Multiple sequence alignment - TraesCS3B01G083600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G083600 chr3B 100.000 5057 0 0 1 5057 52778751 52773695 0.000000e+00 9339.0
1 TraesCS3B01G083600 chr3B 85.714 3514 425 48 568 4045 52854139 52850667 0.000000e+00 3637.0
2 TraesCS3B01G083600 chr3B 84.798 3151 441 31 912 4039 51243245 51246380 0.000000e+00 3131.0
3 TraesCS3B01G083600 chr3B 84.068 3132 431 43 959 4062 52839511 52836420 0.000000e+00 2957.0
4 TraesCS3B01G083600 chr3B 82.979 3149 491 34 970 4099 52742678 52739556 0.000000e+00 2804.0
5 TraesCS3B01G083600 chr3B 85.942 2383 259 30 393 2745 51771020 51773356 0.000000e+00 2475.0
6 TraesCS3B01G083600 chr3B 89.231 2015 79 40 35 1987 52435744 52437682 0.000000e+00 2392.0
7 TraesCS3B01G083600 chr3B 84.097 786 56 30 5 732 51227530 51228304 0.000000e+00 695.0
8 TraesCS3B01G083600 chr3B 88.845 502 21 12 4201 4698 51811978 51812448 7.300000e-163 584.0
9 TraesCS3B01G083600 chr3B 82.020 495 46 17 1 457 51946671 51947160 1.030000e-101 381.0
10 TraesCS3B01G083600 chr3B 92.105 228 15 3 507 732 51947335 51947561 8.170000e-83 318.0
11 TraesCS3B01G083600 chr3B 82.123 358 45 12 4204 4553 51928754 51929100 6.410000e-74 289.0
12 TraesCS3B01G083600 chr3B 77.871 357 47 18 4201 4553 52835757 52835429 5.170000e-45 193.0
13 TraesCS3B01G083600 chr3B 97.059 68 2 0 4796 4863 51812706 51812773 1.150000e-21 115.0
14 TraesCS3B01G083600 chr3B 87.879 66 1 3 4742 4801 676610751 676610687 2.530000e-08 71.3
15 TraesCS3B01G083600 chr3B 97.059 34 0 1 385 418 51876160 51876192 7.070000e-04 56.5
16 TraesCS3B01G083600 chr3D 86.391 3145 393 27 910 4033 30006612 30009742 0.000000e+00 3404.0
17 TraesCS3B01G083600 chr3D 83.084 3210 494 35 912 4099 30278236 30281418 0.000000e+00 2874.0
18 TraesCS3B01G083600 chr3D 78.995 1333 256 21 2780 4099 30060226 30061547 0.000000e+00 889.0
19 TraesCS3B01G083600 chr3D 90.253 277 20 4 1 277 30063803 30064072 6.230000e-94 355.0
20 TraesCS3B01G083600 chr3D 83.163 196 20 6 617 812 29970496 29970678 3.130000e-37 167.0
21 TraesCS3B01G083600 chr3D 96.970 33 1 0 4768 4800 297495396 297495364 7.070000e-04 56.5
22 TraesCS3B01G083600 chr3A 85.415 3154 420 32 910 4045 41537140 41540271 0.000000e+00 3240.0
23 TraesCS3B01G083600 chr3A 84.728 3156 443 31 913 4044 41149873 41153013 0.000000e+00 3121.0
24 TraesCS3B01G083600 chr3A 84.368 3205 473 21 912 4099 40936282 40939475 0.000000e+00 3118.0
25 TraesCS3B01G083600 chr3A 84.169 3133 426 43 959 4062 41117760 41120851 0.000000e+00 2974.0
26 TraesCS3B01G083600 chr3A 82.496 3205 518 32 912 4099 42016826 42020004 0.000000e+00 2771.0
27 TraesCS3B01G083600 chr3A 88.606 2045 174 24 568 2575 41354639 41356661 0.000000e+00 2431.0
28 TraesCS3B01G083600 chr3A 79.898 1771 329 24 2343 4097 41624148 41625907 0.000000e+00 1273.0
29 TraesCS3B01G083600 chr3A 86.842 380 23 12 22 383 41628639 41629009 2.840000e-107 399.0
30 TraesCS3B01G083600 chr3A 78.427 496 53 29 4201 4669 41121550 41122018 1.790000e-69 274.0
31 TraesCS3B01G083600 chr3A 91.765 170 12 2 564 732 40917690 40917858 8.460000e-58 235.0
32 TraesCS3B01G083600 chr3A 92.562 121 9 0 1 121 40915965 40916085 1.870000e-39 174.0
33 TraesCS3B01G083600 chr3A 100.000 31 0 0 4768 4798 698258852 698258822 1.970000e-04 58.4
34 TraesCS3B01G083600 chr3A 100.000 29 0 0 697 725 41368563 41368591 3.000000e-03 54.7
35 TraesCS3B01G083600 chr3A 94.286 35 2 0 385 419 41536695 41536729 3.000000e-03 54.7
36 TraesCS3B01G083600 chr7D 100.000 33 0 0 4768 4800 177987498 177987530 1.520000e-05 62.1
37 TraesCS3B01G083600 chr7D 88.679 53 1 3 4745 4797 454519351 454519398 5.470000e-05 60.2
38 TraesCS3B01G083600 chr2B 86.207 58 4 3 4742 4798 796537081 796537135 5.470000e-05 60.2
39 TraesCS3B01G083600 chr4D 100.000 30 0 0 4769 4798 338024634 338024663 7.070000e-04 56.5
40 TraesCS3B01G083600 chr4D 94.286 35 2 0 4768 4802 244715321 244715287 3.000000e-03 54.7
41 TraesCS3B01G083600 chr5D 83.871 62 5 4 4742 4801 499871383 499871325 3.000000e-03 54.7
42 TraesCS3B01G083600 chr6A 100.000 28 0 0 4745 4772 322705093 322705066 9.000000e-03 52.8
43 TraesCS3B01G083600 chr1A 100.000 28 0 0 4745 4772 551155028 551155055 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G083600 chr3B 52773695 52778751 5056 True 9339.00 9339 100.0000 1 5057 1 chr3B.!!$R2 5056
1 TraesCS3B01G083600 chr3B 52850667 52854139 3472 True 3637.00 3637 85.7140 568 4045 1 chr3B.!!$R3 3477
2 TraesCS3B01G083600 chr3B 51243245 51246380 3135 False 3131.00 3131 84.7980 912 4039 1 chr3B.!!$F2 3127
3 TraesCS3B01G083600 chr3B 52739556 52742678 3122 True 2804.00 2804 82.9790 970 4099 1 chr3B.!!$R1 3129
4 TraesCS3B01G083600 chr3B 51771020 51773356 2336 False 2475.00 2475 85.9420 393 2745 1 chr3B.!!$F3 2352
5 TraesCS3B01G083600 chr3B 52435744 52437682 1938 False 2392.00 2392 89.2310 35 1987 1 chr3B.!!$F6 1952
6 TraesCS3B01G083600 chr3B 52835429 52839511 4082 True 1575.00 2957 80.9695 959 4553 2 chr3B.!!$R5 3594
7 TraesCS3B01G083600 chr3B 51227530 51228304 774 False 695.00 695 84.0970 5 732 1 chr3B.!!$F1 727
8 TraesCS3B01G083600 chr3B 51811978 51812773 795 False 349.50 584 92.9520 4201 4863 2 chr3B.!!$F7 662
9 TraesCS3B01G083600 chr3B 51946671 51947561 890 False 349.50 381 87.0625 1 732 2 chr3B.!!$F8 731
10 TraesCS3B01G083600 chr3D 30006612 30009742 3130 False 3404.00 3404 86.3910 910 4033 1 chr3D.!!$F2 3123
11 TraesCS3B01G083600 chr3D 30278236 30281418 3182 False 2874.00 2874 83.0840 912 4099 1 chr3D.!!$F3 3187
12 TraesCS3B01G083600 chr3D 30060226 30064072 3846 False 622.00 889 84.6240 1 4099 2 chr3D.!!$F4 4098
13 TraesCS3B01G083600 chr3A 41149873 41153013 3140 False 3121.00 3121 84.7280 913 4044 1 chr3A.!!$F2 3131
14 TraesCS3B01G083600 chr3A 40936282 40939475 3193 False 3118.00 3118 84.3680 912 4099 1 chr3A.!!$F1 3187
15 TraesCS3B01G083600 chr3A 42016826 42020004 3178 False 2771.00 2771 82.4960 912 4099 1 chr3A.!!$F5 3187
16 TraesCS3B01G083600 chr3A 41354639 41356661 2022 False 2431.00 2431 88.6060 568 2575 1 chr3A.!!$F3 2007
17 TraesCS3B01G083600 chr3A 41536695 41540271 3576 False 1647.35 3240 89.8505 385 4045 2 chr3A.!!$F8 3660
18 TraesCS3B01G083600 chr3A 41117760 41122018 4258 False 1624.00 2974 81.2980 959 4669 2 chr3A.!!$F7 3710
19 TraesCS3B01G083600 chr3A 41624148 41629009 4861 False 836.00 1273 83.3700 22 4097 2 chr3A.!!$F9 4075
20 TraesCS3B01G083600 chr3A 40915965 40917858 1893 False 204.50 235 92.1635 1 732 2 chr3A.!!$F6 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.110486 GTTGGTCCACTGGTCACCAT 59.890 55.0 9.03 0.0 39.97 3.55 F
233 234 0.470456 TCTGTAACACGGTGGGAGGT 60.470 55.0 13.48 0.0 0.00 3.85 F
