966 63.158 0.00 0.00 0.00 4.61
114 115 1.966451 GGTCTGTTGGGAAGCGGTG 60.966 63.158 0.00 0.00 0.00 4.94
115 116 2.430367 GGTCTGTTGGGAAGCGGT 59.570 61.111 0.00 0.00 0.00 5.68
116 117 1.966451 GTGGTCTGTTGGGAAGCGG 60.966 63.158 0.00 0.00 0.00 5.52
117 118 1.966451 GGTGGTCTGTTGGGAAGCG 60.966 63.158 0.00 0.00 0.00 4.68
118 119 0.890996 CAGGTGGTCTGTTGGGAAGC 60.891 60.000 0.00 0.00 38.64 3.86
119 120 3.329300 CAGGTGGTCTGTTGGGAAG 57.671 57.895 0.00 0.00 38.64 3.46
128 129 2.510906 GGTGTGCACAGGTGGTCT 59.489 61.111 22.40 0.00 0.00 3.85
129 130 2.972505 CGGTGTGCACAGGTGGTC 60.973 66.667 22.40 7.09 0.00 4.02
130 131 4.562425 CCGGTGTGCACAGGTGGT 62.562 66.667 22.40 0.00 40.98 4.16
131 132 4.248842 TCCGGTGTGCACAGGTGG 62.249 66.667 22.40 21.27 45.18 4.61
132 133 2.972505 GTCCGGTGTGCACAGGTG 60.973 66.667 22.40 12.75 45.18 4.00
133 134 4.250305 GGTCCGGTGTGCACAGGT 62.250 66.667 22.40 0.00 45.18 4.00
135 136 4.293648 TCGGTCCGGTGTGCACAG 62.294 66.667 22.40 9.69 0.00 3.66
136 137 4.595538 GTCGGTCCGGTGTGCACA 62.596 66.667 17.42 17.42 0.00 4.57
140 141 2.552585 AATAGCGTCGGTCCGGTGTG 62.553 60.000 12.29 0.00 39.18 3.82
141 142 2.275547 GAATAGCGTCGGTCCGGTGT 62.276 60.000 12.29 0.00 39.18 4.16
142 143 1.588139 GAATAGCGTCGGTCCGGTG 60.588 63.158 12.29 5.33 39.18 4.94
143 144 1.722636 GAGAATAGCGTCGGTCCGGT 61.723 60.000 12.29 0.00 41.95 5.28
144 145 1.008767 GAGAATAGCGTCGGTCCGG 60.009 63.158 12.29 0.00 0.00 5.14
145 146 0.381089 AAGAGAATAGCGTCGGTCCG 59.619 55.000 4.39 4.39 0.00 4.79
146 147 1.597445 CGAAGAGAATAGCGTCGGTCC 60.597 57.143 0.00 0.00 34.43 4.46
147 148 1.744374 CGAAGAGAATAGCGTCGGTC 58.256 55.000 0.00 0.00 34.43 4.79
148 149 0.248539 GCGAAGAGAATAGCGTCGGT 60.249 55.000 1.19 1.19 37.64 4.69
149 150 0.029567 AGCGAAGAGAATAGCGTCGG 59.970 55.000 0.00 0.00 37.64 4.79
150 151 1.116436 CAGCGAAGAGAATAGCGTCG 58.884 55.000 0.00 0.00 39.61 5.12
151 152 0.849579 GCAGCGAAGAGAATAGCGTC 59.150 55.000 0.00 0.00 34.34 5.19
152 153 0.457851 AGCAGCGAAGAGAATAGCGT 59.542 50.000 0.00 0.00 34.34 5.07
153 154 1.127701 GAGCAGCGAAGAGAATAGCG 58.872 55.000 0.00 0.00 34.34 4.26
154 155 1.496934 GGAGCAGCGAAGAGAATAGC 58.503 55.000 0.00 0.00 0.00 2.97
155 156 1.066303 ACGGAGCAGCGAAGAGAATAG 59.934 52.381 0.00 0.00 0.00 1.73
156 157 1.103803 ACGGAGCAGCGAAGAGAATA 58.896 50.000 0.00 0.00 0.00 1.75
157 158 1.103803 TACGGAGCAGCGAAGAGAAT 58.896 50.000 0.00 0.00 0.00 2.40
158 159 0.170561 GTACGGAGCAGCGAAGAGAA 59.829 55.000 0.00 0.00 0.00 2.87
159 160 1.654954 GGTACGGAGCAGCGAAGAGA 61.655 60.000 0.00 0.00 0.00 3.10
160 161 1.226717 GGTACGGAGCAGCGAAGAG 60.227 63.158 0.00 0.00 0.00 2.85