752 2201 1.055040 AAAGACTCAGTGGCAGCTCT 58.945 50.0 0.00 0.0 0.00 4.09 F
2195 3700 0.890996 GGGAAATATGCTGGCTCCCG 60.891 60.0 1.93 0.0 36.62 5.14 F
2873 4381 0.107456 CTGAGCTTGACAGGGTGTGT 59.893 55.0 0.00 0.0 44.49 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1990 3495 0.570218 AGCTCCCATCCCACCTCTAT 59.430 55.0 0.0 0.0 0.00 1.98 R
2178 3683 0.108585 TCCGGGAGCCAGCATATTTC 59.891 55.0 0.0 0.0 0.00 2.17 R
2636 4144 0.317479 AGTTCGGAAAGTCCTCACCG 59.683 55.0 0.0 0.0 45.61 4.94 R
3913 5443 0.032615 TGCAAACTGTCCAACCCCTT 60.033 50.0 0.0 0.0 0.00 3.95 R
4786 7291 0.111253 ATACCTACGTACCCCCTCCG 59.889 60.0 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.679139 CTCCAGTGTGCTTTTCACCA 58.321 50.000 0.00 0.00 45.03 4.17
43 44 7.253422 CAATTTCCTGAAGATATTGTTCGCTT 58.747 34.615 0.00 0.00 38.44 4.68
80 81 2.287009 CCACACGCAGAGGAAAAGTTTC 60.287 50.000 0.00 0.00 36.46 2.78
90 91 5.121454 CAGAGGAAAAGTTTCTCTTGATCCG 59.879 44.000 4.49 0.00 42.68 4.18
95 96 3.902881 AGTTTCTCTTGATCCGCTCAT 57.097 42.857 0.00 0.00 32.72 2.90
100 101 2.497273 TCTCTTGATCCGCTCATGTTCA 59.503 45.455 0.00 0.00 32.72 3.18
133 134 0.110486 GTTGGTCCACTGGTCACCAT 59.890 55.000 9.03 0.00 39.97 3.55
151 152 2.165030 CCATTGGTTGAAGTGATCCTGC 59.835 50.000 0.00 0.00 0.00 4.85
164 165 1.972660 ATCCTGCGGACTTACTGGCC 61.973 60.000 0.00 0.00 41.70 5.36
165 166 2.125106 CTGCGGACTTACTGGCCC 60.125 66.667 0.00 0.00 42.31 5.80
166 167 4.077184 TGCGGACTTACTGGCCCG 62.077 66.667 0.00 0.00 42.31 6.13
167 168 4.078516 GCGGACTTACTGGCCCGT 62.079 66.667 4.79 4.79 42.31 5.28
168 169 2.125673 CGGACTTACTGGCCCGTG 60.126 66.667 10.50 0.00 42.31 4.94
195 196 8.307483 CCGTGTTGAGGTATATATTTGATCTCT 58.693 37.037 0.00 0.00 0.00 3.10
198 199 9.987272 TGTTGAGGTATATATTTGATCTCTGTG 57.013 33.333 0.00 0.00 0.00 3.66
220 221 7.272244 TGTGTTCTGAACTTCTTGATCTGTAA 58.728 34.615 20.18 0.00 0.00 2.41
222 223 7.224753 GTGTTCTGAACTTCTTGATCTGTAACA 59.775 37.037 20.18 0.00 0.00 2.41
233 234 0.470456 TCTGTAACACGGTGGGAGGT 60.470 55.000 13.48 0.00 0.00 3.85
256 258 2.808543 CTCCTTGTGTTCACTAGTTGGC 59.191 50.000 11.80 0.00 0.00 4.52
257 259 1.880027 CCTTGTGTTCACTAGTTGGCC 59.120 52.381 0.00 0.00 0.00 5.36
270 272 5.527582 CACTAGTTGGCCCATAATCTTGTAC 59.472 44.000 0.00 0.00 0.00 2.90
274 276 4.534647 TGGCCCATAATCTTGTACCATT 57.465 40.909 0.00 0.00 0.00 3.16
275 277 5.654901 TGGCCCATAATCTTGTACCATTA 57.345 39.130 0.00 0.00 0.00 1.90
276 278 6.212840 TGGCCCATAATCTTGTACCATTAT 57.787 37.500 0.00 0.00 0.00 1.28
277 279 6.245408 TGGCCCATAATCTTGTACCATTATC 58.755 40.000 0.00 0.00 0.00 1.75
278 280 6.045459 TGGCCCATAATCTTGTACCATTATCT 59.955 38.462 0.00 0.00 0.00 1.98
279 281 7.238723 TGGCCCATAATCTTGTACCATTATCTA 59.761 37.037 0.00 0.00 0.00 1.98
280 282 8.275040 GGCCCATAATCTTGTACCATTATCTAT 58.725 37.037 0.00 0.00 0.00 1.98
319 446 2.513753 CAGCATGGTTTTCTGGTGGTA 58.486 47.619 0.00 0.00 37.26 3.25
422 1624 7.147811 TGGTTTGTAAGGTAAAGACTTGCAATT 60.148 33.333 0.00 0.00 45.39 2.32
423 1625 7.169140 GGTTTGTAAGGTAAAGACTTGCAATTG 59.831 37.037 0.00 0.00 45.39 2.32
428 1630 6.319141 AGGTAAAGACTTGCAATTGACTTC 57.681 37.500 10.34 0.00 0.00 3.01
439 1641 7.649306 ACTTGCAATTGACTTCACTTTCATTAC 59.351 33.333 10.34 0.00 0.00 1.89
444 1646 8.352201 CAATTGACTTCACTTTCATTACTCCAA 58.648 33.333 0.00 0.00 0.00 3.53
491 1865 2.242926 CAGGCTAGCACTGGAGCTATA 58.757 52.381 18.24 0.00 45.32 1.31
492 1866 2.830923 CAGGCTAGCACTGGAGCTATAT 59.169 50.000 18.24 0.00 45.32 0.86
495 1869 5.128499 CAGGCTAGCACTGGAGCTATATATT 59.872 44.000 18.24 0.00 45.32 1.28
496 1870 5.362430 AGGCTAGCACTGGAGCTATATATTC 59.638 44.000 18.24 0.00 45.32 1.75
497 1871 5.127845 GGCTAGCACTGGAGCTATATATTCA 59.872 44.000 18.24 0.00 45.32 2.57
498 1872 6.183360 GGCTAGCACTGGAGCTATATATTCAT 60.183 42.308 18.24 0.00 45.32 2.57
499 1873 6.922957 GCTAGCACTGGAGCTATATATTCATC 59.077 42.308 10.63 0.00 45.32 2.92
501 1875 7.250032 AGCACTGGAGCTATATATTCATCAA 57.750 36.000 0.00 0.00 44.50 2.57
503 1877 7.823310 AGCACTGGAGCTATATATTCATCAAAG 59.177 37.037 0.00 0.00 44.50 2.77
504 1878 7.821359 GCACTGGAGCTATATATTCATCAAAGA 59.179 37.037 0.00 0.00 0.00 2.52
652 2075 2.386829 CCATTGGATGGTGCCCTTAT 57.613 50.000 0.00 0.00 45.54 1.73
723 2146 6.130723 CACATGTAAATTTGCAAGCACAAAG 58.869 36.000 13.11 2.74 42.45 2.77
724 2147 6.018913 CACATGTAAATTTGCAAGCACAAAGA 60.019 34.615 13.11 0.00 42.45 2.52
726 2149 7.227116 ACATGTAAATTTGCAAGCACAAAGATT 59.773 29.630 13.11 0.00 42.45 2.40
727 2150 8.710551 CATGTAAATTTGCAAGCACAAAGATTA 58.289 29.630 13.11 5.35 42.45 1.75
735 2184 8.709386 TTGCAAGCACAAAGATTAAACTAAAA 57.291 26.923 0.00 0.00 0.00 1.52
739 2188 9.736023 CAAGCACAAAGATTAAACTAAAAGACT 57.264 29.630 0.00 0.00 0.00 3.24
740 2189 9.952188 AAGCACAAAGATTAAACTAAAAGACTC 57.048 29.630 0.00 0.00 0.00 3.36
745 2194 9.884465 CAAAGATTAAACTAAAAGACTCAGTGG 57.116 33.333 0.00 0.00 0.00 4.00
752 2201 1.055040 AAAGACTCAGTGGCAGCTCT 58.945 50.000 0.00 0.00 0.00 4.09
755 2204 1.534959 ACTCAGTGGCAGCTCTGGA 60.535 57.895 14.75 0.00 33.13 3.86
772 2221 4.851843 TCTGGAACTTAGTCCTCGATACA 58.148 43.478 0.00 0.00 38.62 2.29
773 2222 5.446860 TCTGGAACTTAGTCCTCGATACAT 58.553 41.667 0.00 0.00 38.62 2.29
774 2223 5.299531 TCTGGAACTTAGTCCTCGATACATG 59.700 44.000 0.00 0.00 38.62 3.21
775 2224 4.341235 TGGAACTTAGTCCTCGATACATGG 59.659 45.833 0.00 0.00 38.62 3.66
776 2225 4.299978 GAACTTAGTCCTCGATACATGGC 58.700 47.826 0.00 0.00 0.00 4.40
777 2226 3.296854 ACTTAGTCCTCGATACATGGCA 58.703 45.455 0.00 0.00 0.00 4.92
778 2227 3.319405 ACTTAGTCCTCGATACATGGCAG 59.681 47.826 0.00 0.00 0.00 4.85
957 2442 3.188048 GCCATTCTCAGAACAAGTCACTG 59.812 47.826 0.00 0.00 0.00 3.66
958 2443 4.384056 CCATTCTCAGAACAAGTCACTGT 58.616 43.478 0.00 0.00 33.93 3.55
1990 3495 4.436332 CCATCGAGTTGATCTCATGTCAA 58.564 43.478 0.00 0.00 42.88 3.18
2112 3617 1.559682 GGTCACCTCCCTCTTGCAATA 59.440 52.381 0.00 0.00 0.00 1.90
2160 3665 6.982160 AGCAGAGATCTAACAGAGAATGAT 57.018 37.500 0.00 0.00 37.85 2.45
2167 3672 8.729805 AGATCTAACAGAGAATGATTGGAAAC 57.270 34.615 0.00 0.00 37.85 2.78
2178 3683 2.103263 TGATTGGAAACGGTTTTTGGGG 59.897 45.455 7.65 0.00 0.00 4.96
2195 3700 0.890996 GGGAAATATGCTGGCTCCCG 60.891 60.000 1.93 0.00 36.62 5.14
2294 3799 7.116233 GTGTTTCCTTTATTGTGCTTTGTATGG 59.884 37.037 0.00 0.00 0.00 2.74
2437 3942 1.500474 TCGAAATCTCCTCCAGCCAT 58.500 50.000 0.00 0.00 0.00 4.40
2438 3943 1.139654 TCGAAATCTCCTCCAGCCATG 59.860 52.381 0.00 0.00 0.00 3.66
2459 3964 3.900601 TGTAATGAATTGTTTGGCCAGGT 59.099 39.130 5.11 0.00 0.00 4.00
2497 4002 3.063485 GACCTCTTGAGACAACTTGCTC 58.937 50.000 0.00 6.37 0.00 4.26
2561 4066 9.762381 TGAAACATTAAGGGGTAGAAATATGTT 57.238 29.630 0.00 0.00 36.76 2.71
2564 4069 8.747538 ACATTAAGGGGTAGAAATATGTTGAC 57.252 34.615 0.00 0.00 0.00 3.18
2608 4116 5.351740 GTCACCAAGAAGGATAAACTAGTGC 59.648 44.000 0.00 0.00 41.22 4.40
2616 4124 6.778559 AGAAGGATAAACTAGTGCTACCTAGG 59.221 42.308 7.41 7.41 39.01 3.02
2626 4134 5.081315 AGTGCTACCTAGGATGGATAAGT 57.919 43.478 17.98 0.00 0.00 2.24
2628 4136 5.905913 AGTGCTACCTAGGATGGATAAGTTT 59.094 40.000 17.98 0.00 0.00 2.66
2636 4144 8.265764 ACCTAGGATGGATAAGTTTGAAGTTAC 58.734 37.037 17.98 0.00 0.00 2.50
2651 4159 1.271656 AGTTACGGTGAGGACTTTCCG 59.728 52.381 12.18 12.18 42.75 4.30
2658 4166 2.135933 GTGAGGACTTTCCGAACTGTG 58.864 52.381 0.00 0.00 42.75 3.66
2688 4196 6.260936 GTCCACGGAGAATTGATGATACATTT 59.739 38.462 0.00 0.00 0.00 2.32
2752 4260 5.072741 ACTCACTTGTACAAAGCATTCCAT 58.927 37.500 10.03 0.00 0.00 3.41
2755 4263 5.414454 TCACTTGTACAAAGCATTCCATACC 59.586 40.000 10.03 0.00 0.00 2.73
2834 4342 1.284785 TCTTCCGGAATCCATTGGCTT 59.715 47.619 19.21 0.00 0.00 4.35
2835 4343 1.406539 CTTCCGGAATCCATTGGCTTG 59.593 52.381 19.21 0.00 0.00 4.01
2873 4381 0.107456 CTGAGCTTGACAGGGTGTGT 59.893 55.000 0.00 0.00 44.49 3.72
2882 4392 0.473755 ACAGGGTGTGTTGATCTGCA 59.526 50.000 0.00 0.00 34.94 4.41
2883 4393 1.162698 CAGGGTGTGTTGATCTGCAG 58.837 55.000 7.63 7.63 0.00 4.41
2899 4411 1.627329 TGCAGAGTCTTCCTTCAGCAT 59.373 47.619 0.00 0.00 0.00 3.79
2944 4456 7.897575 AGATGTCTTTATCTTCTTGACACAC 57.102 36.000 0.00 0.00 39.90 3.82
2950 4462 9.155975 GTCTTTATCTTCTTGACACACACATAT 57.844 33.333 0.00 0.00 0.00 1.78
2984 4496 5.428184 AGAGGGATAGGAAAACTGAAGTG 57.572 43.478 0.00 0.00 0.00 3.16
2991 4503 1.609072 GGAAAACTGAAGTGCCTCACC 59.391 52.381 0.00 0.00 34.49 4.02
3007 4519 4.189231 CCTCACCGAATTACGAGGATTTT 58.811 43.478 0.00 0.00 45.77 1.82
3008 4520 4.034048 CCTCACCGAATTACGAGGATTTTG 59.966 45.833 0.00 0.00 45.77 2.44
3014 4526 4.553429 CGAATTACGAGGATTTTGTGTTGC 59.447 41.667 0.00 0.00 45.77 4.17
3020 4532 3.189080 CGAGGATTTTGTGTTGCTGATGA 59.811 43.478 0.00 0.00 0.00 2.92
3034 4546 5.963176 TGCTGATGAAAGTGAAAATGCTA 57.037 34.783 0.00 0.00 0.00 3.49
3042 4554 9.282247 GATGAAAGTGAAAATGCTAATGTACAG 57.718 33.333 0.33 0.00 0.00 2.74
3084 4596 7.175347 AGAGTTGTCTTCTATGTTGCAGATA 57.825 36.000 0.00 0.00 0.00 1.98
3088 4600 5.118990 TGTCTTCTATGTTGCAGATAAGGC 58.881 41.667 0.00 0.00 0.00 4.35
3124 4636 1.386533 ATTGGAAAGAGCGGCTCATG 58.613 50.000 29.88 0.00 32.06 3.07
3187 4699 6.923928 AAGAACTAGTACTATCGTGGAGTC 57.076 41.667 2.33 0.00 0.00 3.36
3190 4702 5.307544 ACTAGTACTATCGTGGAGTCCAT 57.692 43.478 16.67 1.45 35.28 3.41
3348 4860 5.385198 ACCACCTGTTTGTATTCAGTGATT 58.615 37.500 0.00 0.00 0.00 2.57
3358 4870 6.114187 TGTATTCAGTGATTCACTTGTCCT 57.886 37.500 16.64 3.53 42.59 3.85
3361 4873 7.819415 TGTATTCAGTGATTCACTTGTCCTTAG 59.181 37.037 16.64 3.65 42.59 2.18
3364 4876 4.153117 CAGTGATTCACTTGTCCTTAGTGC 59.847 45.833 16.64 0.00 42.59 4.40
3372 4884 5.468746 TCACTTGTCCTTAGTGCATTTACAC 59.531 40.000 0.00 0.00 42.12 2.90
3421 4933 4.503123 GGCAGCTACCCAACTTGAAATTTT 60.503 41.667 0.00 0.00 0.00 1.82
3432 4944 8.337532 CCCAACTTGAAATTTTTGAGAATTGAC 58.662 33.333 2.56 0.00 30.06 3.18
3439 4951 4.488126 TTTTTGAGAATTGACGGAGCAG 57.512 40.909 0.00 0.00 0.00 4.24
3532 5044 3.258123 TGCTTTCCCTAAACTTGAATGGC 59.742 43.478 0.00 0.00 0.00 4.40
3537 5049 7.579531 GCTTTCCCTAAACTTGAATGGCTATTT 60.580 37.037 0.00 0.00 0.00 1.40
3541 5053 6.830838 CCCTAAACTTGAATGGCTATTTCTCT 59.169 38.462 0.00 0.00 0.00 3.10
3574 5086 1.700186 ACTGGGAGGAGTGGTCTTTTC 59.300 52.381 0.00 0.00 0.00 2.29
3580 5092 3.070748 GAGGAGTGGTCTTTTCTTGAGC 58.929 50.000 0.00 0.00 0.00 4.26
3589 5113 5.360714 TGGTCTTTTCTTGAGCAAGATGTTT 59.639 36.000 13.17 0.00 45.78 2.83
3593 5117 5.443185 TTTCTTGAGCAAGATGTTTCTGG 57.557 39.130 13.17 0.00 45.78 3.86
3596 5120 3.213206 TGAGCAAGATGTTTCTGGTGT 57.787 42.857 0.00 0.00 30.72 4.16
3624 5148 1.145819 GGAGGATGGAGCTGCTGAC 59.854 63.158 7.01 0.00 0.00 3.51
3635 5159 3.496155 GAGCTGCTGACATTTGTAAAGC 58.504 45.455 7.01 9.73 37.95 3.51
3636 5160 2.886523 AGCTGCTGACATTTGTAAAGCA 59.113 40.909 15.71 15.71 42.17 3.91
3637 5161 3.508793 AGCTGCTGACATTTGTAAAGCAT 59.491 39.130 16.49 5.17 42.89 3.79
3663 5190 5.583061 CCAATCTACACGGTTGCAACTATTA 59.417 40.000 27.64 13.34 0.00 0.98
3664 5191 6.260050 CCAATCTACACGGTTGCAACTATTAT 59.740 38.462 27.64 13.02 0.00 1.28
3684 5211 1.576421 CCGTTTGGAGAGCTTGCAC 59.424 57.895 0.00 0.00 37.49 4.57
3687 5214 1.508632 GTTTGGAGAGCTTGCACGTA 58.491 50.000 0.00 0.00 0.00 3.57
3741 5268 3.248024 ACAACTTGGAGAGGATACCACA 58.752 45.455 0.00 0.00 35.81 4.17
3786 5313 3.892284 TGGACTAAACAACTTGAAGGCA 58.108 40.909 0.00 0.00 0.00 4.75
3787 5314 4.469657 TGGACTAAACAACTTGAAGGCAT 58.530 39.130 0.00 0.00 0.00 4.40
3820 5350 0.972883 ACACCTCACTGAGCTCCTTC 59.027 55.000 12.15 0.00 0.00 3.46
3821 5351 0.108898 CACCTCACTGAGCTCCTTCG 60.109 60.000 12.15 0.00 0.00 3.79
3822 5352 0.540830 ACCTCACTGAGCTCCTTCGT 60.541 55.000 12.15 0.04 0.00 3.85
3834 5364 3.873952 AGCTCCTTCGTATTGAGAAATGC 59.126 43.478 0.00 0.00 0.00 3.56
3837 5367 4.693283 TCCTTCGTATTGAGAAATGCGAT 58.307 39.130 11.42 0.00 44.32 4.58
3875 5405 1.059913 AACCTCCCTCAAGTGACAGG 58.940 55.000 0.00 0.00 0.00 4.00
3883 5413 0.111061 TCAAGTGACAGGCCTGCAAT 59.889 50.000 33.06 25.39 0.00 3.56
3913 5443 4.695455 GCTGTCTGAACTTAAGCCATGTAA 59.305 41.667 1.29 0.00 0.00 2.41
3961 5491 1.510480 GCTGGGCGAGGATATGCAAC 61.510 60.000 0.00 0.00 0.00 4.17
3962 5492 0.179048 CTGGGCGAGGATATGCAACA 60.179 55.000 0.00 0.00 0.00 3.33
3963 5493 0.254462 TGGGCGAGGATATGCAACAA 59.746 50.000 0.00 0.00 0.00 2.83
3976 5506 6.765036 GGATATGCAACAAGAGATCTCTTCAA 59.235 38.462 30.93 16.72 46.13 2.69
4034 5564 3.204306 TCATGGTGAAGATCTGGATGC 57.796 47.619 0.00 0.00 0.00 3.91
4064 5594 3.055385 TGGTCTACCAGTTAGATGGCAAC 60.055 47.826 0.00 0.00 44.80 4.17
4087 5617 1.812571 CTGGCACAAGGTATGAACACC 59.187 52.381 0.00 0.00 38.70 4.16
4099 5629 7.241042 AGGTATGAACACCGCATATATACTT 57.759 36.000 0.00 0.00 43.84 2.24
4100 5630 7.321153 AGGTATGAACACCGCATATATACTTC 58.679 38.462 0.00 0.00 43.84 3.01
4103 5633 9.204570 GTATGAACACCGCATATATACTTCTTT 57.795 33.333 0.00 0.00 31.54 2.52
4104 5634 8.677148 ATGAACACCGCATATATACTTCTTTT 57.323 30.769 0.00 0.00 0.00 2.27
4105 5635 8.500753 TGAACACCGCATATATACTTCTTTTT 57.499 30.769 0.00 0.00 0.00 1.94
4106 5636 8.394877 TGAACACCGCATATATACTTCTTTTTG 58.605 33.333 0.00 0.00 0.00 2.44
4108 5638 8.142994 ACACCGCATATATACTTCTTTTTGAG 57.857 34.615 0.00 0.00 0.00 3.02
4109 5639 7.769044 ACACCGCATATATACTTCTTTTTGAGT 59.231 33.333 0.00 0.00 0.00 3.41