161 162 2.882876 GGTACGGAGCAGCGAAGA 59.117 61.111 0.00 0.00 0.00 2.87
192 193 2.887568 GAGCATGACCGCCGTGAG 60.888 66.667 0.00 0.00 33.60 3.51
193 194 3.647649 CTGAGCATGACCGCCGTGA 62.648 63.158 0.00 0.00 33.60 4.35
194 195 3.190849 CTGAGCATGACCGCCGTG 61.191 66.667 0.00 0.00 34.90 4.94
195 196 3.381983 TCTGAGCATGACCGCCGT 61.382 61.111 0.00 0.00 0.00 5.68
196 197 2.887568 GTCTGAGCATGACCGCCG 60.888 66.667 0.00 0.00 0.00 6.46
197 198 2.103042 GTGTCTGAGCATGACCGCC 61.103 63.158 0.00 0.00 0.00 6.13
198 199 2.103042 GGTGTCTGAGCATGACCGC 61.103 63.158 0.00 0.00 0.00 5.68
199 200 1.807165 CGGTGTCTGAGCATGACCG 60.807 63.158 5.61 5.61 43.22 4.79
200 201 2.103042 GCGGTGTCTGAGCATGACC 61.103 63.158 0.00 0.00 0.00 4.02
201 202 2.103042 GGCGGTGTCTGAGCATGAC 61.103 63.158 0.00 0.00 0.00 3.06
202 203 1.902765 ATGGCGGTGTCTGAGCATGA 61.903 55.000 0.00 0.00 0.00 3.07
203 204 1.450848 ATGGCGGTGTCTGAGCATG 60.451 57.895 0.00 0.00 0.00 4.06
204 205 1.450848 CATGGCGGTGTCTGAGCAT 60.451 57.895 0.00 0.00 0.00 3.79
205 206 2.046988 CATGGCGGTGTCTGAGCA 60.047 61.111 0.00 0.00 0.00 4.26
206 207 3.503363 GCATGGCGGTGTCTGAGC 61.503 66.667 0.00 0.00 0.00 4.26
207 208 1.434622 GATGCATGGCGGTGTCTGAG 61.435 60.000 2.46 0.00 0.00 3.35
208 209 1.450134 GATGCATGGCGGTGTCTGA 60.450 57.895 2.46 0.00 0.00 3.27
209 210 0.179076 TAGATGCATGGCGGTGTCTG 60.179 55.000 2.46 0.00 0.00 3.51
210 211 0.541392 TTAGATGCATGGCGGTGTCT 59.459 50.000 2.46 0.00 0.00 3.41
211 212 0.657840 GTTAGATGCATGGCGGTGTC 59.342 55.000 2.46 0.00 0.00 3.67
212 213 0.253044 AGTTAGATGCATGGCGGTGT 59.747 50.000 2.46 0.00 0.00 4.16
213 214 1.064505 CAAGTTAGATGCATGGCGGTG 59.935 52.381 2.46 0.00 0.00 4.94
214 215 1.382522 CAAGTTAGATGCATGGCGGT 58.617 50.000 2.46 0.00 0.00 5.68
215 216 0.029834 GCAAGTTAGATGCATGGCGG 59.970 55.000 2.46 0.00 43.29 6.13
216 217 3.539253 GCAAGTTAGATGCATGGCG 57.461 52.632 2.46 0.00 43.29 5.69
334 335 2.881074 ACGACATGAAAGAGTCATCCG 58.119 47.619 0.00 6.26 44.01 4.18
352 353 2.916423 CGCGCAGATGAAGCTACG 59.084 61.111 8.75 0.00 0.00 3.51
353 354 1.493950 ATGCGCGCAGATGAAGCTAC 61.494 55.000 38.44 1.80 0.00 3.58
377 378 1.593196 GCGCTACTTCATGGGCAATA 58.407 50.000 0.00 0.00 41.00 1.90
399 400 3.669824 GCACGTGACGAGATGACTAGAAA 60.670 47.826 22.23 0.00 0.00 2.52
435 442 7.268586 ACGACTCAGATATTGCTGTTTTCTAT 58.731 34.615 0.00 0.00 37.20 1.98
449 456 2.214387 TCGCTACGACGACTCAGATA 57.786 50.000 0.00 0.00 37.09 1.98
565 572 8.318412 TCCAACAATGATAACTAGTATGTGTGT 58.682 33.333 0.00 0.00 0.00 3.72
703 713 8.726068 GCTTAGTTTGCTCTTCTCTTCTTTATT 58.274 33.333 0.00 0.00 0.00 1.40
704 714 7.880195 TGCTTAGTTTGCTCTTCTCTTCTTTAT 59.120 33.333 0.00 0.00 0.00 1.40