4110 5640 8.612619 CACCGCATATATACTTCTTTTTGAGTT 58.387 33.333 0.00 0.00 0.00 3.01
4111 5641 8.612619 ACCGCATATATACTTCTTTTTGAGTTG 58.387 33.333 0.00 0.00 0.00 3.16
4112 5642 8.070171 CCGCATATATACTTCTTTTTGAGTTGG 58.930 37.037 0.00 0.00 0.00 3.77
4113 5643 8.826710 CGCATATATACTTCTTTTTGAGTTGGA 58.173 33.333 0.00 0.00 0.00 3.53
4119 5649 5.965922 ACTTCTTTTTGAGTTGGAAGTTGG 58.034 37.500 0.00 0.00 42.29 3.77
4120 5650 5.714806 ACTTCTTTTTGAGTTGGAAGTTGGA 59.285 36.000 0.00 0.00 42.29 3.53
4121 5651 6.210584 ACTTCTTTTTGAGTTGGAAGTTGGAA 59.789 34.615 0.00 0.00 42.29 3.53
4138 5668 6.291377 AGTTGGAACACTGCATATATACTGG 58.709 40.000 0.00 0.00 39.29 4.00
4141 5671 7.368198 TGGAACACTGCATATATACTGGTTA 57.632 36.000 0.00 0.00 0.00 2.85
4146 5676 8.195165 ACACTGCATATATACTGGTTAGACAT 57.805 34.615 0.00 0.00 0.00 3.06
4188 5721 9.045223 TGATTCTCTGAACCATAATTCGTATTG 57.955 33.333 0.00 0.00 0.00 1.90
4190 5723 8.786826 TTCTCTGAACCATAATTCGTATTGTT 57.213 30.769 0.00 0.00 32.21 2.83
4324 6589 0.112995 TTGAGGAAGCCTGCCAATGT 59.887 50.000 0.00 0.00 31.76 2.71
4325 6590 0.322816 TGAGGAAGCCTGCCAATGTC 60.323 55.000 0.00 0.00 31.76 3.06
4333 6598 1.019673 CCTGCCAATGTCGAAGATGG 58.980 55.000 7.15 7.15 40.67 3.51
4340 6605 1.742761 ATGTCGAAGATGGGCAAGTG 58.257 50.000 0.00 0.00 40.67 3.16
4400 6665 7.631717 AGAAATTATAGTGTCTTCCTTTGGC 57.368 36.000 0.00 0.00 0.00 4.52
4401 6666 7.175104 AGAAATTATAGTGTCTTCCTTTGGCA 58.825 34.615 0.00 0.00 0.00 4.92
4403 6668 7.961326 AATTATAGTGTCTTCCTTTGGCAAT 57.039 32.000 0.00 0.00 0.00 3.56
4412 6677 0.609662 CCTTTGGCAATGTTCCCTGG 59.390 55.000 0.00 0.00 0.00 4.45
4430 6704 5.011738 TCCCTGGGAATACTGTATCGAATTC 59.988 44.000 14.48 0.00 0.00 2.17
4435 6709 5.176958 GGGAATACTGTATCGAATTCCGTTG 59.823 44.000 14.93 0.00 45.51 4.10
4445 6726 8.291032 TGTATCGAATTCCGTTGTGTTTATTTT 58.709 29.630 0.00 0.00 39.75 1.82
4667 6971 2.949106 CTTTGCCTGCGTGACCTG 59.051 61.111 0.00 0.00 0.00 4.00
4689 6993 1.040339 TGGCCAAACCCTGTGTTGTC 61.040 55.000 0.61 0.00 37.23 3.18
4722 7227 6.656693 CCCAAACTACATTGTCAGAGAGATTT 59.343 38.462 0.00 0.00 0.00 2.17
4748 7253 9.699410 TTTCTACTGGAAATCATGACCAAATAT 57.301 29.630 0.00 0.00 38.81 1.28
4753 7258 9.347240 ACTGGAAATCATGACCAAATATAAGAG 57.653 33.333 0.00 0.00 33.14 2.85
4754 7259 8.169977 TGGAAATCATGACCAAATATAAGAGC 57.830 34.615 0.00 0.00 0.00 4.09
4755 7260 7.041167 TGGAAATCATGACCAAATATAAGAGCG 60.041 37.037 0.00 0.00 0.00 5.03
4756 7261 7.041098 GGAAATCATGACCAAATATAAGAGCGT 60.041 37.037 0.00 0.00 0.00 5.07
4757 7262 7.807977 AATCATGACCAAATATAAGAGCGTT 57.192 32.000 0.00 0.00 0.00 4.84
4758 7263 7.807977 ATCATGACCAAATATAAGAGCGTTT 57.192 32.000 0.00 0.00 0.00 3.60
4759 7264 7.624360 TCATGACCAAATATAAGAGCGTTTT 57.376 32.000 0.00 0.00 0.00 2.43
4760 7265 8.050778 TCATGACCAAATATAAGAGCGTTTTT 57.949 30.769 0.00 0.00 0.00 1.94
4761 7266 7.967854 TCATGACCAAATATAAGAGCGTTTTTG 59.032 33.333 0.00 0.00 0.00 2.44
4762 7267 7.441890 TGACCAAATATAAGAGCGTTTTTGA 57.558 32.000 0.00 0.00 0.00 2.69
4763 7268 7.302524 TGACCAAATATAAGAGCGTTTTTGAC 58.697 34.615 0.00 0.00 0.00 3.18
4764 7269 7.041030 TGACCAAATATAAGAGCGTTTTTGACA 60.041 33.333 0.00 0.00 0.00 3.58
4765 7270 7.826690 ACCAAATATAAGAGCGTTTTTGACAT 58.173 30.769 0.00 0.00 0.00 3.06
4766 7271 8.303876 ACCAAATATAAGAGCGTTTTTGACATT 58.696 29.630 0.00 0.00 0.00 2.71
4767 7272 9.781834 CCAAATATAAGAGCGTTTTTGACATTA 57.218 29.630 0.00 0.00 0.00 1.90
4769 7274 9.485591 AAATATAAGAGCGTTTTTGACATTACG 57.514 29.630 0.00 0.00 37.09 3.18
4784 7289 8.771920 TTGACATTACGCTCTTATATTATGGG 57.228 34.615 0.00 0.00 0.00 4.00
4785 7290 8.129496 TGACATTACGCTCTTATATTATGGGA 57.871 34.615 0.00 0.00 0.00 4.37
4786 7291 8.033038 TGACATTACGCTCTTATATTATGGGAC 58.967 37.037 0.00 0.00 0.00 4.46
4787 7292 7.033791 ACATTACGCTCTTATATTATGGGACG 58.966 38.462 0.00 0.00 0.00 4.79
4788 7293 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4789 7294 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4790 7295 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4791 7296 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4792 7297 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4793 7298 4.359105 TCTTATATTATGGGACGGAGGGG 58.641 47.826 0.00 0.00 0.00 4.79
4794 7299 1.966845 ATATTATGGGACGGAGGGGG 58.033 55.000 0.00 0.00 0.00 5.40
4798 7303 2.645394 TATGGGACGGAGGGGGTACG 62.645 65.000 0.00 0.00 0.00 3.67
4863 7368 1.896220 TGAGGATGCCAAAGTGACAC 58.104 50.000 0.00 0.00 0.00 3.67
4866 7371 1.421268 AGGATGCCAAAGTGACACAGA 59.579 47.619 8.59 0.00 0.00 3.41
4884 7389 1.959899 GATGCAGACTGAACACGGCG 61.960 60.000 4.80 4.80 0.00 6.46
4885 7390 2.355837 GCAGACTGAACACGGCGA 60.356 61.111 16.62 0.00 0.00 5.54
4886 7391 1.738099 GCAGACTGAACACGGCGAT 60.738 57.895 16.62 0.00 0.00 4.58
4888 7393 0.388520 CAGACTGAACACGGCGATGA 60.389 55.000 16.62 0.00 0.00 2.92
4889 7394 0.532573 AGACTGAACACGGCGATGAT 59.467 50.000 16.62 2.54 0.00 2.45
4890 7395 0.647410 GACTGAACACGGCGATGATG 59.353 55.000 16.62 3.21 0.00 3.07
4891 7396 0.037326 ACTGAACACGGCGATGATGT 60.037 50.000 16.62 4.02 0.00 3.06
4892 7397 0.371301 CTGAACACGGCGATGATGTG 59.629 55.000 16.62 1.84 39.47 3.21
4893 7398 1.060937 GAACACGGCGATGATGTGC 59.939 57.895 16.62 1.35 37.11 4.57
4894 7399 1.634757 GAACACGGCGATGATGTGCA 61.635 55.000 16.62 0.00 37.11 4.57
4895 7400 1.911293 AACACGGCGATGATGTGCAC 61.911 55.000 16.62 10.75 37.11 4.57
4896 7401 2.047370 ACGGCGATGATGTGCACA 60.047 55.556 24.08 24.08 0.00 4.57
4897 7402 1.670730 ACGGCGATGATGTGCACAA 60.671 52.632 25.72 8.96 0.00 3.33
4898 7403 1.026182 ACGGCGATGATGTGCACAAT 61.026 50.000 25.72 14.18 0.00 2.71
4909 7414 3.354678 GCACAATGCGGTGAAGGT 58.645 55.556 7.10 0.00 41.32 3.50
4910 7415 1.210155 GCACAATGCGGTGAAGGTC 59.790 57.895 7.10 0.00 41.32 3.85
4911 7416 1.497278 CACAATGCGGTGAAGGTCG 59.503 57.895 0.00 0.00 41.32 4.79
4912 7417 1.070786 ACAATGCGGTGAAGGTCGT 59.929 52.632 0.00 0.00 0.00 4.34
4913 7418 0.534203 ACAATGCGGTGAAGGTCGTT 60.534 50.000 0.00 0.00 0.00 3.85
4914 7419 0.110238 CAATGCGGTGAAGGTCGTTG 60.110 55.000 0.00 0.00 0.00 4.10
4932 7437 1.078567 GTTGCTGAGCTCTGGGAGG 60.079 63.158 20.66 3.50 0.00 4.30
4933 7438 1.537397 TTGCTGAGCTCTGGGAGGT 60.537 57.895 20.66 0.00 43.43 3.85
4934 7439 0.252239 TTGCTGAGCTCTGGGAGGTA 60.252 55.000 20.66 0.00 40.67 3.08
4935 7440 0.685785 TGCTGAGCTCTGGGAGGTAG 60.686 60.000 20.66 5.96 40.67 3.18
4936 7441 2.026945 GCTGAGCTCTGGGAGGTAGC 62.027 65.000 20.66 12.00 40.67 3.58
4938 7443 1.075600 GAGCTCTGGGAGGTAGCCT 60.076 63.158 6.43 0.00 40.67 4.58
4939 7444 1.382420 AGCTCTGGGAGGTAGCCTG 60.382 63.158 0.00 0.00 38.70 4.85
4940 7445 3.100503 GCTCTGGGAGGTAGCCTGC 62.101 68.421 0.00 0.00 41.42 4.85
4942 7447 3.077556 CTGGGAGGTAGCCTGCGT 61.078 66.667 0.74 0.00 43.15 5.24
4944 7449 4.208686 GGGAGGTAGCCTGCGTCG 62.209 72.222 0.74 0.00 43.15 5.12
4956 7483 2.507324 GCGTCGGAGCTCTGGAAC 60.507 66.667 22.38 12.95 0.00 3.62
4959 7486 0.734253 CGTCGGAGCTCTGGAACTTG 60.734 60.000 22.38 2.89 0.00 3.16
4961 7488 1.743252 CGGAGCTCTGGAACTTGGC 60.743 63.158 15.27 0.00 0.00 4.52
4962 7489 1.743252 GGAGCTCTGGAACTTGGCG 60.743 63.158 14.64 0.00 0.00 5.69
4963 7490 1.293498 GAGCTCTGGAACTTGGCGA 59.707 57.895 6.43 0.00 0.00 5.54
4965 7492 0.326264 AGCTCTGGAACTTGGCGATT 59.674 50.000 0.00 0.00 0.00 3.34
4968 7495 0.960364 TCTGGAACTTGGCGATTGGC 60.960 55.000 0.00 0.00 42.51 4.52
4974 7511 2.749839 TTGGCGATTGGCGAAGGG 60.750 61.111 1.48 0.00 44.92 3.95
4980 7517 0.529992 CGATTGGCGAAGGGGACTAC 60.530 60.000 0.00 0.00 42.68 2.73
4982 7519 1.968050 ATTGGCGAAGGGGACTACGG 61.968 60.000 0.00 0.00 42.68 4.02
4983 7520 2.757099 GGCGAAGGGGACTACGGA 60.757 66.667 0.00 0.00 42.68 4.69
4984 7521 2.353610 GGCGAAGGGGACTACGGAA 61.354 63.158 0.00 0.00 42.68 4.30
4989 7526 0.412640 AAGGGGACTACGGAAGAGGT 59.587 55.000 0.00 0.00 42.68 3.85
4995 7532 1.544691 GACTACGGAAGAGGTGCTCAA 59.455 52.381 0.00 0.00 32.06 3.02
5002 7539 2.355108 GGAAGAGGTGCTCAACTGCATA 60.355 50.000 0.00 0.00 45.23 3.14
5005 7542 3.539604 AGAGGTGCTCAACTGCATATTC 58.460 45.455 0.00 0.00 45.23 1.75
5008 7545 3.693085 AGGTGCTCAACTGCATATTCAAG 59.307 43.478 0.00 0.00 45.23 3.02
5009 7546 3.432782 GTGCTCAACTGCATATTCAAGC 58.567 45.455 0.00 0.00 45.23 4.01
5010 7547 3.083293 TGCTCAACTGCATATTCAAGCA 58.917 40.909 10.90 10.90 38.12 3.91
5011 7548 3.506844 TGCTCAACTGCATATTCAAGCAA 59.493 39.130 11.91 1.86 40.73 3.91
5012 7549 3.855950 GCTCAACTGCATATTCAAGCAAC 59.144 43.478 0.00 0.00 40.73 4.17
5013 7550 4.380233 GCTCAACTGCATATTCAAGCAACT 60.380 41.667 0.00 0.00 40.73 3.16
5015 7552 6.459298 GCTCAACTGCATATTCAAGCAACTAT 60.459 38.462 0.00 0.00 40.73 2.12
5016 7553 7.019774 TCAACTGCATATTCAAGCAACTATC 57.980 36.000 0.00 0.00 40.73 2.08
5018 7555 6.615264 ACTGCATATTCAAGCAACTATCTG 57.385 37.500 0.00 0.00 40.73 2.90
5021 7558 5.297527 TGCATATTCAAGCAACTATCTGTGG 59.702 40.000 0.00 0.00 37.90 4.17
5022 7559 5.278169 GCATATTCAAGCAACTATCTGTGGG 60.278 44.000 0.00 0.00 0.00 4.61
5023 7560 3.788227 TTCAAGCAACTATCTGTGGGT 57.212 42.857 0.00 0.00 0.00 4.51
5024 7561 3.057969 TCAAGCAACTATCTGTGGGTG 57.942 47.619 0.00 0.00 29.51 4.61
5025 7562 2.637382 TCAAGCAACTATCTGTGGGTGA 59.363 45.455 0.00 0.00 29.51 4.02
5026 7563 3.072330 TCAAGCAACTATCTGTGGGTGAA 59.928 43.478 0.00 0.00 29.51 3.18
5028 7565 1.740025 GCAACTATCTGTGGGTGAAGC 59.260 52.381 0.00 0.00 0.00 3.86
5029 7566 2.002586 CAACTATCTGTGGGTGAAGCG 58.997 52.381 0.00 0.00 0.00 4.68
5030 7567 1.267121 ACTATCTGTGGGTGAAGCGT 58.733 50.000 0.00 0.00 0.00 5.07
5031 7568 1.623811 ACTATCTGTGGGTGAAGCGTT 59.376 47.619 0.00 0.00 0.00 4.84
5032 7569 2.829720 ACTATCTGTGGGTGAAGCGTTA 59.170 45.455 0.00 0.00 0.00 3.18
5033 7570 2.851263 ATCTGTGGGTGAAGCGTTAA 57.149 45.000 0.00 0.00 0.00 2.01
5035 7572 2.489971 TCTGTGGGTGAAGCGTTAAAG 58.510 47.619 0.00 0.00 0.00 1.85
5036 7573 2.158871 TCTGTGGGTGAAGCGTTAAAGT 60.159 45.455 0.00 0.00 0.00 2.66
5037 7574 3.069872 TCTGTGGGTGAAGCGTTAAAGTA 59.930 43.478 0.00 0.00 0.00 2.24
5039 7576 3.749088 TGTGGGTGAAGCGTTAAAGTATG 59.251 43.478 0.00 0.00 0.00 2.39
5040 7577 3.998341 GTGGGTGAAGCGTTAAAGTATGA 59.002 43.478 0.00 0.00 0.00 2.15
5041 7578 4.453136 GTGGGTGAAGCGTTAAAGTATGAA 59.547 41.667 0.00 0.00 0.00 2.57
5042 7579 4.693566 TGGGTGAAGCGTTAAAGTATGAAG 59.306 41.667 0.00 0.00 0.00 3.02
5043 7580 4.094442 GGGTGAAGCGTTAAAGTATGAAGG 59.906 45.833 0.00 0.00 0.00 3.46
5045 7582 3.687698 TGAAGCGTTAAAGTATGAAGGCC 59.312 43.478 0.00 0.00 37.19 5.19
5046 7583 2.277084 AGCGTTAAAGTATGAAGGCCG 58.723 47.619 0.00 0.00 37.19 6.13
5047 7584 2.093869 AGCGTTAAAGTATGAAGGCCGA 60.094 45.455 0.00 0.00 37.19 5.54
5048 7585 2.870411 GCGTTAAAGTATGAAGGCCGAT 59.130 45.455 0.00 0.00 31.81 4.18
5050 7587 4.369182 CGTTAAAGTATGAAGGCCGATCT 58.631 43.478 12.08 2.18 0.00 2.75
5051 7588 4.444720 CGTTAAAGTATGAAGGCCGATCTC 59.555 45.833 12.08 2.27 0.00 2.75
5052 7589 5.602628 GTTAAAGTATGAAGGCCGATCTCT 58.397 41.667 12.08 6.10 0.00 3.10
5053 7590 3.742433 AAGTATGAAGGCCGATCTCTG 57.258 47.619 12.08 0.00 0.00 3.35
5054 7591 2.672098 AGTATGAAGGCCGATCTCTGT 58.328 47.619 12.08 0.70 0.00 3.41
5055 7592 3.034635 AGTATGAAGGCCGATCTCTGTT 58.965 45.455 12.08 0.00 0.00 3.16
5056 7593 2.611225 ATGAAGGCCGATCTCTGTTC 57.389 50.000 12.08 2.12 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 7.396540 AAGCGAACAATATCTTCAGGAAATT 57.603 32.000 0.00 0.00 0.00 1.82
43 44 3.492656 CGTGTGGAGAAGAGGAAGAACAA 60.493 47.826 0.00 0.00 0.00 2.83
80 81 2.897436 TGAACATGAGCGGATCAAGAG 58.103 47.619 5.41 0.00 42.53 2.85
90 91 2.352960 GGAAGGAACGATGAACATGAGC 59.647 50.000 0.00 0.00 0.00 4.26
95 96 0.036765 CGGGGAAGGAACGATGAACA 60.037 55.000 0.00 0.00 0.00 3.18
100 101 1.298667 CCAACGGGGAAGGAACGAT 59.701 57.895 0.00 0.00 40.01 3.73
133 134 1.522668 CGCAGGATCACTTCAACCAA 58.477 50.000 0.00 0.00 0.00 3.67
151 152 2.125673 CACGGGCCAGTAAGTCCG 60.126 66.667 8.66 2.54 46.95 4.79
166 167 5.756347 TCAAATATATACCTCAACACGGCAC 59.244 40.000 0.00 0.00 0.00 5.01
167 168 5.919755 TCAAATATATACCTCAACACGGCA 58.080 37.500 0.00 0.00 0.00 5.69
168 169 6.874134 AGATCAAATATATACCTCAACACGGC 59.126 38.462 0.00 0.00 0.00 5.68
195 196 5.674525 ACAGATCAAGAAGTTCAGAACACA 58.325 37.500 15.85 0.00 0.00 3.72
198 199 7.567771 CGTGTTACAGATCAAGAAGTTCAGAAC 60.568 40.741 5.00 5.00 0.00 3.01
200 201 5.920840 CGTGTTACAGATCAAGAAGTTCAGA 59.079 40.000 5.50 3.08 0.00 3.27
203 204 4.989168 ACCGTGTTACAGATCAAGAAGTTC 59.011 41.667 0.00 0.00 0.00 3.01
220 221 1.608627 GGAGTACCTCCCACCGTGT 60.609 63.158 0.00 0.00 44.36 4.49
233 234 4.502604 GCCAACTAGTGAACACAAGGAGTA 60.503 45.833 0.00 0.00 0.00 2.59
251 253 3.626930 TGGTACAAGATTATGGGCCAAC 58.373 45.455 11.89 0.00 31.92 3.77
286 290 0.675837 CATGCTGCTGCTACACCTGT 60.676 55.000 17.00 0.00 40.48 4.00
296 300 0.963962 ACCAGAAAACCATGCTGCTG 59.036 50.000 0.00 0.00 0.00 4.41
319 446 7.340122 TCAGTCGATCTCATAGAAGTCAATT 57.660 36.000 0.00 0.00 0.00 2.32
387 1416 7.996644 TCTTTACCTTACAAACCACTCTTCAAT 59.003 33.333 0.00 0.00 0.00 2.57
422 1624 6.368791 CGATTGGAGTAATGAAAGTGAAGTCA 59.631 38.462 0.00 0.00 0.00 3.41
423 1625 6.590292 TCGATTGGAGTAATGAAAGTGAAGTC 59.410 38.462 0.00 0.00 0.00 3.01
428 1630 9.490663 GTTTATTCGATTGGAGTAATGAAAGTG 57.509 33.333 0.00 0.00 28.41 3.16
471 1845 1.047002 ATAGCTCCAGTGCTAGCCTG 58.953 55.000 20.25 20.25 46.89 4.85