705 715 7.217200 TGCTTAGTTTGCTCTTCTCTTCTTTA 58.783 34.615 0.00 0.00 0.00 1.85
706 716 6.058183 TGCTTAGTTTGCTCTTCTCTTCTTT 58.942 36.000 0.00 0.00 0.00 2.52
707 717 5.615289 TGCTTAGTTTGCTCTTCTCTTCTT 58.385 37.500 0.00 0.00 0.00 2.52
708 718 5.220710 TGCTTAGTTTGCTCTTCTCTTCT 57.779 39.130 0.00 0.00 0.00 2.85
709 719 5.931441 TTGCTTAGTTTGCTCTTCTCTTC 57.069 39.130 0.00 0.00 0.00 2.87
710 720 6.000219 TGATTGCTTAGTTTGCTCTTCTCTT 59.000 36.000 0.00 0.00 0.00 2.85
711 721 5.555017 TGATTGCTTAGTTTGCTCTTCTCT 58.445 37.500 0.00 0.00 0.00 3.10
712 722 5.869753 TGATTGCTTAGTTTGCTCTTCTC 57.130 39.130 0.00 0.00 0.00 2.87
713 723 5.532406 TGTTGATTGCTTAGTTTGCTCTTCT 59.468 36.000 0.00 0.00 0.00 2.85
998 1028 3.405093 GATCCAGCCACGGCCATGA 62.405 63.158 0.00 0.00 43.17 3.07
1024 1054 1.153025 GCATCATCCAGCCAGCAGA 60.153 57.895 0.00 0.00 0.00 4.26
1115 1145 1.676678 GCCCGATCCTGCACTAGTGA 61.677 60.000 27.08 10.55 0.00 3.41
1116 1146 1.227380 GCCCGATCCTGCACTAGTG 60.227 63.158 18.93 18.93 0.00 2.74
1117 1147 1.264749 TTGCCCGATCCTGCACTAGT 61.265 55.000 3.44 0.00 37.18 2.57
1118 1148 0.107456 ATTGCCCGATCCTGCACTAG 59.893 55.000 3.44 0.00 37.18 2.57
1119 1149 1.344438 CTATTGCCCGATCCTGCACTA 59.656 52.381 3.44 2.93 37.18 2.74
1120 1150 0.107456 CTATTGCCCGATCCTGCACT 59.893 55.000 3.44 1.94 37.18 4.40
1121 1151 1.510480 GCTATTGCCCGATCCTGCAC 61.510 60.000 3.44 0.00 37.18 4.57
1122 1152 1.227943 GCTATTGCCCGATCCTGCA 60.228 57.895 0.00 0.00 35.27 4.41
1123 1153 1.227943 TGCTATTGCCCGATCCTGC 60.228 57.895 0.00 0.00 38.71 4.85
1124 1154 0.886490 GGTGCTATTGCCCGATCCTG 60.886 60.000 0.00 0.00 38.71 3.86
1125 1155 1.451936 GGTGCTATTGCCCGATCCT 59.548 57.895 0.00 0.00 38.71 3.24
1126 1156 4.065110 GGTGCTATTGCCCGATCC 57.935 61.111 0.00 0.00 38.71 3.36
1130 1160 2.437716 AACCGGTGCTATTGCCCG 60.438 61.111 8.52 17.41 45.75 6.13
1131 1161 2.469516 CGAACCGGTGCTATTGCCC 61.470 63.158 8.52 0.00 38.71 5.36
1132 1162 0.460635 TACGAACCGGTGCTATTGCC 60.461 55.000 8.52 0.00 38.71 4.52
1133 1163 1.326548 CTTACGAACCGGTGCTATTGC 59.673 52.381 8.52 0.00 40.20 3.56
1134 1164 1.931172 CCTTACGAACCGGTGCTATTG 59.069 52.381 8.52 0.00 0.00 1.90
1135 1165 1.741394 GCCTTACGAACCGGTGCTATT 60.741 52.381 8.52 0.00 0.00 1.73
1136 1166 0.179092 GCCTTACGAACCGGTGCTAT 60.179 55.000 8.52 0.00 0.00 2.97
1137 1167 1.216178 GCCTTACGAACCGGTGCTA 59.784 57.895 8.52 0.00 0.00 3.49
1138 1168 2.047560 GCCTTACGAACCGGTGCT 60.048 61.111 8.52 0.00 0.00 4.40
1139 1169 3.122971 GGCCTTACGAACCGGTGC 61.123 66.667 8.52 4.53 0.00 5.01
1140 1170 2.435410 GGGCCTTACGAACCGGTG 60.435 66.667 8.52 0.00 0.00 4.94
1141 1171 1.771783 AAAGGGCCTTACGAACCGGT 61.772 55.000 21.25 0.00 0.00 5.28