544 1947 3.270877 CGGAGTAAAAAGGACAGGATGG 58.729 50.000 0.00 0.00 43.62 3.51
550 1953 6.229936 AGTATATGCGGAGTAAAAAGGACA 57.770 37.500 0.00 0.00 0.00 4.02
652 2075 2.380064 ATTGGTTTGTCTTGCCCAGA 57.620 45.000 0.00 0.00 0.00 3.86
688 2111 8.386606 TGCAAATTTACATGTGTTTCAGTTTTC 58.613 29.630 9.11 0.00 0.00 2.29
723 2146 7.435068 TGCCACTGAGTCTTTTAGTTTAATC 57.565 36.000 0.00 0.00 0.00 1.75
724 2147 6.072452 GCTGCCACTGAGTCTTTTAGTTTAAT 60.072 38.462 0.00 0.00 0.00 1.40
726 2149 4.755123 GCTGCCACTGAGTCTTTTAGTTTA 59.245 41.667 0.00 0.00 0.00 2.01
727 2150 3.565902 GCTGCCACTGAGTCTTTTAGTTT 59.434 43.478 0.00 0.00 0.00 2.66
735 2184 1.543065 CCAGAGCTGCCACTGAGTCT 61.543 60.000 20.57 3.24 36.38 3.24
739 2188 1.123861 AGTTCCAGAGCTGCCACTGA 61.124 55.000 20.57 8.44 36.38 3.41
740 2189 0.250640 AAGTTCCAGAGCTGCCACTG 60.251 55.000 14.61 14.61 0.00 3.66
745 2194 1.552792 AGGACTAAGTTCCAGAGCTGC 59.447 52.381 0.00 0.00 38.25 5.25
752 2201 4.341235 CCATGTATCGAGGACTAAGTTCCA 59.659 45.833 0.00 0.00 38.25 3.53
755 2204 3.704566 TGCCATGTATCGAGGACTAAGTT 59.295 43.478 0.00 0.00 0.00 2.66
772 2221 1.206878 TGAGTAGTGCCATCTGCCAT 58.793 50.000 0.00 0.00 40.16 4.40
773 2222 0.983467 TTGAGTAGTGCCATCTGCCA 59.017 50.000 0.00 0.00 40.16 4.92
774 2223 1.661341 CTTGAGTAGTGCCATCTGCC 58.339 55.000 0.00 0.00 40.16 4.85
775 2224 1.065854 ACCTTGAGTAGTGCCATCTGC 60.066 52.381 0.00 0.00 41.77 4.26
776 2225 2.625737 CACCTTGAGTAGTGCCATCTG 58.374 52.381 0.00 0.00 0.00 2.90
957 2442 1.886542 GAGATCCACCAAAACCACCAC 59.113 52.381 0.00 0.00 0.00 4.16
958 2443 1.203001 GGAGATCCACCAAAACCACCA 60.203 52.381 0.00 0.00 35.64 4.17
1990 3495 0.570218 AGCTCCCATCCCACCTCTAT 59.430 55.000 0.00 0.00 0.00 1.98
2160 3665 1.861982 TCCCCAAAAACCGTTTCCAA 58.138 45.000 0.00 0.00 0.00 3.53
2167 3672 3.520569 CAGCATATTTCCCCAAAAACCG 58.479 45.455 0.00 0.00 0.00 4.44
2178 3683 0.108585 TCCGGGAGCCAGCATATTTC 59.891 55.000 0.00 0.00 0.00 2.17
2195 3700 3.834489 TTTCATCAGAGAGGATGCTCC 57.166 47.619 11.06 2.65 43.44 4.70
2294 3799 4.051922 ACGCCGAATGATAGAATCTTCAC 58.948 43.478 0.00 0.00 0.00 3.18
2437 3942 3.900601 ACCTGGCCAAACAATTCATTACA 59.099 39.130 7.01 0.00 0.00 2.41
2438 3943 4.535526 ACCTGGCCAAACAATTCATTAC 57.464 40.909 7.01 0.00 0.00 1.89
2448 3953 0.392336 TGCATTCAACCTGGCCAAAC 59.608 50.000 7.01 0.00 0.00 2.93
2551 4056 3.367932 CGTCGCAGTGTCAACATATTTCT 59.632 43.478 0.00 0.00 0.00 2.52
2552 4057 3.122948 ACGTCGCAGTGTCAACATATTTC 59.877 43.478 0.00 0.00 0.00 2.17
2561 4066 2.858839 CAGTAATACGTCGCAGTGTCA 58.141 47.619 0.00 0.00 0.00 3.58
2562 4067 1.582502 GCAGTAATACGTCGCAGTGTC 59.417 52.381 0.00 0.00 0.00 3.67
2564 4069 1.583856 CAGCAGTAATACGTCGCAGTG 59.416 52.381 0.00 0.00 0.00 3.66
2608 4116 8.024145 ACTTCAAACTTATCCATCCTAGGTAG 57.976 38.462 9.08 2.33 0.00 3.18
2616 4124 6.592607 TCACCGTAACTTCAAACTTATCCATC 59.407 38.462 0.00 0.00 0.00 3.51
2626 4134 4.411256 AAGTCCTCACCGTAACTTCAAA 57.589 40.909 0.00 0.00 0.00 2.69
2628 4136 3.243975 GGAAAGTCCTCACCGTAACTTCA 60.244 47.826 0.00 0.00 32.53 3.02
2636 4144 0.317479 AGTTCGGAAAGTCCTCACCG 59.683 55.000 0.00 0.00 45.61 4.94
2651 4159 1.156736 CCGTGGACCATTCACAGTTC 58.843 55.000 0.00 0.00 35.03 3.01
2658 4166 2.985896 TCAATTCTCCGTGGACCATTC 58.014 47.619 0.00 0.00 0.00 2.67
2688 4196 5.760253 ACGAAGAAGCAGAAATCTCTTGAAA 59.240 36.000 0.00 0.00 0.00 2.69
2755 4263 9.077674 GCGTAGATGTATCAGTTTTCCTATATG 57.922 37.037 0.00 0.00 0.00 1.78
2834 4342 5.676552 TCAGTACTTGAAGGTTTTGTAGCA 58.323 37.500 0.00 0.00 31.34 3.49
2835 4343 5.334182 GCTCAGTACTTGAAGGTTTTGTAGC 60.334 44.000 0.00 0.00 34.81 3.58
2864 4372 1.162698 CTGCAGATCAACACACCCTG 58.837 55.000 8.42 0.00 0.00 4.45
2866 4374 1.271054 ACTCTGCAGATCAACACACCC 60.271 52.381 18.63 0.00 0.00 4.61
2873 4381 3.580022 TGAAGGAAGACTCTGCAGATCAA 59.420 43.478 18.63 0.00 0.00 2.57
2882 4392 3.307339 GGTCAATGCTGAAGGAAGACTCT 60.307 47.826 7.40 0.00 31.88 3.24
2883 4393 3.006247 GGTCAATGCTGAAGGAAGACTC 58.994 50.000 7.40 0.00 31.88 3.36
2899 4411 4.646945 TCTTAAATTGCACAACAGGGTCAA 59.353 37.500 0.00 0.00 0.00 3.18
2944 4456 5.307976 TCCCTCTTGGAACCTGATATATGTG 59.692 44.000 0.00 0.00 41.40 3.21
2984 4496 0.458669 TCCTCGTAATTCGGTGAGGC 59.541 55.000 2.26 0.00 46.10 4.70
2991 4503 4.553429 GCAACACAAAATCCTCGTAATTCG 59.447 41.667 0.00 0.00 41.41 3.34
3007 4519 4.979943 TTTCACTTTCATCAGCAACACA 57.020 36.364 0.00 0.00 0.00 3.72
3008 4520 5.332808 GCATTTTCACTTTCATCAGCAACAC 60.333 40.000 0.00 0.00 0.00 3.32
3014 4526 9.282247 GTACATTAGCATTTTCACTTTCATCAG 57.718 33.333 0.00 0.00 0.00 2.90
3020 4532 7.759489 TCCTGTACATTAGCATTTTCACTTT 57.241 32.000 0.00 0.00 0.00 2.66
3034 4546 5.195940 CAACTTCCATCCATCCTGTACATT 58.804 41.667 0.00 0.00 0.00 2.71
3042 4554 3.054065 ACTCTTCCAACTTCCATCCATCC 60.054 47.826 0.00 0.00 0.00 3.51
3073 4585 2.698855 AGACGCCTTATCTGCAACAT 57.301 45.000 0.00 0.00 0.00 2.71
3077 4589 4.371786 CAGAATAAGACGCCTTATCTGCA 58.628 43.478 4.35 0.00 42.97 4.41
3084 4596 6.127730 CCAATTTAACCAGAATAAGACGCCTT 60.128 38.462 0.00 0.00 36.43 4.35
3088 4600 8.726988 TCTTTCCAATTTAACCAGAATAAGACG 58.273 33.333 0.00 0.00 0.00 4.18
3154 4666 9.171701 CGATAGTACTAGTTCTTTTAGATGTGC 57.828 37.037 7.37 0.00 0.00 4.57
3187 4699 5.326900 TGAATATGATCCCAATCCACATGG 58.673 41.667 0.00 0.00 37.71 3.66
3190 4702 5.910355 TCTGAATATGATCCCAATCCACA 57.090 39.130 0.00 0.00 0.00 4.17
3196 4708 7.405292 ACAACTTCTTCTGAATATGATCCCAA 58.595 34.615 0.00 0.00 0.00 4.12
3197 4709 6.962182 ACAACTTCTTCTGAATATGATCCCA 58.038 36.000 0.00 0.00 0.00 4.37
3229 4741 2.289320 GCAGCTCAAAGACCTTCTCAGA 60.289 50.000 0.00 0.00 0.00 3.27
3338 4850 6.652481 CACTAAGGACAAGTGAATCACTGAAT 59.348 38.462 17.46 5.35 44.62 2.57
3348 4860 5.468746 GTGTAAATGCACTAAGGACAAGTGA 59.531 40.000 7.39 0.00 45.89 3.41
3421 4933 3.264947 CATCTGCTCCGTCAATTCTCAA 58.735 45.455 0.00 0.00 0.00 3.02
3432 4944 0.108186 TGGTAACTGCATCTGCTCCG 60.108 55.000 3.53 0.00 42.66 4.63
3439 4951 1.066430 TCCGACCTTGGTAACTGCATC 60.066 52.381 0.00 0.00 37.61 3.91
3488 5000 5.345702 CAACAAACTCATTGCATATGGGAG 58.654 41.667 13.51 7.21 43.13 4.30
3532 5044 9.941664 CCAGTTGCACATATTTAAGAGAAATAG 57.058 33.333 0.00 0.00 0.00 1.73
3537 5049 6.061022 TCCCAGTTGCACATATTTAAGAGA 57.939 37.500 0.00 0.00 0.00 3.10
3541 5053 5.186256 TCCTCCCAGTTGCACATATTTAA 57.814 39.130 0.00 0.00 0.00 1.52
3544 5056 2.578021 ACTCCTCCCAGTTGCACATATT 59.422 45.455 0.00 0.00 0.00 1.28
3550 5062 1.768684 GACCACTCCTCCCAGTTGCA 61.769 60.000 0.00 0.00 0.00 4.08
3574 5086 3.567164 ACACCAGAAACATCTTGCTCAAG 59.433 43.478 3.32 3.32 39.71 3.02
3580 5092 4.282068 CGTTCAACACCAGAAACATCTTG 58.718 43.478 0.00 0.00 0.00 3.02