1142 1172 0.249955 TAAAGGGCCTTACGAACCGG 59.750 55.000 21.25 0.00 0.00 5.28
1143 1173 1.066645 ACTAAAGGGCCTTACGAACCG 60.067 52.381 21.25 5.60 0.00 4.44
1144 1174 2.353323 CACTAAAGGGCCTTACGAACC 58.647 52.381 21.25 0.00 0.00 3.62
1145 1175 1.736126 GCACTAAAGGGCCTTACGAAC 59.264 52.381 21.25 5.99 0.00 3.95
1146 1176 1.339342 GGCACTAAAGGGCCTTACGAA 60.339 52.381 21.25 4.81 46.74 3.85
1147 1177 0.251073 GGCACTAAAGGGCCTTACGA 59.749 55.000 21.25 7.25 46.74 3.43
1148 1178 2.776659 GGCACTAAAGGGCCTTACG 58.223 57.895 21.25 15.66 46.74 3.18
1153 1183 2.035155 AACCGGCACTAAAGGGCC 59.965 61.111 13.51 13.51 46.80 5.80
1154 1184 2.044555 GGAACCGGCACTAAAGGGC 61.045 63.158 0.00 0.00 0.00 5.19
1155 1185 0.034477 ATGGAACCGGCACTAAAGGG 60.034 55.000 0.00 0.00 0.00 3.95
1156 1186 2.681344 GTTATGGAACCGGCACTAAAGG 59.319 50.000 0.00 0.00 0.00 3.11
1157 1187 2.681344 GGTTATGGAACCGGCACTAAAG 59.319 50.000 0.00 0.00 45.73 1.85
1158 1188 2.713877 GGTTATGGAACCGGCACTAAA 58.286 47.619 0.00 0.00 45.73 1.85
1159 1189 2.406596 GGTTATGGAACCGGCACTAA 57.593 50.000 0.00 0.00 45.73 2.24
1167 1197 5.922080 CACTTTAGTGCCGGTTATGGAACC 61.922 50.000 1.90 0.00 44.16 3.62
1168 1198 3.126343 CACTTTAGTGCCGGTTATGGAAC 59.874 47.826 1.90 0.00 39.39 3.62
1169 1199 3.340034 CACTTTAGTGCCGGTTATGGAA 58.660 45.455 1.90 0.00 39.39 3.53
1170 1200 2.980568 CACTTTAGTGCCGGTTATGGA 58.019 47.619 1.90 0.00 39.39 3.41
1172 1202 4.115703 ACCACACTTTAGTGCCGGTTATG 61.116 47.826 15.26 3.94 46.63 1.90
1173 1203 2.039348 ACCACACTTTAGTGCCGGTTAT 59.961 45.455 15.26 0.00 46.63 1.89
1174 1204 1.417145 ACCACACTTTAGTGCCGGTTA 59.583 47.619 15.26 0.00 46.63 2.85
1175 1205 0.181824 ACCACACTTTAGTGCCGGTT 59.818 50.000 15.26 0.00 46.63 4.44
1188 1218 0.608308 GGGGGCTTTAGTGACCACAC 60.608 60.000 2.78 0.00 46.24 3.82
1189 1219 1.765074 GGGGGCTTTAGTGACCACA 59.235 57.895 2.78 0.00 0.00 4.17
1190 1220 4.736739 GGGGGCTTTAGTGACCAC 57.263 61.111 0.00 0.00 0.00 4.16
1209 1239 0.828677 CTGAACCGGTACTAAGGGGG 59.171 60.000 8.00 0.00 0.00 5.40
1210 1240 0.177373 GCTGAACCGGTACTAAGGGG 59.823 60.000 8.00 0.00 0.00 4.79
1211 1241 0.899720 TGCTGAACCGGTACTAAGGG 59.100 55.000 8.00 0.00 0.00 3.95
1212 1242 1.734707 CGTGCTGAACCGGTACTAAGG 60.735 57.143 8.00 0.00 0.00 2.69
1213 1243 1.200716 TCGTGCTGAACCGGTACTAAG 59.799 52.381 8.00 4.31 0.00 2.18
1214 1244 1.246649 TCGTGCTGAACCGGTACTAA 58.753 50.000 8.00 0.00 0.00 2.24
1215 1245 1.246649 TTCGTGCTGAACCGGTACTA 58.753 50.000 8.00 0.00 0.00 1.82
1216 1246 2.043625 TTCGTGCTGAACCGGTACT 58.956 52.632 8.00 0.00 0.00 2.73
1217 1247 4.659480 TTCGTGCTGAACCGGTAC 57.341 55.556 8.00 0.00 0.00 3.34