3589 5113 2.833227 CCCCCGTTCAACACCAGA 59.167 61.111 0.00 0.00 0.00 3.86
3624 5148 6.974622 GTGTAGATTGGGATGCTTTACAAATG 59.025 38.462 0.00 0.00 0.00 2.32
3635 5159 1.670811 GCAACCGTGTAGATTGGGATG 59.329 52.381 0.00 0.00 0.00 3.51
3636 5160 1.280710 TGCAACCGTGTAGATTGGGAT 59.719 47.619 0.00 0.00 0.00 3.85
3637 5161 0.687920 TGCAACCGTGTAGATTGGGA 59.312 50.000 0.00 0.00 0.00 4.37
3664 5191 1.302511 GCAAGCTCTCCAAACGGGA 60.303 57.895 0.00 0.00 45.89 5.14
3674 5201 1.546961 ACCTACTACGTGCAAGCTCT 58.453 50.000 0.00 0.00 0.00 4.09
3678 5205 1.076332 GGCAACCTACTACGTGCAAG 58.924 55.000 0.00 0.00 38.78 4.01
3712 5239 1.301401 CTCCAAGTTGTCGCGGGAA 60.301 57.895 6.13 0.00 0.00 3.97
3763 5290 4.707448 TGCCTTCAAGTTGTTTAGTCCAAA 59.293 37.500 2.11 0.00 0.00 3.28
3820 5350 2.349817 GGCCATCGCATTTCTCAATACG 60.350 50.000 0.00 0.00 36.38 3.06
3821 5351 2.880890 AGGCCATCGCATTTCTCAATAC 59.119 45.455 5.01 0.00 36.38 1.89
3822 5352 2.880268 CAGGCCATCGCATTTCTCAATA 59.120 45.455 5.01 0.00 36.38 1.90
3834 5364 0.831288 AGATCCTCTCCAGGCCATCG 60.831 60.000 5.01 0.00 40.12 3.84
3837 5367 4.716025 GAGATCCTCTCCAGGCCA 57.284 61.111 5.01 0.00 40.12 5.36
3875 5405 0.819582 ACAGCCATGTAATTGCAGGC 59.180 50.000 21.02 21.02 45.54 4.85
3883 5413 4.695455 GCTTAAGTTCAGACAGCCATGTAA 59.305 41.667 4.02 0.00 40.68 2.41
3913 5443 0.032615 TGCAAACTGTCCAACCCCTT 60.033 50.000 0.00 0.00 0.00 3.95
3963 5493 3.307339 GCACCCAGTTTGAAGAGATCTCT 60.307 47.826 19.92 19.92 42.75 3.10
3976 5506 3.511610 AAGCCCAGGCACCCAGTT 61.512 61.111 12.03 0.00 44.88 3.16
4034 5564 4.954202 TCTAACTGGTAGACCATGTGTAGG 59.046 45.833 0.89 0.00 46.46 3.18
4064 5594 1.812571 GTTCATACCTTGTGCCAGTGG 59.187 52.381 4.20 4.20 0.00 4.00
4087 5617 8.826710 TCCAACTCAAAAAGAAGTATATATGCG 58.173 33.333 0.00 0.00 0.00 4.73
4099 5629 5.478679 TGTTCCAACTTCCAACTCAAAAAGA 59.521 36.000 0.00 0.00 0.00 2.52
4100 5630 5.576774 GTGTTCCAACTTCCAACTCAAAAAG 59.423 40.000 0.00 0.00 0.00 2.27
4103 5633 4.157656 CAGTGTTCCAACTTCCAACTCAAA 59.842 41.667 0.00 0.00 0.00 2.69
4104 5634 3.694072 CAGTGTTCCAACTTCCAACTCAA 59.306 43.478 0.00 0.00 0.00 3.02
4105 5635 3.278574 CAGTGTTCCAACTTCCAACTCA 58.721 45.455 0.00 0.00 0.00 3.41
4106 5636 2.033424 GCAGTGTTCCAACTTCCAACTC 59.967 50.000 0.00 0.00 0.00 3.01
4108 5638 1.748493 TGCAGTGTTCCAACTTCCAAC 59.252 47.619 0.00 0.00 0.00 3.77
4109 5639 2.136298 TGCAGTGTTCCAACTTCCAA 57.864 45.000 0.00 0.00 0.00 3.53
4110 5640 2.363306 ATGCAGTGTTCCAACTTCCA 57.637 45.000 0.00 0.00 0.00 3.53
4111 5641 6.992715 AGTATATATGCAGTGTTCCAACTTCC 59.007 38.462 3.52 0.00 0.00 3.46
4112 5642 7.041780 CCAGTATATATGCAGTGTTCCAACTTC 60.042 40.741 3.52 0.00 0.00 3.01
4113 5643 6.767902 CCAGTATATATGCAGTGTTCCAACTT 59.232 38.462 3.52 0.00 0.00 2.66
4114 5644 6.126768 ACCAGTATATATGCAGTGTTCCAACT 60.127 38.462 3.52 0.00 0.00 3.16
4115 5645 6.055588 ACCAGTATATATGCAGTGTTCCAAC 58.944 40.000 3.52 0.00 0.00 3.77
4116 5646 6.247229 ACCAGTATATATGCAGTGTTCCAA 57.753 37.500 3.52 0.00 0.00 3.53
4117 5647 5.887214 ACCAGTATATATGCAGTGTTCCA 57.113 39.130 3.52 0.00 0.00 3.53
4118 5648 7.599245 GTCTAACCAGTATATATGCAGTGTTCC 59.401 40.741 3.52 0.00 0.00 3.62
4119 5649 8.141909 TGTCTAACCAGTATATATGCAGTGTTC 58.858 37.037 3.52 0.00 0.00 3.18
4120 5650 8.018537 TGTCTAACCAGTATATATGCAGTGTT 57.981 34.615 3.52 5.90 0.00 3.32
4121 5651 7.597288 TGTCTAACCAGTATATATGCAGTGT 57.403 36.000 3.52 0.00 0.00 3.55
4146 5676 8.303156 TCAGAGAATCAAAGACACAAAACAAAA 58.697 29.630 0.00 0.00 37.82 2.44
4150 5680 6.693113 GGTTCAGAGAATCAAAGACACAAAAC 59.307 38.462 0.00 0.00 37.82 2.43
4155 5687 7.672983 TTATGGTTCAGAGAATCAAAGACAC 57.327 36.000 0.00 0.00 37.82 3.67
4293 6558 4.113354 GGCTTCCTCAACTTAGTACATCG 58.887 47.826 0.00 0.00 0.00 3.84
4324 6589 0.684535 TGACACTTGCCCATCTTCGA 59.315 50.000 0.00 0.00 0.00 3.71
4325 6590 1.399440 CATGACACTTGCCCATCTTCG 59.601 52.381 0.00 0.00 0.00 3.79
4333 6598 2.646930 TCCATCATCATGACACTTGCC 58.353 47.619 0.00 0.00 30.57 4.52
4340 6605 5.049828 TCGTTACACATCCATCATCATGAC 58.950 41.667 0.00 0.00 30.57 3.06
4400 6665 3.968265 ACAGTATTCCCAGGGAACATTG 58.032 45.455 24.40 21.03 45.07 2.82
4401 6666 5.454755 CGATACAGTATTCCCAGGGAACATT 60.455 44.000 24.40 5.76 45.07 2.71
4403 6668 3.386726 CGATACAGTATTCCCAGGGAACA 59.613 47.826 24.40 9.65 45.07 3.18
4412 6677 5.751990 ACAACGGAATTCGATACAGTATTCC 59.248 40.000 12.40 12.40 41.64 3.01
4430 6704 7.307101 CCCAAATTCAGAAAATAAACACAACGG 60.307 37.037 0.00 0.00 0.00 4.44
4435 6709 5.994668 TGGCCCAAATTCAGAAAATAAACAC 59.005 36.000 0.00 0.00 0.00 3.32
4445 6726 0.332632 CCCTCTGGCCCAAATTCAGA 59.667 55.000 0.00 0.00 36.30 3.27
4578 6867 9.739276 ACTGAAAGAATGAAACCATCAGTTATA 57.261 29.630 0.00 0.00 38.53 0.98
4579 6868 8.517878 CACTGAAAGAATGAAACCATCAGTTAT 58.482 33.333 2.99 0.00 38.53 1.89
4601 6901 6.824305 AATAAAACTCCATCACTTCCACTG 57.176 37.500 0.00 0.00 0.00 3.66
4667 6971 1.272212 CAACACAGGGTTTGGCCATAC 59.728 52.381 17.21 17.21 37.72 2.39
4689 6993 5.943416 TGACAATGTAGTTTGGGGATACAAG 59.057 40.000 0.00 0.00 33.44 3.16
4758 7263 9.214957 CCCATAATATAAGAGCGTAATGTCAAA 57.785 33.333 0.00 0.00 0.00 2.69
4759 7264 8.590204 TCCCATAATATAAGAGCGTAATGTCAA 58.410 33.333 0.00 0.00 0.00 3.18
4760 7265 8.033038 GTCCCATAATATAAGAGCGTAATGTCA 58.967 37.037 0.00 0.00 0.00 3.58
4761 7266 7.220300 CGTCCCATAATATAAGAGCGTAATGTC 59.780 40.741 0.00 0.00 0.00 3.06
4762 7267 7.033791 CGTCCCATAATATAAGAGCGTAATGT 58.966 38.462 0.00 0.00 0.00 2.71
4763 7268 6.475727 CCGTCCCATAATATAAGAGCGTAATG 59.524 42.308 0.00 0.00 0.00 1.90
4764 7269 6.379133 TCCGTCCCATAATATAAGAGCGTAAT 59.621 38.462 0.00 0.00 0.00 1.89
4765 7270 5.711506 TCCGTCCCATAATATAAGAGCGTAA 59.288 40.000 0.00 0.00 0.00 3.18
4766 7271 5.255687 TCCGTCCCATAATATAAGAGCGTA 58.744 41.667 0.00 0.00 0.00 4.42
4767 7272 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4768 7273 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4769 7274 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4770 7275 4.406003 CCCCTCCGTCCCATAATATAAGAG 59.594 50.000 0.00 0.00 0.00 2.85
4771 7276 4.359105 CCCCTCCGTCCCATAATATAAGA 58.641 47.826 0.00 0.00 0.00 2.10
4772 7277 3.454812 CCCCCTCCGTCCCATAATATAAG 59.545 52.174 0.00 0.00 0.00 1.73
4773 7278 3.181392 ACCCCCTCCGTCCCATAATATAA 60.181 47.826 0.00 0.00 0.00 0.98
4774 7279 2.387861 ACCCCCTCCGTCCCATAATATA 59.612 50.000 0.00 0.00 0.00 0.86
4775 7280 1.153565 ACCCCCTCCGTCCCATAATAT 59.846 52.381 0.00 0.00 0.00 1.28
4776 7281 0.569204 ACCCCCTCCGTCCCATAATA 59.431 55.000 0.00 0.00 0.00 0.98
4777 7282 0.569204 TACCCCCTCCGTCCCATAAT 59.431 55.000 0.00 0.00 0.00 1.28