1229 1259 1.296056 CCCTTTAGCACCGGTTCGTG 61.296 60.000 2.97 0.00 36.80 4.35
1230 1260 1.004200 CCCTTTAGCACCGGTTCGT 60.004 57.895 2.97 0.00 0.00 3.85
1231 1261 2.396157 GCCCTTTAGCACCGGTTCG 61.396 63.158 2.97 0.00 0.00 3.95
1232 1262 0.891904 TTGCCCTTTAGCACCGGTTC 60.892 55.000 2.97 0.00 43.97 3.62
1233 1263 1.151908 TTGCCCTTTAGCACCGGTT 59.848 52.632 2.97 0.00 43.97 4.44
1234 1264 1.602605 GTTGCCCTTTAGCACCGGT 60.603 57.895 0.00 0.00 43.97 5.28
1235 1265 2.340328 GGTTGCCCTTTAGCACCGG 61.340 63.158 0.00 0.00 43.97 5.28
1236 1266 1.602323 TGGTTGCCCTTTAGCACCG 60.602 57.895 0.00 0.00 43.97 4.94
1237 1267 1.862602 CGTGGTTGCCCTTTAGCACC 61.863 60.000 0.00 0.00 43.97 5.01
1238 1268 1.170290 ACGTGGTTGCCCTTTAGCAC 61.170 55.000 0.00 0.00 43.97 4.40
1239 1269 1.149627 ACGTGGTTGCCCTTTAGCA 59.850 52.632 0.00 0.00 42.17 3.49
1240 1270 1.579429 CACGTGGTTGCCCTTTAGC 59.421 57.895 7.95 0.00 0.00 3.09
1241 1271 1.862602 GCCACGTGGTTGCCCTTTAG 61.863 60.000 33.92 6.07 37.57 1.85
1242 1272 1.899534 GCCACGTGGTTGCCCTTTA 60.900 57.895 33.92 0.00 37.57 1.85
1243 1273 3.223589 GCCACGTGGTTGCCCTTT 61.224 61.111 33.92 0.00 37.57 3.11
1244 1274 4.514585 TGCCACGTGGTTGCCCTT 62.515 61.111 33.92 0.00 37.57 3.95
1248 1278 4.012895 CTCGTGCCACGTGGTTGC 62.013 66.667 33.92 20.95 43.14 4.17
1249 1279 4.012895 GCTCGTGCCACGTGGTTG 62.013 66.667 33.92 23.28 43.14 3.77
1267 1297 3.333219 TTCAGGCCCCCAGAGCTG 61.333 66.667 0.00 0.00 0.00 4.24
1268 1298 3.013932 CTTCAGGCCCCCAGAGCT 61.014 66.667 0.00 0.00 0.00 4.09
1269 1299 4.811364 GCTTCAGGCCCCCAGAGC 62.811 72.222 0.00 0.00 34.27 4.09
1278 1308 1.742750 CGGTACTAAAGGGCTTCAGGC 60.743 57.143 0.00 0.00 40.90 4.85
1279 1309 1.134491 CCGGTACTAAAGGGCTTCAGG 60.134 57.143 0.00 0.00 0.00 3.86
1280 1310 1.553704 ACCGGTACTAAAGGGCTTCAG 59.446 52.381 4.49 0.00 0.00 3.02
1281 1311 1.648116 ACCGGTACTAAAGGGCTTCA 58.352 50.000 4.49 0.00 0.00 3.02
1282 1312 2.353323 CAACCGGTACTAAAGGGCTTC 58.647 52.381 8.00 0.00 0.00 3.86
1283 1313 1.003928 CCAACCGGTACTAAAGGGCTT 59.996 52.381 8.00 0.00 0.00 4.35
1284 1314 0.616891 CCAACCGGTACTAAAGGGCT 59.383 55.000 8.00 0.00 0.00 5.19
1285 1315 0.325933 ACCAACCGGTACTAAAGGGC 59.674 55.000 8.00 0.00 46.71 5.19
1309 1339 4.193865 CCAAACCTTATAGTACCGGTTGG 58.806 47.826 15.04 5.65 39.53 3.77
1310 1340 4.193865 CCCAAACCTTATAGTACCGGTTG 58.806 47.826 15.04 0.00 39.53 3.77
1311 1341 3.200605 CCCCAAACCTTATAGTACCGGTT 59.799 47.826 15.04 0.00 41.25 4.44
1312 1342 2.773661 CCCCAAACCTTATAGTACCGGT 59.226 50.000 13.98 13.98 0.00 5.28
1313 1343 2.773661 ACCCCAAACCTTATAGTACCGG 59.226 50.000 0.00 0.00 0.00 5.28
1314 1344 4.492494 AACCCCAAACCTTATAGTACCG 57.508 45.455 0.00 0.00 0.00 4.02
1315 1345 6.247676 TGAAAACCCCAAACCTTATAGTACC 58.752 40.000 0.00 0.00 0.00 3.34
1316 1346 6.944290 ACTGAAAACCCCAAACCTTATAGTAC 59.056 38.462 0.00 0.00 0.00 2.73
1317 1347 7.093965 ACTGAAAACCCCAAACCTTATAGTA 57.906 36.000 0.00 0.00 0.00 1.82
1318 1348 5.960704 ACTGAAAACCCCAAACCTTATAGT 58.039 37.500 0.00 0.00 0.00 2.12
1319 1349 6.911250 AACTGAAAACCCCAAACCTTATAG 57.089 37.500 0.00 0.00 0.00 1.31
1320 1350 7.678207 AAAACTGAAAACCCCAAACCTTATA 57.322 32.000 0.00 0.00 0.00 0.98
1321 1351 6.569127 AAAACTGAAAACCCCAAACCTTAT 57.431 33.333 0.00 0.00 0.00 1.73
1322 1352 7.344871 TCATAAAACTGAAAACCCCAAACCTTA 59.655 33.333 0.00 0.00 0.00 2.69
1323 1353 4.919774 AAAACTGAAAACCCCAAACCTT 57.080 36.364 0.00 0.00 0.00 3.50
1324 1354 5.663556 TCATAAAACTGAAAACCCCAAACCT 59.336 36.000 0.00 0.00 0.00 3.50
1325 1355 5.919755 TCATAAAACTGAAAACCCCAAACC 58.080 37.500 0.00 0.00 0.00 3.27
1326 1356 8.445275 AAATCATAAAACTGAAAACCCCAAAC 57.555 30.769 0.00 0.00 0.00 2.93
1327 1357 8.490311 AGAAATCATAAAACTGAAAACCCCAAA 58.510 29.630 0.00 0.00 0.00 3.28
1328 1358 8.028652 AGAAATCATAAAACTGAAAACCCCAA 57.971 30.769 0.00 0.00 0.00 4.12
1329 1359 7.610580 AGAAATCATAAAACTGAAAACCCCA 57.389 32.000 0.00 0.00 0.00 4.96
1330 1360 8.902540 AAAGAAATCATAAAACTGAAAACCCC 57.097 30.769 0.00 0.00 0.00 4.95
1372 1402 9.709600 GCAAACGAAAAAGAATTAAAATGGAAA 57.290 25.926 0.00 0.00 0.00 3.13
1373 1403 9.103861 AGCAAACGAAAAAGAATTAAAATGGAA 57.896 25.926 0.00 0.00 0.00 3.53
1374 1404 8.547069 CAGCAAACGAAAAAGAATTAAAATGGA 58.453 29.630 0.00 0.00 0.00 3.41
1375 1405 7.798052 CCAGCAAACGAAAAAGAATTAAAATGG 59.202 33.333 0.00 0.00 0.00 3.16
1376 1406 8.334632 ACCAGCAAACGAAAAAGAATTAAAATG 58.665 29.630 0.00 0.00 0.00 2.32
1377 1407 8.432110 ACCAGCAAACGAAAAAGAATTAAAAT 57.568 26.923 0.00 0.00 0.00 1.82
1378 1408 7.835634 ACCAGCAAACGAAAAAGAATTAAAA 57.164 28.000 0.00 0.00 0.00 1.52
1379 1409 9.535878 AATACCAGCAAACGAAAAAGAATTAAA 57.464 25.926 0.00 0.00 0.00 1.52
1380 1410 9.535878 AAATACCAGCAAACGAAAAAGAATTAA 57.464 25.926 0.00 0.00 0.00 1.40
1381 1411 9.535878 AAAATACCAGCAAACGAAAAAGAATTA 57.464 25.926 0.00 0.00 0.00 1.40
1382 1412 8.432110 AAAATACCAGCAAACGAAAAAGAATT 57.568 26.923 0.00 0.00 0.00 2.17
1383 1413 8.974408 GTAAAATACCAGCAAACGAAAAAGAAT 58.026 29.630 0.00 0.00 0.00 2.40
1384 1414 7.166142 CGTAAAATACCAGCAAACGAAAAAGAA 59.834 33.333 0.00 0.00 0.00 2.52
1385 1415 6.633634 CGTAAAATACCAGCAAACGAAAAAGA 59.366 34.615 0.00 0.00 0.00 2.52
1386 1416 6.633634 TCGTAAAATACCAGCAAACGAAAAAG 59.366 34.615 0.00 0.00 35.23 2.27
1387 1417 6.493116 TCGTAAAATACCAGCAAACGAAAAA 58.507 32.000 0.00 0.00 35.23 1.94