4778 7283 0.398948 GTACCCCCTCCGTCCCATAA 60.399 60.000 0.00 0.00 0.00 1.90
4779 7284 1.233949 GTACCCCCTCCGTCCCATA 59.766 63.158 0.00 0.00 0.00 2.74
4780 7285 2.041197 GTACCCCCTCCGTCCCAT 60.041 66.667 0.00 0.00 0.00 4.00
4781 7286 4.764771 CGTACCCCCTCCGTCCCA 62.765 72.222 0.00 0.00 0.00 4.37
4782 7287 3.358932 TACGTACCCCCTCCGTCCC 62.359 68.421 0.00 0.00 36.12 4.46
4783 7288 1.825622 CTACGTACCCCCTCCGTCC 60.826 68.421 0.00 0.00 36.12 4.79
4784 7289 1.825622 CCTACGTACCCCCTCCGTC 60.826 68.421 0.00 0.00 36.12 4.79
4785 7290 1.279025 TACCTACGTACCCCCTCCGT 61.279 60.000 0.00 0.00 38.53 4.69
4786 7291 0.111253 ATACCTACGTACCCCCTCCG 59.889 60.000 0.00 0.00 0.00 4.63
4787 7292 2.388526 AATACCTACGTACCCCCTCC 57.611 55.000 0.00 0.00 0.00 4.30
4788 7293 7.539034 TTTATAAATACCTACGTACCCCCTC 57.461 40.000 0.00 0.00 0.00 4.30
4789 7294 9.788815 ATATTTATAAATACCTACGTACCCCCT 57.211 33.333 18.02 0.00 34.01 4.79
4817 7322 1.133513 ACCACTTCCTGCAATCACCAA 60.134 47.619 0.00 0.00 0.00 3.67
4863 7368 1.073964 CCGTGTTCAGTCTGCATCTG 58.926 55.000 11.34 11.34 0.00 2.90
4866 7371 2.029288 CGCCGTGTTCAGTCTGCAT 61.029 57.895 0.00 0.00 0.00 3.96
4884 7389 0.452987 ACCGCATTGTGCACATCATC 59.547 50.000 22.39 9.38 45.36 2.92
4885 7390 0.171679 CACCGCATTGTGCACATCAT 59.828 50.000 22.39 9.52 45.36 2.45
4886 7391 0.888285 TCACCGCATTGTGCACATCA 60.888 50.000 22.39 7.09 45.36 3.07
4888 7393 0.241749 CTTCACCGCATTGTGCACAT 59.758 50.000 22.39 8.18 45.36 3.21
4889 7394 1.653667 CTTCACCGCATTGTGCACA 59.346 52.632 17.42 17.42 45.36 4.57
4890 7395 1.081242 CCTTCACCGCATTGTGCAC 60.081 57.895 10.75 10.75 45.36 4.57
4891 7396 1.514678 GACCTTCACCGCATTGTGCA 61.515 55.000 2.63 0.00 45.36 4.57
4892 7397 1.210155 GACCTTCACCGCATTGTGC 59.790 57.895 0.00 0.00 40.69 4.57
4893 7398 1.227999 ACGACCTTCACCGCATTGTG 61.228 55.000 0.00 0.00 37.59 3.33
4894 7399 0.534203 AACGACCTTCACCGCATTGT 60.534 50.000 0.00 0.00 0.00 2.71
4895 7400 0.110238 CAACGACCTTCACCGCATTG 60.110 55.000 0.00 0.00 0.00 2.82
4896 7401 0.534203 ACAACGACCTTCACCGCATT 60.534 50.000 0.00 0.00 0.00 3.56
4897 7402 0.534203 AACAACGACCTTCACCGCAT 60.534 50.000 0.00 0.00 0.00 4.73
4898 7403 1.153329 AACAACGACCTTCACCGCA 60.153 52.632 0.00 0.00 0.00 5.69
4901 7406 0.307760 CAGCAACAACGACCTTCACC 59.692 55.000 0.00 0.00 0.00 4.02
4904 7409 0.235926 GCTCAGCAACAACGACCTTC 59.764 55.000 0.00 0.00 0.00 3.46
4905 7410 0.179045 AGCTCAGCAACAACGACCTT 60.179 50.000 0.00 0.00 0.00 3.50
4906 7411 0.601311 GAGCTCAGCAACAACGACCT 60.601 55.000 9.40 0.00 0.00 3.85
4907 7412 0.601311 AGAGCTCAGCAACAACGACC 60.601 55.000 17.77 0.00 0.00 4.79
4908 7413 0.510359 CAGAGCTCAGCAACAACGAC 59.490 55.000 17.77 0.00 0.00 4.34
4909 7414 0.601046 CCAGAGCTCAGCAACAACGA 60.601 55.000 17.77 0.00 0.00 3.85
4910 7415 1.572085 CCCAGAGCTCAGCAACAACG 61.572 60.000 17.77 0.00 0.00 4.10
4911 7416 0.250467 TCCCAGAGCTCAGCAACAAC 60.250 55.000 17.77 0.00 0.00 3.32
4912 7417 0.035881 CTCCCAGAGCTCAGCAACAA 59.964 55.000 17.77 0.00 0.00 2.83
4913 7418 1.675801 CTCCCAGAGCTCAGCAACA 59.324 57.895 17.77 0.00 0.00 3.33
4914 7419 1.078567 CCTCCCAGAGCTCAGCAAC 60.079 63.158 17.77 0.00 0.00 4.17
4932 7437 3.759766 GAGCTCCGACGCAGGCTAC 62.760 68.421 0.87 0.00 35.01 3.58
4933 7438 3.518998 GAGCTCCGACGCAGGCTA 61.519 66.667 0.87 0.00 35.01 3.93
4936 7441 4.504916 CCAGAGCTCCGACGCAGG 62.505 72.222 10.93 0.00 0.00 4.85
4938 7443 2.989253 TTCCAGAGCTCCGACGCA 60.989 61.111 10.93 0.00 0.00 5.24
4939 7444 2.493907 AAGTTCCAGAGCTCCGACGC 62.494 60.000 10.93 2.48 0.00 5.19
4940 7445 0.734253 CAAGTTCCAGAGCTCCGACG 60.734 60.000 10.93 0.00 0.00 5.12
4942 7447 1.975327 CCAAGTTCCAGAGCTCCGA 59.025 57.895 10.93 3.22 0.00 4.55
4944 7449 1.743252 CGCCAAGTTCCAGAGCTCC 60.743 63.158 10.93 0.00 0.00 4.70
4956 7483 2.764314 CCCTTCGCCAATCGCCAAG 61.764 63.158 0.00 0.00 38.27 3.61
4959 7486 4.483243 TCCCCTTCGCCAATCGCC 62.483 66.667 0.00 0.00 38.27 5.54
4961 7488 0.529992 GTAGTCCCCTTCGCCAATCG 60.530 60.000 0.00 0.00 40.15 3.34
4962 7489 0.529992 CGTAGTCCCCTTCGCCAATC 60.530 60.000 0.00 0.00 0.00 2.67
4963 7490 1.520666 CGTAGTCCCCTTCGCCAAT 59.479 57.895 0.00 0.00 0.00 3.16
4965 7492 3.072468 CCGTAGTCCCCTTCGCCA 61.072 66.667 0.00 0.00 30.94 5.69
4968 7495 0.739561 CTCTTCCGTAGTCCCCTTCG 59.260 60.000 0.00 0.00 0.00 3.79
4974 7511 0.456628 GAGCACCTCTTCCGTAGTCC 59.543 60.000 0.00 0.00 0.00 3.85
4980 7517 1.294659 GCAGTTGAGCACCTCTTCCG 61.295 60.000 0.00 0.00 0.00 4.30
4982 7519 3.312404 TGCAGTTGAGCACCTCTTC 57.688 52.632 0.00 0.00 40.11 2.87
4995 7532 6.037940 CACAGATAGTTGCTTGAATATGCAGT 59.962 38.462 0.00 0.00 38.10 4.40
5002 7539 4.012374 CACCCACAGATAGTTGCTTGAAT 58.988 43.478 0.00 0.00 0.00 2.57
5005 7542 3.057969 TCACCCACAGATAGTTGCTTG 57.942 47.619 0.00 0.00 0.00 4.01
5008 7545 1.740025 GCTTCACCCACAGATAGTTGC 59.260 52.381 0.00 0.00 0.00 4.17
5009 7546 2.002586 CGCTTCACCCACAGATAGTTG 58.997 52.381 0.00 0.00 0.00 3.16
5010 7547 1.623811 ACGCTTCACCCACAGATAGTT 59.376 47.619 0.00 0.00 0.00 2.24
5011 7548 1.267121 ACGCTTCACCCACAGATAGT 58.733 50.000 0.00 0.00 0.00 2.12
5012 7549 2.386661 AACGCTTCACCCACAGATAG 57.613 50.000 0.00 0.00 0.00 2.08
5013 7550 3.965379 TTAACGCTTCACCCACAGATA 57.035 42.857 0.00 0.00 0.00 1.98
5015 7552 2.158871 ACTTTAACGCTTCACCCACAGA 60.159 45.455 0.00 0.00 0.00 3.41
5016 7553 2.218603 ACTTTAACGCTTCACCCACAG 58.781 47.619 0.00 0.00 0.00 3.66
5018 7555 3.998341 TCATACTTTAACGCTTCACCCAC 59.002 43.478 0.00 0.00 0.00 4.61
5021 7558 4.436986 GCCTTCATACTTTAACGCTTCACC 60.437 45.833 0.00 0.00 0.00 4.02
5022 7559 4.436986 GGCCTTCATACTTTAACGCTTCAC 60.437 45.833 0.00 0.00 0.00 3.18
5023 7560 3.687698 GGCCTTCATACTTTAACGCTTCA 59.312 43.478 0.00 0.00 0.00 3.02
5024 7561 3.242316 CGGCCTTCATACTTTAACGCTTC 60.242 47.826 0.00 0.00 0.00 3.86
5025 7562 2.676342 CGGCCTTCATACTTTAACGCTT 59.324 45.455 0.00 0.00 0.00 4.68
5026 7563 2.093869 TCGGCCTTCATACTTTAACGCT 60.094 45.455 0.00 0.00 0.00 5.07
5028 7565 4.369182 AGATCGGCCTTCATACTTTAACG 58.631 43.478 0.00 0.00 0.00 3.18
5029 7566 5.463724 CAGAGATCGGCCTTCATACTTTAAC 59.536 44.000 0.00 0.00 0.00 2.01
5030 7567 5.128827 ACAGAGATCGGCCTTCATACTTTAA 59.871 40.000 0.00 0.00 0.00 1.52
5031 7568 4.649674 ACAGAGATCGGCCTTCATACTTTA 59.350 41.667 0.00 0.00 0.00 1.85
5032 7569 3.452627 ACAGAGATCGGCCTTCATACTTT 59.547 43.478 0.00 0.00 0.00 2.66
5033 7570 3.034635 ACAGAGATCGGCCTTCATACTT 58.965 45.455 0.00 0.00 0.00 2.24
5035 7572 3.385577 GAACAGAGATCGGCCTTCATAC 58.614 50.000 0.00 0.00 0.00 2.39
5036 7573 3.735237 GAACAGAGATCGGCCTTCATA 57.265 47.619 0.00 0.00 0.00 2.15
5037 7574 2.611225 GAACAGAGATCGGCCTTCAT 57.389 50.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.