1388 1418 6.057627 TCGTAAAATACCAGCAAACGAAAA 57.942 33.333 0.00 0.00 35.23 2.29
1389 1419 5.670149 TCGTAAAATACCAGCAAACGAAA 57.330 34.783 0.00 0.00 35.23 3.46
1390 1420 5.866335 ATCGTAAAATACCAGCAAACGAA 57.134 34.783 0.00 0.00 40.71 3.85
1391 1421 6.101332 AGTATCGTAAAATACCAGCAAACGA 58.899 36.000 0.00 0.00 41.45 3.85
1392 1422 6.340537 AGTATCGTAAAATACCAGCAAACG 57.659 37.500 0.00 0.00 33.42 3.60
1393 1423 8.188531 TGTAGTATCGTAAAATACCAGCAAAC 57.811 34.615 0.00 0.00 33.42 2.93
1900 1930 0.322816 ACAGGTTCATCGGCATGCTT 60.323 50.000 18.92 0.00 0.00 3.91
1965 1995 7.156876 AGGAAAATTGTTAATGATCGCAGAA 57.843 32.000 0.00 0.00 43.58 3.02
2127 2158 4.279671 ACGATGTTCTTCAACAGAGACTCT 59.720 41.667 0.00 0.00 45.85 3.24
2248 2281 9.201989 TGAACTACAGTCACATCTATTTAGGAT 57.798 33.333 0.00 0.00 0.00 3.24
2357 2391 6.839124 AGTCATTATGTTTCATGGCTTGAA 57.161 33.333 11.38 11.38 42.62 2.69
2405 2439 0.535797 GGACCTTCTACTGTTCCGGG 59.464 60.000 0.00 0.00 0.00 5.73
2410 2444 4.087907 GGTAGACAGGACCTTCTACTGTT 58.912 47.826 26.16 6.55 44.79 3.16
2439 2473 3.570540 TCCATTCAACCAAACATGTCCA 58.429 40.909 0.00 0.00 0.00 4.02
2628 2663 5.387113 TTTGAGCCTGGTATGGTTATCAT 57.613 39.130 0.00 0.00 39.78 2.45
2689 2724 2.224549 GCACACACGCACACCTATTTTA 59.775 45.455 0.00 0.00 0.00 1.52
2701 2736 3.740044 AAGTATACAATGCACACACGC 57.260 42.857 5.50 0.00 0.00 5.34
2725 2760 6.883756 TGAGCATGATGGTTATACTTTCAACA 59.116 34.615 0.00 0.00 0.00 3.33
2813 2848 5.125739 CCCATGCCATGCAATAATTTTTGTT 59.874 36.000 9.87 0.00 43.62 2.83
2986 3023 5.562696 GCGACAGAAATTTCCTTGTTGATGA 60.563 40.000 22.79 0.00 0.00 2.92
3411 3457 4.082523 TCGAAAGGCCTGCCGAGG 62.083 66.667 21.45 3.40 43.19 4.63
3571 3629 3.802139 ACGAAGTGGTCATGCGTAATATG 59.198 43.478 0.00 0.00 42.51 1.78
3605 3663 2.108566 CAGCTGCAGGATCCGAGG 59.891 66.667 17.12 1.13 0.00 4.63
3633 3691 2.815647 GGGAGGCGTTTGAGCTCG 60.816 66.667 9.64 0.00 37.29 5.03
3645 3703 0.109342 GTATGGTGCAGATGGGGAGG 59.891 60.000 0.00 0.00 0.00 4.30
3679 3740 2.093921 TGTCTTGTTCCTCACAACACGA 60.094 45.455 0.00 0.00 40.71 4.35
3684 3745 1.483004 TCCGTGTCTTGTTCCTCACAA 59.517 47.619 0.00 0.00 43.55 3.33
3791 3924 1.268539 CCACGGCAAACTCTTGTTCAC 60.269 52.381 0.00 0.00 34.96 3.18
3847 3980 0.036010 ACTTCAGCTTCCATCCGGTG 60.036 55.000 0.00 0.00 0.00 4.94
3851 3984 0.807496 GCACACTTCAGCTTCCATCC 59.193 55.000 0.00 0.00 0.00 3.51
3893 4029 0.179037 CATGCCATGGTCGTCAGGAT 60.179 55.000 14.67 0.00 0.00 3.24
3904 4040 0.323633 TGAACCTCCCACATGCCATG 60.324 55.000 2.40 2.40 0.00 3.66
3943 4079 3.118112 AGGGCCAAGTATTCATGAGTCTG 60.118 47.826 6.18 0.00 0.00 3.51
3991 4127 7.404985 CAGCAGATATAGTTGTTGAATGTGAC 58.595 38.462 0.00 0.00 0.00 3.67
4030 4166 5.961396 TCGTAGAATAGAATACCTCCTGC 57.039 43.478 0.00 0.00 0.00 4.85
4050 4186 7.915508 TGTTAGGTGTTTCTGCAAATATATCG 58.084 34.615 0.00 0.00 0.00 2.92
4099 4235 1.959282 AGACGTTGTAGGACGGTTTCT 59.041 47.619 0.00 0.00 46.77 2.52
4100 4236 2.287788 TGAGACGTTGTAGGACGGTTTC 60.288 50.000 0.00 0.00 46.77 2.78
4101 4237 1.682854 TGAGACGTTGTAGGACGGTTT 59.317 47.619 0.00 0.00 46.77 3.27
4112 4248 4.024809 GGAAACCTCTTTCTTGAGACGTTG 60.025 45.833 0.00 0.00 36.71 4.10
4115 4251 3.996480 AGGAAACCTCTTTCTTGAGACG 58.004 45.455 0.00 0.00 36.71 4.18
4116 4252 5.368989 TCAAGGAAACCTCTTTCTTGAGAC 58.631 41.667 4.44 0.00 36.71 3.36
4117 4253 5.455326 CCTCAAGGAAACCTCTTTCTTGAGA 60.455 44.000 26.54 7.21 43.65 3.27
4118 4254 4.759183 CCTCAAGGAAACCTCTTTCTTGAG 59.241 45.833 21.27 21.27 42.52 3.02
4119 4255 4.166144 ACCTCAAGGAAACCTCTTTCTTGA 59.834 41.667 2.30 7.75 36.71 3.02
4143 4279 1.263217 GTGACACAAAGGCTACGGTTG 59.737 52.381 0.00 0.00 0.00 3.77
4155 4291 3.387699 TGAGAAGATCACCAGTGACACAA 59.612 43.478 8.59 0.00 43.11 3.33
4164 4300 3.572682 ACGTGTACTTGAGAAGATCACCA 59.427 43.478 0.00 0.00 37.77 4.17
4205 4350 4.487714 TTAAGTGGGCCATAGAGTCTTG 57.512 45.455 10.70 0.00 0.00 3.02
4214 4359 0.696501 ACGAGGTTTAAGTGGGCCAT 59.303 50.000 10.70 0.00 0.00 4.40
4241 4386 6.630413 GCTCAAAGTATCAGTGAGGATGGTAA 60.630 42.308 0.00 0.00 39.36 2.85
4249 4394 5.233050 CCGTTATGCTCAAAGTATCAGTGAG 59.767 44.000 0.00 0.00 41.44 3.51
4277 4422 4.853196 CGTTGAAGCAATTTATGTCACCAG 59.147 41.667 0.00 0.00 0.00 4.00
4290 4435 1.946768 CTGACCCTTTCGTTGAAGCAA 59.053 47.619 0.00 0.00 0.00 3.91
4297 4442 2.188817 AGCTATCCTGACCCTTTCGTT 58.811 47.619 0.00 0.00 0.00 3.85
4308 4453 4.823442 TGCCACAATTCATTAGCTATCCTG 59.177 41.667 0.00 0.00 0.00 3.86
4310 4455 5.972107 ATGCCACAATTCATTAGCTATCC 57.028 39.130 0.00 0.00 0.00 2.59
4318 4463 5.011943 AGGTGTTGTAATGCCACAATTCATT 59.988 36.000 0.00 0.00 40.36 2.57
4360 4505 1.207791 AGAGGGTACATCAGGGCTTG 58.792 55.000 0.00 0.00 0.00 4.01
4394 4542 9.717942 AGATCAAATAGTGGACAATATTAGAGC 57.282 33.333 5.57 0.00 32.13 4.09
4400 4548 8.373981 CCTCAGAGATCAAATAGTGGACAATAT 58.626 37.037 0.00 0.00 0.00 1.28
4407 4555 5.365025 TCCTTCCTCAGAGATCAAATAGTGG 59.635 44.000 0.00 0.00 0.00 4.00
4621 4770 2.175621 CCAGCGCGCAGATCAATCA 61.176 57.895 35.10 0.00 0.00 2.57
4723 4874 7.870954 GGGATATCGTGTCACAATAATAGTGAA 59.129 37.037 3.42 0.00 46.50 3.18
5258 5416 3.070302 GGGTCCCATACAAGTTTGCAAAA 59.930 43.478 14.67 0.00 0.00 2.44
5380 5539 4.038271 ACTGAGATGGCCATTCAAGAAA 57.962 40.909 21.84 0.99 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.